RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15361
(178 letters)
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 78.6 bits (193), Expect = 2e-20
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEK---------FKQISMAYEVLSN 98
+Y ILG P+ +LK+ Y+KL L YHPDK + F +I A+++L N
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 99 PEKRELYDQ 107
E ++ YD
Sbjct: 78 EETKKKYDL 86
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 77.7 bits (191), Expect = 6e-20
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 47 TFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEK------FKQISMAYEVLSNPE 100
T + +G+ T +++KK YRK L HPDK + + F +++ A+ N
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93
Query: 101 KRELY 105
++ LY
Sbjct: 94 QKPLY 98
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 74.3 bits (182), Expect = 7e-19
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 104
+Y+ILGV + E++KAY++LA+KYHPD+N + KFK+I AYEVL++ +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 105 YDQ 107
YDQ
Sbjct: 65 YDQ 67
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 74.3 bits (182), Expect = 8e-19
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 48 FYDILGVKPNC--TQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELY 105
++L + +++AY++ +L HPDK + ++++ +
Sbjct: 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH-ALMQELNSLWGTFKTEVYNLRM 71
Query: 106 DQGAS 110
+ G +
Sbjct: 72 NLGGT 76
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 72.8 bits (178), Expect = 3e-18
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 48 FYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEG--------EKFKQISMAYEVLS 97
++ + G+ D L ++ L +YHPDK + ++ I+ A++ L
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62
Query: 98 NPEKRELYD 106
+P R Y
Sbjct: 63 HPLMRAEYL 71
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 72.0 bits (176), Expect = 8e-18
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 36 LPPRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----EKFKQISM 91
L PR +++KE ++ + E KK R+L LK+HPDKNP E FK +
Sbjct: 8 LVPRGSILKE--VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQN 65
Query: 92 AYEVLSNPEKRELYDQG 108
L EK+ DQ
Sbjct: 66 EINRL---EKQAFLDQN 79
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 67.8 bits (165), Expect = 3e-16
Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE--GEKFKQISMAYEVLSNPEKRELY 105
+Y LG+ + +E+K+AYR+ AL+YHPDKN EKFK+I+ AY+VLS+P KRE++
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 106 DQ 107
D+
Sbjct: 65 DR 66
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 61.7 bits (149), Expect = 2e-13
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 44 KETTFYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEK 101
+ D+LG++ + + ++KAY K ++HPDK +E EK K+++ Y+ + + K
Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKMEDGVK 64
Query: 102 RELYDQ 107
Sbjct: 65 YAHQPD 70
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 28.1 bits (62), Expect = 0.53
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 62 ELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKREL 104
LKK+YR Y P +P +F +S + +PE +
Sbjct: 21 LLKKSYRW----YSPVFSPRNVPRFADVS---SITESPETLKA 56
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer
protein {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 128
Score = 26.1 bits (57), Expect = 1.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 84 EKFKQISMAYEVLSNPEKRELYDQ 107
E+FKQ+ YE+ +P+++E D
Sbjct: 6 EQFKQVRQLYEINDDPKRKEFLDD 29
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Plasmodium knowlesi
[TaxId: 5850]}
Length = 171
Score = 25.5 bits (56), Expect = 2.9
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 54 VKPNCTQDELK---KAYRKLALKYHPDKNPNEGEKFKQISMAY--EVLSNPEKRELYDQG 108
+ ++ E K Y + LKY +K P+ + FK + +L+N + E Y G
Sbjct: 78 TSTSLSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDDFEFY-MG 136
Query: 109 ASCLMAPLGLVSF 121
S + +++
Sbjct: 137 ES--LDMDAGLTY 147
>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal
domains {Human (Homo sapiens), blood isozyme [TaxId:
9606]}
Length = 100
Score = 24.3 bits (53), Expect = 4.6
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 2 DCVTRILQYGTTGIFSVKFPDVIPVDKVPAIEACLPPRP 40
+ + G T F ++ P V E C P
Sbjct: 35 NVWVHLDGPGVTRPMKKMFREIRPNSTVQWEEVCRPWVS 73
>d2j85a1 d.321.1.1 (A:2-116) Hypothetical protein B116 {Sulfolobus
turreted icosahedral virus, STIV [TaxId: 269145]}
Length = 115
Score = 24.4 bits (53), Expect = 5.6
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 19 KFPDVIPVDKVPAIEACLPPRPNMVKETTFY-------------DILGVKPNCTQDELKK 65
+FP I +DK+ + CL +++ T + G + + E+K
Sbjct: 16 EFPTTITIDKLDEEDFCLKLE-LRLEDGTLINAIGHDSTINLVNTLCGTQLQKNRVEVKM 74
Query: 66 AYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQG 108
AL + EG +VLS+ E +++Y QG
Sbjct: 75 NEGDEALIIMISQRLEEG----------KVLSDKEIKDMYRQG 107
>d2nrac1 a.4.5.10 (C:9-151) Replication initiation protein PI
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 24.5 bits (53), Expect = 6.0
Identities = 7/88 (7%), Positives = 21/88 (23%), Gaps = 14/88 (15%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQ 107
+ + P+ +LK+ + L + + K
Sbjct: 54 LAALAKITPSLAYRQLKEGGKLLGASKISLRGDDIIALAK----------ELNLLSTAKN 103
Query: 108 GASCLMAPLGLVSFTEAGYVSRKPKVTI 135
+ L + Y + +++
Sbjct: 104 SSEELDLNI----IEWIAYSPDEGYLSL 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.391
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 681,859
Number of extensions: 31637
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 22
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)