BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15362
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 327 bits (838), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 149/198 (75%), Positives = 171/198 (86%)
Query: 1 MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFN 60
MI GQ+Q ++NG + NGLAT Q N K ATGEEVP++I++T+R QYGLPEDAIVYCNFN
Sbjct: 471 MINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFN 530
Query: 61 QLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK 120
QLYKIDPSTLQMW N+LK VPNS+LWLL+FPAVGE NIQ AQ +GL Q+RI+FS VA K
Sbjct: 531 QLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPK 590
Query: 121 EEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPEL 180
EEHVRRGQLADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL LGC EL
Sbjct: 591 EEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLEL 650
Query: 181 IARTHKEYQDIAIRLGTD 198
IA+ +EY+DIA++LGTD
Sbjct: 651 IAKNRQEYEDIAVKLGTD 668
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%)
Query: 43 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATA 102
SR Q GLPE +V C FN YK++P ++ + VL+ VP+S+LWLL P +A ++A A
Sbjct: 367 SRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFA 426
Query: 103 QALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 162
A G+D R++F +++ R + AD+ LDT N HTT+ D LWTG PV+T PGET
Sbjct: 427 HAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGET 486
Query: 163 LASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 198
A+RVA S LG E+ + A+ L +D
Sbjct: 487 FAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASD 522
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%)
Query: 43 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATA 102
SR Q GLPE +V C FN YK++P ++ + VL+ VP+S+LWLL P +A ++A A
Sbjct: 367 SRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFA 426
Query: 103 QALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 162
A G+D R++F +++ R + AD+ LDT N HTT+ D LWTG PV+T PGET
Sbjct: 427 HAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGET 486
Query: 163 LASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 198
A+RVA S LG E+ + A+ L +D
Sbjct: 487 FAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASD 522
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 138 LCNGHTTSMDVL-WTGTPVVTLP--GETLASRVAASQLA--TLGCPELIARTHKEYQDIA 192
+ N T +L W TP T T A VA QL+ + G P+LI RTH +Y D +
Sbjct: 161 MLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDY-DYS 219
Query: 193 IR 194
+R
Sbjct: 220 VR 221
>pdb|1K25|A Chain A, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|C Chain C, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|D Chain D, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
Length = 685
Score = 29.3 bits (64), Expect = 1.6, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 7/139 (5%)
Query: 35 VPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVG 94
VP +T LP D IV + + T + A+ N + L P
Sbjct: 358 VPTRFGLTDEYAGQLPADNIVSIAQSSFGQGISVTQTQMLRAFTAIANDGVMLE--PKFI 415
Query: 95 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTP 154
A Q++ Q I+ + V+ + R + V D PL +M +TG P
Sbjct: 416 SAIYDTNNQSVRKSQKEIVGNPVSKEAASTTRNHMILVGTD-PLYG----TMYNHYTGKP 470
Query: 155 VVTLPGETLASRVAASQLA 173
++T+PG+ +A + +Q+A
Sbjct: 471 IITVPGQNVAVKSGTAQIA 489
>pdb|3UMG|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|C Chain C, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|D Chain D, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|E Chain E, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|F Chain F, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|G Chain G, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|H Chain H, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
Length = 254
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 38 SIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEAN 97
S+++ + G+P D I+ + N+ YK DP VL P ++ A +
Sbjct: 143 SLLLDMAKNAGIPWDVIIGSDINRKYKPDPQAYLRTAQVLGLHPGEVM----LAAAHNGD 198
Query: 98 IQATAQALGLDQHRIL 113
++A A A GL IL
Sbjct: 199 LEA-AHATGLATAFIL 213
>pdb|1SFS|A Chain A, 1.07 A Crystal Structure Of An Uncharacterized B.
Stearothermophilus Protein
Length = 240
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 30 ATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVL 77
A G+ ++ V +R+ G+P++ +++ N + +D + + WV L
Sbjct: 99 ANGQVAARNAVFHARR-LGIPKNKLLFANIEDFFAVDAAWIAAWVETL 145
>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
Length = 261
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 15 VLQNGLATNQTNTKTATGEEVPQSIVITSR----QQYGLPEDAIVYCNFNQLYKIDPSTL 70
V+ NG A A +PQ + + R QQ+GLPE A + F + ++ L
Sbjct: 183 VVPNGQARQAAEELAAQLAALPQQCLRSDRLSALQQWGLPESAALDLEFASISRVAAEAL 242
Query: 71 Q 71
+
Sbjct: 243 E 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,523,494
Number of Sequences: 62578
Number of extensions: 207555
Number of successful extensions: 459
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 16
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)