Query psy15362
Match_columns 200
No_of_seqs 214 out of 1163
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 18:57:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13844 Glyco_transf_41: Glyc 100.0 4.9E-44 1.1E-48 313.9 12.5 200 1-200 233-432 (468)
2 COG3914 Spy Predicted O-linked 100.0 2.4E-31 5.2E-36 234.1 14.5 158 41-199 418-578 (620)
3 KOG4626|consensus 99.9 1.2E-27 2.5E-32 211.9 12.2 190 11-200 694-906 (966)
4 cd03818 GT1_ExpC_like This fam 99.9 3.2E-22 7E-27 174.0 16.0 172 14-199 180-367 (396)
5 TIGR03449 mycothiol_MshA UDP-N 99.9 3.9E-22 8.4E-27 173.4 16.2 169 14-199 190-369 (405)
6 PRK15427 colanic acid biosynth 99.9 3.6E-22 7.8E-27 175.2 15.9 161 15-200 201-373 (406)
7 cd03792 GT1_Trehalose_phosphor 99.9 8.9E-22 1.9E-26 169.7 16.7 173 15-199 157-338 (372)
8 PRK15484 lipopolysaccharide 1, 99.9 8.3E-22 1.8E-26 171.3 16.4 168 14-200 164-346 (380)
9 cd03812 GT1_CapH_like This fam 99.9 6.2E-22 1.3E-26 167.9 15.1 168 14-200 162-333 (358)
10 PRK15490 Vi polysaccharide bio 99.9 2.6E-22 5.7E-27 179.7 11.4 135 14-160 365-504 (578)
11 cd03796 GT1_PIG-A_like This fa 99.9 1.5E-21 3.2E-26 170.1 15.8 160 14-198 171-333 (398)
12 TIGR03088 stp2 sugar transfera 99.9 2.4E-21 5.1E-26 166.7 15.3 168 14-199 163-339 (374)
13 cd03805 GT1_ALG2_like This fam 99.9 4.7E-21 1E-25 165.3 16.1 169 15-200 183-366 (392)
14 PRK10307 putative glycosyl tra 99.9 4.8E-21 1E-25 167.4 16.3 169 14-199 197-374 (412)
15 PRK15179 Vi polysaccharide bio 99.9 2.4E-21 5.1E-26 179.1 14.9 134 15-161 486-624 (694)
16 cd03821 GT1_Bme6_like This fam 99.9 6.4E-21 1.4E-25 160.0 16.0 169 14-199 174-346 (375)
17 TIGR02472 sucr_P_syn_N sucrose 99.9 6.3E-21 1.4E-25 168.6 14.8 174 14-199 212-407 (439)
18 PLN02501 digalactosyldiacylgly 99.9 7.7E-21 1.7E-25 172.9 14.9 164 13-199 516-682 (794)
19 PLN02846 digalactosyldiacylgly 99.8 1.8E-20 3.8E-25 166.1 14.9 161 13-198 198-363 (462)
20 cd04962 GT1_like_5 This family 99.8 3.3E-20 7.2E-25 158.4 15.5 165 14-199 168-337 (371)
21 PLN02939 transferase, transfer 99.8 3.4E-20 7.5E-25 173.6 16.6 142 14-159 728-887 (977)
22 cd04951 GT1_WbdM_like This fam 99.8 3.9E-20 8.5E-25 156.5 15.3 166 14-197 157-325 (360)
23 cd03800 GT1_Sucrose_synthase T 99.8 8.9E-20 1.9E-24 156.7 16.2 171 13-199 189-369 (398)
24 cd05844 GT1_like_7 Glycosyltra 99.8 7E-20 1.5E-24 156.2 15.4 158 15-199 169-337 (367)
25 PHA01633 putative glycosyl tra 99.8 8.1E-20 1.8E-24 156.2 15.0 132 14-163 116-258 (335)
26 cd03806 GT1_ALG11_like This fa 99.8 8.4E-20 1.8E-24 160.8 15.4 163 14-199 215-393 (419)
27 PLN02871 UDP-sulfoquinovose:DA 99.8 7.4E-20 1.6E-24 162.8 14.6 163 14-200 232-402 (465)
28 TIGR02468 sucrsPsyn_pln sucros 99.8 7.6E-20 1.6E-24 173.2 15.3 179 13-200 429-639 (1050)
29 cd03817 GT1_UGDG_like This fam 99.8 1.3E-19 2.9E-24 152.2 15.2 170 13-200 172-345 (374)
30 PRK09922 UDP-D-galactose:(gluc 99.8 1.4E-19 3.1E-24 155.6 14.8 137 53-200 180-326 (359)
31 cd03813 GT1_like_3 This family 99.8 7.8E-20 1.7E-24 163.3 13.3 162 14-200 270-444 (475)
32 PRK14098 glycogen synthase; Pr 99.8 2.4E-19 5.1E-24 160.8 16.2 141 14-159 257-412 (489)
33 cd03807 GT1_WbnK_like This fam 99.8 3.5E-19 7.6E-24 148.9 15.8 166 14-199 162-333 (365)
34 TIGR02470 sucr_synth sucrose s 99.8 2.9E-19 6.4E-24 166.0 15.7 175 15-196 501-707 (784)
35 cd03819 GT1_WavL_like This fam 99.8 6.7E-19 1.4E-23 149.1 16.5 169 14-196 151-328 (355)
36 PLN02316 synthase/transferase 99.8 5.5E-19 1.2E-23 167.7 17.0 143 14-159 790-950 (1036)
37 cd03816 GT1_ALG1_like This fam 99.8 6.6E-19 1.4E-23 154.8 15.7 140 51-198 230-381 (415)
38 PRK00654 glgA glycogen synthas 99.8 7.9E-19 1.7E-23 156.5 16.0 178 14-197 233-427 (466)
39 TIGR02918 accessory Sec system 99.8 7.8E-19 1.7E-23 157.8 14.9 133 54-197 320-466 (500)
40 TIGR02095 glgA glycogen/starch 99.8 1.3E-18 2.8E-23 155.1 16.1 179 14-197 241-436 (473)
41 TIGR02149 glgA_Coryne glycogen 99.8 1.4E-18 2.9E-23 149.8 15.5 167 14-199 172-353 (388)
42 KOG1111|consensus 99.8 4.6E-19 1E-23 149.4 11.7 127 14-159 172-302 (426)
43 PLN02949 transferase, transfer 99.8 9E-19 1.9E-23 156.1 14.3 140 54-198 269-422 (463)
44 PF00534 Glycos_transf_1: Glyc 99.8 4.5E-19 9.8E-24 136.8 10.5 151 41-199 3-159 (172)
45 PRK14099 glycogen synthase; Pr 99.8 1.6E-18 3.5E-23 155.3 15.5 138 14-158 245-399 (485)
46 cd03795 GT1_like_4 This family 99.8 3E-18 6.5E-23 144.8 15.5 166 12-199 161-333 (357)
47 PLN00142 sucrose synthase 99.8 2.2E-18 4.8E-23 160.4 15.8 174 15-195 524-729 (815)
48 TIGR03087 stp1 sugar transfera 99.8 1.2E-18 2.6E-23 151.8 13.2 158 14-200 199-364 (397)
49 cd04946 GT1_AmsK_like This fam 99.8 3.9E-18 8.4E-23 149.6 16.3 142 51-200 228-379 (407)
50 cd04949 GT1_gtfA_like This fam 99.8 1.4E-18 3.1E-23 149.2 13.3 158 14-199 183-346 (372)
51 cd03799 GT1_amsK_like This is 99.8 3.3E-18 7.1E-23 144.5 15.2 161 14-199 157-328 (355)
52 cd03822 GT1_ecORF704_like This 99.8 6E-18 1.3E-22 142.6 15.9 165 14-199 159-335 (366)
53 cd03814 GT1_like_2 This family 99.8 4.1E-18 9E-23 143.3 14.4 162 14-200 168-334 (364)
54 cd04955 GT1_like_6 This family 99.8 3.3E-18 7E-23 145.1 13.5 160 14-199 167-331 (363)
55 PLN02275 transferase, transfer 99.8 7.7E-18 1.7E-22 145.9 15.9 134 53-195 213-370 (371)
56 cd03801 GT1_YqgM_like This fam 99.8 6.9E-18 1.5E-22 140.3 15.1 168 13-199 170-342 (374)
57 cd03809 GT1_mtfB_like This fam 99.8 2.5E-18 5.4E-23 144.9 12.4 168 14-199 167-337 (365)
58 cd03820 GT1_amsD_like This fam 99.8 5.9E-18 1.3E-22 140.4 14.2 141 51-200 176-321 (348)
59 PHA01630 putative group 1 glyc 99.8 8.4E-18 1.8E-22 144.0 14.6 157 14-199 121-295 (331)
60 cd03811 GT1_WabH_like This fam 99.8 1.5E-17 3.3E-22 137.9 15.3 165 13-199 161-333 (353)
61 cd03791 GT1_Glycogen_synthase_ 99.8 1.3E-17 2.7E-22 148.4 15.4 178 14-196 246-440 (476)
62 cd03825 GT1_wcfI_like This fam 99.8 1.1E-17 2.3E-22 141.9 14.3 161 14-199 162-331 (365)
63 cd03788 GT1_TPS Trehalose-6-Ph 99.8 3.9E-18 8.4E-23 152.0 10.6 171 14-199 230-428 (460)
64 cd03798 GT1_wlbH_like This fam 99.8 4.6E-17 1E-21 135.9 16.5 169 13-200 173-346 (377)
65 cd03802 GT1_AviGT4_like This f 99.7 5.7E-17 1.2E-21 136.2 15.5 151 13-197 152-307 (335)
66 TIGR02400 trehalose_OtsA alpha 99.7 1.1E-17 2.4E-22 148.8 11.7 171 15-199 226-423 (456)
67 cd03794 GT1_wbuB_like This fam 99.7 7.8E-17 1.7E-21 135.6 14.9 167 14-199 191-366 (394)
68 cd03823 GT1_ExpE7_like This fa 99.7 9.7E-17 2.1E-21 134.5 15.2 158 13-200 168-331 (359)
69 cd03804 GT1_wbaZ_like This fam 99.7 7.4E-17 1.6E-21 137.6 14.3 147 14-199 177-327 (351)
70 cd03808 GT1_cap1E_like This fa 99.7 1.8E-16 4E-21 131.9 14.2 140 50-199 185-330 (359)
71 PRK05749 3-deoxy-D-manno-octul 99.7 6.2E-16 1.3E-20 136.0 15.2 153 41-200 223-390 (425)
72 PRK10125 putative glycosyl tra 99.7 3.5E-16 7.7E-21 137.3 9.3 119 14-161 215-339 (405)
73 PLN02605 monogalactosyldiacylg 99.6 5.6E-15 1.2E-19 128.5 14.9 147 41-198 194-347 (382)
74 cd04950 GT1_like_1 Glycosyltra 99.6 8.8E-15 1.9E-19 126.8 12.1 157 14-197 176-339 (373)
75 PF13692 Glyco_trans_1_4: Glyc 99.6 3.1E-15 6.6E-20 111.0 7.1 129 53-198 2-135 (135)
76 PRK13609 diacylglycerol glucos 99.6 6.1E-14 1.3E-18 121.5 14.6 145 41-199 190-339 (380)
77 PLN03063 alpha,alpha-trehalose 99.6 1.2E-14 2.5E-19 137.0 10.3 169 15-197 246-442 (797)
78 PRK13608 diacylglycerol glucos 99.6 1.2E-13 2.5E-18 120.7 15.9 167 7-199 170-339 (391)
79 PRK14501 putative bifunctional 99.6 8.8E-15 1.9E-19 137.0 8.7 170 14-199 231-429 (726)
80 cd03785 GT1_MurG MurG is an N- 99.5 9.8E-14 2.1E-18 118.2 13.2 161 14-199 155-325 (350)
81 cd01635 Glycosyltransferase_GT 99.5 2E-13 4.2E-18 107.6 11.9 102 58-161 111-214 (229)
82 TIGR02398 gluc_glyc_Psyn gluco 99.5 3.8E-13 8.2E-18 120.2 12.4 147 7-159 239-416 (487)
83 COG0438 RfaG Glycosyltransfera 99.5 1.5E-12 3.3E-17 106.5 14.7 139 54-199 200-343 (381)
84 cd03793 GT1_Glycogen_synthase_ 99.5 3.8E-13 8.2E-18 121.3 11.7 42 122-163 467-509 (590)
85 cd03786 GT1_UDP-GlcNAc_2-Epime 99.5 6.2E-13 1.3E-17 113.9 12.4 142 44-199 190-338 (363)
86 PRK00726 murG undecaprenyldiph 99.4 1.5E-12 3.3E-17 111.6 13.0 161 13-199 156-325 (357)
87 PRK00025 lpxB lipid-A-disaccha 99.4 1.5E-12 3.1E-17 112.6 12.8 149 41-200 174-343 (380)
88 TIGR01133 murG undecaprenyldip 99.4 1.2E-12 2.5E-17 111.5 11.9 163 14-200 153-323 (348)
89 TIGR00236 wecB UDP-N-acetylglu 99.4 2.9E-12 6.3E-17 110.5 13.9 144 41-199 187-335 (365)
90 TIGR00215 lpxB lipid-A-disacch 99.4 1.4E-11 2.9E-16 107.7 13.9 150 41-199 179-348 (385)
91 KOG0853|consensus 99.2 1.7E-10 3.6E-15 102.4 11.5 154 40-200 260-435 (495)
92 TIGR03713 acc_sec_asp1 accesso 99.1 4.2E-10 9.1E-15 101.8 10.9 136 54-199 322-489 (519)
93 COG0297 GlgA Glycogen synthase 99.0 6.7E-09 1.5E-13 92.9 15.0 115 40-159 279-399 (487)
94 KOG1387|consensus 99.0 1.5E-08 3.2E-13 86.0 12.9 149 42-197 257-423 (465)
95 TIGR02919 accessory Sec system 98.9 1.3E-08 2.9E-13 90.3 11.5 120 67-199 291-412 (438)
96 PLN03064 alpha,alpha-trehalose 98.8 2.7E-08 5.8E-13 94.9 11.5 138 15-157 330-493 (934)
97 PRK09814 beta-1,6-galactofuran 98.8 7.3E-08 1.6E-12 82.5 11.3 117 53-195 169-297 (333)
98 TIGR03492 conserved hypothetic 98.5 4E-06 8.7E-11 73.7 14.2 163 7-199 180-365 (396)
99 TIGR01426 MGT glycosyltransfer 98.4 1.4E-05 3.1E-10 69.6 14.6 133 52-199 225-360 (392)
100 PRK12446 undecaprenyldiphospho 98.4 1.6E-05 3.5E-10 68.8 14.6 164 7-199 154-326 (352)
101 COG1519 KdtA 3-deoxy-D-manno-o 98.4 1.9E-05 4.1E-10 69.0 14.8 148 40-196 220-383 (419)
102 COG0707 MurG UDP-N-acetylgluco 98.3 1.5E-05 3.3E-10 69.1 13.9 122 69-200 198-326 (357)
103 PF02684 LpxB: Lipid-A-disacch 98.3 7.5E-06 1.6E-10 71.4 11.7 169 7-199 153-341 (373)
104 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 4.6E-05 1E-09 66.3 15.4 135 7-159 167-307 (365)
105 cd03784 GT1_Gtf_like This fami 98.1 6.5E-05 1.4E-09 65.4 13.7 130 51-197 238-371 (401)
106 TIGR03590 PseG pseudaminic aci 98.1 2.8E-05 6E-10 65.2 9.4 93 54-159 172-267 (279)
107 TIGR02094 more_P_ylases alpha- 98.0 8.4E-05 1.8E-09 68.7 12.1 112 49-161 385-513 (601)
108 PLN03004 UDP-glycosyltransfera 97.9 0.00041 8.8E-09 62.1 14.3 101 51-159 269-379 (451)
109 KOG2941|consensus 97.9 0.00036 7.8E-09 59.8 12.4 140 49-197 251-404 (444)
110 PLN02410 UDP-glucoronosyl/UDP- 97.9 0.00062 1.3E-08 61.0 14.6 103 51-159 263-369 (451)
111 PLN02167 UDP-glycosyltransfera 97.8 0.0006 1.3E-08 61.4 13.7 102 51-159 279-385 (475)
112 PF00201 UDPGT: UDP-glucoronos 97.8 0.00026 5.5E-09 63.7 11.2 101 43-159 266-368 (500)
113 PHA03392 egt ecdysteroid UDP-g 97.8 0.0013 2.8E-08 59.8 15.4 94 51-159 295-391 (507)
114 PF13528 Glyco_trans_1_3: Glyc 97.8 0.00054 1.2E-08 57.7 12.1 119 52-192 192-314 (318)
115 PF05693 Glycogen_syn: Glycoge 97.8 6.6E-05 1.4E-09 68.5 6.8 39 122-160 462-501 (633)
116 PF13524 Glyco_trans_1_2: Glyc 97.8 3.3E-05 7.1E-10 53.5 3.8 62 133-200 2-64 (92)
117 PLN02210 UDP-glucosyl transfer 97.7 0.0014 3.1E-08 58.7 14.8 98 51-159 268-369 (456)
118 PLN02863 UDP-glucoronosyl/UDP- 97.7 0.0011 2.4E-08 59.8 13.6 101 50-159 281-388 (477)
119 PLN02562 UDP-glycosyltransfera 97.7 0.0014 3E-08 58.7 14.1 101 51-159 272-373 (448)
120 PLN02992 coniferyl-alcohol glu 97.7 0.0016 3.4E-08 58.9 14.3 101 51-159 262-383 (481)
121 PLN02448 UDP-glycosyltransfera 97.7 0.0022 4.8E-08 57.5 15.2 94 51-159 273-368 (459)
122 PF02350 Epimerase_2: UDP-N-ac 97.7 0.0002 4.3E-09 61.9 7.9 100 50-159 178-284 (346)
123 PLN02173 UDP-glucosyl transfer 97.6 0.0016 3.6E-08 58.2 13.9 100 50-159 262-362 (449)
124 PLN02555 limonoid glucosyltran 97.6 0.0024 5.3E-08 57.6 14.6 101 52-159 277-382 (480)
125 PLN00164 glucosyltransferase; 97.6 0.0028 6.2E-08 57.2 14.6 98 51-159 271-384 (480)
126 PLN02670 transferase, transfer 97.6 0.0028 6.1E-08 57.1 14.4 100 51-159 277-384 (472)
127 PLN02207 UDP-glycosyltransfera 97.6 0.0011 2.3E-08 59.7 11.5 102 51-159 274-377 (468)
128 COG0763 LpxB Lipid A disacchar 97.5 0.00038 8.2E-09 60.4 8.1 108 41-158 176-289 (381)
129 PLN02554 UDP-glycosyltransfera 97.5 0.0017 3.7E-08 58.6 12.3 102 51-159 273-387 (481)
130 cd04299 GT1_Glycogen_Phosphory 97.5 0.00071 1.5E-08 64.1 10.0 112 49-161 474-602 (778)
131 COG1819 Glycosyl transferases, 97.5 0.0033 7.1E-08 55.6 13.0 132 49-198 233-368 (406)
132 PLN02152 indole-3-acetate beta 97.4 0.0053 1.2E-07 55.1 14.3 100 51-159 260-372 (455)
133 PLN03007 UDP-glucosyltransfera 97.4 0.0053 1.1E-07 55.4 14.3 102 51-159 284-390 (482)
134 PRK10117 trehalose-6-phosphate 97.4 0.00057 1.2E-08 61.3 7.9 133 15-154 223-377 (474)
135 PRK01021 lpxB lipid-A-disaccha 97.4 0.0035 7.5E-08 57.8 12.8 145 41-199 401-572 (608)
136 PLN00414 glycosyltransferase f 97.4 0.0066 1.4E-07 54.3 14.4 100 50-159 250-357 (446)
137 TIGR00661 MJ1255 conserved hyp 97.4 0.00079 1.7E-08 57.3 8.2 86 110-199 229-315 (321)
138 PLN02764 glycosyltransferase f 97.4 0.0078 1.7E-07 54.0 14.4 101 50-160 255-363 (453)
139 COG0381 WecB UDP-N-acetylgluco 97.3 0.0062 1.3E-07 53.1 12.9 168 8-199 169-342 (383)
140 PLN02208 glycosyltransferase f 97.3 0.0082 1.8E-07 53.7 14.2 98 51-159 250-356 (442)
141 PLN03015 UDP-glucosyl transfer 97.3 0.003 6.5E-08 56.9 11.4 101 50-159 265-380 (470)
142 PF00982 Glyco_transf_20: Glyc 97.1 0.0017 3.8E-08 58.4 7.6 134 16-154 243-398 (474)
143 PLN02534 UDP-glycosyltransfera 97.1 0.021 4.5E-07 51.8 13.9 102 51-160 282-390 (491)
144 PLN02205 alpha,alpha-trehalose 96.9 0.0063 1.4E-07 58.6 9.7 146 5-153 289-460 (854)
145 PF04101 Glyco_tran_28_C: Glyc 96.9 0.0016 3.4E-08 50.0 4.6 84 110-198 55-144 (167)
146 PF07429 Glyco_transf_56: 4-al 96.8 0.019 4.1E-07 49.5 11.1 121 54-182 188-314 (360)
147 TIGR02195 heptsyl_trn_II lipop 96.7 0.032 6.9E-07 47.6 12.0 115 42-165 163-283 (334)
148 cd03789 GT1_LPS_heptosyltransf 96.6 0.017 3.7E-07 47.9 9.2 92 67-166 140-231 (279)
149 PF06258 Mito_fiss_Elm1: Mitoc 96.6 0.053 1.2E-06 46.3 12.1 102 56-161 153-258 (311)
150 PF05159 Capsule_synth: Capsul 96.5 0.011 2.4E-07 49.0 7.6 85 66-158 139-224 (269)
151 PRK10916 ADP-heptose:LPS hepto 96.5 0.045 9.8E-07 47.0 11.2 113 43-162 170-290 (348)
152 PRK02797 4-alpha-L-fucosyltran 96.3 0.05 1.1E-06 46.3 10.0 118 54-179 149-272 (322)
153 PRK10017 colanic acid biosynth 96.3 0.17 3.7E-06 45.1 13.9 93 98-199 296-393 (426)
154 COG3980 spsG Spore coat polysa 96.3 0.1 2.2E-06 43.9 11.5 90 54-156 161-250 (318)
155 PRK10422 lipopolysaccharide co 96.2 0.075 1.6E-06 45.7 11.3 109 47-163 179-292 (352)
156 COG4671 Predicted glycosyl tra 96.2 0.19 4.1E-06 43.6 12.9 140 50-196 217-363 (400)
157 COG0380 OtsA Trehalose-6-phosp 96.1 0.082 1.8E-06 47.7 11.2 135 14-152 247-402 (486)
158 KOG1192|consensus 96.1 0.091 2E-06 47.0 11.3 102 52-162 277-386 (496)
159 PF01075 Glyco_transf_9: Glyco 95.7 0.068 1.5E-06 43.3 8.4 118 43-168 96-218 (247)
160 TIGR02201 heptsyl_trn_III lipo 95.7 0.17 3.7E-06 43.3 11.0 95 62-163 193-290 (344)
161 PF04464 Glyphos_transf: CDP-G 95.5 0.086 1.9E-06 45.5 8.5 161 8-196 159-334 (369)
162 TIGR02193 heptsyl_trn_I lipopo 95.5 0.22 4.7E-06 42.1 10.7 97 62-168 191-289 (319)
163 PRK14089 ipid-A-disaccharide s 95.4 0.046 1E-06 47.4 6.5 92 50-158 165-260 (347)
164 PRK10964 ADP-heptose:LPS hepto 95.3 0.29 6.4E-06 41.4 11.1 94 63-166 191-286 (322)
165 TIGR03609 S_layer_CsaB polysac 94.7 0.7 1.5E-05 38.7 11.7 100 69-180 193-293 (298)
166 COG0859 RfaF ADP-heptose:LPS h 94.6 0.82 1.8E-05 39.2 12.1 100 53-162 176-280 (334)
167 PF10093 DUF2331: Uncharacteri 94.2 0.44 9.6E-06 41.7 9.5 108 40-157 168-287 (374)
168 PF10087 DUF2325: Uncharacteri 94.0 0.5 1.1E-05 33.0 7.8 75 85-161 2-84 (97)
169 PF04007 DUF354: Protein of un 93.9 0.53 1.1E-05 40.7 9.3 132 41-192 168-304 (335)
170 TIGR03837 efp_adjacent_2 conse 93.3 0.77 1.7E-05 40.0 9.2 106 43-157 170-285 (371)
171 COG4394 Uncharacterized protei 92.9 0.44 9.6E-06 40.2 6.8 104 42-157 166-281 (370)
172 COG2327 WcaK Polysaccharide py 92.4 1.8 4E-05 38.0 10.3 88 98-194 255-346 (385)
173 PF00343 Phosphorylase: Carboh 91.8 4.3 9.2E-05 38.6 12.6 112 49-162 440-579 (713)
174 PF10686 DUF2493: Protein of u 91.0 3.2 7E-05 27.4 8.1 62 50-114 1-63 (71)
175 PF15024 Glyco_transf_18: Glyc 89.1 2.2 4.7E-05 39.3 8.0 48 110-158 322-370 (559)
176 TIGR01012 Sa_S2_E_A ribosomal 89.0 2.7 5.8E-05 33.6 7.6 80 78-158 57-137 (196)
177 COG3660 Predicted nucleoside-d 88.2 10 0.00022 31.9 10.7 102 53-159 162-272 (329)
178 COG0058 GlgP Glucan phosphoryl 88.1 7.1 0.00015 37.3 10.9 113 49-162 483-613 (750)
179 PRK14986 glycogen phosphorylas 87.9 2.2 4.8E-05 41.0 7.6 112 49-162 539-678 (815)
180 cd05565 PTS_IIB_lactose PTS_II 87.7 4.3 9.2E-05 28.7 7.3 74 84-161 2-81 (99)
181 KOG3349|consensus 87.7 10 0.00022 29.2 9.6 105 54-168 5-116 (170)
182 PF06189 5-nucleotidase: 5'-nu 87.3 5.3 0.00011 33.3 8.6 85 68-158 18-108 (264)
183 TIGR02093 P_ylase glycogen/sta 87.0 2.4 5.3E-05 40.6 7.3 112 49-162 523-662 (794)
184 cd04300 GT1_Glycogen_Phosphory 86.9 2.5 5.4E-05 40.6 7.3 112 49-162 526-665 (797)
185 PF04230 PS_pyruv_trans: Polys 85.5 10 0.00022 30.1 9.5 45 111-159 239-283 (286)
186 PF09949 DUF2183: Uncharacteri 85.0 2.7 5.9E-05 29.8 5.1 65 46-113 22-93 (100)
187 PRK04020 rps2P 30S ribosomal p 84.5 6.1 0.00013 31.7 7.5 76 80-158 65-143 (204)
188 PRK13397 3-deoxy-7-phosphohept 83.6 11 0.00024 31.2 8.8 81 96-180 69-153 (250)
189 PF11071 DUF2872: Protein of u 83.4 3.5 7.7E-05 30.7 5.2 38 125-162 68-110 (141)
190 PRK14985 maltodextrin phosphor 82.7 3.8 8.2E-05 39.4 6.5 112 49-162 525-664 (798)
191 PLN02819 lysine-ketoglutarate 81.9 13 0.00028 37.1 9.9 70 85-159 608-679 (1042)
192 TIGR01361 DAHP_synth_Bsub phos 81.2 12 0.00027 31.0 8.4 81 95-179 78-162 (260)
193 TIGR03646 YtoQ_fam YtoQ family 81.0 7.4 0.00016 29.1 6.1 67 93-162 12-113 (144)
194 PTZ00254 40S ribosomal protein 80.8 5.1 0.00011 33.2 5.8 74 82-158 71-147 (249)
195 PRK10494 hypothetical protein; 80.1 9.3 0.0002 31.7 7.3 90 73-162 112-211 (259)
196 PRK12595 bifunctional 3-deoxy- 78.1 19 0.00042 31.4 8.9 62 96-161 172-234 (360)
197 COG3563 KpsC Capsule polysacch 77.8 7.4 0.00016 35.4 6.2 84 67-159 166-251 (671)
198 COG1817 Uncharacterized protei 77.8 31 0.00067 29.7 9.7 69 122-199 245-315 (346)
199 TIGR00853 pts-lac PTS system, 77.1 14 0.0003 25.7 6.4 75 83-161 4-84 (95)
200 TIGR02717 AcCoA-syn-alpha acet 77.0 30 0.00065 31.0 10.1 99 97-197 165-289 (447)
201 COG0673 MviM Predicted dehydro 76.9 22 0.00048 29.9 9.0 76 74-158 20-97 (342)
202 PF10649 DUF2478: Protein of u 76.7 5 0.00011 31.0 4.4 58 128-188 92-156 (159)
203 PF03435 Saccharop_dh: Sacchar 76.5 11 0.00024 32.7 7.1 84 71-159 11-98 (386)
204 PF01113 DapB_N: Dihydrodipico 75.4 3.4 7.4E-05 30.1 3.1 40 121-160 59-100 (124)
205 TIGR03586 PseI pseudaminic aci 75.3 29 0.00064 29.9 9.2 83 94-180 78-164 (327)
206 PRK13398 3-deoxy-7-phosphohept 74.9 24 0.00051 29.5 8.3 107 67-179 41-164 (266)
207 TIGR01501 MthylAspMutase methy 74.4 33 0.00072 25.6 8.5 56 69-127 69-128 (134)
208 cd05564 PTS_IIB_chitobiose_lic 73.7 15 0.00032 25.5 5.9 64 96-163 17-82 (96)
209 COG0052 RpsB Ribosomal protein 73.1 47 0.001 27.6 9.3 57 51-107 27-89 (252)
210 TIGR00640 acid_CoA_mut_C methy 72.6 25 0.00054 26.0 7.2 53 69-126 69-122 (132)
211 PRK06015 keto-hydroxyglutarate 72.5 20 0.00044 28.6 7.1 61 96-160 87-152 (201)
212 PF01488 Shikimate_DH: Shikima 72.0 6.4 0.00014 29.0 3.9 91 48-153 9-99 (135)
213 cd01080 NAD_bind_m-THF_DH_Cycl 71.3 16 0.00034 28.3 6.0 70 66-139 24-97 (168)
214 PF01408 GFO_IDH_MocA: Oxidore 69.3 36 0.00078 23.8 7.3 75 74-158 17-92 (120)
215 PRK13396 3-deoxy-7-phosphohept 69.2 37 0.0008 29.7 8.4 90 67-162 115-218 (352)
216 PF11238 DUF3039: Protein of u 68.9 3.7 8E-05 26.0 1.7 21 143-163 15-35 (58)
217 PRK05749 3-deoxy-D-manno-octul 68.5 57 0.0012 28.4 9.8 105 51-160 49-155 (425)
218 PRK10834 vancomycin high tempe 68.4 19 0.00042 29.6 6.2 89 70-159 70-168 (239)
219 TIGR02802 Pal_lipo peptidoglyc 68.2 20 0.00043 24.9 5.6 52 67-118 16-80 (104)
220 TIGR03569 NeuB_NnaB N-acetylne 66.8 28 0.0006 30.1 7.2 82 93-178 76-161 (329)
221 PF06189 5-nucleotidase: 5'-nu 66.4 41 0.00089 28.1 7.8 85 67-157 167-256 (264)
222 PRK05718 keto-hydroxyglutarate 65.8 34 0.00073 27.6 7.1 16 67-82 51-66 (212)
223 TIGR00725 conserved hypothetic 64.8 16 0.00035 28.0 4.9 65 126-192 88-158 (159)
224 TIGR03682 arCOG04112 arCOG0411 64.4 13 0.00027 31.8 4.6 71 82-158 213-289 (308)
225 PRK08673 3-deoxy-7-phosphohept 64.3 59 0.0013 28.1 8.7 80 96-179 147-230 (335)
226 KOG0832|consensus 64.2 32 0.00069 28.2 6.6 29 131-159 175-203 (251)
227 cd00316 Oxidoreductase_nitroge 63.9 48 0.001 28.7 8.3 92 65-159 129-231 (399)
228 PRK00048 dihydrodipicolinate r 63.8 74 0.0016 26.1 9.0 37 122-158 53-90 (257)
229 PRK05331 putative phosphate ac 63.5 26 0.00056 30.3 6.4 50 64-117 13-62 (334)
230 TIGR01761 thiaz-red thiazoliny 63.4 59 0.0013 28.2 8.6 70 77-158 21-96 (343)
231 TIGR02853 spore_dpaA dipicolin 63.2 47 0.001 27.9 7.8 107 82-192 151-280 (287)
232 PF02698 DUF218: DUF218 domain 63.2 17 0.00038 27.0 4.8 93 64-156 20-125 (155)
233 PRK04207 glyceraldehyde-3-phos 63.0 86 0.0019 27.0 9.6 78 77-161 20-111 (341)
234 TIGR00036 dapB dihydrodipicoli 62.5 36 0.00079 28.2 7.0 33 128-160 67-101 (266)
235 PRK10310 PTS system galactitol 62.1 49 0.0011 22.8 9.0 51 84-138 4-59 (94)
236 COG0373 HemA Glutamyl-tRNA red 61.7 86 0.0019 28.0 9.4 19 119-137 228-246 (414)
237 cd01425 RPS2 Ribosomal protein 60.7 81 0.0018 24.8 8.9 78 82-159 56-157 (193)
238 CHL00073 chlN photochlorophyll 60.7 1E+02 0.0022 28.0 9.8 72 84-159 195-268 (457)
239 PF01081 Aldolase: KDPG and KH 60.1 16 0.00035 29.1 4.3 81 67-156 44-125 (196)
240 COG1152 CdhA CO dehydrogenase/ 59.8 31 0.00068 32.2 6.4 34 129-162 301-334 (772)
241 PRK08618 ornithine cyclodeamin 59.7 26 0.00056 29.9 5.8 32 126-158 189-220 (325)
242 PF01531 Glyco_transf_11: Glyc 59.3 66 0.0014 27.1 8.1 63 67-136 191-254 (298)
243 PRK13302 putative L-aspartate 58.7 66 0.0014 26.7 7.9 68 80-158 29-97 (271)
244 cd01967 Nitrogenase_MoFe_alpha 58.3 60 0.0013 28.4 8.0 90 65-157 137-236 (406)
245 COG5153 CVT17 Putative lipase 57.4 11 0.00023 32.3 2.8 45 121-165 267-313 (425)
246 KOG4540|consensus 57.4 11 0.00023 32.3 2.8 45 121-165 267-313 (425)
247 PRK05395 3-dehydroquinate dehy 57.1 33 0.00072 26.1 5.2 59 96-157 33-98 (146)
248 cd01971 Nitrogenase_VnfN_like 56.7 1.3E+02 0.0027 26.8 9.8 93 64-159 133-238 (427)
249 TIGR01182 eda Entner-Doudoroff 56.7 78 0.0017 25.3 7.7 61 96-160 91-156 (204)
250 COG1519 KdtA 3-deoxy-D-manno-o 56.2 1.5E+02 0.0033 26.5 11.1 116 41-161 32-155 (419)
251 PRK06091 membrane protein FdrA 56.0 86 0.0019 29.1 8.6 94 96-197 207-317 (555)
252 PRK05954 precorrin-8X methylmu 55.5 1.1E+02 0.0023 24.6 9.4 44 64-108 104-147 (203)
253 PF01555 N6_N4_Mtase: DNA meth 54.6 23 0.0005 27.6 4.4 30 128-158 190-219 (231)
254 TIGR03759 conj_TIGR03759 integ 54.5 70 0.0015 25.6 6.9 48 65-113 119-166 (200)
255 COG2885 OmpA Outer membrane pr 54.4 65 0.0014 25.0 6.9 51 68-118 100-163 (190)
256 TIGR00272 DPH2 diphthamide bio 53.9 25 0.00055 32.1 4.9 72 82-158 282-359 (496)
257 PRK13940 glutamyl-tRNA reducta 53.8 54 0.0012 29.2 6.9 80 75-158 174-270 (414)
258 PF00533 BRCT: BRCA1 C Terminu 53.6 34 0.00075 21.7 4.5 65 81-158 7-71 (78)
259 PRK10802 peptidoglycan-associa 53.2 48 0.001 25.7 5.8 52 67-118 85-149 (173)
260 cd05566 PTS_IIB_galactitol PTS 51.8 69 0.0015 21.3 6.4 62 84-157 2-68 (89)
261 TIGR03845 sulfopyru_alph sulfo 51.5 39 0.00085 25.7 5.0 46 143-188 74-131 (157)
262 PF04954 SIP: Siderophore-inte 51.5 34 0.00075 24.5 4.5 51 66-117 64-115 (119)
263 PRK02261 methylaspartate mutas 51.4 98 0.0021 22.9 8.7 57 67-127 69-130 (137)
264 COG0062 Uncharacterized conser 51.2 1.3E+02 0.0028 24.2 12.2 111 41-159 38-158 (203)
265 TIGR01088 aroQ 3-dehydroquinat 51.1 53 0.0012 24.8 5.5 59 96-157 31-96 (141)
266 PRK05198 2-dehydro-3-deoxyphos 51.1 1.3E+02 0.0029 25.1 8.3 63 96-162 71-134 (264)
267 COG2099 CobK Precorrin-6x redu 51.1 1.1E+02 0.0023 25.6 7.7 50 110-159 45-100 (257)
268 PRK10017 colanic acid biosynth 50.8 1.5E+02 0.0032 26.5 9.3 35 56-90 6-41 (426)
269 PF03016 Exostosin: Exostosin 50.1 23 0.0005 29.2 3.9 40 121-160 228-269 (302)
270 TIGR02990 ectoine_eutA ectoine 49.9 1.4E+02 0.0031 24.4 10.6 100 74-180 112-229 (239)
271 TIGR01283 nifE nitrogenase mol 49.8 73 0.0016 28.6 7.2 72 83-157 198-273 (456)
272 PRK09590 celB cellobiose phosp 49.3 93 0.002 22.0 6.4 73 84-160 3-83 (104)
273 PF00148 Oxidored_nitro: Nitro 49.2 1.6E+02 0.0036 25.5 9.2 112 41-158 98-222 (398)
274 TIGR00322 diphth2_R diphthamid 49.2 32 0.0007 29.7 4.6 72 82-158 233-310 (332)
275 cd06303 PBP1_LuxPQ_Quorum_Sens 48.9 1.3E+02 0.0027 24.4 8.1 12 144-155 228-239 (280)
276 PRK07742 phosphate butyryltran 48.2 1.3E+02 0.0028 25.4 8.2 66 66-136 25-97 (299)
277 PF03088 Str_synth: Strictosid 48.2 11 0.00024 26.1 1.3 21 3-23 45-65 (89)
278 PRK05805 phosphate butyryltran 47.6 70 0.0015 27.1 6.4 65 66-135 27-97 (301)
279 cd01968 Nitrogenase_NifE_I Nit 47.4 85 0.0019 27.6 7.2 74 82-158 158-235 (410)
280 COG4302 EutC Ethanolamine ammo 46.3 60 0.0013 27.0 5.5 86 64-151 142-240 (294)
281 PRK06270 homoserine dehydrogen 45.8 1.7E+02 0.0036 25.2 8.6 32 128-159 88-125 (341)
282 PRK05447 1-deoxy-D-xylulose 5- 45.8 1.4E+02 0.003 26.5 8.0 46 113-159 76-122 (385)
283 cd05312 NAD_bind_1_malic_enz N 45.7 1.2E+02 0.0025 25.7 7.3 35 123-157 97-137 (279)
284 PRK10510 putative outer membra 45.5 83 0.0018 25.4 6.3 51 68-118 129-192 (219)
285 PF04413 Glycos_transf_N: 3-De 45.2 40 0.00087 26.4 4.3 89 69-161 37-127 (186)
286 PRK11891 aspartate carbamoyltr 45.2 2.3E+02 0.005 25.5 9.9 109 11-137 202-316 (429)
287 PRK13015 3-dehydroquinate dehy 44.8 65 0.0014 24.5 5.1 59 96-157 33-98 (146)
288 PRK02910 light-independent pro 44.4 2.4E+02 0.0053 25.8 9.8 72 83-157 159-238 (519)
289 PRK00421 murC UDP-N-acetylmura 43.9 1.9E+02 0.0042 25.7 9.0 87 53-158 9-96 (461)
290 cd02071 MM_CoA_mut_B12_BD meth 43.8 1.2E+02 0.0026 21.7 7.2 49 74-127 72-120 (122)
291 cd01965 Nitrogenase_MoFe_beta_ 43.7 1.4E+02 0.0031 26.3 8.1 74 83-159 156-252 (428)
292 cd03129 GAT1_Peptidase_E_like 43.1 1.6E+02 0.0035 23.1 8.6 82 81-163 28-126 (210)
293 TIGR03789 pdsO proteobacterial 43.0 85 0.0018 25.8 6.0 51 68-118 152-215 (239)
294 PRK05782 bifunctional sirohydr 43.0 2.2E+02 0.0047 24.7 8.8 41 65-108 241-281 (335)
295 PRK08745 ribulose-phosphate 3- 42.8 1.4E+02 0.003 24.2 7.2 84 40-134 53-137 (223)
296 cd07185 OmpA_C-like Peptidogly 42.6 1.1E+02 0.0023 20.8 6.0 52 67-118 18-82 (106)
297 PRK00676 hemA glutamyl-tRNA re 42.6 1.8E+02 0.0038 25.3 8.1 54 80-136 172-233 (338)
298 TIGR01278 DPOR_BchB light-inde 42.1 2.7E+02 0.0059 25.4 10.8 71 84-157 160-238 (511)
299 PRK13846 putative glycerol-3-p 42.0 1.1E+02 0.0023 26.4 6.6 48 64-116 14-64 (316)
300 cd01972 Nitrogenase_VnfE_like 42.0 1.5E+02 0.0033 26.2 8.0 72 84-158 163-243 (426)
301 PRK08286 cbiC cobalt-precorrin 41.9 1.9E+02 0.0041 23.5 8.9 39 69-108 120-158 (214)
302 COG3737 Uncharacterized conser 41.8 56 0.0012 24.0 4.2 45 64-108 51-98 (127)
303 cd00027 BRCT Breast Cancer Sup 41.5 77 0.0017 18.9 7.8 61 83-157 2-63 (72)
304 PF12738 PTCB-BRCT: twin BRCT 41.5 85 0.0018 19.4 5.0 59 84-157 2-60 (63)
305 KOG1050|consensus 41.4 92 0.002 30.0 6.7 132 16-152 244-396 (732)
306 COG0621 MiaB 2-methylthioadeni 41.4 97 0.0021 27.9 6.5 54 67-122 280-339 (437)
307 PF01012 ETF: Electron transfe 41.1 67 0.0015 24.1 4.9 89 68-158 19-120 (164)
308 TIGR01362 KDO8P_synth 3-deoxy- 41.1 2.1E+02 0.0046 23.9 8.3 63 96-162 63-126 (258)
309 COG3414 SgaB Phosphotransferas 40.5 52 0.0011 22.9 3.8 50 84-137 3-57 (93)
310 KOG2648|consensus 40.1 60 0.0013 29.2 4.9 76 83-161 268-359 (453)
311 cd01078 NAD_bind_H4MPT_DH NADP 40.0 1.7E+02 0.0037 22.5 7.5 55 82-140 52-108 (194)
312 PF02302 PTS_IIB: PTS system, 39.5 1.1E+02 0.0024 20.2 5.4 66 85-157 2-72 (90)
313 COG4850 Uncharacterized conser 39.5 58 0.0013 28.2 4.6 32 73-104 268-300 (373)
314 PF01866 Diphthamide_syn: Puta 39.4 24 0.00053 29.9 2.4 82 72-158 199-287 (307)
315 PRK08005 epimerase; Validated 39.4 1.8E+02 0.0038 23.4 7.2 39 96-135 96-134 (210)
316 PF00389 2-Hacid_dh: D-isomer 39.4 1.4E+02 0.0031 21.4 7.3 49 112-161 21-69 (133)
317 PRK08285 cobH precorrin-8X met 39.3 2E+02 0.0044 23.1 9.1 44 64-108 110-153 (208)
318 PF13607 Succ_CoA_lig: Succiny 39.2 83 0.0018 23.4 5.0 94 96-193 15-136 (138)
319 PRK07114 keto-hydroxyglutarate 39.1 1.8E+02 0.004 23.6 7.3 62 95-161 101-167 (222)
320 TIGR03609 S_layer_CsaB polysac 39.1 2.2E+02 0.0048 23.5 10.0 92 54-158 2-105 (298)
321 PRK14327 (dimethylallyl)adenos 38.6 1.2E+02 0.0026 27.8 6.9 51 67-119 347-403 (509)
322 COG0320 LipA Lipoate synthase 38.3 2.5E+02 0.0054 23.9 8.5 60 42-103 107-170 (306)
323 TIGR01851 argC_other N-acetyl- 37.8 63 0.0014 27.7 4.6 36 126-161 46-82 (310)
324 PF00691 OmpA: OmpA family; I 37.5 1.2E+02 0.0027 20.2 5.6 50 68-118 15-79 (97)
325 PRK14331 (dimethylallyl)adenos 37.5 1.2E+02 0.0026 27.0 6.6 51 67-119 280-336 (437)
326 KOG3742|consensus 37.3 11 0.00024 34.2 -0.1 38 122-159 493-531 (692)
327 PRK09722 allulose-6-phosphate 37.0 1.8E+02 0.004 23.7 7.1 40 96-136 98-137 (229)
328 COG4370 Uncharacterized protei 36.9 28 0.0006 30.1 2.3 77 120-200 302-381 (412)
329 COG0281 SfcA Malic enzyme [Ene 36.9 2.3E+02 0.0049 25.5 8.0 87 69-157 186-297 (432)
330 cd00466 DHQase_II Dehydroquina 36.9 93 0.002 23.5 4.9 59 96-157 31-96 (140)
331 PRK06264 cbiC precorrin-8X met 36.8 2.3E+02 0.0049 22.9 9.4 40 68-108 114-153 (210)
332 TIGR02356 adenyl_thiF thiazole 36.8 2.1E+02 0.0045 22.5 7.3 42 117-158 99-142 (202)
333 COG1887 TagB Putative glycosyl 36.7 3E+02 0.0065 24.3 13.2 71 120-196 277-351 (388)
334 cd07420 MPP_RdgC Drosophila me 36.6 1.3E+02 0.0029 25.8 6.4 8 83-90 80-87 (321)
335 cd05311 NAD_bind_2_malic_enz N 36.5 2.1E+02 0.0047 23.0 7.4 30 127-157 95-125 (226)
336 cd06295 PBP1_CelR Ligand bindi 36.3 2.2E+02 0.0047 22.6 8.2 14 145-158 80-93 (275)
337 PRK13699 putative methylase; P 36.1 82 0.0018 25.5 4.9 30 129-159 163-192 (227)
338 PRK13111 trpA tryptophan synth 36.0 2.5E+02 0.0054 23.2 11.7 23 68-90 75-97 (258)
339 TIGR03855 NAD_NadX aspartate d 36.0 1.8E+02 0.0038 23.7 6.8 65 83-158 2-67 (229)
340 PF06506 PrpR_N: Propionate ca 36.0 72 0.0016 24.5 4.4 15 143-157 134-148 (176)
341 cd00762 NAD_bind_malic_enz NAD 35.8 1.5E+02 0.0032 24.7 6.4 35 123-157 98-138 (254)
342 PRK05299 rpsB 30S ribosomal pr 35.8 2.6E+02 0.0055 23.3 8.9 30 129-158 157-186 (258)
343 TIGR01862 N2-ase-Ialpha nitrog 35.4 2.5E+02 0.0054 25.1 8.3 74 83-159 192-269 (443)
344 cd01981 Pchlide_reductase_B Pc 35.3 2.4E+02 0.0052 24.9 8.2 73 83-158 163-243 (430)
345 PF01118 Semialdhyde_dh: Semia 35.2 81 0.0018 22.4 4.3 84 73-162 15-100 (121)
346 PRK14573 bifunctional D-alanyl 35.2 2.2E+02 0.0048 27.5 8.4 85 54-157 7-92 (809)
347 PRK08883 ribulose-phosphate 3- 35.1 2.1E+02 0.0046 23.0 7.1 67 64-135 68-134 (220)
348 PRK10499 PTS system N,N'-diace 34.9 1.4E+02 0.0031 21.0 5.5 73 84-160 5-81 (106)
349 PF02602 HEM4: Uroporphyrinoge 34.7 1.1E+02 0.0024 24.0 5.5 103 79-189 114-230 (231)
350 PRK14336 (dimethylallyl)adenos 34.4 1.8E+02 0.0039 25.8 7.2 51 67-119 259-315 (418)
351 CHL00200 trpA tryptophan synth 34.3 2.7E+02 0.0059 23.1 10.0 139 38-185 81-233 (263)
352 cd05212 NAD_bind_m-THF_DH_Cycl 34.0 2E+02 0.0043 21.4 7.1 65 69-137 11-79 (140)
353 TIGR01809 Shik-DH-AROM shikima 34.0 1.4E+02 0.0031 24.8 6.2 57 81-140 124-201 (282)
354 PRK14340 (dimethylallyl)adenos 33.8 1.6E+02 0.0035 26.4 6.8 51 67-119 283-339 (445)
355 TIGR01286 nifK nitrogenase mol 33.7 2.8E+02 0.0062 25.5 8.5 115 42-159 167-316 (515)
356 PRK09653 eutD phosphotransacet 33.6 1.9E+02 0.0041 24.7 7.0 47 66-117 25-71 (324)
357 PRK12549 shikimate 5-dehydroge 33.6 1.1E+02 0.0025 25.5 5.5 47 69-118 114-160 (284)
358 PRK14335 (dimethylallyl)adenos 33.5 1.6E+02 0.0036 26.4 6.9 52 67-120 293-350 (455)
359 PF03447 NAD_binding_3: Homose 33.3 29 0.00063 24.5 1.7 38 121-159 52-90 (117)
360 PRK08610 fructose-bisphosphate 33.3 69 0.0015 27.1 4.1 65 46-114 167-232 (286)
361 PRK08291 ectoine utilization p 33.3 1.4E+02 0.003 25.5 6.1 75 81-157 130-225 (330)
362 cd06259 YdcF-like YdcF-like. Y 33.2 1E+02 0.0022 22.6 4.7 84 70-153 23-119 (150)
363 PRK08300 acetaldehyde dehydrog 33.2 2.8E+02 0.0061 23.6 7.8 72 80-158 26-100 (302)
364 COG1440 CelA Phosphotransferas 33.0 1.8E+02 0.0039 20.7 6.2 72 84-159 3-80 (102)
365 PF03102 NeuB: NeuB family; I 32.9 1.5E+02 0.0031 24.4 5.9 81 94-179 57-142 (241)
366 PRK14332 (dimethylallyl)adenos 32.8 1.6E+02 0.0035 26.4 6.7 52 67-120 286-343 (449)
367 TIGR01082 murC UDP-N-acetylmur 32.8 2.5E+02 0.0054 24.9 7.9 76 70-158 12-88 (448)
368 PRK12457 2-dehydro-3-deoxyphos 32.6 3.1E+02 0.0067 23.2 8.3 64 96-163 77-141 (281)
369 PF04430 DUF498: Protein of un 32.6 58 0.0013 23.1 3.1 39 70-108 41-82 (110)
370 KOG0830|consensus 32.6 2.9E+02 0.0062 22.9 9.6 104 50-159 13-119 (254)
371 PRK08306 dipicolinate synthase 32.6 1.5E+02 0.0033 24.9 6.1 98 81-182 151-270 (296)
372 TIGR02706 P_butyryltrans phosp 32.5 1.6E+02 0.0035 24.8 6.3 67 66-137 23-95 (294)
373 PRK14338 (dimethylallyl)adenos 32.4 2E+02 0.0044 25.8 7.2 51 67-119 290-346 (459)
374 PRK13845 putative glycerol-3-p 32.1 1.8E+02 0.004 26.2 6.7 50 63-117 105-162 (437)
375 TIGR01574 miaB-methiolase tRNA 31.9 1.9E+02 0.0041 25.8 6.9 51 67-119 282-338 (438)
376 PF14529 Exo_endo_phos_2: Endo 31.9 95 0.0021 21.3 4.2 52 56-107 3-68 (119)
377 COG4641 Uncharacterized protei 31.7 58 0.0013 28.6 3.5 82 110-199 237-328 (373)
378 TIGR02015 BchY chlorophyllide 31.7 3.4E+02 0.0074 24.1 8.5 69 84-157 167-237 (422)
379 PRK14478 nitrogenase molybdenu 31.5 2.7E+02 0.0059 25.1 8.0 72 83-157 192-267 (475)
380 COG1135 AbcC ABC-type metal io 31.5 3.5E+02 0.0076 23.5 8.7 126 46-200 26-161 (339)
381 COG3613 Nucleoside 2-deoxyribo 31.4 1.6E+02 0.0035 23.0 5.5 35 126-160 65-106 (172)
382 PRK14328 (dimethylallyl)adenos 31.2 1.6E+02 0.0034 26.3 6.3 51 67-119 282-338 (439)
383 PLN02527 aspartate carbamoyltr 31.1 3.3E+02 0.0072 23.1 9.3 105 12-136 117-225 (306)
384 PRK12311 rpsB 30S ribosomal pr 31.0 3.5E+02 0.0076 23.4 9.0 30 130-159 153-182 (326)
385 PLN03033 2-dehydro-3-deoxyphos 30.8 2.8E+02 0.0062 23.5 7.3 81 96-180 77-161 (290)
386 PF01220 DHquinase_II: Dehydro 30.8 88 0.0019 23.6 3.9 59 96-157 32-97 (140)
387 cd05568 PTS_IIB_bgl_like PTS_I 30.8 1.5E+02 0.0033 19.1 6.1 62 84-157 2-65 (85)
388 COG3473 Maleate cis-trans isom 30.1 1.7E+02 0.0036 23.9 5.5 76 97-179 134-226 (238)
389 COG0036 Rpe Pentose-5-phosphat 30.1 3E+02 0.0066 22.4 7.5 67 66-137 73-139 (220)
390 PRK11199 tyrA bifunctional cho 30.0 1.6E+02 0.0036 25.6 6.1 55 83-140 99-153 (374)
391 TIGR02932 vnfK_nitrog V-contai 30.0 3.7E+02 0.0081 24.2 8.5 92 64-158 145-260 (457)
392 PRK12862 malic enzyme; Reviewe 29.7 3.1E+02 0.0066 26.7 8.2 86 69-157 180-289 (763)
393 PRK05678 succinyl-CoA syntheta 29.6 3.5E+02 0.0075 22.9 9.6 98 97-197 160-289 (291)
394 KOG1387|consensus 29.5 3.1E+02 0.0067 24.4 7.4 108 50-158 40-178 (465)
395 cd00133 PTS_IIB PTS_IIB: subun 29.5 1.5E+02 0.0032 18.6 5.1 52 95-158 17-68 (84)
396 PF15608 PELOTA_1: PELOTA RNA 29.4 2.1E+02 0.0045 20.3 6.2 64 41-119 26-90 (100)
397 PRK08190 bifunctional enoyl-Co 29.3 1.6E+02 0.0035 26.6 6.1 66 66-136 186-257 (466)
398 PRK08328 hypothetical protein; 29.2 1.8E+02 0.0039 23.5 5.8 45 115-159 104-150 (231)
399 PRK05953 precorrin-8X methylmu 28.9 3.1E+02 0.0067 22.1 9.1 44 64-108 102-145 (208)
400 PRK11524 putative methyltransf 28.9 1.2E+02 0.0026 25.2 4.9 30 129-159 208-237 (284)
401 PRK14175 bifunctional 5,10-met 28.7 3.6E+02 0.0078 22.8 7.7 69 66-138 138-210 (286)
402 COG2875 CobM Precorrin-4 methy 28.7 3.4E+02 0.0074 22.5 9.5 109 83-196 3-123 (254)
403 COG0289 DapB Dihydrodipicolina 28.6 2.8E+02 0.006 23.3 6.8 37 124-160 64-102 (266)
404 COG1126 GlnQ ABC-type polar am 28.6 3.4E+02 0.0073 22.4 8.7 115 82-200 28-156 (240)
405 PF01170 UPF0020: Putative RNA 28.5 69 0.0015 24.8 3.2 26 130-156 29-54 (179)
406 COG4294 Uve UV damage repair e 28.3 1.1E+02 0.0025 26.2 4.5 64 45-108 165-232 (347)
407 cd01976 Nitrogenase_MoFe_alpha 28.3 3.3E+02 0.0072 24.1 7.8 73 83-158 173-249 (421)
408 cd01840 SGNH_hydrolase_yrhL_li 28.1 2.4E+02 0.0052 20.6 6.0 61 53-117 24-87 (150)
409 PRK14339 (dimethylallyl)adenos 28.0 2.5E+02 0.0053 24.9 7.0 51 67-119 265-321 (420)
410 cd01973 Nitrogenase_VFe_beta_l 28.0 3.2E+02 0.0069 24.6 7.7 92 64-158 142-256 (454)
411 PRK07998 gatY putative fructos 27.9 1.3E+02 0.0029 25.4 4.9 66 45-115 163-229 (283)
412 PF01936 NYN: NYN domain; Int 27.4 1.2E+02 0.0025 21.8 4.1 65 63-135 76-144 (146)
413 COG2185 Sbm Methylmalonyl-CoA 27.4 2.8E+02 0.006 21.0 9.9 93 95-192 29-133 (143)
414 PF06925 MGDG_synth: Monogalac 27.4 93 0.002 23.5 3.7 21 96-116 146-166 (169)
415 cd06212 monooxygenase_like The 27.1 85 0.0018 24.8 3.6 17 71-87 150-166 (232)
416 PRK06886 hypothetical protein; 26.9 4.1E+02 0.0089 22.8 7.9 94 65-160 159-281 (329)
417 PF03949 Malic_M: Malic enzyme 26.9 1.8E+02 0.0039 24.2 5.5 35 123-157 98-138 (255)
418 PF13701 DDE_Tnp_1_4: Transpos 26.7 4.1E+02 0.009 23.9 8.2 44 65-108 199-243 (448)
419 TIGR01858 tag_bisphos_ald clas 26.7 1E+02 0.0023 26.0 4.1 67 46-116 164-231 (282)
420 PF07801 DUF1647: Protein of u 26.7 2.5E+02 0.0055 21.2 5.8 51 51-103 59-109 (142)
421 PRK00436 argC N-acetyl-gamma-g 26.6 2.6E+02 0.0057 24.0 6.7 36 127-162 66-102 (343)
422 COG0039 Mdh Malate/lactate deh 26.5 4.1E+02 0.0089 22.8 7.7 65 51-118 69-145 (313)
423 cd06302 PBP1_LsrB_Quorum_Sensi 26.4 3.6E+02 0.0077 22.0 8.1 46 71-118 174-219 (298)
424 PRK12861 malic enzyme; Reviewe 26.4 2E+02 0.0044 27.9 6.4 86 69-157 176-285 (764)
425 TIGR00288 conserved hypothetic 26.4 2.1E+02 0.0046 22.0 5.4 61 68-136 93-155 (160)
426 cd06187 O2ase_reductase_like T 26.2 91 0.002 24.4 3.6 51 69-119 143-200 (224)
427 PF02504 FA_synthesis: Fatty a 26.0 1.1E+02 0.0025 26.3 4.3 49 64-116 12-61 (323)
428 cd01980 Chlide_reductase_Y Chl 25.6 4.7E+02 0.01 23.1 9.2 69 84-157 161-231 (416)
429 PRK06141 ornithine cyclodeamin 25.5 2.6E+02 0.0055 23.7 6.4 74 81-157 124-216 (314)
430 PRK05481 lipoyl synthase; Prov 25.4 3.3E+02 0.0071 22.8 6.9 51 66-119 179-235 (289)
431 TIGR01578 MiaB-like-B MiaB-lik 25.3 3E+02 0.0064 24.4 7.0 51 67-119 268-324 (420)
432 PF04208 MtrA: Tetrahydrometha 25.1 3.4E+02 0.0074 21.3 7.0 80 49-133 38-129 (176)
433 KOG2882|consensus 25.0 1.9E+02 0.0041 24.8 5.3 51 68-124 206-256 (306)
434 COG1736 DPH2 Diphthamide synth 25.0 4.1E+02 0.0089 23.2 7.5 60 96-160 257-317 (347)
435 CHL00067 rps2 ribosomal protei 24.9 84 0.0018 25.6 3.2 31 129-159 161-191 (230)
436 cd05197 GH4_glycoside_hydrolas 24.8 2.3E+02 0.0049 25.4 6.1 79 54-141 3-86 (425)
437 cd01574 PBP1_LacI Ligand-bindi 24.7 3.2E+02 0.007 21.4 6.6 49 67-118 15-66 (264)
438 PF13788 DUF4180: Domain of un 24.7 1.8E+02 0.004 21.0 4.5 45 73-118 58-106 (113)
439 PRK07709 fructose-bisphosphate 24.6 1.3E+02 0.0029 25.3 4.4 66 45-114 166-232 (285)
440 COG0703 AroK Shikimate kinase 24.5 1.3E+02 0.0029 23.4 4.0 101 83-191 3-111 (172)
441 PRK14046 malate--CoA ligase su 24.5 4.9E+02 0.011 22.9 11.7 97 100-197 274-386 (392)
442 PRK10116 universal stress prot 24.4 2.6E+02 0.0057 19.8 6.4 41 98-138 69-111 (142)
443 PRK14189 bifunctional 5,10-met 24.4 4.4E+02 0.0095 22.3 7.6 86 66-156 138-227 (285)
444 PRK10481 hypothetical protein; 24.4 3.9E+02 0.0085 21.7 9.2 102 52-159 92-213 (224)
445 PF00205 TPP_enzyme_M: Thiamin 24.3 2.4E+02 0.0052 20.3 5.3 64 71-135 2-83 (137)
446 cd05125 Mth938_2P1-like Mth938 24.3 1.9E+02 0.0042 20.8 4.6 40 69-108 41-83 (114)
447 KOG0369|consensus 24.3 1.8E+02 0.0039 28.1 5.4 83 96-180 96-188 (1176)
448 COG0669 CoaD Phosphopantethein 24.2 3.4E+02 0.0073 20.9 6.5 63 52-123 30-96 (159)
449 PRK14334 (dimethylallyl)adenos 24.0 3E+02 0.0065 24.5 6.8 51 67-119 272-328 (440)
450 PF00290 Trp_syntA: Tryptophan 24.0 1.2E+02 0.0026 25.3 3.9 66 95-162 129-208 (259)
451 TIGR01319 glmL_fam conserved h 23.9 2.4E+02 0.0053 25.6 6.1 60 73-133 113-176 (463)
452 TIGR00089 RNA modification enz 23.8 3.1E+02 0.0066 24.2 6.8 51 67-119 274-330 (429)
453 PRK07877 hypothetical protein; 23.7 2.4E+02 0.0051 27.3 6.3 62 98-159 165-228 (722)
454 PF05014 Nuc_deoxyrib_tr: Nucl 23.7 61 0.0013 22.8 1.9 35 125-159 57-96 (113)
455 PRK15122 magnesium-transportin 23.7 7.3E+02 0.016 24.6 9.8 102 55-162 541-646 (903)
456 PF06345 Drf_DAD: DRF Autoregu 23.5 65 0.0014 14.4 1.2 10 144-153 5-14 (15)
457 COG0416 PlsX Fatty acid/phosph 23.5 2.7E+02 0.0059 24.2 6.0 36 66-105 15-50 (338)
458 PRK06444 prephenate dehydrogen 23.4 1.9E+02 0.0042 22.9 4.9 25 84-108 2-26 (197)
459 PRK05752 uroporphyrinogen-III 23.4 4E+02 0.0087 21.5 10.0 107 81-195 129-250 (255)
460 PF13167 GTP-bdg_N: GTP-bindin 23.1 2E+02 0.0043 20.1 4.3 40 81-125 35-74 (95)
461 TIGR01650 PD_CobS cobaltochela 23.1 4.5E+02 0.0097 22.7 7.4 83 41-125 16-108 (327)
462 TIGR02637 RhaS rhamnose ABC tr 23.1 4.1E+02 0.0089 21.5 7.9 11 143-153 222-232 (302)
463 PRK00286 xseA exodeoxyribonucl 23.1 2.2E+02 0.0047 25.3 5.7 97 47-160 129-232 (438)
464 COG4230 Delta 1-pyrroline-5-ca 22.9 1.3E+02 0.0027 28.4 4.1 49 131-179 238-293 (769)
465 PRK06823 ornithine cyclodeamin 22.9 3.9E+02 0.0085 22.7 7.0 36 82-119 128-163 (315)
466 TIGR02014 BchZ chlorophyllide 22.8 5.8E+02 0.013 23.2 8.4 72 83-159 153-230 (468)
467 PRK08306 dipicolinate synthase 22.8 3.4E+02 0.0073 22.8 6.6 73 83-159 3-101 (296)
468 TIGR03215 ac_ald_DH_ac acetald 22.8 4.7E+02 0.01 22.0 8.8 71 80-158 23-94 (285)
469 PF02593 dTMP_synthase: Thymid 22.7 4.2E+02 0.0091 21.5 6.9 54 49-108 49-105 (217)
470 TIGR01142 purT phosphoribosylg 22.6 4E+02 0.0087 22.7 7.2 11 97-107 53-63 (380)
471 cd06217 FNR_iron_sulfur_bindin 22.6 1E+02 0.0022 24.3 3.2 20 69-88 152-171 (235)
472 PLN00135 malate dehydrogenase 22.5 4.9E+02 0.011 22.2 7.9 64 52-118 59-135 (309)
473 TIGR00670 asp_carb_tr aspartat 22.4 4.8E+02 0.01 22.1 9.7 104 12-136 116-223 (301)
474 PRK08444 hypothetical protein; 22.3 4.1E+02 0.0089 23.1 7.1 52 36-87 82-133 (353)
475 PF12683 DUF3798: Protein of u 22.3 82 0.0018 26.5 2.6 89 64-156 45-134 (275)
476 cd07413 MPP_PA3087 Pseudomonas 22.3 3.4E+02 0.0073 21.6 6.2 9 82-90 34-42 (222)
477 COG0194 Gmk Guanylate kinase [ 22.3 2.2E+02 0.0047 22.7 4.9 62 70-135 102-165 (191)
478 TIGR01011 rpsB_bact ribosomal 22.3 1.1E+02 0.0023 24.9 3.3 31 129-159 155-185 (225)
479 PRK03369 murD UDP-N-acetylmura 22.3 5.1E+02 0.011 23.4 8.0 31 127-157 68-99 (488)
480 PF02570 CbiC: Precorrin-8X me 22.2 4.1E+02 0.0089 21.2 8.1 82 69-172 107-190 (198)
481 cd06215 FNR_iron_sulfur_bindin 22.2 99 0.0021 24.3 3.1 20 69-88 148-167 (231)
482 TIGR02992 ectoine_eutC ectoine 22.2 2.5E+02 0.0053 23.9 5.7 72 83-156 130-221 (326)
483 TIGR02803 ExbD_1 TonB system t 22.1 3E+02 0.0065 19.6 6.7 47 67-115 70-119 (122)
484 PRK01254 hypothetical protein; 22.0 3.1E+02 0.0067 26.4 6.5 53 67-119 540-599 (707)
485 KOG1467|consensus 22.0 1.9E+02 0.0041 26.5 5.0 85 77-168 380-478 (556)
486 TIGR00262 trpA tryptophan synt 22.0 3.2E+02 0.007 22.5 6.1 64 96-161 130-207 (256)
487 COG0299 PurN Folate-dependent 22.0 3.1E+02 0.0068 22.0 5.7 58 96-155 69-131 (200)
488 PRK14192 bifunctional 5,10-met 21.9 3E+02 0.0064 23.1 6.0 83 67-155 140-227 (283)
489 PF00318 Ribosomal_S2: Ribosom 21.9 1.1E+02 0.0025 24.4 3.3 30 130-159 144-173 (211)
490 TIGR00715 precor6x_red precorr 21.9 4.6E+02 0.0099 21.6 11.1 84 101-196 166-255 (256)
491 PRK00258 aroE shikimate 5-dehy 21.9 2.4E+02 0.0051 23.3 5.4 56 81-139 122-195 (278)
492 TIGR01081 mpl UDP-N-acetylmura 21.8 4E+02 0.0086 23.6 7.2 79 69-158 11-90 (448)
493 cd01977 Nitrogenase_VFe_alpha 21.8 4.4E+02 0.0096 23.2 7.4 74 83-159 163-240 (415)
494 COG2949 SanA Uncharacterized m 21.8 4.5E+02 0.0097 21.5 10.0 93 67-160 79-181 (235)
495 PRK07232 bifunctional malic en 21.6 3.9E+02 0.0084 26.0 7.2 86 69-157 172-281 (752)
496 PRK05928 hemD uroporphyrinogen 21.5 4E+02 0.0087 20.8 9.3 106 81-194 124-246 (249)
497 PRK14027 quinate/shikimate deh 21.5 3.8E+02 0.0083 22.4 6.6 33 82-117 127-159 (283)
498 CHL00076 chlB photochlorophyll 21.5 2.7E+02 0.0059 25.5 6.1 72 83-157 164-243 (513)
499 cd06319 PBP1_ABC_sugar_binding 21.5 4.1E+02 0.0089 20.9 7.7 18 100-118 202-219 (277)
500 cd06185 PDR_like Phthalate dio 21.3 1.4E+02 0.003 23.1 3.7 8 110-117 177-184 (211)
No 1
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=4.9e-44 Score=313.91 Aligned_cols=200 Identities=66% Similarity=1.034 Sum_probs=165.2
Q ss_pred CcccceeeEeeeCeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHC
Q psy15362 1 MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAV 80 (200)
Q Consensus 1 ~~~~~~~~~~~~gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~ 80 (200)
||.+||+|+.++|++|.||..+.+..++++++|++|+......|++||||+|+++|+|+++..|..+.++++|.+|+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~v 312 (468)
T PF13844_consen 233 MIASGQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAV 312 (468)
T ss_dssp HHHHT-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHS
T ss_pred HHHcCCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCC
Q psy15362 81 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 160 (200)
Q Consensus 81 p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g 160 (200)
|+++|++...+...++.+++.++++|++++|++|.+..+.+++...|+.+||+|||+||+|+++.+|||++|+||||..|
T Consensus 313 P~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 313 PNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp TTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---
T ss_pred CCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 99999998754345678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHhhcCCCcceecCHHHHHHHHHHhhcCCC
Q psy15362 161 ETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 161 ~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d~e 200 (200)
+.+++|+++++++.+|++|||+.|+++|+++|++|++|++
T Consensus 393 ~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~ 432 (468)
T PF13844_consen 393 ETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPE 432 (468)
T ss_dssp SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HH
T ss_pred CCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999864
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=234.06 Aligned_cols=158 Identities=43% Similarity=0.704 Sum_probs=150.2
Q ss_pred hhhhhhcCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCccc---HHHHHHHHHHcCCCCCcEEEecc
Q psy15362 41 ITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVG---EANIQATAQALGLDQHRILFSNV 117 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~---~~~l~~~~~~~gl~~~rv~f~g~ 117 (200)
...|.++|||+|.++|+|+++..|.++++++.|.+|++..||.+|++.+++ +. ...++.++++.|++.+|++|++.
T Consensus 418 ~~sR~~lglp~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~~~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 418 PPSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred CcchhhcCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-CcHHHHHHHHHHHHHcCCChhheeecCC
Confidence 357899999999999999999999999999999999999999999999863 32 36789999999999999999999
Q ss_pred CCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCHHHHHHHHHHhhc
Q psy15362 118 AAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 197 (200)
Q Consensus 118 ~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~ 197 (200)
.|++++.+.|..||++|||+||+|++|.+||++||+||||..|+.+++|.+++++...|++|+|++++++|+++|++++.
T Consensus 497 ~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~ 576 (620)
T COG3914 497 APNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGS 576 (620)
T ss_pred CCCHHHHHhhchhheeeecccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy15362 198 DR 199 (200)
Q Consensus 198 d~ 199 (200)
|.
T Consensus 577 dr 578 (620)
T COG3914 577 DR 578 (620)
T ss_pred cH
Confidence 75
No 3
>KOG4626|consensus
Probab=99.95 E-value=1.2e-27 Score=211.93 Aligned_cols=190 Identities=63% Similarity=1.052 Sum_probs=169.1
Q ss_pred eeCeeecccccccccCCCCC----CCCC---CCc----------------hhhhhhhhhcCCCCCCEEEEEeCCCCCCCH
Q psy15362 11 VNGIVLQNGLATNQTNTKTA----TGEE---VPQ----------------SIVITSRQQYGLPEDAIVYCNFNQLYKIDP 67 (200)
Q Consensus 11 ~~gi~i~ng~~~~~~~~~~~----~~~~---~~~----------------~~~~~~R~~l~l~~~~~v~~~~~r~~K~~~ 67 (200)
.+|-++.+.+-||.+.++.. +.|+ +|+ +--...|.+++||+|+++|+++..+.|..|
T Consensus 694 TtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FNqLyKidP 773 (966)
T KOG4626|consen 694 TTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFNQLYKIDP 773 (966)
T ss_pred CCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeechhhhcCCH
Confidence 36677889999998866632 1121 111 112358899999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHH
Q psy15362 68 STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMD 147 (200)
Q Consensus 68 ~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lE 147 (200)
..++.|.+|++++||.+||+...+...+++++..+.++|++++||+|+.-...+|+.+.++.+||.|||+++.|.+|-+|
T Consensus 774 ~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhTTg~d 853 (966)
T KOG4626|consen 774 STLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHTTGMD 853 (966)
T ss_pred HHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCcccchh
Confidence 99999999999999999999987555678999999999999999999999988999999999999999999999999999
Q ss_pred HHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCHHHHHHHHHHhhcCCC
Q psy15362 148 VLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 148 Ama~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d~e 200 (200)
.+|+|+|+||++|+.+++|++.+.+...|++++|+.+.++|++++++|+.|.+
T Consensus 854 vLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~ 906 (966)
T KOG4626|consen 854 VLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKE 906 (966)
T ss_pred hhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHH
Confidence 99999999999999999999999999999999999999999999999999864
No 4
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.89 E-value=3.2e-22 Score=174.05 Aligned_cols=172 Identities=17% Similarity=0.143 Sum_probs=126.1
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCC-C--CCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ-L--YKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r-~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
.+|+||+|++.|.+.+.. ....+....++++..++++++| . .|+++.+++++.++.++.|+++|+++|+
T Consensus 180 ~vI~ngvd~~~f~~~~~~--------~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~ 251 (396)
T cd03818 180 SVIHDGIDTDRLRPDPQA--------RLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGG 251 (396)
T ss_pred EEeCCCccccccCCCchh--------hhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 468999999987643211 1223334456677778888887 4 6999999999999999999999999996
Q ss_pred Ccc--------cHHHHHHHHHHcCC--CCCcEEEeccCCHHHHHhhcccccEEEeCCCCC-CchHHHHHHHcCCCeeecC
Q psy15362 91 PAV--------GEANIQATAQALGL--DQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 91 ~~~--------~~~~l~~~~~~~gl--~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~-~g~~~lEAma~G~PVV~~~ 159 (200)
+++ ..+..++++++++. ..++|+|+|++|++++..+|+.||+++.|+..+ .|++++||||||+|||+++
T Consensus 252 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~ 331 (396)
T cd03818 252 DGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD 331 (396)
T ss_pred CCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC
Confidence 321 11123344555443 128999999999999999999999999988654 5899999999999999986
Q ss_pred CCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 160 GETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 160 g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
.....+- +. .|..+++. .|.+++++...++++|+
T Consensus 332 ~~g~~e~-----i~-~~~~G~lv~~~d~~~la~~i~~ll~~~ 367 (396)
T cd03818 332 TAPVREV-----IT-DGENGLLVDFFDPDALAAAVIELLDDP 367 (396)
T ss_pred CCCchhh-----cc-cCCceEEcCCCCHHHHHHHHHHHHhCH
Confidence 5433221 11 24445554 58899999999988876
No 5
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.89 E-value=3.9e-22 Score=173.39 Aligned_cols=169 Identities=23% Similarity=0.238 Sum_probs=134.2
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCC--cEEEEEc
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN--SILWLLK 89 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~--~~l~ivG 89 (200)
.+|+||+|.+.|.+. .+...|.+++++++..+++++||. .|+++.+++++.++.++.|+ .+|+++|
T Consensus 190 ~vi~ngvd~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG 259 (405)
T TIGR03449 190 DVVAPGADLERFRPG----------DRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVG 259 (405)
T ss_pred EEECCCcCHHHcCCC----------cHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEe
Confidence 368999999877422 123567889998888888899986 58999999999999988887 9999999
Q ss_pred CC---c-ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcch
Q psy15362 90 FP---A-VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLA 164 (200)
Q Consensus 90 ~~---~-~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~ 164 (200)
++ + +..+.++++++++++. ++|+|+|+++.+++..+|+.||+++.|+..++ |++++|||+||+|||+++.....
T Consensus 260 ~~~~~g~~~~~~l~~~~~~~~l~-~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~ 338 (405)
T TIGR03449 260 GPSGSGLATPDALIELAAELGIA-DRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLP 338 (405)
T ss_pred CCCCCcchHHHHHHHHHHHcCCC-ceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcH
Confidence 52 2 3356789999999998 99999999999999999999999999987665 99999999999999997643222
Q ss_pred hhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 165 SRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 165 ~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
+ ++. .|-..++. .|.+++.+...++.+|+
T Consensus 339 e-----~i~-~~~~g~~~~~~d~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 339 V-----AVA-DGETGLLVDGHDPADWADALARLLDDP 369 (405)
T ss_pred h-----hhc-cCCceEECCCCCHHHHHHHHHHHHhCH
Confidence 1 121 23334444 48889998888888765
No 6
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.89 E-value=3.6e-22 Score=175.15 Aligned_cols=161 Identities=12% Similarity=0.106 Sum_probs=127.1
Q ss_pred eecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCCc
Q psy15362 15 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPA 92 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~ 92 (200)
+|+||+|++.|.+.+. . .+.+.+.++++||+ .|+++.++++++++.++.|+.+++++|+ +
T Consensus 201 vi~nGvd~~~f~~~~~--------------~---~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-G 262 (406)
T PRK15427 201 VSRMGVDMTRFSPRPV--------------K---APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGI-G 262 (406)
T ss_pred EcCCCCCHHHcCCCcc--------------c---cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEEC-c
Confidence 5899999987743210 0 12344667788885 6999999999999988899999999997 4
Q ss_pred ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCC------C-CchHHHHHHHcCCCeeecCCCcchh
Q psy15362 93 VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC------N-GHTTSMDVLWTGTPVVTLPGETLAS 165 (200)
Q Consensus 93 ~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~------~-~g~~~lEAma~G~PVV~~~g~~~~~ 165 (200)
+.++.++++++++|++ ++|+|+|+++.+++..+|+.||+|+.||.. + .|++++||||||+|||+++.....+
T Consensus 263 ~~~~~l~~~~~~~~l~-~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E 341 (406)
T PRK15427 263 PWERRLRTLIEQYQLE-DVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPE 341 (406)
T ss_pred hhHHHHHHHHHHcCCC-CeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchh
Confidence 6778899999999998 999999999999999999999999999852 4 4899999999999999976433222
Q ss_pred hhHHHHHhhcCCCccee--cCHHHHHHHHHHhhc-CCC
Q psy15362 166 RVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRD 200 (200)
Q Consensus 166 r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~-d~e 200 (200)
++ ..|..+++. .|.+++++...++++ |++
T Consensus 342 -----~v-~~~~~G~lv~~~d~~~la~ai~~l~~~d~~ 373 (406)
T PRK15427 342 -----LV-EADKSGWLVPENDAQALAQRLAAFSQLDTD 373 (406)
T ss_pred -----hh-cCCCceEEeCCCCHHHHHHHHHHHHhCCHH
Confidence 11 124445554 588999999999888 763
No 7
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.88 E-value=8.9e-22 Score=169.73 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=130.0
Q ss_pred eecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCCc
Q psy15362 15 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPA 92 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~ 92 (200)
+||||+|........ +....+...|++++++++..+++++||+ .|+++.+++++..+.++.|+++|+++|++.
T Consensus 157 vipngvd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~ 231 (372)
T cd03792 157 IIPPSIDPLSGKNRE-----LSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGA 231 (372)
T ss_pred EeCCCCCCCccccCC-----CCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCC
Confidence 799999965321111 1112335678889999998899999986 699999999999998888999999999753
Q ss_pred cc----HHHHHHHHHHcCCCCCcEEEeccC--CHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchh
Q psy15362 93 VG----EANIQATAQALGLDQHRILFSNVA--AKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLAS 165 (200)
Q Consensus 93 ~~----~~~l~~~~~~~gl~~~rv~f~g~~--~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~ 165 (200)
.. .+.++++.+..++. ++|.|+|.. +.+++..+|+.||+|+.||.+++ |++++||||||+|||+++......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~ 310 (372)
T cd03792 232 TDDPEGWIVYEEVLEYAEGD-PDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIPL 310 (372)
T ss_pred CCCchhHHHHHHHHHHhCCC-CCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCchh
Confidence 21 22356666667887 899999987 78899999999999999997766 999999999999999976443222
Q ss_pred hhHHHHHhhcCCCcceecCHHHHHHHHHHhhcCC
Q psy15362 166 RVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 166 r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d~ 199 (200)
++ ..|..+++.++.+++...+.++.+|+
T Consensus 311 -----~i-~~~~~g~~~~~~~~~a~~i~~ll~~~ 338 (372)
T cd03792 311 -----QI-EDGETGFLVDTVEEAAVRILYLLRDP 338 (372)
T ss_pred -----hc-ccCCceEEeCCcHHHHHHHHHHHcCH
Confidence 11 22455566777777777777777664
No 8
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.88 E-value=8.3e-22 Score=171.28 Aligned_cols=168 Identities=16% Similarity=0.162 Sum_probs=127.9
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+||||+|++.|.+. .....|++++++++..+++++||+ .|+++.+++++.++.++.|+.+|+++|++
T Consensus 164 ~vIpngvd~~~~~~~----------~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g 233 (380)
T PRK15484 164 SIVPNGFCLETYQSN----------PQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDP 233 (380)
T ss_pred EEecCCCCHHHcCCc----------chHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 468999998876422 123567789998888888888885 69999999999999999999999999964
Q ss_pred cc----cH----HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCC-CC-chHHHHHHHcCCCeeecCCC
Q psy15362 92 AV----GE----ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NG-HTTSMDVLWTGTPVVTLPGE 161 (200)
Q Consensus 92 ~~----~~----~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~-~~-g~~~lEAma~G~PVV~~~g~ 161 (200)
.. .. +.+++++++++ ++|+|+|+++.+++..+|+.||+++.||.+ ++ |++++||||||+|||+++..
T Consensus 234 ~~~~~~~~~~~~~~l~~~~~~l~---~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g 310 (380)
T PRK15484 234 TASSKGEKAAYQKKVLEAAKRIG---DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG 310 (380)
T ss_pred ccccccchhHHHHHHHHHHHhcC---CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCC
Confidence 21 11 24555555543 679999999999999999999999999864 54 89999999999999997643
Q ss_pred cchhhhHHHHHhhcCCCcc-e--ecCHHHHHHHHHHhhcCCC
Q psy15362 162 TLASRVAASQLATLGCPEL-I--ARTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 162 ~~~~r~~~~~~~~~g~~~~-i--a~~~~~yv~~a~~l~~d~e 200 (200)
.+.+ ++. .|..++ + ..|.+++.+.+.++++|++
T Consensus 311 g~~E-----iv~-~~~~G~~l~~~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 311 GITE-----FVL-EGITGYHLAEPMTSDSIISDINRTLADPE 346 (380)
T ss_pred CcHh-----hcc-cCCceEEEeCCCCHHHHHHHHHHHHcCHH
Confidence 3222 111 244444 3 2588999999988888763
No 9
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.88 E-value=6.2e-22 Score=167.86 Aligned_cols=168 Identities=21% Similarity=0.277 Sum_probs=132.5
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+|+||+|.+.|..... . ...+.+++.+.+.++++++||. .|+++.+++++..+.++.|+.+++++|+
T Consensus 162 ~vi~ngvd~~~~~~~~~--------~-~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~- 231 (358)
T cd03812 162 KVIPNGIDLEKFIFNEE--------I-RKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGD- 231 (358)
T ss_pred EEEeccCcHHHcCCCch--------h-hhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeC-
Confidence 46899999887643211 1 1125667788888888899885 6999999999999999999999999997
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHH
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAAS 170 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~ 170 (200)
++..+.+++.++++++. ++|+|+|+. +++..+|+.||+++.||.+++ |++++||||||+|||+++.....+
T Consensus 232 g~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~----- 303 (358)
T cd03812 232 GELEEEIKKKVKELGLE-DKVIFLGVR--NDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEV----- 303 (358)
T ss_pred CchHHHHHHHHHhcCCC-CcEEEeccc--CCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhh-----
Confidence 46678899999999997 999999993 678889999999999998765 999999999999999986443322
Q ss_pred HHhhcCCCccee-cCHHHHHHHHHHhhcCCC
Q psy15362 171 QLATLGCPELIA-RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 171 ~~~~~g~~~~ia-~~~~~yv~~a~~l~~d~e 200 (200)
++.. +..-+.. ++.+++.+...++.+||+
T Consensus 304 ~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 304 DLTD-LVKFLSLDESPEIWAEEILKLKSEDR 333 (358)
T ss_pred hhcc-CccEEeCCCCHHHHHHHHHHHHhCcc
Confidence 2222 2233444 456999999999999885
No 10
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.88 E-value=2.6e-22 Score=179.73 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=110.9
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhh--hcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEc
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQ--QYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLK 89 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~--~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG 89 (200)
.+|+||+|++.|.+.... + ...|. ..+++++.+++++++|. .|++..+++++.++++..|+.+|+++|
T Consensus 365 ~VIyNGVD~~rf~p~~~~----~----~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVG 436 (578)
T PRK15490 365 QVVYNGVLPPSTEPSSEV----P----HKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVG 436 (578)
T ss_pred EEEeCCcchhhcCccchh----h----HHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEe
Confidence 368999999877543210 1 12232 24556667788888885 699999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCC
Q psy15362 90 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPG 160 (200)
Q Consensus 90 ~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g 160 (200)
+ ++.++.++++++++|+. ++|+|+|+. +++..+|+.+|+|+.||.+++ |++++|||+||+|||+++-
T Consensus 437 d-G~~~eeLk~la~elgL~-d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdv 504 (578)
T PRK15490 437 D-GDLRAEAQKRAEQLGIL-ERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPA 504 (578)
T ss_pred C-chhHHHHHHHHHHcCCC-CcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCC
Confidence 7 46778999999999998 999999996 578889999999999998876 9999999999999999753
No 11
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.88 E-value=1.5e-21 Score=170.14 Aligned_cols=160 Identities=13% Similarity=0.043 Sum_probs=126.3
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+|+||+|++.|.+... . .+++.++++++||. .|+.+.+++++..+.++.|+.+|+++|++
T Consensus 171 ~vi~ngvd~~~f~~~~~-----------~------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g 233 (398)
T cd03796 171 SVIPNAVDSSDFTPDPS-----------K------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDG 233 (398)
T ss_pred EEEcCccCHHHcCCCcc-----------c------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCC
Confidence 46899999887743210 0 23567788888885 69999999999999888999999999974
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHH
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAAS 170 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~ 170 (200)
+..+.++++++++++. ++|+|+|+++.+++..+|+.||+++.||..++ |++++||||||+|||+++.....+
T Consensus 234 -~~~~~l~~~~~~~~l~-~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e----- 306 (398)
T cd03796 234 -PKRILLEEMREKYNLQ-DRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPE----- 306 (398)
T ss_pred -chHHHHHHHHHHhCCC-CeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCchh-----
Confidence 6678899999999998 99999999999999999999999999987665 999999999999999976443322
Q ss_pred HHhhcCCCcceecCHHHHHHHHHHhhcC
Q psy15362 171 QLATLGCPELIARTHKEYQDIAIRLGTD 198 (200)
Q Consensus 171 ~~~~~g~~~~ia~~~~~yv~~a~~l~~d 198 (200)
++.. +-.-+...|.+++.+...+++++
T Consensus 307 ~i~~-~~~~~~~~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 307 VLPP-DMILLAEPDVESIVRKLEEAISI 333 (398)
T ss_pred heeC-CceeecCCCHHHHHHHHHHHHhC
Confidence 1111 11123445778888888777664
No 12
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.87 E-value=2.4e-21 Score=166.67 Aligned_cols=168 Identities=14% Similarity=0.174 Sum_probs=128.1
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCC----CcEEEE
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVP----NSILWL 87 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p----~~~l~i 87 (200)
.+|+||+|++.|.+.... +...++....+++.++++++||. .|+++.+++++.++.++.| +.+|++
T Consensus 163 ~vi~ngvd~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i 234 (374)
T TIGR03088 163 HQIYNGVDTERFHPSRGD--------RSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVI 234 (374)
T ss_pred EEeccCccccccCCCccc--------hhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEE
Confidence 468999999877533211 12223344456778889999986 5999999999999988876 689999
Q ss_pred EcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhh
Q psy15362 88 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASR 166 (200)
Q Consensus 88 vG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r 166 (200)
+|+ ++..+.+++.++++++. ++++|+|.. +++..+|+.||+++.||.+++ |++++|||+||+|||+++-....+
T Consensus 235 ~G~-g~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e- 309 (374)
T TIGR03088 235 VGD-GPARGACEQMVRAAGLA-HLVWLPGER--DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNPE- 309 (374)
T ss_pred ecC-CchHHHHHHHHHHcCCc-ceEEEcCCc--CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcHH-
Confidence 997 46678899999999997 999999975 578889999999999987665 999999999999999975432221
Q ss_pred hHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 167 VAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 167 ~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
++. .|..+++. +|.+++++....+.+|+
T Consensus 310 ----~i~-~~~~g~~~~~~d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 310 ----LVQ-HGVTGALVPPGDAVALARALQPYVSDP 339 (374)
T ss_pred ----Hhc-CCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 221 13334443 57889999888887765
No 13
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.87 E-value=4.7e-21 Score=165.30 Aligned_cols=169 Identities=15% Similarity=0.163 Sum_probs=130.9
Q ss_pred eecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHC---CCcEEEEEc
Q psy15362 15 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAV---PNSILWLLK 89 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~---p~~~l~ivG 89 (200)
+|+||+|++.|.+... ...++....+++.++++++||. .|+++.+++++.++.++. |+.+|+++|
T Consensus 183 vi~n~vd~~~~~~~~~----------~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G 252 (392)
T cd03805 183 VVYPCVDTDSFESTSE----------DPDPGLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAG 252 (392)
T ss_pred eeCCCcCHHHcCcccc----------cccccccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEc
Confidence 7899999887643210 1123345566777888888885 689999999999998887 899999999
Q ss_pred CCccc-------HHHHHHHHHH-cCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCC
Q psy15362 90 FPAVG-------EANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPG 160 (200)
Q Consensus 90 ~~~~~-------~~~l~~~~~~-~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g 160 (200)
++... .+.+++++++ ++++ ++|+|+|+++.+++..+|+.||+++.|+..++ |++++|||+||+|||+++.
T Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~~~l~-~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~ 331 (392)
T cd03805 253 GYDPRVAENVEYLEELQRLAEELLLLE-DQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNS 331 (392)
T ss_pred CCCCCCchhHHHHHHHHHHHHHhcCCC-ceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECC
Confidence 74221 2678889999 9998 99999999999999999999999999887765 9999999999999999865
Q ss_pred CcchhhhHHHHHhhcCCCc-ceecCHHHHHHHHHHhhcCCC
Q psy15362 161 ETLASRVAASQLATLGCPE-LIARTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 161 ~~~~~r~~~~~~~~~g~~~-~ia~~~~~yv~~a~~l~~d~e 200 (200)
....+.+. . +..+ ++..|++++++...++.+|++
T Consensus 332 ~~~~e~i~-----~-~~~g~~~~~~~~~~a~~i~~l~~~~~ 366 (392)
T cd03805 332 GGPLETVV-----D-GETGFLCEPTPEEFAEAMLKLANDPD 366 (392)
T ss_pred CCcHHHhc-----c-CCceEEeCCCHHHHHHHHHHHHhChH
Confidence 43332222 1 2233 344688899988888888763
No 14
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.87 E-value=4.8e-21 Score=167.39 Aligned_cols=169 Identities=15% Similarity=0.144 Sum_probs=130.2
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+|+||+|++.|.+.. ...+...|++++++++.++++++|+. .|+++.+++++.++ ++.|+++|+++|+
T Consensus 197 ~vi~ngvd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~- 267 (412)
T PRK10307 197 IFFPNWSEVARFQPVA-------DADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQ- 267 (412)
T ss_pred EEECCCcCHhhcCCCC-------ccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECC-
Confidence 3589999998775321 11134578889999988888889985 68999999999876 4568999999997
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-----chHHHHHHHcCCCeeecCCCcchhh
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-----HTTSMDVLWTGTPVVTLPGETLASR 166 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-----g~~~lEAma~G~PVV~~~g~~~~~r 166 (200)
++.++.++++++++++ ++|+|+|+++.+++..+|+.||+++.|+..++ ++.++|||+||+|||+++.... .
T Consensus 268 g~~~~~l~~~~~~~~l--~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~ 343 (412)
T PRK10307 268 GGGKARLEKMAQCRGL--PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--E 343 (412)
T ss_pred ChhHHHHHHHHHHcCC--CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--h
Confidence 4677889999999998 46999999999999999999999999886553 4568999999999999742210 0
Q ss_pred hHHHHHhhcCCCcce-e-cCHHHHHHHHHHhhcCC
Q psy15362 167 VAASQLATLGCPELI-A-RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 167 ~~~~~~~~~g~~~~i-a-~~~~~yv~~a~~l~~d~ 199 (200)
. ..++. + .+++ . .|.+++.+...++++|+
T Consensus 344 ~-~~~i~--~-~G~~~~~~d~~~la~~i~~l~~~~ 374 (412)
T PRK10307 344 L-GQLVE--G-IGVCVEPESVEALVAAIAALARQA 374 (412)
T ss_pred H-HHHHh--C-CcEEeCCCCHHHHHHHHHHHHhCH
Confidence 0 11222 2 3343 3 68899999998888776
No 15
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.87 E-value=2.4e-21 Score=179.06 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=109.5
Q ss_pred eecccccccccCCCCCCCCCCCchhhhhhhh--hcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 15 VLQNGLATNQTNTKTATGEEVPQSIVITSRQ--QYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~--~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
+|+||+|++.|.+++ .. ...+. ...++.+.+++++++|+ .|+++.+++++++++++.|+.+|+|+|+
T Consensus 486 VI~NGVd~~~f~~~~-------~~--~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~ 556 (694)
T PRK15179 486 VVYNGLAPLKSVQDD-------AC--TAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGG 556 (694)
T ss_pred EECCCcCHHhcCCCc-------hh--hHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEcc
Confidence 689999988764321 01 11111 12345667788888885 6999999999999999999999999997
Q ss_pred CcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCC
Q psy15362 91 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGE 161 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~ 161 (200)
++.++.++++++++|+. ++|+|+|+++ ++..+|+.+|+|+.||.+++ |++++|||+||+|||+++..
T Consensus 557 -G~~~~~L~~l~~~lgL~-~~V~flG~~~--dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~g 624 (694)
T PRK15179 557 -GPLLESVREFAQRLGMG-ERILFTGLSR--RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG 624 (694)
T ss_pred -CcchHHHHHHHHHcCCC-CcEEEcCCcc--hHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCC
Confidence 46788999999999998 9999999984 78889999999999998776 99999999999999997643
No 16
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.87 E-value=6.4e-21 Score=160.01 Aligned_cols=169 Identities=18% Similarity=0.164 Sum_probs=132.3
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.++|||+|.+.|.+.. .... |+.++.+.+.++++++||. .|+++.+++++.++.++.|+.+++++|.+
T Consensus 174 ~vi~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~ 243 (375)
T cd03821 174 AVIPNGVDIPPFAALP---------SRGR-RRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPD 243 (375)
T ss_pred EEcCCCcChhccCcch---------hhhh-hhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCC
Confidence 5689999988764321 1112 7778888888888888875 69999999999999998999999999964
Q ss_pred cc-cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHH
Q psy15362 92 AV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAA 169 (200)
Q Consensus 92 ~~-~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~ 169 (200)
.. ....++.+++++++. ++|+|+|+++.+++..+|+.||+++.|+.+++ |++++|||+||+|||+++.....+
T Consensus 244 ~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~---- 318 (375)
T cd03821 244 EGGYRAELKQIAAALGLE-DRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQE---- 318 (375)
T ss_pred CcchHHHHHHHHHhcCcc-ceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHH----
Confidence 32 234566667888997 99999999999999999999999999997665 999999999999999987554322
Q ss_pred HHHhhcCCCcceecCHHHHHHHHHHhhcCC
Q psy15362 170 SQLATLGCPELIARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 170 ~~~~~~g~~~~ia~~~~~yv~~a~~l~~d~ 199 (200)
++.. +..-++..+.+++++.+.++.+|+
T Consensus 319 -~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 319 -LIEY-GCGWVVDDDVDALAAALRRALELP 346 (375)
T ss_pred -Hhhc-CceEEeCCChHHHHHHHHHHHhCH
Confidence 2222 222344566689999998888875
No 17
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.86 E-value=6.3e-21 Score=168.63 Aligned_cols=174 Identities=10% Similarity=0.059 Sum_probs=120.7
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHH--HHCCCcEEEEEc
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVL--KAVPNSILWLLK 89 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~--~~~p~~~l~ivG 89 (200)
.+||||+|++.|.+..... ........+.+++.+++..+++++||+ .|+++.+++|++++. +..++.. +++|
T Consensus 212 ~vIpnGvd~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~-li~G 287 (439)
T TIGR02472 212 QVIPPGVDLSRFYPPQSSE---ETSEIDNLLAPFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV-LVLG 287 (439)
T ss_pred EEECCCcChhhcCCCCccc---cchhHHHHHHhhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE-EEeC
Confidence 3689999999886432111 000111223345667777788888885 699999999998642 2234433 3556
Q ss_pred CCcccH-----------HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccc----cEEEeCCCCCC-chHHHHHHHcCC
Q psy15362 90 FPAVGE-----------ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----DVCLDTPLCNG-HTTSMDVLWTGT 153 (200)
Q Consensus 90 ~~~~~~-----------~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~a----Dv~l~~~~~~~-g~~~lEAma~G~ 153 (200)
++ +.. +.++++++++++. ++|+|+|+++.+++..+|+.| |+|+.||.+|+ |++++||||||+
T Consensus 288 ~g-~~~~~l~~~~~~~~~~~~~~~~~~~l~-~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~ 365 (439)
T TIGR02472 288 CR-DDIRKMESQQREVLQKVLLLIDRYDLY-GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL 365 (439)
T ss_pred Cc-cccccccHHHHHHHHHHHHHHHHcCCC-ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC
Confidence 53 321 2345678889998 999999999999999999877 99999998765 999999999999
Q ss_pred CeeecCCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 154 PVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 154 PVV~~~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
|||+++.....+ ++ ..|..+++. .|.+++.+...++++|+
T Consensus 366 PvV~s~~gg~~e-----iv-~~~~~G~lv~~~d~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 366 PIVATDDGGPRD-----II-ANCRNGLLVDVLDLEAIASALEDALSDS 407 (439)
T ss_pred CEEEeCCCCcHH-----Hh-cCCCcEEEeCCCCHHHHHHHHHHHHhCH
Confidence 999986443222 11 123445553 68889998888888775
No 18
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.86 E-value=7.7e-21 Score=172.87 Aligned_cols=164 Identities=11% Similarity=0.017 Sum_probs=122.6
Q ss_pred CeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCC--CCCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 13 GIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r--~~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
++...||||++.|.+.. . ...+.+++++.....++++|| ..|+++.+++++..+.++.|+.+|+|+|+
T Consensus 516 vI~nVnGVDte~F~P~~---------r-~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGD 585 (794)
T PLN02501 516 VICNVHGVNPKFLKIGE---------K-VAEERELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGN 585 (794)
T ss_pred ceeecccccccccCCcc---------h-hHHHHhcCCccccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcC
Confidence 44444799999876431 1 122345777543322345566 47999999999999988899999999997
Q ss_pred CcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHH
Q psy15362 91 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAA 169 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~ 169 (200)
|+.++.++++++++++. |.|+|..+. ...+|+.+|+|+.||.+++ |++++||||||+|||+++....
T Consensus 586 -GP~reeLe~la~eLgL~---V~FLG~~dd--~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~------ 653 (794)
T PLN02501 586 -GEDAHEVQRAAKRLDLN---LNFLKGRDH--ADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSN------ 653 (794)
T ss_pred -CccHHHHHHHHHHcCCE---EEecCCCCC--HHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCC------
Confidence 47888999999998874 899999853 3457899999999998775 9999999999999999754321
Q ss_pred HHHhhcCCCcceecCHHHHHHHHHHhhcCC
Q psy15362 170 SQLATLGCPELIARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 170 ~~~~~~g~~~~ia~~~~~yv~~a~~l~~d~ 199 (200)
.++. .|...++..|.++|++.+.+++.|+
T Consensus 654 e~V~-~g~nGll~~D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 654 EFFR-SFPNCLTYKTSEDFVAKVKEALANE 682 (794)
T ss_pred ceEe-ecCCeEecCCHHHHHHHHHHHHhCc
Confidence 0111 1334456688999999999998876
No 19
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.85 E-value=1.8e-20 Score=166.14 Aligned_cols=161 Identities=16% Similarity=0.067 Sum_probs=120.8
Q ss_pred CeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCC--EEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEE
Q psy15362 13 GIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDA--IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLL 88 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~--~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~iv 88 (200)
++..++|+|+..|.+.. ...++.++ +.+. .+++++||+ .|+++.+++++.++.+..|+.+|+|+
T Consensus 198 ~i~~v~GVd~~~f~~~~-----------~~~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~iv 265 (462)
T PLN02846 198 IICNVHGVNPKFLEIGK-----------LKLEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLY 265 (462)
T ss_pred EEecCceechhhcCCCc-----------ccHhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEE
Confidence 44456899998775321 11233333 4443 356788885 69999999999999888899999999
Q ss_pred cCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhh
Q psy15362 89 KFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRV 167 (200)
Q Consensus 89 G~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~ 167 (200)
|+ |+.++.|+++++++++. .++ |.|+.+.++ +|+.+|+||.||.+|+ |++++||||||+|||+.+...
T Consensus 266 Gd-Gp~~~~L~~~a~~l~l~-~~v-f~G~~~~~~---~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----- 334 (462)
T PLN02846 266 GS-GEDSDEVKAAAEKLELD-VRV-YPGRDHADP---LFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----- 334 (462)
T ss_pred CC-CccHHHHHHHHHhcCCc-EEE-ECCCCCHHH---HHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC-----
Confidence 97 48889999999999986 665 899876553 6778899999998765 999999999999999975331
Q ss_pred HHHHHhhcCCCcceecCHHHHHHHHHHhhcC
Q psy15362 168 AASQLATLGCPELIARTHKEYQDIAIRLGTD 198 (200)
Q Consensus 168 ~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d 198 (200)
..++.. |-+.+..+|.++|++.+.+++.+
T Consensus 335 -~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 335 -NEFFKQ-FPNCRTYDDGKGFVRATLKALAE 363 (462)
T ss_pred -cceeec-CCceEecCCHHHHHHHHHHHHcc
Confidence 122222 44445668899999988888764
No 20
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.85 E-value=3.3e-20 Score=158.38 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=128.5
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+|+||+++..|.+.. ....|++++++++..++++++|. .|+.+.+++++.++.++ ++.+++++|.
T Consensus 168 ~vi~n~~~~~~~~~~~----------~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~- 235 (371)
T cd04962 168 EVIPNFVDEDRFRPKP----------DEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGD- 235 (371)
T ss_pred EEecCCcCHhhcCCCc----------hHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEcC-
Confidence 4689999887653221 13456788998888888888885 69999999999988765 5689999997
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHH
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAAS 170 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~ 170 (200)
++..+.++++++++++. ++|+|.|+. +++..+|+.||+++.|+.+++ |++++|||+||+|||+++.....+
T Consensus 236 g~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e----- 307 (371)
T cd04962 236 GPERSPAERLARELGLQ-DDVLFLGKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIPE----- 307 (371)
T ss_pred CcCHHHHHHHHHHcCCC-ceEEEecCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchh-----
Confidence 46778899999999997 999999987 468889999999999997665 999999999999999976543322
Q ss_pred HHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 171 QLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 171 ~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
++. .|..+++. .|.+++++...++++|+
T Consensus 308 ~i~-~~~~G~~~~~~~~~~l~~~i~~l~~~~ 337 (371)
T cd04962 308 VVK-HGETGFLVDVGDVEAMAEYALSLLEDD 337 (371)
T ss_pred hhc-CCCceEEcCCCCHHHHHHHHHHHHhCH
Confidence 111 13344444 37888998888888765
No 21
>PLN02939 transferase, transferring glycosyl groups
Probab=99.85 E-value=3.4e-20 Score=173.62 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=112.8
Q ss_pred eeecccccccccCCCCCC--CCCC-------CchhhhhhhhhcCCCC---CCEEEEEeCCC--CCCCHHHHHHHHHHHHH
Q psy15362 14 IVLQNGLATNQTNTKTAT--GEEV-------PQSIVITSRQQYGLPE---DAIVYCNFNQL--YKIDPSTLQMWVNVLKA 79 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~--~~~~-------~~~~~~~~R~~l~l~~---~~~v~~~~~r~--~K~~~~~l~a~~~i~~~ 79 (200)
..|+||||++.|.|.... +..+ +..-+..+|++||++. +.++|++++|+ .|+++.+++++.++++
T Consensus 728 ~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~- 806 (977)
T PLN02939 728 VGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE- 806 (977)
T ss_pred eEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh-
Confidence 468999999988764311 0000 1112456899999985 46889999996 6999999999998875
Q ss_pred CCCcEEEEEcCCccc---HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCe
Q psy15362 80 VPNSILWLLKFPAVG---EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPV 155 (200)
Q Consensus 80 ~p~~~l~ivG~~~~~---~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PV 155 (200)
++++|+|+|++ +. .+.++++++++++. ++|+|+|..+......+|+.||+||.||.+++ |++.+|||+||+|+
T Consensus 807 -~dvqLVIvGdG-p~~~~e~eL~~La~~l~l~-drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPP 883 (977)
T PLN02939 807 -LGGQFVLLGSS-PVPHIQREFEGIADQFQSN-NNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVP 883 (977)
T ss_pred -cCCEEEEEeCC-CcHHHHHHHHHHHHHcCCC-CeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCE
Confidence 57999999974 33 36788899999997 99999999986666779999999999998875 99999999999998
Q ss_pred eecC
Q psy15362 156 VTLP 159 (200)
Q Consensus 156 V~~~ 159 (200)
|+++
T Consensus 884 VVs~ 887 (977)
T PLN02939 884 IVRK 887 (977)
T ss_pred EEec
Confidence 8764
No 22
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.84 E-value=3.9e-20 Score=156.52 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=129.9
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.++|||+|++.|.+.. ......|++++++++.++++++||. .|+.+.+++++.++.++.|+.+|+++|+
T Consensus 157 ~~i~ng~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~- 227 (360)
T cd04951 157 FVVYNGIDTDRFRKDP--------ARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGD- 227 (360)
T ss_pred EEEccccchhhcCcch--------HHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcC-
Confidence 4689999987664221 1234678889999888888888874 6999999999999999899999999996
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHH
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAAS 170 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~ 170 (200)
++..+.+++.++++++. ++|.|+|++ +++..+|+.||+++.|+.+++ |++++|||++|+|||+++.....+-
T Consensus 228 g~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~---- 300 (360)
T cd04951 228 GPLRATLERLIKALGLS-NRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVREV---- 300 (360)
T ss_pred CCcHHHHHHHHHhcCCC-CcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhhE----
Confidence 46678899999999997 999999987 578889999999999987765 9999999999999999764432221
Q ss_pred HHhhcCCCcceecCHHHHHHHHHHhhc
Q psy15362 171 QLATLGCPELIARTHKEYQDIAIRLGT 197 (200)
Q Consensus 171 ~~~~~g~~~~ia~~~~~yv~~a~~l~~ 197 (200)
+...|. -+...|.+++.+...++.+
T Consensus 301 -i~~~g~-~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 301 -VGDSGL-IVPISDPEALANKIDEILK 325 (360)
T ss_pred -ecCCce-EeCCCCHHHHHHHHHHHHh
Confidence 111111 1223788888888888874
No 23
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.84 E-value=8.9e-20 Score=156.73 Aligned_cols=171 Identities=18% Similarity=0.170 Sum_probs=131.4
Q ss_pred CeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 13 GIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
-.+|+||+|.+.|.+.. .....|.+++.+.+.++++++||. .|+++.+++++.++.++.|+.+++++|+
T Consensus 189 ~~vi~ng~~~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~ 259 (398)
T cd03800 189 IRVVPPGVDLERFTPYG---------RAEARRARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGG 259 (398)
T ss_pred cEEECCCCCccceeccc---------chhhHHHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEEC
Confidence 35799999988764321 001226667777788888899986 5899999999999998899999999996
Q ss_pred Cccc-----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcch
Q psy15362 91 PAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLA 164 (200)
Q Consensus 91 ~~~~-----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~ 164 (200)
+... ...++++++++++. ++|.|+|+++.+++..+|+.||+++.|+.+++ |++++|||+||+|||+++.....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~ 338 (398)
T cd03800 260 PRDDILAMDEEELRELARELGVI-DRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPR 338 (398)
T ss_pred CCCcchhhhhHHHHHHHHhcCCC-ceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHH
Confidence 4321 24567888999997 99999999999999999999999999987665 99999999999999997644322
Q ss_pred hhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 165 SRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 165 ~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
+ ++.. +-.+++. .|.+++++...++++|+
T Consensus 339 e-----~i~~-~~~g~~~~~~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 339 D-----IVVD-GVTGLLVDPRDPEALAAALRRLLTDP 369 (398)
T ss_pred H-----HccC-CCCeEEeCCCCHHHHHHHHHHHHhCH
Confidence 2 2222 2223444 47899999998888775
No 24
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.84 E-value=7e-20 Score=156.16 Aligned_cols=158 Identities=20% Similarity=0.147 Sum_probs=121.1
Q ss_pred eecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCC--CCCCCHHHHHHHHHHHHHCCCcEEEEEcCCc
Q psy15362 15 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPA 92 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r--~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~ 92 (200)
+++||+|.+.|.+.. .+.+...++++|+ ..|+++.+++++..+.++.|+.+|+++|+ +
T Consensus 169 vi~~g~d~~~~~~~~-------------------~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~-g 228 (367)
T cd05844 169 VHPIGVDTAKFTPAT-------------------PARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGD-G 228 (367)
T ss_pred EecCCCCHHhcCCCC-------------------CCCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeC-c
Confidence 588888887654221 0122345555665 57999999999999999999999999996 4
Q ss_pred ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCC-------CCCchHHHHHHHcCCCeeecCCCcchh
Q psy15362 93 VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-------CNGHTTSMDVLWTGTPVVTLPGETLAS 165 (200)
Q Consensus 93 ~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~-------~~~g~~~lEAma~G~PVV~~~g~~~~~ 165 (200)
+..+.++++++++|+. ++|+|+|+++.+++..+|+.||+++.|+. ++.|++++|||+||+|||+++.....+
T Consensus 229 ~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e 307 (367)
T cd05844 229 PLLAALEALARALGLG-GRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPE 307 (367)
T ss_pred hHHHHHHHHHHHcCCC-CeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchh
Confidence 6677899999999997 99999999999999999999999999874 234999999999999999986543322
Q ss_pred hhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 166 RVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 166 r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
-+ .. +-..++. .|.+++++...++.+|+
T Consensus 308 ~i-----~~-~~~g~~~~~~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 308 AV-----ED-GETGLLVPEGDVAALAAALGRLLADP 337 (367)
T ss_pred he-----ec-CCeeEEECCCCHHHHHHHHHHHHcCH
Confidence 11 11 2223333 47889998888888775
No 25
>PHA01633 putative glycosyl transferase group 1
Probab=99.83 E-value=8.1e-20 Score=156.24 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=103.0
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCC-CCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCC----cEEE
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLP-EDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN----SILW 86 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~-~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~----~~l~ 86 (200)
++|+||+|++.|.+.. ......|++++.+ ++.+++++++|. .|+++.+++++.++.++.|+ .+++
T Consensus 116 i~I~~GVD~~~f~p~~--------~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ 187 (335)
T PHA01633 116 LPVFHGINFKIVENAE--------KLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFF 187 (335)
T ss_pred eeeeCCCChhhcCccc--------hhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEE
Confidence 4588999998875321 1123566666654 466788888885 69999999999999988885 4787
Q ss_pred EEcCCcccHHHHHHHHHHcCCCCCcEEEe---ccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCc
Q psy15362 87 LLKFPAVGEANIQATAQALGLDQHRILFS---NVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGET 162 (200)
Q Consensus 87 ivG~~~~~~~~l~~~~~~~gl~~~rv~f~---g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~ 162 (200)
++|+ . ..+++++. ++|+|+ |+++.+++..+|+.||+||.||.+|+ |++++||||||+|||+++...
T Consensus 188 ivG~-----~----~~~~l~l~-~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~ 257 (335)
T PHA01633 188 VISH-----K----QFTQLEVP-ANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPP 257 (335)
T ss_pred EEcH-----H----HHHHcCCC-CcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCC
Confidence 7763 1 23567786 999999 56678899999999999999998775 999999999999999985544
Q ss_pred c
Q psy15362 163 L 163 (200)
Q Consensus 163 ~ 163 (200)
+
T Consensus 258 l 258 (335)
T PHA01633 258 L 258 (335)
T ss_pred c
Confidence 3
No 26
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.83 E-value=8.4e-20 Score=160.79 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=123.6
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCC--CCCCCHHHHHHHHHHHHHCCC-----cEEE
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPN-----SILW 86 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r--~~K~~~~~l~a~~~i~~~~p~-----~~l~ 86 (200)
.+|+||+|++.|.+.+ . ...++..++++++| +.|+++.+++++.++.++.|+ .+|+
T Consensus 215 ~vi~~gvd~~~~~~~~-----------~------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lv 277 (419)
T cd03806 215 SIVYPPCDVEELLKLP-----------L------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLV 277 (419)
T ss_pred EEEcCCCCHHHhcccc-----------c------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEE
Confidence 4577888887654221 0 01233456666666 579999999999999988764 9999
Q ss_pred EEcCCcc-----cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCC-CchHHHHHHHcCCCeeecC-
Q psy15362 87 LLKFPAV-----GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTGTPVVTLP- 159 (200)
Q Consensus 87 ivG~~~~-----~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~-~g~~~lEAma~G~PVV~~~- 159 (200)
|+|++.. ..+.|++++++++++ ++|+|+|.+|.+++..+|+.||+++.|+..+ +|++++||||||+|||+++
T Consensus 278 ivG~~~~~~~~~~~~~L~~~~~~l~l~-~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ 356 (419)
T cd03806 278 LIGSCRNEDDEKRVEDLKLLAKELGLE-DKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHAS 356 (419)
T ss_pred EEcCCCCcccHHHHHHHHHHHHHhCCC-CeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcC
Confidence 9996421 236788899999998 9999999999999999999999999998655 5999999999999999875
Q ss_pred CCcchhhhHHHHHh--hcCCCcceecCHHHHHHHHHHhhcCC
Q psy15362 160 GETLASRVAASQLA--TLGCPELIARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 160 g~~~~~r~~~~~~~--~~g~~~~ia~~~~~yv~~a~~l~~d~ 199 (200)
|....+ ++. ..|..+++.+|.+++++...++++|+
T Consensus 357 ggp~~~-----iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 357 GGPLLD-----IVVPWDGGPTGFLASTAEEYAEAIEKILSLS 393 (419)
T ss_pred CCCchh-----eeeccCCCCceEEeCCHHHHHHHHHHHHhCC
Confidence 222111 111 02445567789999999999998865
No 27
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.83 E-value=7.4e-20 Score=162.84 Aligned_cols=163 Identities=11% Similarity=0.093 Sum_probs=120.1
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcC-CCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYG-LPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~-l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
.+|+||+|++.|.+.. .....|.++. .+++.++++++||+ .|+.+.+++++ ++.|+.+|+|+|+
T Consensus 232 ~vi~nGvd~~~f~p~~---------~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~----~~~~~~~l~ivG~ 298 (465)
T PLN02871 232 RVWNKGVDSESFHPRF---------RSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVM----ERLPGARLAFVGD 298 (465)
T ss_pred EEeCCccCccccCCcc---------ccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHH----HhCCCcEEEEEeC
Confidence 3589999998875321 1133455553 34467788888986 57776666654 4568999999997
Q ss_pred CcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHH
Q psy15362 91 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAA 169 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~ 169 (200)
++.++.+++++++ .+|+|+|+++++++..+|+.||++|.||..++ |++++||||||+|||+++.....+
T Consensus 299 -G~~~~~l~~~~~~-----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~e---- 368 (465)
T PLN02871 299 -GPYREELEKMFAG-----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGGIPD---- 368 (465)
T ss_pred -ChHHHHHHHHhcc-----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCCcHh----
Confidence 4667778877763 56999999999999999999999999997665 999999999999999876432221
Q ss_pred HHHhh--cCCCccee--cCHHHHHHHHHHhhcCCC
Q psy15362 170 SQLAT--LGCPELIA--RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 170 ~~~~~--~g~~~~ia--~~~~~yv~~a~~l~~d~e 200 (200)
++.. .|-.+++. .|.+++.+...++++|++
T Consensus 369 -iv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 369 -IIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPE 402 (465)
T ss_pred -hhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 2222 24445554 588999999999888763
No 28
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.83 E-value=7.6e-20 Score=173.22 Aligned_cols=179 Identities=10% Similarity=0.073 Sum_probs=128.3
Q ss_pred CeeecccccccccCCCCCCCC----------CCC-chhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHH
Q psy15362 13 GIVLQNGLATNQTNTKTATGE----------EVP-QSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKA 79 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~----------~~~-~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~ 79 (200)
..+||||+|++.|.+.....+ ..+ .++...++. +..+++..++++++|+ .|+++.+++||..+.+.
T Consensus 429 i~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r-~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l 507 (1050)
T TIGR02468 429 MAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMR-FFTNPRKPMILALARPDPKKNITTLVKAFGECRPL 507 (1050)
T ss_pred eEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHh-hcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhh
Confidence 368999999999976421110 001 111223443 4456777788888986 69999999999998753
Q ss_pred --CCCcEEEEEcCCcc----------cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccc----cEEEeCCCCCC-c
Q psy15362 80 --VPNSILWLLKFPAV----------GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----DVCLDTPLCNG-H 142 (200)
Q Consensus 80 --~p~~~l~ivG~~~~----------~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~a----Dv~l~~~~~~~-g 142 (200)
.++.+ +++|.+.. ....++++++++++. ++|.|+|+++.+++..+|+.| |+|+.||.+++ |
T Consensus 508 ~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~-g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFG 585 (1050)
T TIGR02468 508 RELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLY-GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFG 585 (1050)
T ss_pred ccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCC-CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCC
Confidence 35665 45675321 124578899999998 999999999999999999988 69999997765 9
Q ss_pred hHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCCC
Q psy15362 143 TTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 143 ~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~e 200 (200)
++++||||||+|||+++-....+ ++ ..|.++++. .|.+++.+...++++|++
T Consensus 586 LvlLEAMAcGlPVVASdvGG~~E-----II-~~g~nGlLVdP~D~eaLA~AL~~LL~Dpe 639 (1050)
T TIGR02468 586 LTLIEAAAHGLPMVATKNGGPVD-----IH-RVLDNGLLVDPHDQQAIADALLKLVADKQ 639 (1050)
T ss_pred HHHHHHHHhCCCEEEeCCCCcHH-----Hh-ccCCcEEEECCCCHHHHHHHHHHHhhCHH
Confidence 99999999999999975332221 11 124455554 488899999888888763
No 29
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.83 E-value=1.3e-19 Score=152.20 Aligned_cols=170 Identities=21% Similarity=0.272 Sum_probs=131.9
Q ss_pred CeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 13 GIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
..+++||+|.+.|.+.. ....|+.++++++.+.++++|+. .|+.+.+++++.++.++.++.+++++|.
T Consensus 172 ~~vi~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~ 241 (374)
T cd03817 172 IEVIPTGIDLDRFEPVD----------GDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGD 241 (374)
T ss_pred eEEcCCccchhccCccc----------hhHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 36789999987764321 12236677888888888888875 5889999999999988889999999996
Q ss_pred CcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCC-CchHHHHHHHcCCCeeecCCCcchhhhHH
Q psy15362 91 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTGTPVVTLPGETLASRVAA 169 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~-~g~~~lEAma~G~PVV~~~g~~~~~r~~~ 169 (200)
++..+.++++++++++. ++|+|+|+++.+++..+|+.||+++.|+..+ +|++++|||+||+|||+++.....+.+
T Consensus 242 -~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i-- 317 (374)
T cd03817 242 -GPEREELEELARELGLA-DRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLV-- 317 (374)
T ss_pred -CchHHHHHHHHHHcCCC-CcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhhhe--
Confidence 46678899999999997 9999999999999999999999999998765 489999999999999998654432211
Q ss_pred HHHhhcCCCccee-cCHHHHHHHHHHhhcCCC
Q psy15362 170 SQLATLGCPELIA-RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 170 ~~~~~~g~~~~ia-~~~~~yv~~a~~l~~d~e 200 (200)
. .+-.+++. .+.+++++.+.++.+|++
T Consensus 318 ---~-~~~~g~~~~~~~~~~~~~i~~l~~~~~ 345 (374)
T cd03817 318 ---A-DGENGFLFPPGDEALAEALLRLLQDPE 345 (374)
T ss_pred ---e-cCceeEEeCCCCHHHHHHHHHHHhChH
Confidence 1 12233444 333388888888887763
No 30
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.83 E-value=1.4e-19 Score=155.62 Aligned_cols=137 Identities=13% Similarity=0.096 Sum_probs=109.2
Q ss_pred CEEEEEeCCC----CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCC--HHHHHhh
Q psy15362 53 AIVYCNFNQL----YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--KEEHVRR 126 (200)
Q Consensus 53 ~~v~~~~~r~----~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~--~~~~~~~ 126 (200)
.++++++||. .|+++.+++++.++. ++.+|+++|++ +.++.++++++++++. ++|+|+|+++ .+++..+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g-~~~~~l~~~~~~~~l~-~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDG-SDFEKCKAYSRELGIE-QRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCC-ccHHHHHHHHHHcCCC-CeEEEecccCCcHHHHHHH
Confidence 4566777774 488888999888653 47999999974 6788999999999997 9999999985 4788888
Q ss_pred cccccEEEeCCCCCC-chHHHHHHHcCCCeeecC-CCcchhhhHHHHHhhcCCCcce--ecCHHHHHHHHHHhhcCCC
Q psy15362 127 GQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLP-GETLASRVAASQLATLGCPELI--ARTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~-g~~~~~r~~~~~~~~~g~~~~i--a~~~~~yv~~a~~l~~d~e 200 (200)
|..+|+++.||.+++ |++++||||||+|||+++ .....+ ++. .|..+++ ..|.+++++....+.+|++
T Consensus 255 ~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~e-----iv~-~~~~G~lv~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 255 IKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRD-----IIK-PGLNGELYTPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred HhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChHH-----Hcc-CCCceEEECCCCHHHHHHHHHHHHhCcc
Confidence 999999999998776 999999999999999987 432221 222 2445544 3689999999999998874
No 31
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.83 E-value=7.8e-20 Score=163.27 Aligned_cols=162 Identities=16% Similarity=0.202 Sum_probs=124.3
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+||||+|++.|.+... . ..+.+.++++++||. .|+.+.+++++..+.++.|+++++++|.+
T Consensus 270 ~vIpNgid~~~f~~~~~---------------~-~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g 333 (475)
T cd03813 270 RVIPNGIDPERFAPARR---------------A-RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPT 333 (475)
T ss_pred EEeCCCcCHHHcCCccc---------------c-ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 46899999987743210 0 233556788888885 69999999999999999999999999964
Q ss_pred cc---cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhh
Q psy15362 92 AV---GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRV 167 (200)
Q Consensus 92 ~~---~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~ 167 (200)
.. ..++++++++++|+. ++|+|+|+ +++..+|+.+|+++.||..++ |++++||||||+|||+++-..+.+
T Consensus 334 ~~~~~~~~e~~~li~~l~l~-~~V~f~G~---~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~e-- 407 (475)
T cd03813 334 DEDPEYAEECRELVESLGLE-DNVKFTGF---QNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCRE-- 407 (475)
T ss_pred CcChHHHHHHHHHHHHhCCC-CeEEEcCC---ccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChHH--
Confidence 21 245688899999998 99999993 577788999999999987665 999999999999999975443322
Q ss_pred HHHHHhh-----cCCCccee--cCHHHHHHHHHHhhcCCC
Q psy15362 168 AASQLAT-----LGCPELIA--RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 168 ~~~~~~~-----~g~~~~ia--~~~~~yv~~a~~l~~d~e 200 (200)
++.. .|..+++. .|.+++++...++++|++
T Consensus 408 ---lv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 408 ---LIEGADDEALGPAGEVVPPADPEALARAILRLLKDPE 444 (475)
T ss_pred ---HhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHH
Confidence 2222 24445443 588999999999988763
No 32
>PRK14098 glycogen synthase; Provisional
Probab=99.82 E-value=2.4e-19 Score=160.84 Aligned_cols=141 Identities=13% Similarity=-0.003 Sum_probs=110.5
Q ss_pred eeecccccccccCCCCCC--CCCC-C------chhhhhhhhhcCCCC--CCEEEEEeCCC--CCCCHHHHHHHHHHHHHC
Q psy15362 14 IVLQNGLATNQTNTKTAT--GEEV-P------QSIVITSRQQYGLPE--DAIVYCNFNQL--YKIDPSTLQMWVNVLKAV 80 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~--~~~~-~------~~~~~~~R~~l~l~~--~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~ 80 (200)
..|+||+|++.|.+.... +..+ . ...+..+++++|++. +.+++++++|+ .|+++.+++++.++.+
T Consensus 257 ~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~-- 334 (489)
T PRK14098 257 HGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE-- 334 (489)
T ss_pred eEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--
Confidence 358999999988754321 0011 0 112356788899984 56889999986 6999999999999875
Q ss_pred CCcEEEEEcCCcc-cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeec
Q psy15362 81 PNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 81 p~~~l~ivG~~~~-~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~ 158 (200)
++++|+++|++.. .++.++++++++ . ++|.|+|.++.+++..+|+.||+||.||.+|+ |++.+|||+||+|+|++
T Consensus 335 ~~~~lvivG~G~~~~~~~l~~l~~~~--~-~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~ 411 (489)
T PRK14098 335 LDIQLVICGSGDKEYEKRFQDFAEEH--P-EQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAY 411 (489)
T ss_pred cCcEEEEEeCCCHHHHHHHHHHHHHC--C-CCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEe
Confidence 4799999997422 246788888875 4 88999999998888999999999999998775 99999999999988876
Q ss_pred C
Q psy15362 159 P 159 (200)
Q Consensus 159 ~ 159 (200)
.
T Consensus 412 ~ 412 (489)
T PRK14098 412 A 412 (489)
T ss_pred c
Confidence 4
No 33
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.82 E-value=3.5e-19 Score=148.93 Aligned_cols=166 Identities=22% Similarity=0.274 Sum_probs=128.9
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+++||+|.+.|.+.. ......|++++++++.++++++|+. .|+.+.+++++.++.++.|+.+++++|.+
T Consensus 162 ~vi~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~ 233 (365)
T cd03807 162 VVIPNGVDTERFSPDL--------DARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDG 233 (365)
T ss_pred eEeCCCcCHHhcCCcc--------cchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4688999887664321 1124567789999988888999985 68999999999999988999999999964
Q ss_pred cccHHHHHHHHH-HcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHH
Q psy15362 92 AVGEANIQATAQ-ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAA 169 (200)
Q Consensus 92 ~~~~~~l~~~~~-~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~ 169 (200)
.....++.... +.++. ++|.|.|.. +++..+|+.||+++.|+.+++ |++++|||+||+|||+++.....+
T Consensus 234 -~~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~e---- 305 (365)
T cd03807 234 -PDRANLELLALKELGLE-DKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNAE---- 305 (365)
T ss_pred -cchhHHHHHHHHhcCCC-ceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChHH----
Confidence 55666777776 88887 999999976 578889999999999997765 999999999999999976543222
Q ss_pred HHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 170 SQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 170 ~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
++.. .+++. ++.+++.+...++.+|+
T Consensus 306 -~~~~---~g~~~~~~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 306 -LVGD---TGFLVPPGDPEALAEAIEALLADP 333 (365)
T ss_pred -Hhhc---CCEEeCCCCHHHHHHHHHHHHhCh
Confidence 2222 23332 57888998888888775
No 34
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.82 E-value=2.9e-19 Score=165.95 Aligned_cols=175 Identities=9% Similarity=0.058 Sum_probs=119.5
Q ss_pred eecccccccccCCCCCCCCCC---Cchh------hhhhhhhcCC--CCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCC
Q psy15362 15 VLQNGLATNQTNTKTATGEEV---PQSI------VITSRQQYGL--PEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVP 81 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~~---~~~~------~~~~R~~l~l--~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p 81 (200)
+||+|+|++.|.+-....... ...+ ....++.+|+ +++..++++++|+ .|+++.+++++.++.+..+
T Consensus 501 VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~ 580 (784)
T TIGR02470 501 IVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRE 580 (784)
T ss_pred EECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCC
Confidence 789999999886532111000 0000 1234567786 5677888899986 6999999999988765567
Q ss_pred CcEEEEEcCCcc-----------cHHHHHHHHHHcCCCCCcEEEeccC-CHHHHHhhcc----cccEEEeCCCCCC-chH
Q psy15362 82 NSILWLLKFPAV-----------GEANIQATAQALGLDQHRILFSNVA-AKEEHVRRGQ----LADVCLDTPLCNG-HTT 144 (200)
Q Consensus 82 ~~~l~ivG~~~~-----------~~~~l~~~~~~~gl~~~rv~f~g~~-~~~~~~~~~~----~aDv~l~~~~~~~-g~~ 144 (200)
+++|+|+|++.. ..++++++++++|+. ++|+|+|++ +..+...+|+ .+|+|+.||.+|+ |++
T Consensus 581 ~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~-g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLv 659 (784)
T TIGR02470 581 LVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLH-GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLT 659 (784)
T ss_pred CeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCC-CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHH
Confidence 899999996421 113567789999998 999999975 4444434443 4589999998765 999
Q ss_pred HHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhh
Q psy15362 145 SMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLG 196 (200)
Q Consensus 145 ~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~ 196 (200)
++||||||+|||+++.....+ ++ ..|..+++. .|.+++.+...++.
T Consensus 660 vLEAMAcGlPVVAT~~GG~~E-----iV-~dg~tGfLVdp~D~eaLA~aL~~ll 707 (784)
T TIGR02470 660 VLEAMTCGLPTFATRFGGPLE-----II-QDGVSGFHIDPYHGEEAAEKIVDFF 707 (784)
T ss_pred HHHHHHcCCCEEEcCCCCHHH-----Hh-cCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 999999999999975432222 11 125555554 36777777766653
No 35
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.82 E-value=6.7e-19 Score=149.11 Aligned_cols=169 Identities=15% Similarity=0.202 Sum_probs=124.7
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+|+||+|++.|.+... +.......|++++++++.++++++||. .|+++.+++++.++.+..++.+++++|.+
T Consensus 151 ~~i~ngi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~ 225 (355)
T cd03819 151 RVIPRGVDLDRFDPGAV-----PPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA 225 (355)
T ss_pred EEecCCccccccCcccc-----chHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 35899999887643221 111123367888888888888999985 69999999999999888889999999974
Q ss_pred ccc---HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCC-CCCC-chHHHHHHHcCCCeeecCCCcchhh
Q psy15362 92 AVG---EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNG-HTTSMDVLWTGTPVVTLPGETLASR 166 (200)
Q Consensus 92 ~~~---~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~-~~~~-g~~~lEAma~G~PVV~~~g~~~~~r 166 (200)
... .+.+++.++++++. ++|+|+|+. +++..+|+.||+++.|+ .+++ |++++|||+||+|||+++.....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e- 301 (355)
T cd03819 226 QGRRFYYAELLELIKRLGLQ-DRVTFVGHC--SDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARE- 301 (355)
T ss_pred cccchHHHHHHHHHHHcCCc-ceEEEcCCc--ccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHH-
Confidence 321 23456678888997 999999994 68889999999999998 5554 999999999999999986443322
Q ss_pred hHHHHHhhcCCCccee--cCHHHHHHHHHHhh
Q psy15362 167 VAASQLATLGCPELIA--RTHKEYQDIAIRLG 196 (200)
Q Consensus 167 ~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~ 196 (200)
++.. +..+++. +|.+++++....++
T Consensus 302 ----~i~~-~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 302 ----TVRP-GETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred ----HHhC-CCceEEeCCCCHHHHHHHHHHHH
Confidence 2222 2233433 57778887764444
No 36
>PLN02316 synthase/transferase
Probab=99.81 E-value=5.5e-19 Score=167.65 Aligned_cols=143 Identities=15% Similarity=0.031 Sum_probs=109.1
Q ss_pred eeecccccccccCCCCC--CCCCC--------CchhhhhhhhhcCCCC-CCEEEEEeCCC--CCCCHHHHHHHHHHHHHC
Q psy15362 14 IVLQNGLATNQTNTKTA--TGEEV--------PQSIVITSRQQYGLPE-DAIVYCNFNQL--YKIDPSTLQMWVNVLKAV 80 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~--~~~~~--------~~~~~~~~R~~l~l~~-~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~ 80 (200)
..|+||||++.|.+... .+..+ +...+..+|++||++. +.+++++++|+ .|+++.+++++.++++
T Consensus 790 ~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~-- 867 (1036)
T PLN02316 790 HGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE-- 867 (1036)
T ss_pred EEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--
Confidence 36899999988765321 11000 0112356789999984 67899999996 6999999999999886
Q ss_pred CCcEEEEEcCCccc---HHHHHHHHHHcCCC-CCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCe
Q psy15362 81 PNSILWLLKFPAVG---EANIQATAQALGLD-QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPV 155 (200)
Q Consensus 81 p~~~l~ivG~~~~~---~~~l~~~~~~~gl~-~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PV 155 (200)
++++|+|+|++ ++ ++.++++++++++. +++|.|.+..+......+|+.||+||.||.+|+ |++.+|||+||+|+
T Consensus 868 ~~~qlVIvG~G-pd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~Gtpp 946 (1036)
T PLN02316 868 RNGQVVLLGSA-PDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIP 946 (1036)
T ss_pred cCcEEEEEeCC-CCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCe
Confidence 47999999974 33 46788899998763 389999987764333468999999999998875 99999999999988
Q ss_pred eecC
Q psy15362 156 VTLP 159 (200)
Q Consensus 156 V~~~ 159 (200)
|+++
T Consensus 947 Vvs~ 950 (1036)
T PLN02316 947 VVRK 950 (1036)
T ss_pred EEEc
Confidence 8754
No 37
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.81 E-value=6.6e-19 Score=154.79 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=111.3
Q ss_pred CCCEEEEEeCCC--CCCCHHHHHHHHHHHHH------CCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHH
Q psy15362 51 EDAIVYCNFNQL--YKIDPSTLQMWVNVLKA------VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEE 122 (200)
Q Consensus 51 ~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~------~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~ 122 (200)
++..++++++|+ .|+++.+++|+..+.+. .|+.+|+++|+ |+.++.++++++++|++ +.++|.|+++.++
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~-G~~~~~l~~~~~~~~l~-~~~~~~g~~~~~~ 307 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGK-GPLKEKYLERIKELKLK-KVTIRTPWLSAED 307 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEec-CccHHHHHHHHHHcCCC-cEEEEcCcCCHHH
Confidence 344667777875 69999999999988753 47899999997 47789999999999996 7777778999999
Q ss_pred HHhhcccccEEEeCCC----CCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCHHHHHHHHHHhhcC
Q psy15362 123 HVRRGQLADVCLDTPL----CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 198 (200)
Q Consensus 123 ~~~~~~~aDv~l~~~~----~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d 198 (200)
+..+|+.||+++.+++ ++.|++++||||||+|||+++..... .++. .|..+++.+|.+++.+...+|++|
T Consensus 308 ~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~-----eiv~-~~~~G~lv~d~~~la~~i~~ll~~ 381 (415)
T cd03816 308 YPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCID-----ELVK-HGENGLVFGDSEELAEQLIDLLSN 381 (415)
T ss_pred HHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHH-----HHhc-CCCCEEEECCHHHHHHHHHHHHhc
Confidence 9999999999985432 23489999999999999997643222 2222 255566668999999999999888
No 38
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.81 E-value=7.9e-19 Score=156.46 Aligned_cols=178 Identities=17% Similarity=0.077 Sum_probs=120.3
Q ss_pred eeecccccccccCCCCCCC--CCC-------CchhhhhhhhhcCCCC-CCEEEEEeCCC--CCCCHHHHHHHHHHHHHCC
Q psy15362 14 IVLQNGLATNQTNTKTATG--EEV-------PQSIVITSRQQYGLPE-DAIVYCNFNQL--YKIDPSTLQMWVNVLKAVP 81 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~--~~~-------~~~~~~~~R~~l~l~~-~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p 81 (200)
..|+||+|++.|.+..... ..+ ....+..+|+++|+++ +.++++++||+ .|+.+.+++++.++.++
T Consensus 233 ~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~-- 310 (466)
T PRK00654 233 SGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ-- 310 (466)
T ss_pred eEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--
Confidence 4689999999886542110 000 0112356788999985 67888899985 69999999999998764
Q ss_pred CcEEEEEcCCcc-cHHHHHHHHHHcCCCCCcEEE-eccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeec
Q psy15362 82 NSILWLLKFPAV-GEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 82 ~~~l~ivG~~~~-~~~~l~~~~~~~gl~~~rv~f-~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~ 158 (200)
+.+|+++|++.. ..+.+++++++++ +++.+ .|+ +.+....+|+.||+||.||.+|+ |++.+|||+||+|+|++
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~---~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~ 386 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYP---GKVGVQIGY-DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVR 386 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCC---CcEEEEEeC-CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEe
Confidence 799999997432 3467888888875 44654 666 55556678999999999998876 99999999999999987
Q ss_pred CCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhc
Q psy15362 159 PGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT 197 (200)
Q Consensus 159 ~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~ 197 (200)
+.....+-+..+.-...+-.+++. .|.+++.+...++++
T Consensus 387 ~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 387 RTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred CCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 533222111000000001223443 477777776666543
No 39
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.80 E-value=7.8e-19 Score=157.78 Aligned_cols=133 Identities=10% Similarity=-0.000 Sum_probs=104.7
Q ss_pred EEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccccc
Q psy15362 54 IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD 131 (200)
Q Consensus 54 ~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aD 131 (200)
..++++||+ .|+++.+++|+.++.++.|+++|.++|++ +..+.++++++++++. ++|+|+|+.+ +..+|+.||
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G-~~~~~l~~~i~~~~l~-~~V~f~G~~~---~~~~~~~ad 394 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEG-GEKQKLQKIINENQAQ-DYIHLKGHRN---LSEVYKDYE 394 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECc-hhHHHHHHHHHHcCCC-CeEEEcCCCC---HHHHHHhCC
Confidence 456677775 69999999999999999999999999974 6678899999999998 9999999874 555788999
Q ss_pred EEEeCCCCCC-chHHHHHHHcCCCeeecCCC-cchhhhHHHHHhhcCCCcceec------C----HHHHHHHHHHhhc
Q psy15362 132 VCLDTPLCNG-HTTSMDVLWTGTPVVTLPGE-TLASRVAASQLATLGCPELIAR------T----HKEYQDIAIRLGT 197 (200)
Q Consensus 132 v~l~~~~~~~-g~~~lEAma~G~PVV~~~g~-~~~~r~~~~~~~~~g~~~~ia~------~----~~~yv~~a~~l~~ 197 (200)
+|+.||.+|+ |++++||||||+|||+++-. ... .++ ..|..+++.+ | .+++++...+|++
T Consensus 395 v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~-----eiI-~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~ 466 (500)
T TIGR02918 395 LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNP-----TFI-EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN 466 (500)
T ss_pred EEEEcCccccccHHHHHHHHhCCCEEEecCCCCCH-----HHc-cCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC
Confidence 9999997665 99999999999999997521 111 122 2255666553 2 6677777777764
No 40
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.80 E-value=1.3e-18 Score=155.09 Aligned_cols=179 Identities=15% Similarity=0.015 Sum_probs=123.8
Q ss_pred eeecccccccccCCCCCCC--CCC-------CchhhhhhhhhcCCCC--CCEEEEEeCCC--CCCCHHHHHHHHHHHHHC
Q psy15362 14 IVLQNGLATNQTNTKTATG--EEV-------PQSIVITSRQQYGLPE--DAIVYCNFNQL--YKIDPSTLQMWVNVLKAV 80 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~--~~~-------~~~~~~~~R~~l~l~~--~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~ 80 (200)
..|+||+|++.|.+..... ..+ ....+..+|+++|++. +.++++++||+ .|+.+.+++++.++.++
T Consensus 241 ~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~- 319 (473)
T TIGR02095 241 RGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL- 319 (473)
T ss_pred EEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc-
Confidence 3699999999886532100 000 1112356889999986 67888999986 69999999999998764
Q ss_pred CCcEEEEEcCCc-ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeec
Q psy15362 81 PNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 81 p~~~l~ivG~~~-~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~ 158 (200)
+++|+++|.+. ...+.+++++++++ +++.|.+..+.++...+|+.||+++.||.+++ |++.+|||+||+|||++
T Consensus 320 -~~~lvi~G~g~~~~~~~l~~~~~~~~---~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s 395 (473)
T TIGR02095 320 -GGQLVVLGTGDPELEEALRELAERYP---GNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVR 395 (473)
T ss_pred -CcEEEEECCCCHHHHHHHHHHHHHCC---CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEc
Confidence 59999999752 23467777777643 67888888887788889999999999998875 99999999999999987
Q ss_pred CCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhc
Q psy15362 159 PGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT 197 (200)
Q Consensus 159 ~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~ 197 (200)
+.....+-+..+.-...+-.+++. .|.+++.+...+++.
T Consensus 396 ~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 396 RTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred cCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 543322211100000011233443 477777777665544
No 41
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.80 E-value=1.4e-18 Score=149.76 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=121.4
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+|+||+|++.|.+. .....|++++++++.++++++||+ .|+++.+++++.++. ++.+++++|++
T Consensus 172 ~vi~ng~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g 238 (388)
T TIGR02149 172 HVIYNGIDTKEYKPD----------DGNVVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGA 238 (388)
T ss_pred EEecCCCChhhcCCC----------chHHHHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCC
Confidence 368999998876421 124578889999888888899986 599999999998774 46888888754
Q ss_pred ccc---HHHHHHHHHHcCCCCCcEEEe-ccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhh
Q psy15362 92 AVG---EANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASR 166 (200)
Q Consensus 92 ~~~---~~~l~~~~~~~gl~~~rv~f~-g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r 166 (200)
+.. .+.+++.+++++...++|+|. |+++.+++..+|+.||+++.||.+++ |++++|||+||+|||+++.....+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e- 317 (388)
T TIGR02149 239 PDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPE- 317 (388)
T ss_pred CCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHH-
Confidence 321 345677777776632557764 67899999999999999999997665 999999999999999986543322
Q ss_pred hHHHHHhhcCCCccee--cCH------HHHHHHHHHhhcCC
Q psy15362 167 VAASQLATLGCPELIA--RTH------KEYQDIAIRLGTDR 199 (200)
Q Consensus 167 ~~~~~~~~~g~~~~ia--~~~------~~yv~~a~~l~~d~ 199 (200)
++. .+..+++. ++. +++.+...++.+|+
T Consensus 318 ----~i~-~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~ 353 (388)
T TIGR02149 318 ----VVV-DGETGFLVPPDNSDADGFQAELAKAINILLADP 353 (388)
T ss_pred ----Hhh-CCCceEEcCCCCCcccchHHHHHHHHHHHHhCH
Confidence 121 13333333 234 67887777777765
No 42
>KOG1111|consensus
Probab=99.80 E-value=4.6e-19 Score=149.36 Aligned_cols=127 Identities=18% Similarity=0.171 Sum_probs=107.9
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCC-CCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPE-DAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~-~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
.+|||-+++..|.|.+.. -+. +-..++.++|+ .|+.|.+++.++++.+++|+++++++|+
T Consensus 172 svIPnAv~~~~f~P~~~~-----------------~~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GD 234 (426)
T KOG1111|consen 172 SVIPNAVVTHTFTPDAAD-----------------KPSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGD 234 (426)
T ss_pred eeccceeeccccccCccc-----------------cCCCCeeEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecC
Confidence 358999999988764311 122 22556667775 7999999999999999999999999998
Q ss_pred CcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCC-CCchHHHHHHHcCCCeeecC
Q psy15362 91 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~-~~g~~~lEAma~G~PVV~~~ 159 (200)
| |.+..+++..+++.+. +||.++|.++++++...|..-||||+||-. .+|++++||++||+|||++.
T Consensus 235 G-Pk~i~lee~lEk~~l~-~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTr 302 (426)
T KOG1111|consen 235 G-PKRIDLEEMLEKLFLQ-DRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTR 302 (426)
T ss_pred C-cccchHHHHHHHhhcc-CceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEee
Confidence 4 7778899999999998 999999999999999999999999999965 46999999999999999853
No 43
>PLN02949 transferase, transferring glycosyl groups
Probab=99.80 E-value=9e-19 Score=156.07 Aligned_cols=140 Identities=16% Similarity=0.103 Sum_probs=108.3
Q ss_pred EEEEEeCC--CCCCCHHHHHHHHHHHHH----CCCcEEEEEcCCcc-----cHHHHHHHHHHcCCCCCcEEEeccCCHHH
Q psy15362 54 IVYCNFNQ--LYKIDPSTLQMWVNVLKA----VPNSILWLLKFPAV-----GEANIQATAQALGLDQHRILFSNVAAKEE 122 (200)
Q Consensus 54 ~v~~~~~r--~~K~~~~~l~a~~~i~~~----~p~~~l~ivG~~~~-----~~~~l~~~~~~~gl~~~rv~f~g~~~~~~ 122 (200)
..++++|| +.|+++.++++|+++.++ .|+.+|+|+|++.. ..++++++++++|++ ++|.|+|+++.++
T Consensus 269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~-~~V~f~g~v~~~e 347 (463)
T PLN02949 269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLD-GDVEFHKNVSYRD 347 (463)
T ss_pred CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCC-CcEEEeCCCCHHH
Confidence 44556666 579999999999988764 47899999997421 125688999999998 9999999999999
Q ss_pred HHhhcccccEEEeCCCCC-CchHHHHHHHcCCCeeecCCCcchhhhHHHHHhh--cCCCcceecCHHHHHHHHHHhhcC
Q psy15362 123 HVRRGQLADVCLDTPLCN-GHTTSMDVLWTGTPVVTLPGETLASRVAASQLAT--LGCPELIARTHKEYQDIAIRLGTD 198 (200)
Q Consensus 123 ~~~~~~~aDv~l~~~~~~-~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~--~g~~~~ia~~~~~yv~~a~~l~~d 198 (200)
+..+|+.||+++.|+..| +|++++||||||+|||+++...... .++.. .|..+++.+|.++|.+...++++|
T Consensus 348 l~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~----eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 348 LVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM----DIVLDEDGQQTGFLATTVEEYADAILEVLRM 422 (463)
T ss_pred HHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc----eeeecCCCCcccccCCCHHHHHHHHHHHHhC
Confidence 999999999999988655 5999999999999999975221100 01110 144456678999999999888874
No 44
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.80 E-value=4.5e-19 Score=136.75 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=121.4
Q ss_pred hhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHH-CCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc
Q psy15362 41 ITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKA-VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV 117 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~-~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~ 117 (200)
...|..++.+.+..++++++|. .|+++.+++++..+.++ .++.+++++|. +.....++..++.+++. ++++|.|+
T Consensus 3 ~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~~~-~~i~~~~~ 80 (172)
T PF00534_consen 3 DKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGD-GEYKKELKNLIEKLNLK-ENIIFLGY 80 (172)
T ss_dssp HHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESH-CCHHHHHHHHHHHTTCG-TTEEEEES
T ss_pred HHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcc-ccccccccccccccccc-cccccccc
Confidence 5678888999999999999985 58999999999998875 89999999995 35567899999999997 99999999
Q ss_pred CCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHH
Q psy15362 118 AAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIR 194 (200)
Q Consensus 118 ~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~ 194 (200)
++.+++..+|+.||+++.|+.+++ |++++|||+||+|||++....+.+.+ .. +.++++. .+.+++++.+.+
T Consensus 81 ~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~-----~~-~~~g~~~~~~~~~~l~~~i~~ 154 (172)
T PF00534_consen 81 VPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEII-----ND-GVNGFLFDPNDIEELADAIEK 154 (172)
T ss_dssp HSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHS-----GT-TTSEEEESTTSHHHHHHHHHH
T ss_pred ccccccccccccceeccccccccccccccccccccccceeeccccCCceee-----cc-ccceEEeCCCCHHHHHHHHHH
Confidence 999999999999999999998765 99999999999999998755433222 12 3345554 466899999988
Q ss_pred hhcCC
Q psy15362 195 LGTDR 199 (200)
Q Consensus 195 l~~d~ 199 (200)
+++|+
T Consensus 155 ~l~~~ 159 (172)
T PF00534_consen 155 LLNDP 159 (172)
T ss_dssp HHHHH
T ss_pred HHCCH
Confidence 88764
No 45
>PRK14099 glycogen synthase; Provisional
Probab=99.80 E-value=1.6e-18 Score=155.34 Aligned_cols=138 Identities=22% Similarity=0.117 Sum_probs=101.6
Q ss_pred eeecccccccccCCCCCCC--CCCC-------chhhhhhhhhcCCCC--CCEEEEEeCCC--CCCCHHHHHHHHHHHHHC
Q psy15362 14 IVLQNGLATNQTNTKTATG--EEVP-------QSIVITSRQQYGLPE--DAIVYCNFNQL--YKIDPSTLQMWVNVLKAV 80 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~--~~~~-------~~~~~~~R~~l~l~~--~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~ 80 (200)
..|+||+|++.|.+..... ..+. ...+..+|+++|++. +.+++++++|+ .|+.+.+++++.++.+
T Consensus 245 ~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~-- 322 (485)
T PRK14099 245 SGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLG-- 322 (485)
T ss_pred EEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHh--
Confidence 3588999999886542110 0000 011346788999985 46788889985 6999999999998875
Q ss_pred CCcEEEEEcCCcc-cHHHHHHHHHHcCCCCCcE-EEeccCCHHHHHhhc-ccccEEEeCCCCCC-chHHHHHHHcCCCee
Q psy15362 81 PNSILWLLKFPAV-GEANIQATAQALGLDQHRI-LFSNVAAKEEHVRRG-QLADVCLDTPLCNG-HTTSMDVLWTGTPVV 156 (200)
Q Consensus 81 p~~~l~ivG~~~~-~~~~l~~~~~~~gl~~~rv-~f~g~~~~~~~~~~~-~~aDv~l~~~~~~~-g~~~lEAma~G~PVV 156 (200)
.+.+|+++|++.. .++.+++++++++ +++ +|+|+. +++..+| +.||+||.||.+|+ |++.+|||+||+|+|
T Consensus 323 ~~~~lvivG~G~~~~~~~l~~l~~~~~---~~v~~~~G~~--~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppV 397 (485)
T PRK14099 323 EGAQLALLGSGDAELEARFRAAAQAYP---GQIGVVIGYD--EALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPV 397 (485)
T ss_pred cCcEEEEEecCCHHHHHHHHHHHHHCC---CCEEEEeCCC--HHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcE
Confidence 3789999997432 3567888887754 445 789983 6777776 57999999998775 999999999997666
Q ss_pred ec
Q psy15362 157 TL 158 (200)
Q Consensus 157 ~~ 158 (200)
++
T Consensus 398 vs 399 (485)
T PRK14099 398 VA 399 (485)
T ss_pred Ee
Confidence 54
No 46
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.79 E-value=3e-18 Score=144.82 Aligned_cols=166 Identities=20% Similarity=0.148 Sum_probs=124.2
Q ss_pred eCeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEc
Q psy15362 12 NGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLK 89 (200)
Q Consensus 12 ~gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG 89 (200)
+...+|||+|++.|.++.. ... ..+..+.+.++++++||. .|+.+.+++++.++. +.+++++|
T Consensus 161 ~~~~i~~gi~~~~~~~~~~----------~~~-~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G 225 (357)
T cd03795 161 KVRVIPLGLDPARYPRPDA----------LEE-AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVG 225 (357)
T ss_pred ceEEecCCCChhhcCCcch----------hhh-HhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEe
Confidence 3467899999887643210 000 223445666777888875 689999999998765 79999999
Q ss_pred CCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCC---CCCchHHHHHHHcCCCeeecCCCcchhh
Q psy15362 90 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL---CNGHTTSMDVLWTGTPVVTLPGETLASR 166 (200)
Q Consensus 90 ~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~---~~~g~~~lEAma~G~PVV~~~g~~~~~r 166 (200)
. ++..+.+++.+++++.. ++|+|+|+++.+++..+|+.||+++.|+. +++|++++|||+||+|||+++......
T Consensus 226 ~-g~~~~~~~~~~~~~~~~-~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~- 302 (357)
T cd03795 226 E-GPLEAELEALAAALGLL-DRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS- 302 (357)
T ss_pred C-ChhHHHHHHHHHhcCCc-ceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh-
Confidence 7 46677889999888997 99999999999999999999999999874 334999999999999999976433221
Q ss_pred hHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 167 VAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 167 ~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
.+..-+-.+++. +|.+++++....+.+|+
T Consensus 303 ----~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 303 ----YVNLHGVTGLVVPPGDPAALAEAIRRLLEDP 333 (357)
T ss_pred ----HHhhCCCceEEeCCCCHHHHHHHHHHHHHCH
Confidence 111113334443 57899999999888875
No 47
>PLN00142 sucrose synthase
Probab=99.79 E-value=2.2e-18 Score=160.39 Aligned_cols=174 Identities=10% Similarity=0.048 Sum_probs=120.1
Q ss_pred eecccccccccCCCCCCCCC---CCchh------hhhhhhhcCC--CCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCC
Q psy15362 15 VLQNGLATNQTNTKTATGEE---VPQSI------VITSRQQYGL--PEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVP 81 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~---~~~~~------~~~~R~~l~l--~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p 81 (200)
+||+|+|+..|.+....... +...+ ....++.+|+ +++..++++++|+ .|+++.+++++.++.+..+
T Consensus 524 VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~ 603 (815)
T PLN00142 524 IVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRE 603 (815)
T ss_pred EECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCC
Confidence 49999999987643211100 00000 0123456776 4456678888986 6999999999999877778
Q ss_pred CcEEEEEcCCc-c----cH------HHHHHHHHHcCCCCCcEEEeccC----CHHHHHhhcc-cccEEEeCCCCCC-chH
Q psy15362 82 NSILWLLKFPA-V----GE------ANIQATAQALGLDQHRILFSNVA----AKEEHVRRGQ-LADVCLDTPLCNG-HTT 144 (200)
Q Consensus 82 ~~~l~ivG~~~-~----~~------~~l~~~~~~~gl~~~rv~f~g~~----~~~~~~~~~~-~aDv~l~~~~~~~-g~~ 144 (200)
+++|+|+|++. + .. .+++++++++++. ++|+|+|.. +..++..+++ ++|+|+.||.+|+ |++
T Consensus 604 ~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~-~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLv 682 (815)
T PLN00142 604 LVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLK-GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLT 682 (815)
T ss_pred CcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCC-CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHH
Confidence 99999999641 1 11 3477889999998 999999854 3356766665 5799999998775 999
Q ss_pred HHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHh
Q psy15362 145 SMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRL 195 (200)
Q Consensus 145 ~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l 195 (200)
++||||||+|||+++-....+ ++ ..|..+++. .|.+++.+...++
T Consensus 683 vLEAMA~GlPVVATdvGG~~E-----IV-~dG~tG~LV~P~D~eaLA~aI~~l 729 (815)
T PLN00142 683 VVEAMTCGLPTFATCQGGPAE-----II-VDGVSGFHIDPYHGDEAANKIADF 729 (815)
T ss_pred HHHHHHcCCCEEEcCCCCHHH-----Hh-cCCCcEEEeCCCCHHHHHHHHHHH
Confidence 999999999999975432222 11 225566654 4777777666543
No 48
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.79 E-value=1.2e-18 Score=151.84 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=111.0
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHH----HHHHHHHHHCCCcEEEE
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTL----QMWVNVLKAVPNSILWL 87 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l----~a~~~i~~~~p~~~l~i 87 (200)
.+||||+|++.|.+.... +. .++.+..+++++|+. .|+.+.++ +++..+.++.|+++|+|
T Consensus 199 ~vipngvd~~~f~~~~~~------------~~--~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~i 264 (397)
T TIGR03087 199 TAFPNGVDADFFSPDRDY------------PN--PYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYI 264 (397)
T ss_pred EEeecccchhhcCCCccc------------cC--CCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 468999999887533110 01 123445566777774 68887766 56777888889999999
Q ss_pred EcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCC-CC-chHHHHHHHcCCCeeecCCCcchh
Q psy15362 88 LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NG-HTTSMDVLWTGTPVVTLPGETLAS 165 (200)
Q Consensus 88 vG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~-~~-g~~~lEAma~G~PVV~~~g~~~~~ 165 (200)
+|++ +. +.+ ++++.. ++|+|+|+++ ++..+|+.||+++.|+.+ +| +++++||||||+|||+++...
T Consensus 265 vG~g-~~-~~~----~~l~~~-~~V~~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~--- 332 (397)
T TIGR03087 265 VGAK-PS-PAV----RALAAL-PGVTVTGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAA--- 332 (397)
T ss_pred ECCC-Ch-HHH----HHhccC-CCeEEeeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCccc---
Confidence 9974 43 333 344555 7899999997 677899999999999864 34 789999999999999976311
Q ss_pred hhHHHHHhhcCCCcceecCHHHHHHHHHHhhcCCC
Q psy15362 166 RVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 166 r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d~e 200 (200)
.++....+..-++..|.+++++...++++|++
T Consensus 333 ---~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 333 ---EGIDALPGAELLVAADPADFAAAILALLANPA 364 (397)
T ss_pred ---ccccccCCcceEeCCCHHHHHHHHHHHHcCHH
Confidence 01111112223566899999999999988763
No 49
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.79 E-value=3.9e-18 Score=149.58 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=110.9
Q ss_pred CCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCC--cEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhh
Q psy15362 51 EDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN--SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRR 126 (200)
Q Consensus 51 ~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~--~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~ 126 (200)
++.+.++++||. .|+++.+++++.++.++.|+ .+++++|+ ++..+.+++++++++.. ++|+|+|+++.+++..+
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~-g~~~~~l~~~~~~~~~~-~~V~f~G~v~~~e~~~~ 305 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGG-GPLEDTLKELAESKPEN-ISVNFTGELSNSEVYKL 305 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeC-chHHHHHHHHHHhcCCC-ceEEEecCCChHHHHHH
Confidence 345667777775 69999999999999998874 56678886 46678899999888887 99999999999999999
Q ss_pred ccc--ccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcc-ee--cCHHHHHHHHHHhhcCCC
Q psy15362 127 GQL--ADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPEL-IA--RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 127 ~~~--aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~-ia--~~~~~yv~~a~~l~~d~e 200 (200)
|+. +|+|+.||..+| |++++||||||+|||+++-....+ ++. .|..++ +. +|.+++++...++++|++
T Consensus 306 ~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e-----~i~-~~~~G~l~~~~~~~~~la~~I~~ll~~~~ 379 (407)
T cd04946 306 YKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPE-----IVD-NGGNGLLLSKDPTPNELVSSLSKFIDNEE 379 (407)
T ss_pred HhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHH-----Hhc-CCCcEEEeCCCCCHHHHHHHHHHHHhCHH
Confidence 864 789999997776 999999999999999975432222 222 233333 33 367899999999888763
No 50
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.79 E-value=1.4e-18 Score=149.15 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=120.6
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCC--CCCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r--~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+||||++.+.+.+.. ..+.+...++++|| ..|+.+.+++++.++.++.|+++|.++|.+
T Consensus 183 ~~ip~g~~~~~~~~~~------------------~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g 244 (372)
T cd04949 183 YTIPVGSIDPLKLPAQ------------------FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYG 244 (372)
T ss_pred EEEcccccChhhcccc------------------hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 4688898877543210 01123345566666 479999999999999999999999999974
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCC-cchhhhHH
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGE-TLASRVAA 169 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~-~~~~r~~~ 169 (200)
.....++++++++++. ++|.|.|+. +++..+|+.||+++.||.+++ |++++|||+||+|||+++.. ...
T Consensus 245 -~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~----- 315 (372)
T cd04949 245 -DEEEKLKELIEELGLE-DYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPS----- 315 (372)
T ss_pred -chHHHHHHHHHHcCCc-ceEEEcCCC--CCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcH-----
Confidence 5667788889999997 999999965 578889999999999998765 99999999999999997522 111
Q ss_pred HHHhhcCCCcceec--CHHHHHHHHHHhhcCC
Q psy15362 170 SQLATLGCPELIAR--THKEYQDIAIRLGTDR 199 (200)
Q Consensus 170 ~~~~~~g~~~~ia~--~~~~yv~~a~~l~~d~ 199 (200)
.++ ..|..+++.+ |.+++++.+.++++|+
T Consensus 316 ~~v-~~~~~G~lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 316 EII-EDGENGYLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred HHc-ccCCCceEeCCCcHHHHHHHHHHHHcCH
Confidence 112 2245556665 8999999999998876
No 51
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.79 E-value=3.3e-18 Score=144.51 Aligned_cols=161 Identities=17% Similarity=0.158 Sum_probs=124.3
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+++||+|++.|.+.. ...+.+.+.++++|+. .|+++.+++++.++.++.|+.++.++|.
T Consensus 157 ~vi~~~~d~~~~~~~~-----------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~- 218 (355)
T cd03799 157 HVVHCGVDLERFPPRP-----------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGD- 218 (355)
T ss_pred EEEeCCcCHHHcCCcc-----------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEEC-
Confidence 4588999988764221 1123445666677764 6999999999999888889999999996
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCC------CC-chHHHHHHHcCCCeeecCCCcch
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC------NG-HTTSMDVLWTGTPVVTLPGETLA 164 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~------~~-g~~~lEAma~G~PVV~~~g~~~~ 164 (200)
++..+.+++.++++++. ++|+|.|+++.+++..+|+.||+++.|+.. ++ |++++|||+||+|||+++.....
T Consensus 219 ~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~ 297 (355)
T cd03799 219 GPLRDELEALIAELGLE-DRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIP 297 (355)
T ss_pred CccHHHHHHHHHHcCCC-CeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcc
Confidence 46678899999999997 999999999999999999999999999865 54 99999999999999997643322
Q ss_pred hhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 165 SRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 165 ~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
+ ++.. +..+++. .|.+++++....+++|+
T Consensus 298 ~-----~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 298 E-----LVED-GETGLLVPPGDPEALADAIERLLDDP 328 (355)
T ss_pred h-----hhhC-CCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 2 2222 3233433 38889999988888775
No 52
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.78 E-value=6e-18 Score=142.62 Aligned_cols=165 Identities=21% Similarity=0.192 Sum_probs=120.7
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+++||++...+.... . +++...+.+.++++++|+. .|+.+.+++++.++.++.|+.+|+++|.+
T Consensus 159 ~~i~~~~~~~~~~~~~------------~-~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~ 225 (366)
T cd03822 159 AVIPHGVPDPPAEPPE------------S-LKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGET 225 (366)
T ss_pred EEeCCCCcCcccCCch------------h-hHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccC
Confidence 4577888766543110 1 1334455666777777765 68999999999999998999999999974
Q ss_pred cccHHHHH----HHHHHcCCCCCcEEEecc-CCHHHHHhhcccccEEEeCCCCC--C-chHHHHHHHcCCCeeecCCCcc
Q psy15362 92 AVGEANIQ----ATAQALGLDQHRILFSNV-AAKEEHVRRGQLADVCLDTPLCN--G-HTTSMDVLWTGTPVVTLPGETL 163 (200)
Q Consensus 92 ~~~~~~l~----~~~~~~gl~~~rv~f~g~-~~~~~~~~~~~~aDv~l~~~~~~--~-g~~~lEAma~G~PVV~~~g~~~ 163 (200)
........ ++++++++. ++|+|.|. ++.+++..+|+.||+++.|+.++ + |.+++|||+||+|||+++...
T Consensus 226 ~~~~~~~~~~~~~~i~~~~~~-~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~- 303 (366)
T cd03822 226 HPDLERYRGEAYALAERLGLA-DRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH- 303 (366)
T ss_pred ccchhhhhhhhHhHHHhcCCC-CcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-
Confidence 33222222 238888997 99999987 99999999999999999999776 5 899999999999999976432
Q ss_pred hhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 164 ASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 164 ~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
... +.. +-..++. .|.+++++...++.+|+
T Consensus 304 ~~~-----i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 304 AEE-----VLD-GGTGLLVPPGDPAALAEAIRRLLADP 335 (366)
T ss_pred hhe-----eee-CCCcEEEcCCCHHHHHHHHHHHHcCh
Confidence 111 111 2223443 56889999998888875
No 53
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.78 E-value=4.1e-18 Score=143.29 Aligned_cols=162 Identities=18% Similarity=0.145 Sum_probs=120.6
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+++||+|.+.|.+.. .....+.+++ +.+..+++++|+. .|+.+.+++++.++.++ |+.+++++|.+
T Consensus 168 ~~~~~g~~~~~~~~~~---------~~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~ 236 (364)
T cd03814 168 RLWPRGVDTELFHPRR---------RDEALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDG 236 (364)
T ss_pred eecCCCccccccCccc---------ccHHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCC
Confidence 5688999888764321 1123455565 5566777888875 68999999999999887 99999999963
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHH
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAAS 170 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~ 170 (200)
+..+.++ +.. ++|.|.|+++.+++..+|+.||+++.|+..++ |++++|||+||+|||+++.....+.+
T Consensus 237 -~~~~~~~------~~~-~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i--- 305 (364)
T cd03814 237 -PARARLE------ARY-PNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIV--- 305 (364)
T ss_pred -chHHHHh------ccC-CcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhh---
Confidence 5444444 454 89999999999999999999999999987654 99999999999999998765443322
Q ss_pred HHhhcCCCccee--cCHHHHHHHHHHhhcCCC
Q psy15362 171 QLATLGCPELIA--RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 171 ~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~e 200 (200)
.. +-.+++. .+.+++++.+.++.+|++
T Consensus 306 --~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 306 --TD-GENGLLVEPGDAEAFAAALAALLADPE 334 (364)
T ss_pred --cC-CcceEEcCCCCHHHHHHHHHHHHcCHH
Confidence 12 2223333 567779999888888763
No 54
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.78 E-value=3.3e-18 Score=145.12 Aligned_cols=160 Identities=11% Similarity=0.102 Sum_probs=113.3
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+|+||+|...+.+ ....+..++++++.+ ++++||. .|+.+.+++++.++.. +.+|+++|++
T Consensus 167 ~~i~ngv~~~~~~~------------~~~~~~~~~~~~~~~-i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG~~ 230 (363)
T cd04955 167 TYIPYGADHVVSSE------------EDEILKKYGLEPGRY-YLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVGNA 230 (363)
T ss_pred eeeCCCcChhhcch------------hhhhHHhcCCCCCcE-EEEEecccccCCHHHHHHHHHhhcc---CceEEEEcCC
Confidence 78999999875431 123345567766544 4567775 6999999999987643 7999999974
Q ss_pred cccHHHHHHHHH-HcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCC-CC-chHHHHHHHcCCCeeecCCCcchhhhH
Q psy15362 92 AVGEANIQATAQ-ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NG-HTTSMDVLWTGTPVVTLPGETLASRVA 168 (200)
Q Consensus 92 ~~~~~~l~~~~~-~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~-~~-g~~~lEAma~G~PVV~~~g~~~~~r~~ 168 (200)
+....+++.++ .++.. ++|+|+|+++.+++..+|+.+|+++.|+.. ++ |++++|||+||+|||+++.....+-..
T Consensus 231 -~~~~~~~~~~~~~~~~~-~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~ 308 (363)
T cd04955 231 -DHNTPYGKLLKEKAAAD-PRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVLG 308 (363)
T ss_pred -CCcchHHHHHHHHhCCC-CcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccceeec
Confidence 34455655555 67887 999999999999999999999999998865 54 999999999999999975432221111
Q ss_pred HHHHhhcCCCcceecCHHHHHHHHHHhhcCC
Q psy15362 169 ASQLATLGCPELIARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 169 ~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d~ 199 (200)
-...+.+..+.+.+...++.+|+
T Consensus 309 --------~~g~~~~~~~~l~~~i~~l~~~~ 331 (363)
T cd04955 309 --------DKAIYFKVGDDLASLLEELEADP 331 (363)
T ss_pred --------CCeeEecCchHHHHHHHHHHhCH
Confidence 12233333333777777766664
No 55
>PLN02275 transferase, transferring glycosyl groups
Probab=99.78 E-value=7.7e-18 Score=145.89 Aligned_cols=134 Identities=15% Similarity=0.080 Sum_probs=103.4
Q ss_pred CEEEEEeCCC--CCCCHHHHHHHHHHH-----------------HHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEE
Q psy15362 53 AIVYCNFNQL--YKIDPSTLQMWVNVL-----------------KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRIL 113 (200)
Q Consensus 53 ~~v~~~~~r~--~K~~~~~l~a~~~i~-----------------~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~ 113 (200)
..++++++|. .|+++.+++++..+. ++.|+.+|+++|+ |+.+++++++++++|++ + ++
T Consensus 213 ~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~-G~~~~~l~~~~~~~~l~-~-v~ 289 (371)
T PLN02275 213 PALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGK-GPQKAMYEEKISRLNLR-H-VA 289 (371)
T ss_pred cEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeC-CCCHHHHHHHHHHcCCC-c-eE
Confidence 4566677875 699999999988764 2368999999997 47789999999999996 6 77
Q ss_pred Eec-cCCHHHHHhhcccccEEEeCC--C--CCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCHHHH
Q psy15362 114 FSN-VAAKEEHVRRGQLADVCLDTP--L--CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEY 188 (200)
Q Consensus 114 f~g-~~~~~~~~~~~~~aDv~l~~~--~--~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~y 188 (200)
|.+ +++.+++..+|+.||+++.++ . ++.|++++||||||+|||+++..... .++. .|..+++.++.+++
T Consensus 290 ~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~-----eiv~-~g~~G~lv~~~~~l 363 (371)
T PLN02275 290 FRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIG-----ELVK-DGKNGLLFSSSSEL 363 (371)
T ss_pred EEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChH-----HHcc-CCCCeEEECCHHHH
Confidence 654 799999999999999998643 2 23489999999999999997543221 2222 25556777788888
Q ss_pred HHHHHHh
Q psy15362 189 QDIAIRL 195 (200)
Q Consensus 189 v~~a~~l 195 (200)
++...+|
T Consensus 364 a~~i~~l 370 (371)
T PLN02275 364 ADQLLEL 370 (371)
T ss_pred HHHHHHh
Confidence 8877665
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.78 E-value=6.9e-18 Score=140.26 Aligned_cols=168 Identities=23% Similarity=0.271 Sum_probs=129.4
Q ss_pred CeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 13 GIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
-.+++||++...+.+.. ...+.....+.+.+.++++|+. .|+.+.+++++..+.++.|+.+++++|.
T Consensus 170 ~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~ 238 (374)
T cd03801 170 ITVIPNGVDTERFRPAP-----------RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGD 238 (374)
T ss_pred EEEecCcccccccCccc-----------hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeC
Confidence 45678888877653211 2334445556677788888875 6899999999999998889999999995
Q ss_pred CcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHH
Q psy15362 91 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAA 169 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~ 169 (200)
+.....+++.+++++.. ++|.|.|+++.+++..+|+.||+++.|+..++ |++++|||+||+|||+++...+.+...
T Consensus 239 -~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~- 315 (374)
T cd03801 239 -GPLREELEALAAELGLG-DRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVVE- 315 (374)
T ss_pred -cHHHHHHHHHHHHhCCC-cceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChhHHhc-
Confidence 46677888888888997 99999999999999999999999999987655 899999999999999987544332221
Q ss_pred HHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 170 SQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 170 ~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
. +-..++. .+.+++++...++.+|+
T Consensus 316 ----~-~~~g~~~~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 316 ----D-GETGLLVPPGDPEALAEAILRLLDDP 342 (374)
T ss_pred ----C-CcceEEeCCCCHHHHHHHHHHHHcCh
Confidence 1 2233443 34688988888887775
No 57
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.78 E-value=2.5e-18 Score=144.92 Aligned_cols=168 Identities=15% Similarity=0.097 Sum_probs=124.9
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+++||++.+.+.... . .. +.....+.+..+++++|+. .|+.+.+++++.++.+..++.+++++|.+
T Consensus 167 ~vi~~~~~~~~~~~~~---------~-~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~ 235 (365)
T cd03809 167 VVIPLGVDPRFRPPPA---------E-AE-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKR 235 (365)
T ss_pred EeeccccCccccCCCc---------h-HH-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 4688999887653211 0 11 3444555666777888875 58999999999999999889999999975
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHH
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAAS 170 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~ 170 (200)
+.........+++.+.. ++|+|+|+++.+++..+|+.||+++.|+.+++ |++++|||++|+|||+++...+.+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~-- 312 (365)
T cd03809 236 GWLNEELLARLRELGLG-DRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAG-- 312 (365)
T ss_pred ccccHHHHHHHHHcCCC-CeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCccceec--
Confidence 44444455555777887 99999999999999999999999999987665 899999999999999986544433221
Q ss_pred HHhhcCCCcceecCHHHHHHHHHHhhcCC
Q psy15362 171 QLATLGCPELIARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 171 ~~~~~g~~~~ia~~~~~yv~~a~~l~~d~ 199 (200)
..|. -+...+.+++++...++.+|+
T Consensus 313 ---~~~~-~~~~~~~~~~~~~i~~l~~~~ 337 (365)
T cd03809 313 ---DAAL-YFDPLDPEALAAAIERLLEDP 337 (365)
T ss_pred ---Ccee-eeCCCCHHHHHHHHHHHhcCH
Confidence 1111 123467889999888887775
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.77 E-value=5.9e-18 Score=140.36 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=110.5
Q ss_pred CCCEEEEEeCC--CCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcc
Q psy15362 51 EDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ 128 (200)
Q Consensus 51 ~~~~v~~~~~r--~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~ 128 (200)
.+...++++|+ ..|+.+.+++++.++.+..|+.+|+++|.+ .....++++++++++. ++|+|.|. .+++..+|+
T Consensus 176 ~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~-~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~ 251 (348)
T cd03820 176 LKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDG-PEREALEALIKELGLE-DRVILLGF--TKNIEEYYA 251 (348)
T ss_pred CCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCC-CCHHHHHHHHHHcCCC-CeEEEcCC--cchHHHHHH
Confidence 34455666665 468999999999999888999999999964 6677888899999997 99999998 478999999
Q ss_pred cccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCCC
Q psy15362 129 LADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 129 ~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~e 200 (200)
.||+++.|+.+++ |++++|||+||+|||+++....... +...+..+++. .|.+++++.+.++++||+
T Consensus 252 ~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 252 KASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE-----IIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred hCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHh-----hhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 9999999997765 9999999999999999753221111 11123233444 466899999999988764
No 59
>PHA01630 putative group 1 glycosyl transferase
Probab=99.77 E-value=8.4e-18 Score=144.02 Aligned_cols=157 Identities=8% Similarity=0.029 Sum_probs=107.3
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCC--CCCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r--~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+||||+|++.|.+.. + . ..+.+++++.++ ..|+++.+++++.++.++.++.+++++|++
T Consensus 121 ~vIpNGVd~~~f~~~~------~-----~-------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~ 182 (331)
T PHA01630 121 YVIPHNLNPRMFEYKP------K-----E-------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSN 182 (331)
T ss_pred EEECCCCCHHHcCCCc------c-----c-------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCc
Confidence 3689999998774321 0 0 123456666665 479999999999999988899999999953
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHH-
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAA- 169 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~- 169 (200)
....++ .++. + +.+.++.+++..+|+.||+|+.||.+++ |++++||||||+|||+++...+.+-+..
T Consensus 183 -~~~~~l------~~~~-~---~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~ 251 (331)
T PHA01630 183 -MLDPRL------FGLN-G---VKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSN 251 (331)
T ss_pred -ccchhh------cccc-c---eeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCC
Confidence 322221 1343 2 3567888999999999999999998775 9999999999999999865433221110
Q ss_pred --HHHhh------------cCCCcceecCHHHHHHHHHHhhcCC
Q psy15362 170 --SQLAT------------LGCPELIARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 170 --~~~~~------------~g~~~~ia~~~~~yv~~a~~l~~d~ 199 (200)
+++-. .+..-++..+.++..+.+++++.|+
T Consensus 252 ~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~ 295 (331)
T PHA01630 252 LDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANW 295 (331)
T ss_pred CceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCC
Confidence 01000 0111244457778888888877763
No 60
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.77 E-value=1.5e-17 Score=137.94 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=121.7
Q ss_pred CeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 13 GIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
-.+++||++.+.+.+... . .. .++.+.+.++++++|+. .|+.+.+++++.++.++.++.+|+++|.
T Consensus 161 ~~vi~~~~~~~~~~~~~~-------~--~~---~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~ 228 (353)
T cd03811 161 IEVIYNPIDIEEIRALAE-------E--PL---ELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGD 228 (353)
T ss_pred cEEecCCcChhhcCcccc-------h--hh---hcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcC
Confidence 356889998876543210 0 00 35667778888888886 5899999999999988889999999996
Q ss_pred CcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHH
Q psy15362 91 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAA 169 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~ 169 (200)
+...+.++++++++++. ++|+|.|+++ ++..+|+.||+++.|+.+++ |++++|||+||+|||+++.....+
T Consensus 229 -~~~~~~~~~~~~~~~~~-~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e---- 300 (353)
T cd03811 229 -GPLREELEALAKELGLA-DRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPRE---- 300 (353)
T ss_pred -CccHHHHHHHHHhcCCC-ccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHH----
Confidence 46677888999999997 9999999974 57788999999999997765 999999999999999976543322
Q ss_pred HHHhhcCCCccee--cCHHHH---HHHHHHhhcCC
Q psy15362 170 SQLATLGCPELIA--RTHKEY---QDIAIRLGTDR 199 (200)
Q Consensus 170 ~~~~~~g~~~~ia--~~~~~y---v~~a~~l~~d~ 199 (200)
++.. +...++. ++.+++ +.....+..|+
T Consensus 301 -~i~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 301 -ILED-GENGLLVPVGDEAALAAAALALLDLLLDP 333 (353)
T ss_pred -HhcC-CCceEEECCCCHHHHHHHHHHHHhccCCh
Confidence 1211 3334444 455566 45555555443
No 61
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.76 E-value=1.3e-17 Score=148.37 Aligned_cols=178 Identities=17% Similarity=0.021 Sum_probs=120.3
Q ss_pred eeecccccccccCCCCCCCCC---------CCchhhhhhhhhcCCC--CCCEEEEEeCCC--CCCCHHHHHHHHHHHHHC
Q psy15362 14 IVLQNGLATNQTNTKTATGEE---------VPQSIVITSRQQYGLP--EDAIVYCNFNQL--YKIDPSTLQMWVNVLKAV 80 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~---------~~~~~~~~~R~~l~l~--~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~ 80 (200)
..|+||+|++.|.+....... .....+..+|+++|++ ++.++++++||+ .|+.+.+++++.++.++
T Consensus 246 ~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~- 324 (476)
T cd03791 246 SGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL- 324 (476)
T ss_pred EEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc-
Confidence 468999999988654321100 0112245688999996 677888999986 69999999999988764
Q ss_pred CCcEEEEEcCCcc-cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeec
Q psy15362 81 PNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 81 p~~~l~ivG~~~~-~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~ 158 (200)
+.+|+++|.+.. ..+.++++++++ . ++++|.+..+.++...+|+.||+++.||.+++ |++.+|||+||+|||++
T Consensus 325 -~~~lvi~G~g~~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~ 400 (476)
T cd03791 325 -GGQLVILGSGDPEYEEALRELAARY--P-GRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVR 400 (476)
T ss_pred -CcEEEEEecCCHHHHHHHHHHHHhC--C-CcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEEC
Confidence 399999997422 235667777765 3 78887766666777789999999999998775 99999999999999987
Q ss_pred CCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhh
Q psy15362 159 PGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLG 196 (200)
Q Consensus 159 ~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~ 196 (200)
+...+.+-+..+.-....-.+++. .|.+++.+...++.
T Consensus 401 ~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l 440 (476)
T cd03791 401 ATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRAL 440 (476)
T ss_pred cCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHH
Confidence 543332211100000000023333 46777777666554
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.76 E-value=1.1e-17 Score=141.90 Aligned_cols=161 Identities=19% Similarity=0.159 Sum_probs=117.0
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEE--EeCCC--CCCCHHHHHHHHHHHHH-CCCcEEEEE
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYC--NFNQL--YKIDPSTLQMWVNVLKA-VPNSILWLL 88 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~--~~~r~--~K~~~~~l~a~~~i~~~-~p~~~l~iv 88 (200)
.+++||+|++.|.+. .....|..++++++..++. +.+.. .|+++.+++++..+.++ .++.+++++
T Consensus 162 ~vi~ngi~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~ 231 (365)
T cd03825 162 EVIPNGIDTTIFRPR----------DKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVF 231 (365)
T ss_pred EEeCCCCcccccCCC----------cHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEe
Confidence 468899988866321 1245677888888765543 33433 79999999999987665 689999999
Q ss_pred cCCcccHHHHHHHHHHcCCCCCcEEEeccCC-HHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhh
Q psy15362 89 KFPAVGEANIQATAQALGLDQHRILFSNVAA-KEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASR 166 (200)
Q Consensus 89 G~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~-~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r 166 (200)
|.+ ..... .++. ++|+|+|+++ .+++..+|+.||+++.||.+++ |++++|||+||+|||+++...+.+.
T Consensus 232 G~~-~~~~~-------~~~~-~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~ 302 (365)
T cd03825 232 GAS-DPEIP-------PDLP-FPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDI 302 (365)
T ss_pred CCC-chhhh-------ccCC-CceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhh
Confidence 964 22111 1565 8999999999 7889999999999999987665 9999999999999999764433221
Q ss_pred hHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 167 VAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 167 ~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
+. . +..+++. .+.+++++...++.+|+
T Consensus 303 ~~-----~-~~~g~~~~~~~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 303 VD-----H-GVTGYLAKPGDPEDLAEGIEWLLADP 331 (365)
T ss_pred ee-----C-CCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 11 1 2233443 36888888888888775
No 63
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.75 E-value=3.9e-18 Score=151.96 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=118.4
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCC----cEEEE
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN----SILWL 87 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~----~~l~i 87 (200)
.++|||||++.|.+....+ ..+...|+..++.++..++++++|+ .|+++.+++|+.+++++.|+ ++|++
T Consensus 230 ~vip~GID~~~f~~~~~~~-----~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~ 304 (460)
T cd03788 230 GAFPIGIDPDAFRKLAASP-----EVQERAAELRERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQ 304 (460)
T ss_pred EEEeCeEcHHHHHHHhcCc-----hhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEE
Confidence 4689999999886432111 1123344445666778888999986 69999999999999999997 67888
Q ss_pred EcCCc----ccHHHHH----HHHHHcC-------CCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHc
Q psy15362 88 LKFPA----VGEANIQ----ATAQALG-------LDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWT 151 (200)
Q Consensus 88 vG~~~----~~~~~l~----~~~~~~g-------l~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~ 151 (200)
+|.+. +..+.++ +++++.+ .. +.++|.|.++.+++..+|+.||+|+.||..+| |++++|||||
T Consensus 305 vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~-~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~ 383 (460)
T cd03788 305 IAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWT-PVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVAC 383 (460)
T ss_pred EccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCce-eEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEE
Confidence 87421 2223343 4443332 22 33455678899999999999999999998776 9999999999
Q ss_pred CCC----eeecCCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 152 GTP----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 152 G~P----VV~~~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
|+| ||++...... .. +...++. .|.+++++...++++++
T Consensus 384 g~p~~g~vV~S~~~G~~--------~~-~~~g~lv~p~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 384 QDDDPGVLILSEFAGAA--------EE-LSGALLVNPYDIDEVADAIHRALTMP 428 (460)
T ss_pred ecCCCceEEEeccccch--------hh-cCCCEEECCCCHHHHHHHHHHHHcCC
Confidence 999 7665321110 01 2334444 48888888888887765
No 64
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.75 E-value=4.6e-17 Score=135.93 Aligned_cols=169 Identities=23% Similarity=0.254 Sum_probs=128.8
Q ss_pred CeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 13 GIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
-.+++||+|.+.|.+.. .... ..++.+.+.+.++++|+. .|+.+.+++++..+.++.|+.+++++|.
T Consensus 173 ~~~i~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~ 241 (377)
T cd03798 173 VTVIPNGVDTERFSPAD---------RAEA--RKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGD 241 (377)
T ss_pred eEEcCCCcCcccCCCcc---------hHHH--HhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 35688898887654221 0011 344556677788888875 6899999999999988889999999996
Q ss_pred CcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHH
Q psy15362 91 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAA 169 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~ 169 (200)
+.....+++.++++++. ++|.+.|+++.+++..+|+.||+++.|+..++ |++++|||+||+|||+++.....+.
T Consensus 242 -~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~--- 316 (377)
T cd03798 242 -GPLREALEALAAELGLE-DRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPEI--- 316 (377)
T ss_pred -CcchHHHHHHHHhcCCc-ceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChHHH---
Confidence 45667888999989997 99999999999999999999999999987654 8999999999999999765433221
Q ss_pred HHHhhcCCCccee--cCHHHHHHHHHHhhcCCC
Q psy15362 170 SQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 170 ~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~e 200 (200)
+.. +..+++. .|.+++++...++.+|++
T Consensus 317 --~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 317 --ITD-GENGLLVPPGDPEALAEAILRLLADPW 346 (377)
T ss_pred --hcC-CcceeEECCCCHHHHHHHHHHHhcCcH
Confidence 211 2223333 588889998888887753
No 65
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.74 E-value=5.7e-17 Score=136.25 Aligned_cols=151 Identities=12% Similarity=-0.004 Sum_probs=109.2
Q ss_pred CeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCC--CCCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 13 GIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r--~~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
-.+|+||+|++.|.+. +.+...++++|| ..|+++.+++++.+ ++.+|+++|.
T Consensus 152 ~~vi~ngvd~~~~~~~---------------------~~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~i~G~ 205 (335)
T cd03802 152 VATVHNGIDLDDYPFR---------------------GPKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLKLAGP 205 (335)
T ss_pred cEEecCCcChhhCCCC---------------------CCCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEEEEeC
Confidence 4568999998876421 112233445555 57999988887542 5799999997
Q ss_pred CcccHHHHHHHHHHcC-CCCCcEEEeccCCHHHHHhhcccccEEEeCCC--CCCchHHHHHHHcCCCeeecCCCcchhhh
Q psy15362 91 PAVGEANIQATAQALG-LDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--CNGHTTSMDVLWTGTPVVTLPGETLASRV 167 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~g-l~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~--~~~g~~~lEAma~G~PVV~~~g~~~~~r~ 167 (200)
+ ...+.+....++.. +. ++|+|+|+++.+++..+|+.+|+++.|+. +++|++++||||||+|||+++.....+-+
T Consensus 206 ~-~~~~~~~~~~~~~~~~~-~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i 283 (335)
T cd03802 206 V-SDPDYFYREIAPELLDG-PDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVV 283 (335)
T ss_pred C-CCHHHHHHHHHHhcccC-CcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhhe
Confidence 4 55566666666554 55 89999999999999999999999999985 34599999999999999998654332211
Q ss_pred HHHHHhhcCCCcceecCHHHHHHHHHHhhc
Q psy15362 168 AASQLATLGCPELIARTHKEYQDIAIRLGT 197 (200)
Q Consensus 168 ~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~ 197 (200)
. .|..+++.++.+++++...++.+
T Consensus 284 ~------~~~~g~l~~~~~~l~~~l~~l~~ 307 (335)
T cd03802 284 E------DGVTGFLVDSVEELAAAVARADR 307 (335)
T ss_pred e------CCCcEEEeCCHHHHHHHHHHHhc
Confidence 1 24456677778888887776644
No 66
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.74 E-value=1.1e-17 Score=148.76 Aligned_cols=171 Identities=18% Similarity=0.178 Sum_probs=116.3
Q ss_pred eecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCC----cEEEEE
Q psy15362 15 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN----SILWLL 88 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~----~~l~iv 88 (200)
++|||||++.|.+....++ .......+|++++ +..++++++|+ .|+++.+++|+.+++++.|+ ++|+++
T Consensus 226 viP~GID~~~f~~~~~~~~--~~~~~~~lr~~~~---~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v 300 (456)
T TIGR02400 226 AFPIGIDVDRFAEQAKKPS--VQKRIAELRESLK---GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQI 300 (456)
T ss_pred EecCcCCHHHHHHHhcChh--HHHHHHHHHHHcC---CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEE
Confidence 6999999999865431110 1112235677763 66788899986 69999999999999999996 567777
Q ss_pred cCC----cccHHHHHHHHHHc--------CCC--CCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCC
Q psy15362 89 KFP----AVGEANIQATAQAL--------GLD--QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGT 153 (200)
Q Consensus 89 G~~----~~~~~~l~~~~~~~--------gl~--~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~ 153 (200)
|.+ ++..+.+++.++++ +.. ..-+.|.+.++.+++.++|++||+||.||..+| |++++||||||+
T Consensus 301 ~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~ 380 (456)
T TIGR02400 301 AVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD 380 (456)
T ss_pred ecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcC
Confidence 531 23345566666554 111 023445667889999999999999999998776 999999999999
Q ss_pred C----eeecCCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 154 P----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 154 P----VV~~~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
| ||++...... ..+ + ..++. .|.+++++...++++++
T Consensus 381 P~~g~vVlS~~~G~~-----~~l---~-~gllVnP~d~~~lA~aI~~aL~~~ 423 (456)
T TIGR02400 381 PKDGVLILSEFAGAA-----QEL---N-GALLVNPYDIDGMADAIARALTMP 423 (456)
T ss_pred CCCceEEEeCCCCCh-----HHh---C-CcEEECCCCHHHHHHHHHHHHcCC
Confidence 9 7765422111 111 1 23333 57777777777766644
No 67
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.73 E-value=7.8e-17 Score=135.57 Aligned_cols=167 Identities=17% Similarity=0.122 Sum_probs=122.8
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+++||++...+.+... ... +..+..+.+.++++++|+. .|+.+.+++++.++.+. |+.+++++|.
T Consensus 191 ~~i~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~- 258 (394)
T cd03794 191 SVIPNGVDLELFKPPPA---------DES-LRKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGD- 258 (394)
T ss_pred EEcCCCCCHHHcCCccc---------hhh-hhhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCC-
Confidence 45788888765532210 011 4455566777888888875 68999999999998877 8999999996
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC------chHHHHHHHcCCCeeecCCCcchh
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG------HTTSMDVLWTGTPVVTLPGETLAS 165 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~------g~~~lEAma~G~PVV~~~g~~~~~ 165 (200)
+...+.+++++...++ ++|.|+|+++.+++..+|+.||+++.|+..++ +++++|||+||+|||+++......
T Consensus 259 ~~~~~~~~~~~~~~~~--~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~ 336 (394)
T cd03794 259 GPEKEELKELAKALGL--DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE 336 (394)
T ss_pred cccHHHHHHHHHHcCC--CcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh
Confidence 4667778887777666 67999999999999999999999999876442 567999999999999986543322
Q ss_pred hhHHHHHhhcCCCccee-cCHHHHHHHHHHhhcCC
Q psy15362 166 RVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 166 r~~~~~~~~~g~~~~ia-~~~~~yv~~a~~l~~d~ 199 (200)
-.. ..+..-++. .|.+++++...+++.|+
T Consensus 337 ~~~-----~~~~g~~~~~~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 337 LVE-----EAGAGLVVPPGDPEALAAAILELLDDP 366 (394)
T ss_pred hhc-----cCCcceEeCCCCHHHHHHHHHHHHhCh
Confidence 111 111112333 47889999888888765
No 68
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.73 E-value=9.7e-17 Score=134.50 Aligned_cols=158 Identities=17% Similarity=0.114 Sum_probs=115.0
Q ss_pred CeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 13 GIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
-.+++||+|.+.+.+.. . +.+.+.++++++|+. .|+.+.+++++.++.+ ++.+|+++|.
T Consensus 168 ~~vi~n~~~~~~~~~~~------------~-----~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~ 228 (359)
T cd03823 168 ISVIRNGIDLDRAKRPR------------R-----APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGN 228 (359)
T ss_pred eEEecCCcChhhccccc------------c-----CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcC
Confidence 35688888887643211 0 345666778888875 6889999999998876 8999999996
Q ss_pred CcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCC-CC-CchHHHHHHHcCCCeeecCCCcchhhhH
Q psy15362 91 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CN-GHTTSMDVLWTGTPVVTLPGETLASRVA 168 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~-~~-~g~~~lEAma~G~PVV~~~g~~~~~r~~ 168 (200)
+ ......+... +.. ++|+|+|+++.+++..+|+.||+++.|+. .+ +|++++|||+||+|||+++.....+
T Consensus 229 ~-~~~~~~~~~~---~~~-~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e--- 300 (359)
T cd03823 229 G-LELEEESYEL---EGD-PRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMAE--- 300 (359)
T ss_pred c-hhhhHHHHhh---cCC-CeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHHH---
Confidence 4 3333333222 565 89999999999999999999999999985 34 5899999999999999987543322
Q ss_pred HHHHhhcCCCccee--cCHHHHHHHHHHhhcCCC
Q psy15362 169 ASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 169 ~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~e 200 (200)
++.. +..+++. .|.+++++...++.+|++
T Consensus 301 --~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 301 --LVRD-GVNGLLFPPGDAEDLAAALERLIDDPD 331 (359)
T ss_pred --HhcC-CCcEEEECCCCHHHHHHHHHHHHhChH
Confidence 2222 3234443 457899999888887763
No 69
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.73 E-value=7.4e-17 Score=137.59 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=106.2
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCC--CCCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAVPNSILWLLKFP 91 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r--~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~ 91 (200)
.+|+||+|++.|.+.. +.+ ..++++|| ..|+++.+++++.++ | .+|+++|++
T Consensus 177 ~vi~~~~d~~~~~~~~--------------------~~~-~~il~~G~~~~~K~~~~li~a~~~~----~-~~l~ivG~g 230 (351)
T cd03804 177 TVIYPPVDTDRFTPAE--------------------EKE-DYYLSVGRLVPYKRIDLAIEAFNKL----G-KRLVVIGDG 230 (351)
T ss_pred EEECCCCCHhhcCcCC--------------------CCC-CEEEEEEcCccccChHHHHHHHHHC----C-CcEEEEECC
Confidence 5688888887653211 111 22445565 469999999998753 5 889999974
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhHHHH
Q psy15362 92 AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQ 171 (200)
Q Consensus 92 ~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~ 171 (200)
+..+.+++ +.. ++|+|+|+++.+++..+|+.||+++.|+.++.|++++|||+||+|||+++.....+-
T Consensus 231 -~~~~~l~~-----~~~-~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e~----- 298 (351)
T cd03804 231 -PELDRLRA-----KAG-PNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGGALET----- 298 (351)
T ss_pred -hhHHHHHh-----hcC-CCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCCCcce-----
Confidence 55555554 455 899999999999999999999999999884459999999999999999754322221
Q ss_pred HhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 172 LATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 172 ~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
+.. +..+++. +|.+++++....+++|+
T Consensus 299 i~~-~~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 299 VID-GVTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred eeC-CCCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 111 2233433 67888999998988887
No 70
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.71 E-value=1.8e-16 Score=131.91 Aligned_cols=140 Identities=21% Similarity=0.183 Sum_probs=106.7
Q ss_pred CCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHH-HHHHcCCCCCcEEEeccCCHHHHHhh
Q psy15362 50 PEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQA-TAQALGLDQHRILFSNVAAKEEHVRR 126 (200)
Q Consensus 50 ~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~-~~~~~gl~~~rv~f~g~~~~~~~~~~ 126 (200)
+.+.+.++++|+. .|+.+.+++++..+.+..|+.+|+++|.+ ......+. ++.+.+.. ++|+|.|+. +++..+
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~-~~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~ 260 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDG-DEENPAAILEIEKLGLE-GRVEFLGFR--DDVPEL 260 (359)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCC-CcchhhHHHHHHhcCCc-ceEEEeecc--ccHHHH
Confidence 4456778888875 68999999999999888899999999974 33333333 36677776 999999994 678889
Q ss_pred cccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhcCC
Q psy15362 127 GQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~d~ 199 (200)
|+.||+++.|+.+++ |++++|||+||+|||+++.....+ ++.. +-.+++. +|.+++++...++..|+
T Consensus 261 ~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~-----~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 261 LAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCRE-----AVID-GVNGFLVPPGDAEALADAIERLIEDP 330 (359)
T ss_pred HHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchh-----hhhc-CcceEEECCCCHHHHHHHHHHHHhCH
Confidence 999999999987665 999999999999999986543322 2221 3334444 46888998888887775
No 71
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.69 E-value=6.2e-16 Score=135.95 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=106.4
Q ss_pred hhhhhhcCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccH-HHHHHHHHHcCCCC----------
Q psy15362 41 ITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGE-ANIQATAQALGLDQ---------- 109 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~-~~l~~~~~~~gl~~---------- 109 (200)
...|++++ + +..++++.++..|..+.+++++.++.++.|+.+|+|+|++ +.+ +.++++++++|++.
T Consensus 223 ~~~r~~~~-~-~~~vil~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g-~~r~~~l~~~~~~~gl~~~~~~~~~~~~ 299 (425)
T PRK05749 223 ATLRRQLA-P-NRPVWIAASTHEGEEELVLDAHRALLKQFPNLLLILVPRH-PERFKEVEELLKKAGLSYVRRSQGEPPS 299 (425)
T ss_pred HHHHHHhc-C-CCcEEEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCC-hhhHHHHHHHHHhCCCcEEEccCCCCCC
Confidence 45677787 4 4455566777778788899999999888999999999974 554 78999999999840
Q ss_pred --CcEEEeccCCHHHHHhhcccccEEEe-CCC-CCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCH
Q psy15362 110 --HRILFSNVAAKEEHVRRGQLADVCLD-TPL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTH 185 (200)
Q Consensus 110 --~rv~f~g~~~~~~~~~~~~~aDv~l~-~~~-~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~ 185 (200)
.+|++.+. ..++..+|+.||+++. +|. .++|.+++|||+||+|||+.+...-..... ..+...|. -+...|.
T Consensus 300 ~~~~v~l~~~--~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~-~~~~~~g~-~~~~~d~ 375 (425)
T PRK05749 300 ADTDVLLGDT--MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIF-ERLLQAGA-AIQVEDA 375 (425)
T ss_pred CCCcEEEEec--HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHH-HHHHHCCC-eEEECCH
Confidence 13343333 2689999999999644 454 346899999999999999864211111111 11112221 1224788
Q ss_pred HHHHHHHHHhhcCCC
Q psy15362 186 KEYQDIAIRLGTDRD 200 (200)
Q Consensus 186 ~~yv~~a~~l~~d~e 200 (200)
+++.+....|++||+
T Consensus 376 ~~La~~l~~ll~~~~ 390 (425)
T PRK05749 376 EDLAKAVTYLLTDPD 390 (425)
T ss_pred HHHHHHHHHHhcCHH
Confidence 999999988888763
No 72
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.66 E-value=3.5e-16 Score=137.34 Aligned_cols=119 Identities=10% Similarity=0.033 Sum_probs=84.6
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCC----CCCCCHHHHHHHHHHHHHCCCcEEEEEc
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQ----LYKIDPSTLQMWVNVLKAVPNSILWLLK 89 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r----~~K~~~~~l~a~~~i~~~~p~~~l~ivG 89 (200)
.+|+||+|++.+...+.. ...| .+++..+++++++ ..|+.+.+++++.++ .++.+|+++|
T Consensus 215 ~vI~NGid~~~~~~~~~~---------~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG 278 (405)
T PRK10125 215 RIINNGIDMATEAILAEL---------PPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFG 278 (405)
T ss_pred EEeCCCcCcccccccccc---------cccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEc
Confidence 469999998643211100 1111 1344555666665 247788899998865 3579999999
Q ss_pred CCcccHHHHHHHHHHcCCCCCcEEEeccCC-HHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCC
Q psy15362 90 FPAVGEANIQATAQALGLDQHRILFSNVAA-KEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGE 161 (200)
Q Consensus 90 ~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~-~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~ 161 (200)
.+ +... . +++.++|+.. .+++..+|+.||+|+.||.+++ |++++||||||+|||+++-.
T Consensus 279 ~g-~~~~-----------~-~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~g 339 (405)
T PRK10125 279 KF-SPFT-----------A-GNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSD 339 (405)
T ss_pred CC-Cccc-----------c-cceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCC
Confidence 64 2111 2 5689999874 5789999999999999998776 99999999999999998643
No 73
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.64 E-value=5.6e-15 Score=128.50 Aligned_cols=147 Identities=13% Similarity=0.044 Sum_probs=100.3
Q ss_pred hhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHH----HCCCcE-EEEEcCCcccHHHHHHHHHHcCCCCCcEE
Q psy15362 41 ITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLK----AVPNSI-LWLLKFPAVGEANIQATAQALGLDQHRIL 113 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~----~~p~~~-l~ivG~~~~~~~~l~~~~~~~gl~~~rv~ 113 (200)
...|+++|++++..+++++|+. .|+...+++++.+++. ..++.+ ++++|. +. .+++.++++... ++|+
T Consensus 194 ~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~-~~---~~~~~L~~~~~~-~~v~ 268 (382)
T PLN02605 194 DELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGR-NK---KLQSKLESRDWK-IPVK 268 (382)
T ss_pred HHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECC-CH---HHHHHHHhhccc-CCeE
Confidence 5688999999888887777764 5777888888876541 246676 455553 32 223333333334 6799
Q ss_pred EeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCHHHHHHHHH
Q psy15362 114 FSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAI 193 (200)
Q Consensus 114 f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~ 193 (200)
|+|+++ ++..+|++||+++.++ ||.+++|||+||+|||+++--...+......+...|.. +...+.+++.+...
T Consensus 269 ~~G~~~--~~~~l~~aaDv~V~~~---g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g-~~~~~~~~la~~i~ 342 (382)
T PLN02605 269 VRGFVT--NMEEWMGACDCIITKA---GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFG-AFSESPKEIARIVA 342 (382)
T ss_pred EEeccc--cHHHHHHhCCEEEECC---CcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCce-eecCCHHHHHHHHH
Confidence 999995 7889999999999743 67899999999999999752111111222333334543 34488889988888
Q ss_pred HhhcC
Q psy15362 194 RLGTD 198 (200)
Q Consensus 194 ~l~~d 198 (200)
+++.|
T Consensus 343 ~ll~~ 347 (382)
T PLN02605 343 EWFGD 347 (382)
T ss_pred HHHcC
Confidence 88776
No 74
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.60 E-value=8.8e-15 Score=126.82 Aligned_cols=157 Identities=15% Similarity=0.046 Sum_probs=102.2
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCCC-CCCHHHHHHHHHHHHHCCCcEEEEEcCCc
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLY-KIDPSTLQMWVNVLKAVPNSILWLLKFPA 92 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~~-K~~~~~l~a~~~i~~~~p~~~l~ivG~~~ 92 (200)
.+|+||+|.+.|.+..... ...+.. ...+.++++++|+.. |... +.+.++.+..|+.+|+++|.+
T Consensus 176 ~~i~ngvd~~~f~~~~~~~--------~~~~~~--~~~~~~~i~y~G~l~~~~d~---~ll~~la~~~p~~~~vliG~~- 241 (373)
T cd04950 176 VLVPNGVDYEHFAAARDPP--------PPPADL--AALPRPVIGYYGAIAEWLDL---ELLEALAKARPDWSFVLIGPV- 241 (373)
T ss_pred EEcccccCHHHhhcccccC--------CChhHH--hcCCCCEEEEEeccccccCH---HHHHHHHHHCCCCEEEEECCC-
Confidence 4599999999885432111 001111 123456778888765 3332 344455567899999999964
Q ss_pred ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCC------CCchHHHHHHHcCCCeeecCCCcchhh
Q psy15362 93 VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC------NGHTTSMDVLWTGTPVVTLPGETLASR 166 (200)
Q Consensus 93 ~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~------~~g~~~lEAma~G~PVV~~~g~~~~~r 166 (200)
.......+ ... . ++|+|+|++|++++..+|+.+|+++.|+.. ..++.++|+||||+|||+++...+
T Consensus 242 ~~~~~~~~---~~~-~-~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~--- 313 (373)
T cd04950 242 DVSIDPSA---LLR-L-PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEV--- 313 (373)
T ss_pred cCccChhH---hcc-C-CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHH---
Confidence 21111111 112 3 789999999999999999999999998742 237889999999999999763221
Q ss_pred hHHHHHhhcCCCcceecCHHHHHHHHHHhhc
Q psy15362 167 VAASQLATLGCPELIARTHKEYQDIAIRLGT 197 (200)
Q Consensus 167 ~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~ 197 (200)
....+..-++.+|.+++++...+++.
T Consensus 314 -----~~~~~~~~~~~~d~~~~~~ai~~~l~ 339 (373)
T cd04950 314 -----RRYEDEVVLIADDPEEFVAAIEKALL 339 (373)
T ss_pred -----HhhcCcEEEeCCCHHHHHHHHHHHHh
Confidence 11112111345689999998888543
No 75
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.59 E-value=3.1e-15 Score=110.99 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=87.9
Q ss_pred CEEEEEeCCCC--CCCHHHHH-HHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccc
Q psy15362 53 AIVYCNFNQLY--KIDPSTLQ-MWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 129 (200)
Q Consensus 53 ~~v~~~~~r~~--K~~~~~l~-a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~ 129 (200)
.+++++.++.. |+.+.+++ +|.++.++.|+++|.++|.. +. +++++ .. ++|+|.|++ +++..+++.
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~-~~--~l~~~-----~~-~~v~~~g~~--~e~~~~l~~ 70 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG-PD--ELKRL-----RR-PNVRFHGFV--EELPEILAA 70 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES-S---HHCCH-----HH-CTEEEE-S---HHHHHHHHC
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC-HH--HHHHh-----cC-CCEEEcCCH--HHHHHHHHh
Confidence 46788888764 88899999 99999999999999999963 33 35444 22 789999999 589999999
Q ss_pred ccEEEeCCCC-C-CchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCHHHHHHHHHHhhcC
Q psy15362 130 ADVCLDTPLC-N-GHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 198 (200)
Q Consensus 130 aDv~l~~~~~-~-~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d 198 (200)
||+.+.|+.. + .+++++|+|++|+|||+++. .+ ..+....+..-++.++.+++++.+.+|++|
T Consensus 71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~-----~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GA-----EGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HC-----HCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-ch-----hhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 9999999853 3 47899999999999999754 11 112222344446678999999999999876
No 76
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.57 E-value=6.1e-14 Score=121.46 Aligned_cols=145 Identities=12% Similarity=0.037 Sum_probs=97.1
Q ss_pred hhhhhhcCCCCCC-EEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCCc-ccHHHHHHHHHHcCCCCCcEEEec
Q psy15362 41 ITSRQQYGLPEDA-IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSN 116 (200)
Q Consensus 41 ~~~R~~l~l~~~~-~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~-~~~~~l~~~~~~~gl~~~rv~f~g 116 (200)
...|++++++++. +++.+.|+. .|+...+++++. +.|+.+++++|+++ ..++.+++++++++ ++|+|+|
T Consensus 190 ~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~----~~~~~~~viv~G~~~~~~~~l~~~~~~~~---~~v~~~g 262 (380)
T PRK13609 190 DIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLM----SVPDLQVVVVCGKNEALKQSLEDLQETNP---DALKVFG 262 (380)
T ss_pred HHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHh----hCCCcEEEEEeCCCHHHHHHHHHHHhcCC---CcEEEEe
Confidence 3578899998765 445555554 366666666553 34889998875432 34567777776543 6899999
Q ss_pred cCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCC-CcchhhhHHHHHhhcCCCcceecCHHHHHHHHHHh
Q psy15362 117 VAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG-ETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 195 (200)
Q Consensus 117 ~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g-~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l 195 (200)
+++ ++..+|+.||+++. ..||++++|||+||+|||++.. ... ......++...|. .+...+.+++.+...++
T Consensus 263 ~~~--~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~-~~~n~~~~~~~G~-~~~~~~~~~l~~~i~~l 335 (380)
T PRK13609 263 YVE--NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQ-EKENAMYFERKGA-AVVIRDDEEVFAKTEAL 335 (380)
T ss_pred chh--hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCc-chHHHHHHHhCCc-EEEECCHHHHHHHHHHH
Confidence 994 57788999999984 3468999999999999998631 111 1111122333343 23457888888888888
Q ss_pred hcCC
Q psy15362 196 GTDR 199 (200)
Q Consensus 196 ~~d~ 199 (200)
++|+
T Consensus 336 l~~~ 339 (380)
T PRK13609 336 LQDD 339 (380)
T ss_pred HCCH
Confidence 8775
No 77
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.56 E-value=1.2e-14 Score=137.00 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=111.4
Q ss_pred eecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcE----EEEE
Q psy15362 15 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSI----LWLL 88 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~----l~iv 88 (200)
+||||||++.|.+....++ -......+|+.++ +..++++++|+ .|+++..++||.++++++|+.+ |+.+
T Consensus 246 viP~GID~~~f~~~~~~~~--~~~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqi 320 (797)
T PLN03063 246 VFPIGIDPERFINTCELPE--VKQHMKELKRFFA---GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQI 320 (797)
T ss_pred EEecccCHHHHHHHhcChh--HHHHHHHHHHhcC---CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEE
Confidence 6999999998754321110 0111234555554 56677889986 6999999999999999999863 4434
Q ss_pred cCC----cccHHHHHHHHHHcC--CCCCc--------EE-EeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcC
Q psy15362 89 KFP----AVGEANIQATAQALG--LDQHR--------IL-FSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTG 152 (200)
Q Consensus 89 G~~----~~~~~~l~~~~~~~g--l~~~r--------v~-f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G 152 (200)
+.+ ++..+.+++.+++++ +. ++ |+ +.+.++.+++..+|+.||+||.||.++| |++++||||||
T Consensus 321 a~psr~~~~~y~~l~~~v~~l~g~In-~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g 399 (797)
T PLN03063 321 AVPTRNDVPEYQKLKSQVHELVGRIN-GRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQ 399 (797)
T ss_pred ecCCCCchHHHHHHHHHHHHHHHHhh-cccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheee
Confidence 321 234456777777664 43 32 23 3347889999999999999999998776 99999999999
Q ss_pred CC----eeecCCCcchhhhHHHHHhhcCCCccee--cCHHHHHHHHHHhhc
Q psy15362 153 TP----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT 197 (200)
Q Consensus 153 ~P----VV~~~g~~~~~r~~~~~~~~~g~~~~ia--~~~~~yv~~a~~l~~ 197 (200)
+| +|.+.-..... .+|...++. .|.+++++...++++
T Consensus 400 ~p~~gvlVlSe~~G~~~--------~l~~~allVnP~D~~~lA~AI~~aL~ 442 (797)
T PLN03063 400 KAKKGVLVLSEFAGAGQ--------SLGAGALLVNPWNITEVSSAIKEALN 442 (797)
T ss_pred cCCCCCEEeeCCcCchh--------hhcCCeEEECCCCHHHHHHHHHHHHh
Confidence 98 66653211111 122233333 467777766666655
No 78
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.56 E-value=1.2e-13 Score=120.73 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=109.3
Q ss_pred eeEeeeCeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCC-EEEEEeCCC--CCCCHHHHHHHHHHHHHCCCc
Q psy15362 7 VQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDA-IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNS 83 (200)
Q Consensus 7 ~~~~~~gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~-~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~ 83 (200)
.+|.++|+|+.+.|... . .....|++++++++. +++.+.|+. .|+.+.+++++ ++..|+.
T Consensus 170 ~ki~v~GiPv~~~f~~~------------~--~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~---~~~~~~~ 232 (391)
T PRK13608 170 STVKVTGIPIDNKFETP------------I--DQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDI---LAKSANA 232 (391)
T ss_pred HHEEEECeecChHhccc------------c--cHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHH---HhcCCCc
Confidence 35666788876554311 0 124567789998765 445566765 47777777764 3455788
Q ss_pred EEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcc
Q psy15362 84 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL 163 (200)
Q Consensus 84 ~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~ 163 (200)
+++++++++ .+..+++.+..+.. ++|+|+|++ +++..+|+.||+++.. .||++++|||+||+|+|++.-..-
T Consensus 233 ~~vvv~G~~--~~l~~~l~~~~~~~-~~v~~~G~~--~~~~~~~~~aDl~I~k---~gg~tl~EA~a~G~PvI~~~~~pg 304 (391)
T PRK13608 233 QVVMICGKS--KELKRSLTAKFKSN-ENVLILGYT--KHMNEWMASSQLMITK---PGGITISEGLARCIPMIFLNPAPG 304 (391)
T ss_pred eEEEEcCCC--HHHHHHHHHHhccC-CCeEEEecc--chHHHHHHhhhEEEeC---CchHHHHHHHHhCCCEEECCCCCC
Confidence 998776432 22223344444555 789999998 5788899999999963 468999999999999999742111
Q ss_pred hhhhHHHHHhhcCCCcceecCHHHHHHHHHHhhcCC
Q psy15362 164 ASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 164 ~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d~ 199 (200)
.+..-+.++...|.. +...+.+++.+...+|.+|+
T Consensus 305 qe~~N~~~~~~~G~g-~~~~~~~~l~~~i~~ll~~~ 339 (391)
T PRK13608 305 QELENALYFEEKGFG-KIADTPEEAIKIVASLTNGN 339 (391)
T ss_pred cchhHHHHHHhCCcE-EEeCCHHHHHHHHHHHhcCH
Confidence 122222344444553 44578888888888887775
No 79
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.56 E-value=8.8e-15 Score=137.00 Aligned_cols=170 Identities=19% Similarity=0.184 Sum_probs=112.7
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCC----cEEEE
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN----SILWL 87 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~----~~l~i 87 (200)
.++|||||++.|.+....++ .......+|+.+ ++..++++++|+ .|+++.+++||.++++++|+ ++|++
T Consensus 231 ~v~p~GID~~~f~~~~~~~~--~~~~~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~ 305 (726)
T PRK14501 231 DAFPMGIDYDKFHNSAQDPE--VQEEIRRLRQDL---RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQ 305 (726)
T ss_pred EEEECeEcHHHHHHHhcCch--HHHHHHHHHHHc---CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEE
Confidence 35899999999865431110 011123355553 456788899996 69999999999999999996 68888
Q ss_pred EcCC---c-ccHHHHHHHHHHc--------CCC--CCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHc-
Q psy15362 88 LKFP---A-VGEANIQATAQAL--------GLD--QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWT- 151 (200)
Q Consensus 88 vG~~---~-~~~~~l~~~~~~~--------gl~--~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~- 151 (200)
+|.+ + +..+.+++.+.++ |.. ...++|.|.++.+++..+|+.||+|+.||..+| |++++|||||
T Consensus 306 v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~ 385 (726)
T PRK14501 306 VAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASR 385 (726)
T ss_pred EecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEc
Confidence 8732 1 2234455544432 111 024567899999999999999999999997776 9999999999
Q ss_pred ----CCCeeecC-CCcchhhhHHHHHhhcCCCcce-e-cCHHHHHHHHHHhhcCC
Q psy15362 152 ----GTPVVTLP-GETLASRVAASQLATLGCPELI-A-RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 152 ----G~PVV~~~-g~~~~~r~~~~~~~~~g~~~~i-a-~~~~~yv~~a~~l~~d~ 199 (200)
|+||++.. |... .+. ..++ . .|.+++++...+++++|
T Consensus 386 ~~~~g~~vls~~~G~~~-------~l~----~~llv~P~d~~~la~ai~~~l~~~ 429 (726)
T PRK14501 386 TDGDGVLILSEMAGAAA-------ELA----EALLVNPNDIEGIAAAIKRALEMP 429 (726)
T ss_pred CCCCceEEEecccchhH-------HhC----cCeEECCCCHHHHHHHHHHHHcCC
Confidence 55666643 3210 010 1222 2 46777777766666543
No 80
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.54 E-value=9.8e-14 Score=118.19 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=108.0
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHH-HHHHHHHHHHCCCcEEE-EEc
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPST-LQMWVNVLKAVPNSILW-LLK 89 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~-l~a~~~i~~~~p~~~l~-ivG 89 (200)
..++||++.+.|.+. ..|++++++++..++++.++. .|+...+ ++++..+.+ ++.+++ ++|
T Consensus 155 ~~i~n~v~~~~~~~~-------------~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~--~~~~~~~i~G 219 (350)
T cd03785 155 VVTGNPVREEILALD-------------RERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR--KRLQVIHQTG 219 (350)
T ss_pred EEECCCCchHHhhhh-------------hhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc--cCeEEEEEcC
Confidence 457888887654311 117788998888777766653 3554444 466665542 466654 566
Q ss_pred CCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcc---hhh
Q psy15362 90 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL---ASR 166 (200)
Q Consensus 90 ~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~---~~r 166 (200)
. + ..+.+++.++++ . ++|+|.|++ +++..+|+.||+++.++ ++++++|||++|+|||+++-... ...
T Consensus 220 ~-g-~~~~l~~~~~~~--~-~~v~~~g~~--~~~~~~l~~ad~~v~~s---g~~t~~Eam~~G~Pvv~~~~~~~~~~~~~ 289 (350)
T cd03785 220 K-G-DLEEVKKAYEEL--G-VNYEVFPFI--DDMAAAYAAADLVISRA---GASTVAELAALGLPAILIPLPYAADDHQT 289 (350)
T ss_pred C-c-cHHHHHHHHhcc--C-CCeEEeehh--hhHHHHHHhcCEEEECC---CHhHHHHHHHhCCCEEEeecCCCCCCcHH
Confidence 4 3 457788888776 4 789999998 68888999999999654 46899999999999998642210 011
Q ss_pred hHHHHHhhcCCCcceec---CHHHHHHHHHHhhcCC
Q psy15362 167 VAASQLATLGCPELIAR---THKEYQDIAIRLGTDR 199 (200)
Q Consensus 167 ~~~~~~~~~g~~~~ia~---~~~~yv~~a~~l~~d~ 199 (200)
..+..+...|...++.. |.+++.+....++.|+
T Consensus 290 ~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 290 ANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325 (350)
T ss_pred HhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCH
Confidence 11233444465545553 7889988888887765
No 81
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.51 E-value=2e-13 Score=107.61 Aligned_cols=102 Identities=17% Similarity=0.063 Sum_probs=83.7
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCC-HHHHHhhcccccEEEeC
Q psy15362 58 NFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA-KEEHVRRGQLADVCLDT 136 (200)
Q Consensus 58 ~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~-~~~~~~~~~~aDv~l~~ 136 (200)
+.....|+.+.+++++.++.++.|+.+++++|.+ ......++.+..++.. ++|.+.|+++ .+++..+++.||+++.|
T Consensus 111 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~-~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~di~l~~ 188 (229)
T cd01635 111 GRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDG-PEREYLEELLAALLLL-DRVIFLGGLDPEELLALLLAAADVFVLP 188 (229)
T ss_pred EeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCC-CChHHHHHHHHhcCCc-ccEEEeCCCCcHHHHHHHhhcCCEEEec
Confidence 3334569999999999999999999999999964 4455566657777886 9999999985 46666667779999999
Q ss_pred CCCCC-chHHHHHHHcCCCeeecCCC
Q psy15362 137 PLCNG-HTTSMDVLWTGTPVVTLPGE 161 (200)
Q Consensus 137 ~~~~~-g~~~lEAma~G~PVV~~~g~ 161 (200)
+..++ |++++|||+||+|||+++..
T Consensus 189 ~~~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 189 SLREGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred ccccCcChHHHHHHhCCCCEEEcCCC
Confidence 87655 99999999999999998754
No 82
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.48 E-value=3.8e-13 Score=120.22 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=110.3
Q ss_pred eeEeeeCe-----eecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHH
Q psy15362 7 VQTSVNGI-----VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKA 79 (200)
Q Consensus 7 ~~~~~~gi-----~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~ 79 (200)
..|.++|. .+|.|||++.|......++ .......+|++++ +..++.++.|+ .|+++..++||.+++++
T Consensus 239 ~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~--~~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~ 313 (487)
T TIGR02398 239 TALDTGNRVVKLGAHPVGTDPERIRSALAAAS--IREMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLER 313 (487)
T ss_pred cceeECCEEEEEEEEECEecHHHHHHHhcCch--HHHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHh
Confidence 34555554 4899999998864432211 1223456888887 56788899996 59999999999999999
Q ss_pred CCC----cEEEEEcCCc----cc----HHHHHHHHHHc-------CCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCC
Q psy15362 80 VPN----SILWLLKFPA----VG----EANIQATAQAL-------GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN 140 (200)
Q Consensus 80 ~p~----~~l~ivG~~~----~~----~~~l~~~~~~~-------gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~ 140 (200)
+|+ ++|+++|.+. +. +.++++++.+. +.. ..+.|.+.+|.+++..+|+.||+++.|+..+
T Consensus 314 ~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~-pv~~~~~~v~~~el~alYr~ADV~lvT~lrD 392 (487)
T TIGR02398 314 RPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWT-PLQFFTRSLPYEEVSAWFAMADVMWITPLRD 392 (487)
T ss_pred CccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCc-cEEEEcCCCCHHHHHHHHHhCCEEEECcccc
Confidence 996 7999998632 11 23444444442 555 6788999999999999999999999998776
Q ss_pred C-chHHHHHHHcCC----CeeecC
Q psy15362 141 G-HTTSMDVLWTGT----PVVTLP 159 (200)
Q Consensus 141 ~-g~~~lEAma~G~----PVV~~~ 159 (200)
| +++..|+++|+. |+|.+.
T Consensus 393 GmNLVa~Eyva~~~~~~GvLILSe 416 (487)
T TIGR02398 393 GLNLVAKEYVAAQGLLDGVLVLSE 416 (487)
T ss_pred ccCcchhhHHhhhcCCCCCEEEec
Confidence 6 899999999988 777653
No 83
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=1.5e-12 Score=106.55 Aligned_cols=139 Identities=19% Similarity=0.141 Sum_probs=103.7
Q ss_pred EEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCCccc-HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccc
Q psy15362 54 IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVG-EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA 130 (200)
Q Consensus 54 ~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~-~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~a 130 (200)
..+++++|. .|+.+.+++++..+.+..++.+++++|.+ .. .+.+..++.+++.. +++.|+|+++.+++..+++.+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~ 277 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDG-PERREELEKLAKKLGLE-DNVKFLGYVPDEELAELLASA 277 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCC-CccHHHHHHHHHHhCCC-CcEEEecccCHHHHHHHHHhC
Confidence 566777774 58999999999999988888999999964 33 35677788888886 999999999977788889999
Q ss_pred cEEEeCCCCC-CchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceec-CHHHHHHHHHHhhcCC
Q psy15362 131 DVCLDTPLCN-GHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR-THKEYQDIAIRLGTDR 199 (200)
Q Consensus 131 Dv~l~~~~~~-~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~-~~~~yv~~a~~l~~d~ 199 (200)
|+++.|+.++ .|++++|||++|+|||++.......-+ ...+...++.. +.+++......+.+++
T Consensus 278 ~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~-----~~~~~g~~~~~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 278 DVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVV-----EDGETGLLVPPGDVEELADALEQLLEDP 343 (381)
T ss_pred CEEEeccccccchHHHHHHHhcCCcEEECCCCChHHHh-----cCCCceEecCCCCHHHHHHHHHHHhcCH
Confidence 9999998764 589999999999999997654332211 12111112222 4678887777776553
No 84
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.47 E-value=3.8e-13 Score=121.26 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=36.5
Q ss_pred HHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcc
Q psy15362 122 EHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETL 163 (200)
Q Consensus 122 ~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~ 163 (200)
++..+|+.||+++.||.+|+ |++++||||||+|||+++...+
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf 509 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGF 509 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcch
Confidence 46667899999999998876 9999999999999999876544
No 85
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.47 E-value=6.2e-13 Score=113.92 Aligned_cols=142 Identities=12% Similarity=0.092 Sum_probs=105.3
Q ss_pred hhhcCCCCCCEEEEEeCCC-----CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCC-CCCcEEEecc
Q psy15362 44 RQQYGLPEDAIVYCNFNQL-----YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGL-DQHRILFSNV 117 (200)
Q Consensus 44 R~~l~l~~~~~v~~~~~r~-----~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl-~~~rv~f~g~ 117 (200)
|+.++++++.+++++.+|. .|+.+.+++++.++.+. +..+++.|+ +..++.+++.++++++ . ++|+|+|.
T Consensus 190 ~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~-~~~~~~l~~~~~~~~~~~-~~v~~~~~ 265 (363)
T cd03786 190 LELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNH-PRTRPRIREAGLEFLGHH-PNVLLISP 265 (363)
T ss_pred hhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECC-CChHHHHHHHHHhhccCC-CCEEEECC
Confidence 4678888777777777764 47788899999887543 677777664 3556889998888887 5 89999999
Q ss_pred CCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCc-chhhhHHHHHhhcCCCcceecCHHHHHHHHHHhh
Q psy15362 118 AAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET-LASRVAASQLATLGCPELIARTHKEYQDIAIRLG 196 (200)
Q Consensus 118 ~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~-~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~ 196 (200)
.+..++..+|+.||+++.+|. | ...|||++|+|||+..... ... +...|..-.+.++.++..+...++.
T Consensus 266 ~~~~~~~~l~~~ad~~v~~Sg---g-i~~Ea~~~g~PvI~~~~~~~~~~------~~~~g~~~~~~~~~~~i~~~i~~ll 335 (363)
T cd03786 266 LGYLYFLLLLKNADLVLTDSG---G-IQEEASFLGVPVLNLRDRTERPE------TVESGTNVLVGTDPEAILAAIEKLL 335 (363)
T ss_pred cCHHHHHHHHHcCcEEEEcCc---c-HHhhhhhcCCCEEeeCCCCccch------hhheeeEEecCCCHHHHHHHHHHHh
Confidence 888899999999999998764 3 4799999999999975321 111 1122443344456888888888888
Q ss_pred cCC
Q psy15362 197 TDR 199 (200)
Q Consensus 197 ~d~ 199 (200)
+|+
T Consensus 336 ~~~ 338 (363)
T cd03786 336 SDE 338 (363)
T ss_pred cCc
Confidence 775
No 86
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.44 E-value=1.5e-12 Score=111.61 Aligned_cols=161 Identities=12% Similarity=0.110 Sum_probs=106.7
Q ss_pred CeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHH-HHHHHHHHHCCCcEEEEEc
Q psy15362 13 GIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTL-QMWVNVLKAVPNSILWLLK 89 (200)
Q Consensus 13 gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l-~a~~~i~~~~p~~~l~ivG 89 (200)
..+++||++.+.+.+. ..+++++++++..+++.+++. .|+...++ +++.++.+. | ..++++|
T Consensus 156 i~vi~n~v~~~~~~~~-------------~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G 220 (357)
T PRK00726 156 AVVTGNPVREEILALA-------------APPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTG 220 (357)
T ss_pred EEEECCCCChHhhccc-------------chhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcC
Confidence 4568899987654311 123457777777776677654 35544444 777776543 4 5567778
Q ss_pred CCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCc-c--hhh
Q psy15362 90 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET-L--ASR 166 (200)
Q Consensus 90 ~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~-~--~~r 166 (200)
.+ . .+.+++..+ +++ + |+|.|++ +++..+|+.||+++.++ |+++++|||+||+|||+.+... . ...
T Consensus 221 ~g-~-~~~~~~~~~-~~~--~-v~~~g~~--~~~~~~~~~~d~~i~~~---g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~ 289 (357)
T PRK00726 221 KG-D-LEEVRAAYA-AGI--N-AEVVPFI--DDMAAAYAAADLVICRA---GASTVAELAAAGLPAILVPLPHAADDHQT 289 (357)
T ss_pred CC-c-HHHHHHHhh-cCC--c-EEEeehH--hhHHHHHHhCCEEEECC---CHHHHHHHHHhCCCEEEecCCCCCcCcHH
Confidence 64 3 455665556 777 3 9999998 67888999999999754 4688999999999999875321 1 111
Q ss_pred hHHHHHhhcCCCccee-cC--HHHHHHHHHHhhcCC
Q psy15362 167 VAASQLATLGCPELIA-RT--HKEYQDIAIRLGTDR 199 (200)
Q Consensus 167 ~~~~~~~~~g~~~~ia-~~--~~~yv~~a~~l~~d~ 199 (200)
.-+..+...|..-++. .+ .+++.+...++++|+
T Consensus 290 ~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~ 325 (357)
T PRK00726 290 ANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDP 325 (357)
T ss_pred HHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCH
Confidence 1133444556544554 34 889999998888875
No 87
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.44 E-value=1.5e-12 Score=112.58 Aligned_cols=149 Identities=18% Similarity=0.185 Sum_probs=99.9
Q ss_pred hhhhhhcCCCCCCEE-EEEeC-CCC---CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHc-CCCCCcEEE
Q psy15362 41 ITSRQQYGLPEDAIV-YCNFN-QLY---KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILF 114 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v-~~~~~-r~~---K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~-gl~~~rv~f 114 (200)
...|++++++++..+ ++..+ |.. +..+.+++++..+.++.|+.+++++|+++...+.++++++++ |+. +.+
T Consensus 174 ~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---v~~ 250 (380)
T PRK00025 174 AAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---VTL 250 (380)
T ss_pred HHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---eEE
Confidence 567888999877654 33334 322 346788999999988889999999975344567788888877 663 555
Q ss_pred eccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCC-cchhhhHHHHHh--hcC----------CCcce
Q psy15362 115 SNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE-TLASRVAASQLA--TLG----------CPELI 181 (200)
Q Consensus 115 ~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~-~~~~r~~~~~~~--~~g----------~~~~i 181 (200)
.. .++..+|+.||+++.+| |.+++|||+||+|+|+.+.- .+..-....+.+ ..+ .++++
T Consensus 251 ~~----~~~~~~~~~aDl~v~~s----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (380)
T PRK00025 251 LD----GQKREAMAAADAALAAS----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELL 322 (380)
T ss_pred Ec----ccHHHHHHhCCEEEECc----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhc
Confidence 43 36788999999999875 67788999999999976332 111111111111 111 23344
Q ss_pred e--cCHHHHHHHHHHhhcCCC
Q psy15362 182 A--RTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 182 a--~~~~~yv~~a~~l~~d~e 200 (200)
. .+.+++.+...++++|++
T Consensus 323 ~~~~~~~~l~~~i~~ll~~~~ 343 (380)
T PRK00025 323 QEEATPEKLARALLPLLADGA 343 (380)
T ss_pred CCCCCHHHHHHHHHHHhcCHH
Confidence 3 367788888888888864
No 88
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.44 E-value=1.2e-12 Score=111.46 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=105.5
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHH-HHHHHHHHHHHCCCcEEEEEcC
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPS-TLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~-~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
.+|+||++...+.++ ..+++++++++.++++++++. .|.... +++++.++.+ ++.+++++++
T Consensus 153 ~~i~n~v~~~~~~~~-------------~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~--~~~~~~~~~g 217 (348)
T TIGR01133 153 VLVGNPVRQEIRSLP-------------VPRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAE--KGIQIVHQTG 217 (348)
T ss_pred eEEcCCcCHHHhccc-------------chhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh--cCcEEEEECC
Confidence 578888876543211 113467888888888887754 344433 4467666654 3455655543
Q ss_pred CcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcch--hhhH
Q psy15362 91 PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLA--SRVA 168 (200)
Q Consensus 91 ~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~--~r~~ 168 (200)
++ ..+.+++.++++++. +++.|.. .++..+|+.||+++.++ |+++++|||++|+|+|+++-.... .+..
T Consensus 218 ~~-~~~~l~~~~~~~~l~-~~v~~~~----~~~~~~l~~ad~~v~~~---g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~ 288 (348)
T TIGR01133 218 KN-DLEKVKNVYQELGIE-AIVTFID----ENMAAAYAAADLVISRA---GASTVAELAAAGVPAILIPYPYAADDQYYN 288 (348)
T ss_pred cc-hHHHHHHHHhhCCce-EEecCcc----cCHHHHHHhCCEEEECC---ChhHHHHHHHcCCCEEEeeCCCCccchhhH
Confidence 33 357788888888886 7777762 26778899999999753 578999999999999986422111 1112
Q ss_pred HHHHhhcCCCccee-c--CHHHHHHHHHHhhcCCC
Q psy15362 169 ASQLATLGCPELIA-R--THKEYQDIAIRLGTDRD 200 (200)
Q Consensus 169 ~~~~~~~g~~~~ia-~--~~~~yv~~a~~l~~d~e 200 (200)
..++...+..-++. . +.+++.+...++++|++
T Consensus 289 ~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~ 323 (348)
T TIGR01133 289 AKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPA 323 (348)
T ss_pred HHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHH
Confidence 23444444443443 2 48899998888888763
No 89
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.43 E-value=2.9e-12 Score=110.50 Aligned_cols=144 Identities=12% Similarity=0.118 Sum_probs=100.1
Q ss_pred hhhhhhcCCCCCCEEEEEeCCC---CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc
Q psy15362 41 ITSRQQYGLPEDAIVYCNFNQL---YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV 117 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~~r~---~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~ 117 (200)
...+++++. ++.+++++..|. .|+.+.+++++.++.++.|+.+++++++++. ...+++.+.++.. ++|+|+|.
T Consensus 187 ~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--~~~~~~~~~~~~~-~~v~~~~~ 262 (365)
T TIGR00236 187 SPVLSEFGE-DKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNP--VVREPLHKHLGDS-KRVHLIEP 262 (365)
T ss_pred hhHHHhcCC-CCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCCh--HHHHHHHHHhCCC-CCEEEECC
Confidence 345666763 334555555443 3778899999999988889999998865322 2222344445665 89999999
Q ss_pred CCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC--CCcchhhhHHHHHhhcCCCcceecCHHHHHHHHHHh
Q psy15362 118 AAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP--GETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 195 (200)
Q Consensus 118 ~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~--g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l 195 (200)
++..++..+|+.+|+++.+| |...+|||+||+|||+.. |... . +. ..|..-++..|.++..+.+.++
T Consensus 263 ~~~~~~~~~l~~ad~vv~~S----g~~~~EA~a~g~PvI~~~~~~~~~-e-----~~-~~g~~~lv~~d~~~i~~ai~~l 331 (365)
T TIGR00236 263 LEYLDFLNLAANSHLILTDS----GGVQEEAPSLGKPVLVLRDTTERP-E-----TV-EAGTNKLVGTDKENITKAAKRL 331 (365)
T ss_pred CChHHHHHHHHhCCEEEECC----hhHHHHHHHcCCCEEECCCCCCCh-H-----HH-hcCceEEeCCCHHHHHHHHHHH
Confidence 99889999999999998765 345799999999999963 3211 1 11 1243334556888888888888
Q ss_pred hcCC
Q psy15362 196 GTDR 199 (200)
Q Consensus 196 ~~d~ 199 (200)
++|+
T Consensus 332 l~~~ 335 (365)
T TIGR00236 332 LTDP 335 (365)
T ss_pred HhCh
Confidence 7765
No 90
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.36 E-value=1.4e-11 Score=107.70 Aligned_cols=150 Identities=15% Similarity=0.088 Sum_probs=104.1
Q ss_pred hhhhhhcCCCCCCEEEEEe-C-CC---CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEe
Q psy15362 41 ITSRQQYGLPEDAIVYCNF-N-QL---YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS 115 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~-~-r~---~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~ 115 (200)
...|++++++++..+++.. | |. .|+.+.+++++..+.++.|+.++++.+..+...+.+++..++++.. .+|++.
T Consensus 179 ~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 257 (385)
T TIGR00215 179 KSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPD-LQLHLI 257 (385)
T ss_pred HHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCC-CcEEEE
Confidence 4568889998876655443 2 43 4678889999999988899999877654344566777777777775 778776
Q ss_pred ccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhh-HHH------------HHhhcCCCccee
Q psy15362 116 NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRV-AAS------------QLATLGCPELIA 182 (200)
Q Consensus 116 g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~-~~~------------~~~~~g~~~~ia 182 (200)
+. +...+|+.||+++.+| |++++|+|+||+|+|.....+..... +.. +......+|++.
T Consensus 258 ~~----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q 329 (385)
T TIGR00215 258 DG----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQ 329 (385)
T ss_pred Cc----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcC
Confidence 53 3445889999999887 57777999999999976433322211 111 112223456664
Q ss_pred c--CHHHHHHHHHHhhcCC
Q psy15362 183 R--THKEYQDIAIRLGTDR 199 (200)
Q Consensus 183 ~--~~~~yv~~a~~l~~d~ 199 (200)
+ +++...+.+.+|++|+
T Consensus 330 ~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 330 EECTPHPLAIALLLLLENG 348 (385)
T ss_pred CCCCHHHHHHHHHHHhcCC
Confidence 3 5778888888888886
No 91
>KOG0853|consensus
Probab=99.20 E-value=1.7e-10 Score=102.42 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=107.4
Q ss_pred hhhhhhhcCCCCCCEEEEEeCC--CCCCCHHHHHHHHHHHHHC-----CCcEEEEEcCCc-c--------cHHHHHHHHH
Q psy15362 40 VITSRQQYGLPEDAIVYCNFNQ--LYKIDPSTLQMWVNVLKAV-----PNSILWLLKFPA-V--------GEANIQATAQ 103 (200)
Q Consensus 40 ~~~~R~~l~l~~~~~v~~~~~r--~~K~~~~~l~a~~~i~~~~-----p~~~l~ivG~~~-~--------~~~~l~~~~~ 103 (200)
+...|...+.....+++..+.+ +.|++..+++++.+..... ++-++++.|+.| . ...+++++++
T Consensus 260 ~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie 339 (495)
T KOG0853|consen 260 RLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIE 339 (495)
T ss_pred ccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHH
Confidence 4556667777776788887776 4688888999999888877 567888888432 1 1246788999
Q ss_pred HcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCC-CCCchHHHHHHHcCCCeeecC-CCcchhhhHHHHHhhcCCCcc-
Q psy15362 104 ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLP-GETLASRVAASQLATLGCPEL- 180 (200)
Q Consensus 104 ~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~-~~~g~~~lEAma~G~PVV~~~-g~~~~~r~~~~~~~~~g~~~~- 180 (200)
++++..+.|.|+...+..+-..+++.+...+.+.. +.+|++++|||+||+|||+++ |..... + . -|..++
T Consensus 340 ~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~Ei-V-----~-~~~tG~l 412 (495)
T KOG0853|consen 340 EYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEI-V-----V-HGVTGLL 412 (495)
T ss_pred HhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEE-E-----E-cCCccee
Confidence 99985489999898887666666666666665544 457999999999999999864 433211 1 0 133343
Q ss_pred eecCHH---HHHHHHHHhhcCCC
Q psy15362 181 IARTHK---EYQDIAIRLGTDRD 200 (200)
Q Consensus 181 ia~~~~---~yv~~a~~l~~d~e 200 (200)
+..+.+ .+....+++.+||+
T Consensus 413 ~dp~~e~~~~~a~~~~kl~~~p~ 435 (495)
T KOG0853|consen 413 IDPGQEAVAELADALLKLRRDPE 435 (495)
T ss_pred eCCchHHHHHHHHHHHHHhcCHH
Confidence 334555 47777777777764
No 92
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.12 E-value=4.2e-10 Score=101.80 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=106.3
Q ss_pred EEEEEeCCC-CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc--cHHHHHHHHHHcCCC----------------------
Q psy15362 54 IVYCNFNQL-YKIDPSTLQMWVNVLKAVPNSILWLLKFPAV--GEANIQATAQALGLD---------------------- 108 (200)
Q Consensus 54 ~v~~~~~r~-~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~--~~~~l~~~~~~~gl~---------------------- 108 (200)
+++..+-|+ .|..+.+++++.++.++.|+++|.+.|.+.. ....+++++++++++
T Consensus 322 ~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (519)
T TIGR03713 322 EIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQT 401 (519)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccc
Confidence 444443365 5778899999999999999999999997532 235677777777653
Q ss_pred ------CCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcce
Q psy15362 109 ------QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELI 181 (200)
Q Consensus 109 ------~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~i 181 (200)
.++|.|.|+.+..++...|+.+.+++++|..++ + +.+||++.|+|+|- .|++ -+-.-|.++.+
T Consensus 402 ~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqIn-yg~~--------~~V~d~~NG~l 471 (519)
T TIGR03713 402 DEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQIN-KVET--------DYVEHNKNGYI 471 (519)
T ss_pred hhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCeee-cCCc--------eeeEcCCCcEE
Confidence 169999999987789999999999999998776 6 99999999999993 2221 12233777888
Q ss_pred ecCHHHHHHHHHHhhcCC
Q psy15362 182 ARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 182 a~~~~~yv~~a~~l~~d~ 199 (200)
..+..++.+.+..+++|+
T Consensus 472 i~d~~~l~~al~~~L~~~ 489 (519)
T TIGR03713 472 IDDISELLKALDYYLDNL 489 (519)
T ss_pred eCCHHHHHHHHHHHHhCH
Confidence 899999999998888775
No 93
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=6.7e-09 Score=92.93 Aligned_cols=115 Identities=18% Similarity=0.021 Sum_probs=89.7
Q ss_pred hhhhhhhcCCCC--CCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc-cHHHHHHHHHHcCCCCCcEEE
Q psy15362 40 VITSRQQYGLPE--DAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILF 114 (200)
Q Consensus 40 ~~~~R~~l~l~~--~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~-~~~~l~~~~~~~gl~~~rv~f 114 (200)
+..+++++|++. +.++++.++|+ +|+.+.+++++..++++. .+++++|.+.+ .++.+..+++.+. +++.+
T Consensus 279 k~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~---~~~~~ 353 (487)
T COG0297 279 KVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHP---GRVLV 353 (487)
T ss_pred HHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcC---ceEEE
Confidence 456788999984 56899999996 699999999999999876 99999997422 2355666676643 45666
Q ss_pred eccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecC
Q psy15362 115 SNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 115 ~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~ 159 (200)
.-..+..-...+|+.+|+++.||.++. |.+-++||..|++.|+..
T Consensus 354 ~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~ 399 (487)
T COG0297 354 VIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRE 399 (487)
T ss_pred EeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcc
Confidence 555554445557899999999999875 999999999999888754
No 94
>KOG1387|consensus
Probab=98.96 E-value=1.5e-08 Score=86.03 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=106.2
Q ss_pred hhhhhcCC-CCCCEEEEEeC--CCCCCCHHHHHHHHHHHHHCC------CcEEEEEcCC-c-ccHH---HHHHHHHHcCC
Q psy15362 42 TSRQQYGL-PEDAIVYCNFN--QLYKIDPSTLQMWVNVLKAVP------NSILWLLKFP-A-VGEA---NIQATAQALGL 107 (200)
Q Consensus 42 ~~R~~l~l-~~~~~v~~~~~--r~~K~~~~~l~a~~~i~~~~p------~~~l~ivG~~-~-~~~~---~l~~~~~~~gl 107 (200)
.+++.++- .++.+.+.+++ |+.|+|+ .++.++--+.+.| +++|+++|+- + .+.+ .|+.++.++.+
T Consensus 257 ~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i 335 (465)
T KOG1387|consen 257 DLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKI 335 (465)
T ss_pred HHHHHhcccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCC
Confidence 44444443 23345555554 7899998 7777765555544 5899999962 1 2333 46778999999
Q ss_pred CCCcEEEeccCCHHHHHhhcccccEEEeCCCC-CCchHHHHHHHcCCCeeec--CCCcchhhhHHHHHhhcC-CCcceec
Q psy15362 108 DQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGTPVVTL--PGETLASRVAASQLATLG-CPELIAR 183 (200)
Q Consensus 108 ~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~-~~g~~~lEAma~G~PVV~~--~g~~~~~r~~~~~~~~~g-~~~~ia~ 183 (200)
+ ++|.|.-.+|++++..+|+.|-+-+.+-.- .+|+++.|+||+|+=.|+. .|+.+ .-+. .-.| ..++.+.
T Consensus 336 ~-~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~l-DIV~----~~~G~~tGFla~ 409 (465)
T KOG1387|consen 336 P-KHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLL-DIVT----PWDGETTGFLAP 409 (465)
T ss_pred c-cceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCce-eeee----ccCCccceeecC
Confidence 8 999999999999999999999999988654 4799999999999877764 34432 1110 0113 3468889
Q ss_pred CHHHHHHHHHHhhc
Q psy15362 184 THKEYQDIAIRLGT 197 (200)
Q Consensus 184 ~~~~yv~~a~~l~~ 197 (200)
+.++|++..++..+
T Consensus 410 t~~EYaE~iLkIv~ 423 (465)
T KOG1387|consen 410 TDEEYAEAILKIVK 423 (465)
T ss_pred ChHHHHHHHHHHHH
Confidence 99999998887765
No 95
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.91 E-value=1.3e-08 Score=90.28 Aligned_cols=120 Identities=11% Similarity=0.124 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHH
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTS 145 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~ 145 (200)
+..++++.++.++.||++|-| |.+....+.|+++ .++ + +.+++-|+.+ .++..+|+.||++|+++..++ ++++
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y--~-nvvly~~~~~-~~l~~ly~~~dlyLdin~~e~~~~al 364 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY--D-NVKLYPNITT-QKIQELYQTCDIYLDINHGNEILNAV 364 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc--C-CcEEECCcCh-HHHHHHHHhccEEEEccccccHHHHH
Confidence 789999999999999999999 7544435788888 665 4 7788888775 457788999999999998765 9999
Q ss_pred HHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcce-ecCHHHHHHHHHHhhcCC
Q psy15362 146 MDVLWTGTPVVTLPGETLASRVAASQLATLGCPELI-ARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 146 lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~i-a~~~~~yv~~a~~l~~d~ 199 (200)
.||+..|+||++.+-....... +.. ..++ ..+.+++++....+++|+
T Consensus 365 ~eA~~~G~pI~afd~t~~~~~~----i~~---g~l~~~~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 365 RRAFEYNLLILGFEETAHNRDF----IAS---ENIFEHNEVDQLISKLKDLLNDP 412 (438)
T ss_pred HHHHHcCCcEEEEecccCCccc----ccC---CceecCCCHHHHHHHHHHHhcCH
Confidence 9999999999997533110000 000 1233 368889999999888876
No 96
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.84 E-value=2.7e-08 Score=94.93 Aligned_cols=138 Identities=16% Similarity=0.191 Sum_probs=93.4
Q ss_pred eecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcE--EEEE--
Q psy15362 15 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSI--LWLL-- 88 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~--l~iv-- 88 (200)
.+|-|||.+.|......+ . -+.....+|++++ +..+++++.|+ .|+++.-++||.++++++|+.+ ++++
T Consensus 330 ~~PiGID~~~f~~~~~~~-~-v~~~~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQI 404 (934)
T PLN03064 330 AFPIGIDSDRFIRALETP-Q-VQQHIKELKERFA---GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQI 404 (934)
T ss_pred EEeCEEcHHHHHHHhcCh-h-HHHHHHHHHHHhC---CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEE
Confidence 478999999885432211 1 1223456788775 45688889986 5999999999999999999753 4554
Q ss_pred cCC----cccHHHHHHHHHH--------cCCC-CCcEEEec-cCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHc--
Q psy15362 89 KFP----AVGEANIQATAQA--------LGLD-QHRILFSN-VAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWT-- 151 (200)
Q Consensus 89 G~~----~~~~~~l~~~~~~--------~gl~-~~rv~f~g-~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~-- 151 (200)
.-+ .+..+.+++.+.+ +|-. -.-|+++. .++.+++.++|+.||++|.|+-.+| +++..|+|+|
T Consensus 405 a~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~ 484 (934)
T PLN03064 405 AVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQD 484 (934)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhc
Confidence 211 1233444433322 2211 01144443 3789999999999999999987766 9999999999
Q ss_pred ---CCCeee
Q psy15362 152 ---GTPVVT 157 (200)
Q Consensus 152 ---G~PVV~ 157 (200)
|++|++
T Consensus 485 ~~~GvLILS 493 (934)
T PLN03064 485 SKKGVLILS 493 (934)
T ss_pred CCCCCeEEe
Confidence 667765
No 97
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.78 E-value=7.3e-08 Score=82.48 Aligned_cols=117 Identities=14% Similarity=-0.002 Sum_probs=76.7
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccE
Q psy15362 53 AIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADV 132 (200)
Q Consensus 53 ~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv 132 (200)
...++++|++.|.. ++ .+..|+.+|+++|++ +..+ ... ++|+|+|+++.+++..+|+. |+
T Consensus 169 ~~~i~yaG~l~k~~--~l------~~~~~~~~l~i~G~g-~~~~---------~~~-~~V~f~G~~~~eel~~~l~~-~~ 228 (333)
T PRK09814 169 QKKINFAGNLEKSP--FL------KNWSQGIKLTVFGPN-PEDL---------ENS-ANISYKGWFDPEELPNELSK-GF 228 (333)
T ss_pred CceEEEecChhhch--HH------HhcCCCCeEEEECCC-cccc---------ccC-CCeEEecCCCHHHHHHHHhc-Cc
Confidence 45677888887653 11 113578999999974 4322 344 89999999999999998887 55
Q ss_pred EEeCC------------CCCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCHHHHHHHHHHh
Q psy15362 133 CLDTP------------LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 195 (200)
Q Consensus 133 ~l~~~------------~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l 195 (200)
.+.+. .+..+..+.|+||||+|||+.....+. .+++. +-.+++.++.+++.+.+..+
T Consensus 229 gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~-----~~V~~-~~~G~~v~~~~el~~~l~~~ 297 (333)
T PRK09814 229 GLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIA-----DFIVE-NGLGFVVDSLEELPEIIDNI 297 (333)
T ss_pred CeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHH-----HHHHh-CCceEEeCCHHHHHHHHHhc
Confidence 44322 234467799999999999997654332 23333 23344555666666665543
No 98
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.50 E-value=4e-06 Score=73.70 Aligned_cols=163 Identities=16% Similarity=0.168 Sum_probs=100.1
Q ss_pred eeEeeeCeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCC-EEEEEeC-CC---CCCCHHHHHHHHHHHHHCC
Q psy15362 7 VQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDA-IVYCNFN-QL---YKIDPSTLQMWVNVLKAVP 81 (200)
Q Consensus 7 ~~~~~~gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~-~v~~~~~-r~---~K~~~~~l~a~~~i~~~~p 81 (200)
+++.++|.|+.+.+.... +. +++++. .+...-| |. .+..+.+++++.++.++ |
T Consensus 180 ~k~~~vGnPv~d~l~~~~-------------------~~--~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~ 237 (396)
T TIGR03492 180 VRASYLGNPMMDGLEPPE-------------------RK--PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDS-Q 237 (396)
T ss_pred CeEEEeCcCHHhcCcccc-------------------cc--ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhC-C
Confidence 478888988877664210 00 444443 3333333 32 23456888998888766 8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHcCCCC-------------CcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHH
Q psy15362 82 NSILWLLKFPAVGEANIQATAQALGLDQ-------------HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDV 148 (200)
Q Consensus 82 ~~~l~ivG~~~~~~~~l~~~~~~~gl~~-------------~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEA 148 (200)
+.++++.-.+....+.+++..++.|+.. +++.+..+. .++..+|+.||++|..+ |++..|+
T Consensus 238 ~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~ADlvI~rS----Gt~T~E~ 311 (396)
T TIGR03492 238 PFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR--GAFAEILHWADLGIAMA----GTATEQA 311 (396)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEech--HhHHHHHHhCCEEEECc----CHHHHHH
Confidence 8888776433355677887777666641 125555554 57788999999999763 4666999
Q ss_pred HHcCCCeeecCCCcchhhhHHHHHhhc----CCCcce-ecCHHHHHHHHHHhhcCC
Q psy15362 149 LWTGTPVVTLPGETLASRVAASQLATL----GCPELI-ARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 149 ma~G~PVV~~~g~~~~~r~~~~~~~~~----g~~~~i-a~~~~~yv~~a~~l~~d~ 199 (200)
+++|+|+|..+..... ..+.+.+.. |-...+ ..+.+...+.+.++.+|+
T Consensus 312 a~lg~P~Ilip~~~~q--~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 312 VGLGKPVIQLPGKGPQ--FTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADP 365 (396)
T ss_pred HHhCCCEEEEeCCCCH--HHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCH
Confidence 9999999997643221 122222221 322222 345577777777777765
No 99
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.37 E-value=1.4e-05 Score=69.59 Aligned_cols=133 Identities=17% Similarity=0.295 Sum_probs=82.6
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccccc
Q psy15362 52 DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD 131 (200)
Q Consensus 52 ~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aD 131 (200)
..++|++.|+.....+.+++.+.+.+.+.+...++..|. +...+.++ .+. ++|.+.+++|..+ ++..||
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~-~~~~~~~~------~~~-~~v~~~~~~p~~~---ll~~~~ 293 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGR-GVDPADLG------ELP-PNVEVRQWVPQLE---ILKKAD 293 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECC-CCChhHhc------cCC-CCeEEeCCCCHHH---HHhhCC
Confidence 457888888865555557776666666665444445553 23222222 244 8899999998654 467899
Q ss_pred EEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCccee---cCHHHHHHHHHHhhcCC
Q psy15362 132 VCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 132 v~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia---~~~~~yv~~a~~l~~d~ 199 (200)
+++.. +|..|++||+++|+|+|+.+...-.... +..+...|....+. -+.+++.+...++++|+
T Consensus 294 ~~I~h---gG~~t~~Eal~~G~P~v~~p~~~dq~~~-a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~ 360 (392)
T TIGR01426 294 AFITH---GGMNSTMEALFNGVPMVAVPQGADQPMT-ARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDP 360 (392)
T ss_pred EEEEC---CCchHHHHHHHhCCCEEecCCcccHHHH-HHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCH
Confidence 99964 4557899999999999997533211222 22344456554443 24566666666666654
No 100
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.37 E-value=1.6e-05 Score=68.78 Aligned_cols=164 Identities=10% Similarity=0.037 Sum_probs=89.9
Q ss_pred eeEeeeCeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeC-CCCCCCHHHHHHHHHHHHHC-CCcE
Q psy15362 7 VQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFN-QLYKIDPSTLQMWVNVLKAV-PNSI 84 (200)
Q Consensus 7 ~~~~~~gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~-r~~K~~~~~l~a~~~i~~~~-p~~~ 84 (200)
-++.++|.|+-..+... .+...|+.++++++..++...| ... ...+-+++.+++... .+.+
T Consensus 154 ~k~~~tG~Pvr~~~~~~---------------~~~~~~~~~~l~~~~~~iLv~GGS~G--a~~in~~~~~~l~~l~~~~~ 216 (352)
T PRK12446 154 EKVIYTGSPVREEVLKG---------------NREKGLAFLGFSRKKPVITIMGGSLG--AKKINETVREALPELLLKYQ 216 (352)
T ss_pred CCeEEECCcCCcccccc---------------cchHHHHhcCCCCCCcEEEEECCccc--hHHHHHHHHHHHHhhccCcE
Confidence 35677787766544210 1235566788887765554444 332 112223333333322 2466
Q ss_pred EEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCc--
Q psy15362 85 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET-- 162 (200)
Q Consensus 85 l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~-- 162 (200)
++.+.+... +++.... . +++...+++. +++..+|+.||+++.- +|++++.|++++|+|.|..+-..
T Consensus 217 vv~~~G~~~----~~~~~~~--~--~~~~~~~f~~-~~m~~~~~~adlvIsr---~G~~t~~E~~~~g~P~I~iP~~~~~ 284 (352)
T PRK12446 217 IVHLCGKGN----LDDSLQN--K--EGYRQFEYVH-GELPDILAITDFVISR---AGSNAIFEFLTLQKPMLLIPLSKFA 284 (352)
T ss_pred EEEEeCCch----HHHHHhh--c--CCcEEecchh-hhHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEEcCCCCC
Confidence 666543221 2222222 1 2234446652 4678889999999964 57899999999999999874321
Q ss_pred --chhhhHHHHHhhcCCCcceec---CHHHHHHHHHHhhcCC
Q psy15362 163 --LASRVAASQLATLGCPELIAR---THKEYQDIAIRLGTDR 199 (200)
Q Consensus 163 --~~~r~~~~~~~~~g~~~~ia~---~~~~yv~~a~~l~~d~ 199 (200)
.....-+..+...|....+.+ +.+.+.+...++.+|+
T Consensus 285 ~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 285 SRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred CCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCH
Confidence 112222344555565544432 4566666666666664
No 101
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=1.9e-05 Score=69.04 Aligned_cols=148 Identities=19% Similarity=0.143 Sum_probs=95.0
Q ss_pred hhhhhhhcCCCCCCEEEEEeCCCCCCC-HHHHHHHHHHHHHCCCcEEEEEcCCccc-HHHHHHHHHHcCCCC--------
Q psy15362 40 VITSRQQYGLPEDAIVYCNFNQLYKID-PSTLQMWVNVLKAVPNSILWLLKFPAVG-EANIQATAQALGLDQ-------- 109 (200)
Q Consensus 40 ~~~~R~~l~l~~~~~v~~~~~r~~K~~-~~~l~a~~~i~~~~p~~~l~ivG~~~~~-~~~l~~~~~~~gl~~-------- 109 (200)
...+|.+++.+. .++...+. ..+- +..++++.+++++.||..++++-. .++ -..+++++++.|+.-
T Consensus 220 ~~~~r~~l~~~r--~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPR-HpERf~~v~~l~~~~gl~~~~rS~~~~ 295 (419)
T COG1519 220 LAALRRQLGGHR--PVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPR-HPERFKAVENLLKRKGLSVTRRSQGDP 295 (419)
T ss_pred HHHHHHhcCCCC--ceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecC-ChhhHHHHHHHHHHcCCeEEeecCCCC
Confidence 356788888762 33333334 4443 448899999999999999999974 344 367888898887641
Q ss_pred ----CcEEEeccCCHHHHHhhcccccEEEeC-C-CCCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceec
Q psy15362 110 ----HRILFSNVAAKEEHVRRGQLADVCLDT-P-LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR 183 (200)
Q Consensus 110 ----~rv~f~g~~~~~~~~~~~~~aDv~l~~-~-~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~ 183 (200)
..|.+...+ -|+..+|+.+||...- | --.||-..+|+.++|+|||+-+-..-.......+..+-|. +..+
T Consensus 296 ~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~--~~v~ 371 (419)
T COG1519 296 PFSDTDVLLGDTM--GELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAG--LQVE 371 (419)
T ss_pred CCCCCcEEEEecH--hHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCe--EEEC
Confidence 245555444 5888999999998643 2 2267888999999999999954332222233333332221 4445
Q ss_pred CHHHHHHHHHHhh
Q psy15362 184 THKEYQDIAIRLG 196 (200)
Q Consensus 184 ~~~~yv~~a~~l~ 196 (200)
+ ++.+..++.+.
T Consensus 372 ~-~~~l~~~v~~l 383 (419)
T COG1519 372 D-ADLLAKAVELL 383 (419)
T ss_pred C-HHHHHHHHHHh
Confidence 5 44444444443
No 102
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=1.5e-05 Score=69.14 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHCC-CcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHH
Q psy15362 69 TLQMWVNVLKAVP-NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMD 147 (200)
Q Consensus 69 ~l~a~~~i~~~~p-~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lE 147 (200)
+-+++.++....+ +.+++..++.+ ..+++++.-.++++ +.+.++. +++..+|+.||+++. ..|++|+.|
T Consensus 198 ln~~v~~~~~~l~~~~~v~~~~G~~-~~~~~~~~~~~~~~----~~v~~f~--~dm~~~~~~ADLvIs---RaGa~Ti~E 267 (357)
T COG0707 198 LNDLVPEALAKLANRIQVIHQTGKN-DLEELKSAYNELGV----VRVLPFI--DDMAALLAAADLVIS---RAGALTIAE 267 (357)
T ss_pred HHHHHHHHHHHhhhCeEEEEEcCcc-hHHHHHHHHhhcCc----EEEeeHH--hhHHHHHHhccEEEe---CCcccHHHH
Confidence 4444444444444 46676665432 24455555555443 7788888 679999999999995 367899999
Q ss_pred HHHcCCCeeecCCCcc---hhhhHHHHHhhcCCCcceec---CHHHHHHHHHHhhcCCC
Q psy15362 148 VLWTGTPVVTLPGETL---ASRVAASQLATLGCPELIAR---THKEYQDIAIRLGTDRD 200 (200)
Q Consensus 148 Ama~G~PVV~~~g~~~---~~r~~~~~~~~~g~~~~ia~---~~~~yv~~a~~l~~d~e 200 (200)
..++|+|+|..+-... ....-+..+...|-..++.+ +.+.+.+...++.++||
T Consensus 268 ~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~ 326 (357)
T COG0707 268 LLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPE 326 (357)
T ss_pred HHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHH
Confidence 9999999998643322 22233445555566555553 35677777777776653
No 103
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.33 E-value=7.5e-06 Score=71.38 Aligned_cols=169 Identities=19% Similarity=0.170 Sum_probs=104.8
Q ss_pred eeEeeeCeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEE-EeCCC----CCCCHHHHHHHHHHHHHCC
Q psy15362 7 VQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYC-NFNQL----YKIDPSTLQMWVNVLKAVP 81 (200)
Q Consensus 7 ~~~~~~gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~-~~~r~----~K~~~~~l~a~~~i~~~~p 81 (200)
+.+.+-|+|+.+-+... ..+...|+.+ ++++..+++ ..|+. .+..+.+++++.++.++.|
T Consensus 153 ~~~~~VGHPl~d~~~~~--------------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p 217 (373)
T PF02684_consen 153 VPVTYVGHPLLDEVKPE--------------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRP 217 (373)
T ss_pred CCeEEECCcchhhhccC--------------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66777777765554322 1124556677 888776544 44532 2455889999999999999
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec-CC
Q psy15362 82 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL-PG 160 (200)
Q Consensus 82 ~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~-~g 160 (200)
+.++++........+.+++..+..+.. -.+.+.. .+-..+++.||+.+.+| |++++|++.+|+|.|.. .-
T Consensus 218 ~l~fvvp~a~~~~~~~i~~~~~~~~~~-~~~~~~~----~~~~~~m~~ad~al~~S----GTaTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 218 DLQFVVPVAPEVHEELIEEILAEYPPD-VSIVIIE----GESYDAMAAADAALAAS----GTATLEAALLGVPMVVAYKV 288 (373)
T ss_pred CeEEEEecCCHHHHHHHHHHHHhhCCC-CeEEEcC----CchHHHHHhCcchhhcC----CHHHHHHHHhCCCEEEEEcC
Confidence 999998764322334466666665553 3333322 13344678999998764 69999999999999974 44
Q ss_pred CcchhhhHHHHHh--hcCC----------Ccceec--CHHHHHHHHHHhhcCC
Q psy15362 161 ETLASRVAASQLA--TLGC----------PELIAR--THKEYQDIAIRLGTDR 199 (200)
Q Consensus 161 ~~~~~r~~~~~~~--~~g~----------~~~ia~--~~~~yv~~a~~l~~d~ 199 (200)
...--.++..+++ ..|+ ||++.+ +++...+.+..++.|+
T Consensus 289 ~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~ 341 (373)
T PF02684_consen 289 SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENP 341 (373)
T ss_pred cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCH
Confidence 3322222322221 2233 455542 5667777777777765
No 104
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.28 E-value=4.6e-05 Score=66.27 Aligned_cols=135 Identities=10% Similarity=0.050 Sum_probs=79.1
Q ss_pred eeEeeeCeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCC-CEEEEEeCCCC--CC--CHHHHHHHHHHHHHCC
Q psy15362 7 VQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPED-AIVYCNFNQLY--KI--DPSTLQMWVNVLKAVP 81 (200)
Q Consensus 7 ~~~~~~gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~-~~v~~~~~r~~--K~--~~~~l~a~~~i~~~~p 81 (200)
-+|.++|-+.-+-+..-.. + .....++++|++.+ .++++...+.. +. .+.+.+.+..+.+...
T Consensus 167 ~~i~~tG~~~iD~l~~~~~----------~--~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~ 234 (365)
T TIGR03568 167 DRVFNVGSPGLDNILSLDL----------L--SKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNK 234 (365)
T ss_pred CcEEEECCcHHHHHHhhhc----------c--CHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhcc
Confidence 4677888775444432110 0 12456678898743 56555555532 22 2344444454544333
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHcCC-CCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 82 NSILWLLKFPAVGEANIQATAQALGL-DQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 82 ~~~l~ivG~~~~~~~~l~~~~~~~gl-~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
+..+++-.. .+..+.+++.++++.- . ++|.+++.+++.++..+++.||+++.-|+ || +.||.++|+|||+..
T Consensus 235 ~~~vi~P~~-~p~~~~i~~~i~~~~~~~-~~v~l~~~l~~~~~l~Ll~~a~~vitdSS--gg--i~EA~~lg~Pvv~l~ 307 (365)
T TIGR03568 235 NYIFTYPNA-DAGSRIINEAIEEYVNEH-PNFRLFKSLGQERYLSLLKNADAVIGNSS--SG--IIEAPSFGVPTINIG 307 (365)
T ss_pred CCEEEEeCC-CCCchHHHHHHHHHhcCC-CCEEEECCCChHHHHHHHHhCCEEEEcCh--hH--HHhhhhcCCCEEeec
Confidence 343322111 1333334433343321 3 78999999999999999999999995432 22 389999999999865
No 105
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.15 E-value=6.5e-05 Score=65.40 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=76.8
Q ss_pred CCCEEEEEeCCCC-CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccc
Q psy15362 51 EDAIVYCNFNQLY-KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 129 (200)
Q Consensus 51 ~~~~v~~~~~r~~-K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~ 129 (200)
.+.+++++.|+.. +....+.+.+.+.++..+.-.++.+|.. .... ..+. ++|++.+++|..++ |..
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~-~~~~--------~~~~-~~v~~~~~~p~~~l---l~~ 304 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWG-GLGA--------EDLP-DNVRVVDFVPHDWL---LPR 304 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCc-cccc--------cCCC-CceEEeCCCCHHHH---hhh
Confidence 3457788888753 3445566666655555543334445532 2111 2454 89999999986654 578
Q ss_pred ccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceec---CHHHHHHHHHHhhc
Q psy15362 130 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THKEYQDIAIRLGT 197 (200)
Q Consensus 130 aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~---~~~~yv~~a~~l~~ 197 (200)
||+++. .+|..|+.||+++|+|+|..+-..- ...-+..+...|..-.+.. +.++..+...++++
T Consensus 305 ~d~~I~---hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 305 CAAVVH---HGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGPALDPRELTAERLAAALRRLLD 371 (401)
T ss_pred hheeee---cCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhC
Confidence 999994 3566899999999999998743211 1111223344455433332 45555554444443
No 106
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.07 E-value=2.8e-05 Score=65.20 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=63.7
Q ss_pred EEEEEeCCC--CCCCHHHHHHHHHHHHHCCCcEE-EEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccc
Q psy15362 54 IVYCNFNQL--YKIDPSTLQMWVNVLKAVPNSIL-WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA 130 (200)
Q Consensus 54 ~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~~~l-~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~a 130 (200)
.++.++|.. .+....+++++.++ .++.++ +++|.+.+..+++++.++. . .++.+.+++ +++..+|..|
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~---~~~~~i~vv~G~~~~~~~~l~~~~~~---~-~~i~~~~~~--~~m~~lm~~a 242 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAES---QINISITLVTGSSNPNLDELKKFAKE---Y-PNIILFIDV--ENMAELMNEA 242 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhcc---ccCceEEEEECCCCcCHHHHHHHHHh---C-CCEEEEeCH--HHHHHHHHHC
Confidence 455555543 33345566666543 233333 3566543556778887765 2 578898888 5788899999
Q ss_pred cEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 131 DVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 131 Dv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
|+++.+ +|.|+.|++++|+|+|+.+
T Consensus 243 Dl~Is~----~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 243 DLAIGA----AGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred CEEEEC----CchHHHHHHHcCCCEEEEE
Confidence 999974 5689999999999999853
No 107
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.01 E-value=8.4e-05 Score=68.65 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=81.7
Q ss_pred CCCCCEEEEEeCCC--CCCCHHHHHHHHHHHH--HC--CCcEEEEEcCCccc-------HHHHHHHHHHcCCCCCcEEEe
Q psy15362 49 LPEDAIVYCNFNQL--YKIDPSTLQMWVNVLK--AV--PNSILWLLKFPAVG-------EANIQATAQALGLDQHRILFS 115 (200)
Q Consensus 49 l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~--~~--p~~~l~ivG~~~~~-------~~~l~~~~~~~gl~~~rv~f~ 115 (200)
++++.++++.+.|+ +|+.+.+++.+.++.+ +. ...++++.|.+.+. ...+.+++++.... +||.|+
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~-~kv~f~ 463 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFR-GRIVFL 463 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCC-CCEEEE
Confidence 45677888999986 6999988888887764 32 35899999975443 23344455543454 899997
Q ss_pred ccCCHHHHHhhcccccEEEe-CCC-CC-CchHHHHHHHcCCCeeec-CCC
Q psy15362 116 NVAAKEEHVRRGQLADVCLD-TPL-CN-GHTTSMDVLWTGTPVVTL-PGE 161 (200)
Q Consensus 116 g~~~~~~~~~~~~~aDv~l~-~~~-~~-~g~~~lEAma~G~PVV~~-~g~ 161 (200)
-.-+..--..+++.||+++. |+. +| +|++=+=||.-|.+.++. +|.
T Consensus 464 ~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~ 513 (601)
T TIGR02094 464 ENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGW 513 (601)
T ss_pred cCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCc
Confidence 76654333446899999999 775 76 699999999999999985 543
No 108
>PLN03004 UDP-glycosyltransferase
Probab=97.91 E-value=0.00041 Score=62.11 Aligned_cols=101 Identities=15% Similarity=0.280 Sum_probs=70.5
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc------cHHH-HH-HHHHHcCCCCCcEEEeccCCHHH
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV------GEAN-IQ-ATAQALGLDQHRILFSNVAAKEE 122 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~------~~~~-l~-~~~~~~gl~~~rv~f~g~~~~~~ 122 (200)
+..++|+++|......+.-++.++.-++..+..-++.+..... ..+. +- .+.++ +....+++.+|+|..+
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er--~~~~g~~v~~W~PQ~~ 346 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSR--TEDKGMVVKSWAPQVP 346 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHh--ccCCcEEEEeeCCHHH
Confidence 4579999999987777778888888888888877777763210 0011 11 11111 1115678889999877
Q ss_pred HHhhcccccE--EEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 123 HVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 123 ~~~~~~~aDv--~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
++ +.+++ ||. ..|.++++||+++|+|+|+.+
T Consensus 347 iL---~H~~v~~FvT---H~G~nS~lEal~~GVP~v~~P 379 (451)
T PLN03004 347 VL---NHKAVGGFVT---HCGWNSILEAVCAGVPMVAWP 379 (451)
T ss_pred Hh---CCCccceEec---cCcchHHHHHHHcCCCEEecc
Confidence 65 57777 764 356689999999999999975
No 109
>KOG2941|consensus
Probab=97.86 E-value=0.00036 Score=59.80 Aligned_cols=140 Identities=16% Similarity=0.087 Sum_probs=98.4
Q ss_pred CCCCCEEEEEeCCC--CCCCHHHHHHHHHH-----HH--HCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEE-eccC
Q psy15362 49 LPEDAIVYCNFNQL--YKIDPSTLQMWVNV-----LK--AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILF-SNVA 118 (200)
Q Consensus 49 l~~~~~v~~~~~r~--~K~~~~~l~a~~~i-----~~--~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f-~g~~ 118 (200)
+++...++++--.+ .....-+++|+..- .+ ..|+...+|-|. |+.++.+.+.++++.+. +|.+ +.+.
T Consensus 251 ~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGK-GPlkE~Y~~~I~~~~~~--~v~~~tpWL 327 (444)
T KOG2941|consen 251 LPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGK-GPLKEKYSQEIHEKNLQ--HVQVCTPWL 327 (444)
T ss_pred ccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCC-CchhHHHHHHHHHhccc--ceeeeeccc
Confidence 34444455544443 34555677776621 11 257777777765 68899999999999984 5555 7888
Q ss_pred CHHHHHhhcccccEEE--eCCCCC--CchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCHHHHHHHHHH
Q psy15362 119 AKEEHVRRGQLADVCL--DTPLCN--GHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIR 194 (200)
Q Consensus 119 ~~~~~~~~~~~aDv~l--~~~~~~--~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~ 194 (200)
..+|++.++..||+-| .+|+.+ -++.+++-.-||+||++.+-...-+ +-.-|-++++.+|.+++.+...-
T Consensus 328 ~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~E------LVkh~eNGlvF~Ds~eLa~ql~~ 401 (444)
T KOG2941|consen 328 EAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDE------LVKHGENGLVFEDSEELAEQLQM 401 (444)
T ss_pred ccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHH------HHhcCCCceEeccHHHHHHHHHH
Confidence 8899999999999874 566544 2789999999999999976543322 22347788888888888887766
Q ss_pred hhc
Q psy15362 195 LGT 197 (200)
Q Consensus 195 l~~ 197 (200)
|.+
T Consensus 402 lf~ 404 (444)
T KOG2941|consen 402 LFK 404 (444)
T ss_pred HHh
Confidence 655
No 110
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.86 E-value=0.00062 Score=60.97 Aligned_cols=103 Identities=12% Similarity=0.258 Sum_probs=69.9
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCc-ccHH---HHHHHHHHcCCCCCcEEEeccCCHHHHHhh
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPA-VGEA---NIQATAQALGLDQHRILFSNVAAKEEHVRR 126 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~-~~~~---~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~ 126 (200)
++.++|+++|...+....-++.++.-++..+..-++.+..+. ...+ .+-.-..+ .+. +|..+.+|+|..+++.
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~e-r~~-~~g~v~~w~PQ~~iL~- 339 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSK-IIS-GRGYIVKWAPQKEVLS- 339 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHH-hcc-CCeEEEccCCHHHHhC-
Confidence 457999999998877777777778777887777777775221 0011 11111111 144 7788889999888764
Q ss_pred cccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 127 GQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
...+..|+.. +|-++++||+++|+|+|+.+
T Consensus 340 h~~v~~fvtH---~G~nS~~Ea~~~GvP~l~~P 369 (451)
T PLN02410 340 HPAVGGFWSH---CGWNSTLESIGEGVPMICKP 369 (451)
T ss_pred CCccCeeeec---CchhHHHHHHHcCCCEEecc
Confidence 2345668753 45689999999999999975
No 111
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.80 E-value=0.0006 Score=61.42 Aligned_cols=102 Identities=19% Similarity=0.321 Sum_probs=66.2
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCccc----HHHHH-HHHHHcCCCCCcEEEeccCCHHHHHh
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVG----EANIQ-ATAQALGLDQHRILFSNVAAKEEHVR 125 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~----~~~l~-~~~~~~gl~~~rv~f~g~~~~~~~~~ 125 (200)
++.++|+++|.........++.++.-++..+.--++.++..... ...+- ...+ .+. +|..+.+|+|..+++.
T Consensus 279 ~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~e--r~~-~rg~v~~w~PQ~~iL~ 355 (475)
T PLN02167 279 ESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMD--RVM-GRGLVCGWAPQVEILA 355 (475)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHH--Hhc-cCeeeeccCCHHHHhc
Confidence 45689999998765555566777777777776556666532110 01111 1111 133 5667889999877664
Q ss_pred hcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 126 RGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 126 ~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
...++.||.. +|-++++||+++|+|+|+.+
T Consensus 356 -h~~vg~fvtH---~G~nS~~Eal~~GvP~l~~P 385 (475)
T PLN02167 356 -HKAIGGFVSH---CGWNSVLESLWFGVPIATWP 385 (475)
T ss_pred -CcccCeEEee---CCcccHHHHHHcCCCEEecc
Confidence 3346678853 45689999999999999974
No 112
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.80 E-value=0.00026 Score=63.66 Aligned_cols=101 Identities=13% Similarity=0.319 Sum_probs=63.6
Q ss_pred hhhhcCC-CCCCEEEEEeCCCCCC-CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCH
Q psy15362 43 SRQQYGL-PEDAIVYCNFNQLYKI-DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK 120 (200)
Q Consensus 43 ~R~~l~l-~~~~~v~~~~~r~~K~-~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~ 120 (200)
+...+.- .++.+|+.++|...+. .+..++.+.+.+++.|+..++-..+ .... .+. +++++..|+|.
T Consensus 266 ~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~--~~~~---------~l~-~n~~~~~W~PQ 333 (500)
T PF00201_consen 266 LWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEG--EPPE---------NLP-KNVLIVKWLPQ 333 (500)
T ss_dssp HHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETC--SHGC---------HHH-TTEEEESS--H
T ss_pred cchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccc--cccc---------ccc-ceEEEeccccc
Confidence 3333433 3557899999987643 4556888888899999854444432 1111 122 67899999998
Q ss_pred HHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 121 EEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 121 ~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
.+++. ....++|+. .+|.+++.||+++|+|+|+.+
T Consensus 334 ~~lL~-hp~v~~fit---HgG~~s~~Ea~~~gvP~l~~P 368 (500)
T PF00201_consen 334 NDLLA-HPRVKLFIT---HGGLNSTQEALYHGVPMLGIP 368 (500)
T ss_dssp HHHHT-STTEEEEEE---S--HHHHHHHHHCT--EEE-G
T ss_pred hhhhh-cccceeeee---ccccchhhhhhhccCCccCCC
Confidence 88764 345678885 356689999999999999974
No 113
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.78 E-value=0.0013 Score=59.80 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=67.9
Q ss_pred CCCEEEEEeCCCC---CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc
Q psy15362 51 EDAIVYCNFNQLY---KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG 127 (200)
Q Consensus 51 ~~~~v~~~~~r~~---K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~ 127 (200)
++.+++.+.|... +....+++.+.+.+++.|. +++...++ ...+ .++. ++|.+.+++|..+++. -
T Consensus 295 ~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~-~viw~~~~-~~~~--------~~~p-~Nv~i~~w~Pq~~lL~-h 362 (507)
T PHA03392 295 TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPY-NVLWKYDG-EVEA--------INLP-ANVLTQKWFPQRAVLK-H 362 (507)
T ss_pred CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCC-eEEEEECC-CcCc--------ccCC-CceEEecCCCHHHHhc-C
Confidence 3358888888754 3456788888888888885 55554332 1111 2454 9999999999887653 2
Q ss_pred ccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 128 QLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 128 ~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
..+++|+.. +|..++.||+++|+|+|+.+
T Consensus 363 p~v~~fItH---GG~~s~~Eal~~GvP~v~iP 391 (507)
T PHA03392 363 KNVKAFVTQ---GGVQSTDEAIDALVPMVGLP 391 (507)
T ss_pred CCCCEEEec---CCcccHHHHHHcCCCEEECC
Confidence 569999953 56689999999999999975
No 114
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.76 E-value=0.00054 Score=57.66 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=77.1
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccccc
Q psy15362 52 DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD 131 (200)
Q Consensus 52 ~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aD 131 (200)
...+++++|..... .+ .+.+++.|+..++++|.. .... .. ++|.+.++.. .++..++..||
T Consensus 192 ~~~iLv~~gg~~~~--~~----~~~l~~~~~~~~~v~g~~-~~~~----------~~-~ni~~~~~~~-~~~~~~m~~ad 252 (318)
T PF13528_consen 192 EPKILVYFGGGGPG--DL----IEALKALPDYQFIVFGPN-AADP----------RP-GNIHVRPFST-PDFAELMAAAD 252 (318)
T ss_pred CCEEEEEeCCCcHH--HH----HHHHHhCCCCeEEEEcCC-cccc----------cC-CCEEEeecCh-HHHHHHHHhCC
Confidence 34566666655322 22 334555788888888642 1000 13 7888888763 46777889999
Q ss_pred EEEeCCCCCCchHHHHHHHcCCCeeecCCCcc-hhhhHHHHHhhcCCCcceec---CHHHHHHHH
Q psy15362 132 VCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL-ASRVAASQLATLGCPELIAR---THKEYQDIA 192 (200)
Q Consensus 132 v~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~-~~r~~~~~~~~~g~~~~ia~---~~~~yv~~a 192 (200)
+++.. +|-+++.||+++|+|++..+-... ....-+..++.+|+...+.. +.+.+.+..
T Consensus 253 ~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l 314 (318)
T PF13528_consen 253 LVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFL 314 (318)
T ss_pred EEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHH
Confidence 99965 345779999999999998765433 34445667888898877642 445554444
No 115
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=97.76 E-value=6.6e-05 Score=68.49 Aligned_cols=39 Identities=13% Similarity=-0.005 Sum_probs=28.2
Q ss_pred HHHhhcccccEEEeCCCCC-CchHHHHHHHcCCCeeecCC
Q psy15362 122 EHVRRGQLADVCLDTPLCN-GHTTSMDVLWTGTPVVTLPG 160 (200)
Q Consensus 122 ~~~~~~~~aDv~l~~~~~~-~g~~~lEAma~G~PVV~~~g 160 (200)
++..++..||+-|.||.|| .|.|.+|+.++|+|.||++=
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnL 501 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNL 501 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETT
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccc
Confidence 4455567999999999887 59999999999999999863
No 116
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.75 E-value=3.3e-05 Score=53.49 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=43.2
Q ss_pred EEeCCCCCC-chHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCHHHHHHHHHHhhcCCC
Q psy15362 133 CLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 133 ~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d~e 200 (200)
+|.++...+ +..++|+||||+|||+..-..+.. + -..|...+..++.+++.+....+++||+
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~-----~-~~~~~~~~~~~~~~el~~~i~~ll~~~~ 64 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPVISDDSPGLRE-----I-FEDGEHIITYNDPEELAEKIEYLLENPE 64 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeEEECChHHHHH-----H-cCCCCeEEEECCHHHHHHHHHHHHCCHH
Confidence 456655544 688999999999999965322111 1 1124444666899999999999998874
No 117
>PLN02210 UDP-glucosyl transferase
Probab=97.72 E-value=0.0014 Score=58.69 Aligned_cols=98 Identities=15% Similarity=0.315 Sum_probs=67.9
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc--cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcc
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV--GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ 128 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~--~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~ 128 (200)
+..++|+++|...+.....++.++.-++..+.-.++.++.... ..+.+++..+ . +|..+.+++|..+++ +
T Consensus 268 ~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~----~-~~g~v~~w~PQ~~iL---~ 339 (456)
T PLN02210 268 RSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVK----E-GQGVVLEWSPQEKIL---S 339 (456)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhcc----C-CCeEEEecCCHHHHh---c
Confidence 3569999999987777888888888888877666666663211 1122222221 2 555678999987765 4
Q ss_pred ccc--EEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 129 LAD--VCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 129 ~aD--v~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
.+. .|+.. +|-++++||+++|+|+|+.+
T Consensus 340 h~~vg~FitH---~G~nS~~Eai~~GVP~v~~P 369 (456)
T PLN02210 340 HMAISCFVTH---CGWNSTIETVVAGVPVVAYP 369 (456)
T ss_pred CcCcCeEEee---CCcccHHHHHHcCCCEEecc
Confidence 454 77753 45589999999999999975
No 118
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.69 E-value=0.0011 Score=59.79 Aligned_cols=101 Identities=14% Similarity=0.282 Sum_probs=68.8
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCccc---H----HHHHHHHHHcCCCCCcEEEeccCCHHH
Q psy15362 50 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVG---E----ANIQATAQALGLDQHRILFSNVAAKEE 122 (200)
Q Consensus 50 ~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~---~----~~l~~~~~~~gl~~~rv~f~g~~~~~~ 122 (200)
++..++|+++|......+..++.++.-+++.+.-.++.++..... . +.+.+.++ . ..+++.+|+|..+
T Consensus 281 ~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~----~-~g~~v~~w~PQ~~ 355 (477)
T PLN02863 281 EDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA----G-RGLVIRGWAPQVA 355 (477)
T ss_pred CCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc----c-CCEEecCCCCHHH
Confidence 345789999998766666667777777777777667777632110 0 11222121 2 5678889999877
Q ss_pred HHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 123 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 123 ~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
++. -..+++|+.. +|.++++||+++|+|+|+.+
T Consensus 356 vL~-h~~v~~fvtH---~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 356 ILS-HRAVGAFLTH---CGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred Hhc-CCCcCeEEec---CCchHHHHHHHcCCCEEeCC
Confidence 654 2347888853 56689999999999999974
No 119
>PLN02562 UDP-glycosyltransferase
Probab=97.69 E-value=0.0014 Score=58.69 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=66.9
Q ss_pred CCCEEEEEeCCCC-CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccc
Q psy15362 51 EDAIVYCNFNQLY-KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 129 (200)
Q Consensus 51 ~~~~v~~~~~r~~-K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~ 129 (200)
++.++|.++|... ...+..++.++..+++.+.--++.+..+ . .+.+-+-..+ .+. +|+.+.+|+|..+++. ...
T Consensus 272 ~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~-~-~~~l~~~~~~-~~~-~~~~v~~w~PQ~~iL~-h~~ 346 (448)
T PLN02562 272 PNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV-W-REGLPPGYVE-RVS-KQGKVVSWAPQLEVLK-HQA 346 (448)
T ss_pred CCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC-c-hhhCCHHHHH-Hhc-cCEEEEecCCHHHHhC-CCc
Confidence 3468999998864 5567788888888888887556666431 1 1111111111 133 7888899999887653 122
Q ss_pred ccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 130 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 130 aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
+-.||. .+|-++++||+++|+|+|+.+
T Consensus 347 v~~fvt---H~G~nS~~Eal~~GvP~l~~P 373 (448)
T PLN02562 347 VGCYLT---HCGWNSTMEAIQCQKRLLCYP 373 (448)
T ss_pred cceEEe---cCcchhHHHHHHcCCCEEeCC
Confidence 345664 356689999999999999974
No 120
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.68 E-value=0.0016 Score=58.85 Aligned_cols=101 Identities=14% Similarity=0.307 Sum_probs=68.1
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCC--c---------------cc-HHHH-HHHHHHcCCCCCc
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFP--A---------------VG-EANI-QATAQALGLDQHR 111 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~--~---------------~~-~~~l-~~~~~~~gl~~~r 111 (200)
++.++|+++|........-++.++.-+++.+.-.+|.+..+ + .. .+.+ +.+.++ +....
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR--~~~rg 339 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSR--THDRG 339 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHH--hcCCC
Confidence 46799999998877777778888888888898888888411 0 00 0001 111111 11135
Q ss_pred EEEeccCCHHHHHhhcccccE--EEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 112 ILFSNVAAKEEHVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 112 v~f~g~~~~~~~~~~~~~aDv--~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
+++.+|+|..+++. ...+ |+. .+|.++++||+++|+|+|+.+
T Consensus 340 ~vv~~W~PQ~~iL~---h~~vg~Fit---H~G~nS~~Eal~~GVP~l~~P 383 (481)
T PLN02992 340 FVVPSWAPQAEILA---HQAVGGFLT---HCGWSSTLESVVGGVPMIAWP 383 (481)
T ss_pred EEEeecCCHHHHhC---CcccCeeEe---cCchhHHHHHHHcCCCEEecC
Confidence 78889999877653 4444 664 356689999999999999975
No 121
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.67 E-value=0.0022 Score=57.48 Aligned_cols=94 Identities=11% Similarity=0.227 Sum_probs=63.7
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccc
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA 130 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~a 130 (200)
+..++|+++|.........++.+..-++..+. .++.+..+ + ...+.+. .. +++.+.++.|..+++. ..
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~-~~lw~~~~-~-~~~~~~~-----~~-~~~~v~~w~pQ~~iL~---h~ 340 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGV-RFLWVARG-E-ASRLKEI-----CG-DMGLVVPWCDQLKVLC---HS 340 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCC-CEEEEEcC-c-hhhHhHh-----cc-CCEEEeccCCHHHHhc---cC
Confidence 45689999988766666677777777777654 55544322 2 1122221 22 6788889999887664 44
Q ss_pred cE--EEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 131 DV--CLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 131 Dv--~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
++ ||. .+|.++++||+++|+|+|+.+
T Consensus 341 ~v~~fvt---HgG~nS~~eal~~GvP~l~~P 368 (459)
T PLN02448 341 SVGGFWT---HCGWNSTLEAVFAGVPMLTFP 368 (459)
T ss_pred ccceEEe---cCchhHHHHHHHcCCCEEecc
Confidence 44 774 356689999999999999975
No 122
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.65 E-value=0.0002 Score=61.94 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=63.1
Q ss_pred CCCCEEEEEeCCCCCCC-----HHHHHHHHHHHHHCCCcEEEEEcCCc-ccHHHHHHHHHHcCCCCCcEEEeccCCHHHH
Q psy15362 50 PEDAIVYCNFNQLYKID-----PSTLQMWVNVLKAVPNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVAAKEEH 123 (200)
Q Consensus 50 ~~~~~v~~~~~r~~K~~-----~~~l~a~~~i~~~~p~~~l~ivG~~~-~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~ 123 (200)
..+.+++++..+..... ..+.+++.++.+. ++..+++..... .....+.+.++++ +++++...+++.++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~----~~v~~~~~l~~~~~ 252 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKY----DNVRLIEPLGYEEY 252 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-----TTEEEE----HHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhccc----CCEEEECCCCHHHH
Confidence 55667777776654433 3566777777777 788888876421 2234454444442 48999999999999
Q ss_pred HhhcccccEEEeCCCCCCchHHH-HHHHcCCCeeecC
Q psy15362 124 VRRGQLADVCLDTPLCNGHTTSM-DVLWTGTPVVTLP 159 (200)
Q Consensus 124 ~~~~~~aDv~l~~~~~~~g~~~l-EAma~G~PVV~~~ 159 (200)
..+++.|+++|.-| | .+. ||.++|+|||..+
T Consensus 253 l~ll~~a~~vvgdS----s-GI~eEa~~lg~P~v~iR 284 (346)
T PF02350_consen 253 LSLLKNADLVVGDS----S-GIQEEAPSLGKPVVNIR 284 (346)
T ss_dssp HHHHHHESEEEESS----H-HHHHHGGGGT--EEECS
T ss_pred HHHHhcceEEEEcC----c-cHHHHHHHhCCeEEEec
Confidence 99999999998533 3 566 9999999999974
No 123
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.65 E-value=0.0016 Score=58.21 Aligned_cols=100 Identities=17% Similarity=0.413 Sum_probs=63.7
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHH-HHHHHcCCCCCcEEEeccCCHHHHHhhcc
Q psy15362 50 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQ-ATAQALGLDQHRILFSNVAAKEEHVRRGQ 128 (200)
Q Consensus 50 ~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~-~~~~~~gl~~~rv~f~g~~~~~~~~~~~~ 128 (200)
+++.++|+++|.........++.++.-+...| -++.+..+ . .+.+- ...++ +..+++.+.+|.|..+++. -.
T Consensus 262 ~~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~-~-~~~lp~~~~~~--~~~~~~~i~~W~PQ~~iL~-H~ 334 (449)
T PLN02173 262 PQGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRAS-E-ESKLPPGFLET--VDKDKSLVLKWSPQLQVLS-NK 334 (449)
T ss_pred CCCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEecc-c-hhcccchHHHh--hcCCceEEeCCCCHHHHhC-CC
Confidence 34569999999877766667777766565444 34555321 1 11111 11111 2127789899999877653 12
Q ss_pred cccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 129 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
....||. ..|.++++||+++|+|+|+.+
T Consensus 335 ~v~~Fvt---HcGwnS~~Eai~~GVP~l~~P 362 (449)
T PLN02173 335 AIGCFMT---HCGWNSTMEGLSLGVPMVAMP 362 (449)
T ss_pred ccceEEe---cCccchHHHHHHcCCCEEecC
Confidence 3447774 356799999999999999975
No 124
>PLN02555 limonoid glucosyltransferase
Probab=97.62 E-value=0.0024 Score=57.61 Aligned_cols=101 Identities=17% Similarity=0.295 Sum_probs=65.5
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCc----ccHHHHH-HHHHHcCCCCCcEEEeccCCHHHHHhh
Q psy15362 52 DAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPA----VGEANIQ-ATAQALGLDQHRILFSNVAAKEEHVRR 126 (200)
Q Consensus 52 ~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~----~~~~~l~-~~~~~~gl~~~rv~f~g~~~~~~~~~~ 126 (200)
..++|+++|.........++.++.-+++.+.--++.+.... .....+- .... .+. +|+.+.+|+|..+++.
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~--~~~-~~g~v~~W~PQ~~iL~- 352 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE--KAG-DKGKIVQWCPQEKVLA- 352 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh--hcC-CceEEEecCCHHHHhC-
Confidence 46899999987655555556666656666654455554210 0001111 1222 244 7888899999877664
Q ss_pred cccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 127 GQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
...+..|+.. +|.++++||+++|+|+|+.+
T Consensus 353 H~~v~~FvtH---~G~nS~~Eai~~GVP~l~~P 382 (480)
T PLN02555 353 HPSVACFVTH---CGWNSTMEALSSGVPVVCFP 382 (480)
T ss_pred CCccCeEEec---CCcchHHHHHHcCCCEEeCC
Confidence 3567888853 56689999999999999975
No 125
>PLN00164 glucosyltransferase; Provisional
Probab=97.58 E-value=0.0028 Score=57.17 Aligned_cols=98 Identities=17% Similarity=0.388 Sum_probs=63.3
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc-------c---H----HHHHHHHHHcCCCCCcEEEec
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV-------G---E----ANIQATAQALGLDQHRILFSN 116 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~-------~---~----~~l~~~~~~~gl~~~rv~f~g 116 (200)
+..++|+++|........-++.++.-++..+.--+|++..... + . +.+.+.++. ..+++.+
T Consensus 271 ~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-----~g~~v~~ 345 (480)
T PLN00164 271 PASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKG-----RGLVWPT 345 (480)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcC-----CCeEEee
Confidence 4568999999876555555777777777777666667763210 0 0 111111111 2366779
Q ss_pred cCCHHHHHhhccccc--EEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 117 VAAKEEHVRRGQLAD--VCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 117 ~~~~~~~~~~~~~aD--v~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
|.|..+++. ..+ .||. .+|.++++||+++|+|+|+.+
T Consensus 346 w~PQ~~iL~---h~~vg~fvt---H~GwnS~~Eai~~GVP~l~~P 384 (480)
T PLN00164 346 WAPQKEILA---HAAVGGFVT---HCGWNSVLESLWHGVPMAPWP 384 (480)
T ss_pred cCCHHHHhc---CcccCeEEe---ecccchHHHHHHcCCCEEeCC
Confidence 999877653 444 5664 345689999999999999975
No 126
>PLN02670 transferase, transferring glycosyl groups
Probab=97.57 E-value=0.0028 Score=57.07 Aligned_cols=100 Identities=10% Similarity=0.203 Sum_probs=66.8
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCC-cccH-------HHHHHHHHHcCCCCCcEEEeccCCHHH
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFP-AVGE-------ANIQATAQALGLDQHRILFSNVAAKEE 122 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~-~~~~-------~~l~~~~~~~gl~~~rv~f~g~~~~~~ 122 (200)
+..++|+++|......+.-++.++.-+++.+..-++.+... +... +.+.+.++. .-+++.+|+|..+
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~-----rG~vv~~W~PQ~~ 351 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKG-----RGMIHVGWVPQVK 351 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccC-----CCeEEeCcCCHHH
Confidence 35799999998877777778888888888888777776531 1100 111222221 1267789999877
Q ss_pred HHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 123 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 123 ~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
++. -.....|+. ..|.++++||+++|+|+|+.+
T Consensus 352 IL~-H~~v~~Fvt---HcGwnS~~Eai~~GVP~l~~P 384 (472)
T PLN02670 352 ILS-HESVGGFLT---HCGWNSVVEGLGFGRVLILFP 384 (472)
T ss_pred Hhc-Ccccceeee---cCCcchHHHHHHcCCCEEeCc
Confidence 653 123444774 356689999999999999975
No 127
>PLN02207 UDP-glycosyltransferase
Probab=97.56 E-value=0.0011 Score=59.69 Aligned_cols=102 Identities=18% Similarity=0.339 Sum_probs=71.0
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCccc-HHHH-HHHHHHcCCCCCcEEEeccCCHHHHHhhcc
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVG-EANI-QATAQALGLDQHRILFSNVAAKEEHVRRGQ 128 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~-~~~l-~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~ 128 (200)
+..++|+++|.........++.++.-++..+.--++.+...... .+.+ +....+ +. +|..+.+|.|..+++. -.
T Consensus 274 ~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er--~~-~~g~i~~W~PQ~~IL~-H~ 349 (468)
T PLN02207 274 EASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR--VS-GRGMICGWSPQVEILA-HK 349 (468)
T ss_pred CCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh--cC-CCeEEEEeCCHHHHhc-cc
Confidence 45799999999877777888888888888888777777632110 1111 112111 44 7778889999888764 23
Q ss_pred cccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 129 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
.+..|+.. .|-++++||+++|+|+|+.+
T Consensus 350 ~vg~FvTH---~GwnS~~Eai~~GVP~l~~P 377 (468)
T PLN02207 350 AVGGFVSH---CGWNSIVESLWFGVPIVTWP 377 (468)
T ss_pred ccceeeec---CccccHHHHHHcCCCEEecC
Confidence 45557743 45689999999999999975
No 128
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=0.00038 Score=60.36 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=73.1
Q ss_pred hhhhhhcCCCCCCEE-EEEeCCC----CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHH-HHHHcCCCCCcEEE
Q psy15362 41 ITSRQQYGLPEDAIV-YCNFNQL----YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQA-TAQALGLDQHRILF 114 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v-~~~~~r~----~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~-~~~~~gl~~~rv~f 114 (200)
...|++++++.+..+ ....|+. .+..+.|.+++.++.++.|+.++++--- +...+.++. ..+..... -.+++
T Consensus 176 ~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~-~~~~~~~~~~~~~~~~~~-~~~~~ 253 (381)
T COG0763 176 EAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLV-NAKYRRIIEEALKWEVAG-LSLIL 253 (381)
T ss_pred HHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecC-cHHHHHHHHHHhhccccC-ceEEe
Confidence 669999999987644 3444532 3456889999999999999999999643 233233433 33332221 23444
Q ss_pred eccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec
Q psy15362 115 SNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 115 ~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~ 158 (200)
.+.. -...+..||+.+..| |++++|++.+|+|.|..
T Consensus 254 ~~~~----~~~a~~~aD~al~aS----GT~tLE~aL~g~P~Vv~ 289 (381)
T COG0763 254 IDGE----KRKAFAAADAALAAS----GTATLEAALAGTPMVVA 289 (381)
T ss_pred cCch----HHHHHHHhhHHHHhc----cHHHHHHHHhCCCEEEE
Confidence 4433 333567999988764 69999999999999975
No 129
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.52 E-value=0.0017 Score=58.62 Aligned_cols=102 Identities=13% Similarity=0.195 Sum_probs=68.4
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc-----------cH-HHH-HHHHHHcCCCCCcEEEecc
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV-----------GE-ANI-QATAQALGLDQHRILFSNV 117 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~-----------~~-~~l-~~~~~~~gl~~~rv~f~g~ 117 (200)
++.++|+++|.........++.++.-+++.+.--++.++.... .. +.+ .....+ +. +|+.+.+|
T Consensus 273 ~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r--~~-~~g~v~~W 349 (481)
T PLN02554 273 PKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR--TK-DIGKVIGW 349 (481)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHH--hc-cCceEEee
Confidence 4568999999887666777888888778877755666642100 00 111 111111 33 77888899
Q ss_pred CCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 118 AAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 118 ~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
+|..+++. ...+..||. .+|-++++||+++|+|+|+.+
T Consensus 350 ~PQ~~iL~-H~~v~~Fvt---H~G~nS~~Ea~~~GVP~l~~P 387 (481)
T PLN02554 350 APQVAVLA-KPAIGGFVT---HCGWNSILESLWFGVPMAAWP 387 (481)
T ss_pred CCHHHHhC-CcccCcccc---cCccchHHHHHHcCCCEEecC
Confidence 99877763 256677774 355689999999999999975
No 130
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=97.51 E-value=0.00071 Score=64.15 Aligned_cols=112 Identities=16% Similarity=0.087 Sum_probs=80.3
Q ss_pred CCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHH--C--CCcEEEEEcCCcccH----H---HHHHHHHHcCCCCCcEEEe
Q psy15362 49 LPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKA--V--PNSILWLLKFPAVGE----A---NIQATAQALGLDQHRILFS 115 (200)
Q Consensus 49 l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~--~--p~~~l~ivG~~~~~~----~---~l~~~~~~~gl~~~rv~f~ 115 (200)
++++.+++|++.|. +|+.+.+++.+.++.+- . ...++++.|.+.+.. + .+.++++..... +||.|+
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~-~kVvfl 552 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFR-GRIVFL 552 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCC-CcEEEE
Confidence 45677788998886 69998888887766441 1 248999999654322 2 333444443554 899998
Q ss_pred ccCCHHHHHhhcccccEEEeCCC--CC-CchHHHHHHHcCCCeeec-CCC
Q psy15362 116 NVAAKEEHVRRGQLADVCLDTPL--CN-GHTTSMDVLWTGTPVVTL-PGE 161 (200)
Q Consensus 116 g~~~~~~~~~~~~~aDv~l~~~~--~~-~g~~~lEAma~G~PVV~~-~g~ 161 (200)
..-+..--..+++.||+++.++. +| +|++=+=||.-|.+-++. +|.
T Consensus 553 e~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGw 602 (778)
T cd04299 553 EDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGW 602 (778)
T ss_pred cCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCc
Confidence 87764444446899999999985 66 599999999999999975 553
No 131
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.46 E-value=0.0033 Score=55.60 Aligned_cols=132 Identities=17% Similarity=0.295 Sum_probs=81.3
Q ss_pred CCCC-CEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc
Q psy15362 49 LPED-AIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG 127 (200)
Q Consensus 49 l~~~-~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~ 127 (200)
++.| .+++.+.|...-. ..+++.+.+.+...+ .++++-.. + .+..+ .++. ++++..+++|..++ +
T Consensus 233 ~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~-~~vi~~~~-~-~~~~~------~~~p-~n~~v~~~~p~~~~---l 298 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA-VELLAIVLEALADLD-VRVIVSLG-G-ARDTL------VNVP-DNVIVADYVPQLEL---L 298 (406)
T ss_pred hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCC-cEEEEecc-c-ccccc------ccCC-CceEEecCCCHHHH---h
Confidence 4554 4667777765422 677787777777664 56655442 1 11122 2565 99999999997664 5
Q ss_pred ccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCccee---cCHHHHHHHHHHhhcC
Q psy15362 128 QLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---RTHKEYQDIAIRLGTD 198 (200)
Q Consensus 128 ~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia---~~~~~yv~~a~~l~~d 198 (200)
..||+++.. +|..++.||+..|+|+|..+... -.-.-+.-++..|....+- .+++...+...++++|
T Consensus 299 ~~ad~vI~h---GG~gtt~eaL~~gvP~vv~P~~~-DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~ 368 (406)
T COG1819 299 PRADAVIHH---GGAGTTSEALYAGVPLVVIPDGA-DQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLAD 368 (406)
T ss_pred hhcCEEEec---CCcchHHHHHHcCCCEEEecCCc-chhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcC
Confidence 799999964 55688999999999999986541 1111223344556554443 3444444444444443
No 132
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.44 E-value=0.0053 Score=55.08 Aligned_cols=100 Identities=18% Similarity=0.353 Sum_probs=70.0
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc-------c-HHH---HHHHHHHcCCCCCcEEEeccCC
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV-------G-EAN---IQATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~-------~-~~~---l~~~~~~~gl~~~rv~f~g~~~ 119 (200)
++.++|+++|........-++.++.-+++.+...++.+..... . .+. .+.+.++ +. +|..+.+|+|
T Consensus 260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~--~~-~~g~v~~W~P 336 (455)
T PLN02152 260 ESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE--LE-EVGMIVSWCS 336 (455)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh--cc-CCeEEEeeCC
Confidence 3579999999987777777888888888888877887764210 0 001 1222222 44 7788889999
Q ss_pred HHHHHhhccccc--EEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 120 KEEHVRRGQLAD--VCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 120 ~~~~~~~~~~aD--v~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
..+++ +... .|+. .+|.++++||+++|+|+|+.+
T Consensus 337 Q~~iL---~h~~vg~fvt---H~G~nS~~Ea~~~GvP~l~~P 372 (455)
T PLN02152 337 QIEVL---RHRAVGCFVT---HCGWSSSLESLVLGVPVVAFP 372 (455)
T ss_pred HHHHh---CCcccceEEe---eCCcccHHHHHHcCCCEEecc
Confidence 87765 4555 4664 356789999999999999975
No 133
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.43 E-value=0.0053 Score=55.43 Aligned_cols=102 Identities=14% Similarity=0.238 Sum_probs=62.5
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCccc---HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVG---EANIQATAQALGLDQHRILFSNVAAKEEHVRRG 127 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~---~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~ 127 (200)
+..++|+++|........-+..+..-++..+.-.++.++..... ...+-+-..+.-.. .++++.+|+|..+++
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~-~g~~v~~w~PQ~~iL--- 359 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKG-KGLIIRGWAPQVLIL--- 359 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhcc-CCEEEecCCCHHHHh---
Confidence 45799999998765544444444455666666666667642110 01111111111112 678889999987765
Q ss_pred ccccE--EEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 128 QLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 128 ~~aDv--~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
..+++ |+.. +|.++++||+++|+|+|+.+
T Consensus 360 ~h~~v~~fvtH---~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 360 DHQATGGFVTH---CGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred ccCccceeeec---CcchHHHHHHHcCCCeeecc
Confidence 45544 7743 55689999999999999974
No 134
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=97.43 E-value=0.00057 Score=61.32 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=89.7
Q ss_pred eecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCC----cEEEEE
Q psy15362 15 VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN----SILWLL 88 (200)
Q Consensus 15 ~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~----~~l~iv 88 (200)
.+|=|||.+.|......+ .......+|++++ +..++.++-|+ .|+.+.=+.||.++++++|+ +.|+-+
T Consensus 223 ~~PigID~~~~~~~a~~~---~~~~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQi 296 (474)
T PRK10117 223 VYPIGIEPDEIAKQAAGP---LPPKLAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQI 296 (474)
T ss_pred EEECeEcHHHHHHHhhch---HHHHHHHHHHHcC---CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEE
Confidence 478899998875443211 1223456777775 45677788886 59999999999999999984 567766
Q ss_pred cCCc----ccHH----HHHHHHHH----cCCCCC--cEEEe-ccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcC
Q psy15362 89 KFPA----VGEA----NIQATAQA----LGLDQH--RILFS-NVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTG 152 (200)
Q Consensus 89 G~~~----~~~~----~l~~~~~~----~gl~~~--rv~f~-g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G 152 (200)
.-+. +... ++++++.+ +|-. + =|+++ ..++.+++.++|+.||+++.|+-..| -++.-|..||-
T Consensus 297 a~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~-~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q 375 (474)
T PRK10117 297 APTSRGDVQAYQDIRHQLETEAGRINGKYGQL-GWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQ 375 (474)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHhccCCC-CceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeee
Confidence 5321 1112 33333332 2321 2 14443 45788999999999999998886666 67899999996
Q ss_pred CC
Q psy15362 153 TP 154 (200)
Q Consensus 153 ~P 154 (200)
.|
T Consensus 376 ~~ 377 (474)
T PRK10117 376 DP 377 (474)
T ss_pred cC
Confidence 53
No 135
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.41 E-value=0.0035 Score=57.75 Aligned_cols=145 Identities=13% Similarity=0.078 Sum_probs=84.3
Q ss_pred hhhhhhcCCCCCCEEE-EEeCCC----CCCCHHHHHHHH--HHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEE
Q psy15362 41 ITSRQQYGLPEDAIVY-CNFNQL----YKIDPSTLQMWV--NVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRIL 113 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~-~~~~r~----~K~~~~~l~a~~--~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~ 113 (200)
...|+++|++++..++ ...|+. .+..|.+++++. ++. ++.++++....+..++.+++.++..++. .+.
T Consensus 401 ~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~---~~l~fvvp~a~~~~~~~i~~~~~~~~~~--~~~ 475 (608)
T PRK01021 401 LSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA---STHQLLVSSANPKYDHLILEVLQQEGCL--HSH 475 (608)
T ss_pred HHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc---cCeEEEEecCchhhHHHHHHHHhhcCCC--CeE
Confidence 4568899998665444 444543 244577888776 332 3577777543222245667766543420 123
Q ss_pred Ee-ccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec-CCCcchhhhHHHHHh----hcC----------C
Q psy15362 114 FS-NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL-PGETLASRVAASQLA----TLG----------C 177 (200)
Q Consensus 114 f~-g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~-~g~~~~~r~~~~~~~----~~g----------~ 177 (200)
+. +. +-..+++.||+.+.+| |++++|++.+|+|.|+. .-...--.++..+++ ..+ .
T Consensus 476 ii~~~----~~~~~m~aaD~aLaaS----GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~Vv 547 (608)
T PRK01021 476 IVPSQ----FRYELMRECDCALAKC----GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIF 547 (608)
T ss_pred EecCc----chHHHHHhcCeeeecC----CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcc
Confidence 32 32 1235678999999764 69999999999999974 433221222222222 122 3
Q ss_pred Ccce----ecCHHHHHHHHHHhhcCC
Q psy15362 178 PELI----ARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 178 ~~~i----a~~~~~yv~~a~~l~~d~ 199 (200)
||++ ..+++...+. ++++.|+
T Consensus 548 PEllqgQ~~~tpe~La~~-l~lL~d~ 572 (608)
T PRK01021 548 PEFIGGKKDFQPEEVAAA-LDILKTS 572 (608)
T ss_pred hhhcCCcccCCHHHHHHH-HHHhcCH
Confidence 5777 2356666655 5777765
No 136
>PLN00414 glycosyltransferase family protein
Probab=97.40 E-value=0.0066 Score=54.33 Aligned_cols=100 Identities=11% Similarity=0.217 Sum_probs=61.2
Q ss_pred CCCCEEEEEeCCCCCCC-HHHHHHHHHHHHHCCCcEEEEEcCC-c--c----cHHHHHHHHHHcCCCCCcEEEeccCCHH
Q psy15362 50 PEDAIVYCNFNQLYKID-PSTLQMWVNVLKAVPNSILWLLKFP-A--V----GEANIQATAQALGLDQHRILFSNVAAKE 121 (200)
Q Consensus 50 ~~~~~v~~~~~r~~K~~-~~~l~a~~~i~~~~p~~~l~ivG~~-~--~----~~~~l~~~~~~~gl~~~rv~f~g~~~~~ 121 (200)
+++.++|+++|...... +.+.+....+... ..--++++... + . ..+.++..++..| +++.+|+|..
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s-~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g-----~vv~~w~PQ~ 323 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEFCLGMELT-GLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG-----IVWEGWVEQP 323 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHHc-CCCeEEEEecCCCcccchhhCChhHHHHhcCCC-----eEEeccCCHH
Confidence 45679999999886554 4565555544332 22234555321 1 1 0123333343322 4667999987
Q ss_pred HHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 122 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 122 ~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
+++. -...+.||.. .|.++++||+++|+|+|+.+
T Consensus 324 ~vL~-h~~v~~fvtH---~G~nS~~Ea~~~GvP~l~~P 357 (446)
T PLN00414 324 LILS-HPSVGCFVNH---CGFGSMWESLVSDCQIVFIP 357 (446)
T ss_pred HHhc-CCccceEEec---CchhHHHHHHHcCCCEEecC
Confidence 7764 2344778853 56689999999999999975
No 137
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.39 E-value=0.00079 Score=57.25 Aligned_cols=86 Identities=13% Similarity=0.250 Sum_probs=61.2
Q ss_pred CcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcc-hhhhHHHHHhhcCCCcceecCHHHH
Q psy15362 110 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL-ASRVAASQLATLGCPELIARTHKEY 188 (200)
Q Consensus 110 ~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~-~~r~~~~~~~~~g~~~~ia~~~~~y 188 (200)
+++.+.++.+ +++..+|..||+++.. +|..++.||+++|+|+|..+-... ....-+..+...|....+....-+.
T Consensus 229 ~~v~~~~~~~-~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~~~ 304 (321)
T TIGR00661 229 ENVEIRRITT-DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKELRL 304 (321)
T ss_pred CCEEEEECCh-HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhHHH
Confidence 7899999887 6788899999999975 355789999999999998764322 2233445566777776665554466
Q ss_pred HHHHHHhhcCC
Q psy15362 189 QDIAIRLGTDR 199 (200)
Q Consensus 189 v~~a~~l~~d~ 199 (200)
++..++..+|+
T Consensus 305 ~~~~~~~~~~~ 315 (321)
T TIGR00661 305 LEAILDIRNMK 315 (321)
T ss_pred HHHHHhccccc
Confidence 66666655543
No 138
>PLN02764 glycosyltransferase family protein
Probab=97.37 E-value=0.0078 Score=53.98 Aligned_cols=101 Identities=10% Similarity=0.228 Sum_probs=60.7
Q ss_pred CCCCEEEEEeCCCCCCC-HHHHHHHHHHHHHCCCcEEEEEcCC-cc-c-HH----HHHHHHHHcCCCCCcEEEeccCCHH
Q psy15362 50 PEDAIVYCNFNQLYKID-PSTLQMWVNVLKAVPNSILWLLKFP-AV-G-EA----NIQATAQALGLDQHRILFSNVAAKE 121 (200)
Q Consensus 50 ~~~~~v~~~~~r~~K~~-~~~l~a~~~i~~~~p~~~l~ivG~~-~~-~-~~----~l~~~~~~~gl~~~rv~f~g~~~~~ 121 (200)
+++.++|+++|...... +.+.+....+. ..-.-.++++..+ +. . .. .++..++. .-+++.+|+|..
T Consensus 255 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~-~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~g-----rG~v~~~W~PQ~ 328 (453)
T PLN02764 255 EPDSVVFCALGSQVILEKDQFQELCLGME-LTGSPFLVAVKPPRGSSTIQEALPEGFEERVKG-----RGVVWGGWVQQP 328 (453)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHH-hCCCCeEEEEeCCCCCcchhhhCCcchHhhhcc-----CCcEEeCCCCHH
Confidence 35679999999886644 44545444433 2223345555421 10 0 11 12222222 225677999988
Q ss_pred HHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCC
Q psy15362 122 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 160 (200)
Q Consensus 122 ~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g 160 (200)
+++. -..+..|+.. +|.++++||+++|+|+|+.+-
T Consensus 329 ~vL~-h~~v~~FvtH---~G~nS~~Eal~~GVP~l~~P~ 363 (453)
T PLN02764 329 LILS-HPSVGCFVSH---CGFGSMWESLLSDCQIVLVPQ 363 (453)
T ss_pred HHhc-CcccCeEEec---CCchHHHHHHHcCCCEEeCCc
Confidence 8764 2446778853 566899999999999999753
No 139
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.34 E-value=0.0062 Score=53.05 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=108.2
Q ss_pred eEeeeCeeecccccccccCCCCCCCCCCCchhhhhhhhh-cCCCCCCEEEEEeCCC---CCCCHHHHHHHHHHHHHCCCc
Q psy15362 8 QTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQ-YGLPEDAIVYCNFNQL---YKIDPSTLQMWVNVLKAVPNS 83 (200)
Q Consensus 8 ~~~~~gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~-l~l~~~~~v~~~~~r~---~K~~~~~l~a~~~i~~~~p~~ 83 (200)
+|.++|=++.+-+.......+. . ...... ++.+.+.+++++..|. .+....+.+++.++++++||.
T Consensus 169 ~IfvtGnt~iDal~~~~~~~~~--------~--~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~ 238 (383)
T COG0381 169 RIFVTGNTVIDALLNTRDRVLE--------D--SKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDV 238 (383)
T ss_pred ceEEeCChHHHHHHHHHhhhcc--------c--hhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCc
Confidence 5777887766666543211110 0 111111 5555556777777764 356678899999999999998
Q ss_pred EEEEEcCCcccHHHHHHHH-HHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCC-C
Q psy15362 84 ILWLLKFPAVGEANIQATA-QALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG-E 161 (200)
Q Consensus 84 ~l~ivG~~~~~~~~l~~~~-~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g-~ 161 (200)
.++.--.. +..+++.. ..++-. +||++...+.+.++..++..|-+.+.-| |..-=||-..|+||++.+. .
T Consensus 239 ~viyp~H~---~~~v~e~~~~~L~~~-~~v~li~pl~~~~f~~L~~~a~~iltDS----GgiqEEAp~lg~Pvl~lR~~T 310 (383)
T COG0381 239 IVIYPVHP---RPRVRELVLKRLKNV-ERVKLIDPLGYLDFHNLMKNAFLILTDS----GGIQEEAPSLGKPVLVLRDTT 310 (383)
T ss_pred eEEEeCCC---ChhhhHHHHHHhCCC-CcEEEeCCcchHHHHHHHHhceEEEecC----CchhhhHHhcCCcEEeeccCC
Confidence 88875442 25666655 555554 7899999999999999999997776432 3447799999999998643 3
Q ss_pred cchhhhHHHHHhhcCCCcceecCHHHHHHHHHHhhcCC
Q psy15362 162 TLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 162 ~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~d~ 199 (200)
...+++.+ |-.-++-.+.+.-++.+.++++|+
T Consensus 311 ERPE~v~a------gt~~lvg~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 311 ERPEGVEA------GTNILVGTDEENILDAATELLEDE 342 (383)
T ss_pred CCccceec------CceEEeCccHHHHHHHHHHHhhCh
Confidence 33444443 222344455566666666666654
No 140
>PLN02208 glycosyltransferase family protein
Probab=97.34 E-value=0.0082 Score=53.66 Aligned_cols=98 Identities=12% Similarity=0.268 Sum_probs=61.1
Q ss_pred CCCEEEEEeCCCCCCCHH-HHHHHHHH-HHHCCCcEEEEEcCC-c--ccH----HHHHHHHHHcCCCCCcEEEeccCCHH
Q psy15362 51 EDAIVYCNFNQLYKIDPS-TLQMWVNV-LKAVPNSILWLLKFP-A--VGE----ANIQATAQALGLDQHRILFSNVAAKE 121 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~-~l~a~~~i-~~~~p~~~l~ivG~~-~--~~~----~~l~~~~~~~gl~~~rv~f~g~~~~~ 121 (200)
++.++|.++|...+..+. +.+.+..+ ....|. ++++..+ + ... +.++..++. ..+++.+|.|..
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r~~~-----~g~~v~~W~PQ~ 322 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEERVKG-----RGVVWGGWVQQP 322 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHHHhc-----CCcEeeccCCHH
Confidence 457999999987765444 66666665 555664 4444321 1 001 122222222 456778999988
Q ss_pred HHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 122 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 122 ~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
+++. -.....|+. ..|-++++||+++|+|+|+.+
T Consensus 323 ~iL~-H~~v~~Fvt---HcG~nS~~Eai~~GVP~l~~P 356 (442)
T PLN02208 323 LILD-HPSIGCFVN---HCGPGTIWESLVSDCQMVLIP 356 (442)
T ss_pred HHhc-CCccCeEEc---cCCchHHHHHHHcCCCEEecC
Confidence 8764 133345664 355689999999999999975
No 141
>PLN03015 UDP-glucosyl transferase
Probab=97.33 E-value=0.003 Score=56.86 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=68.3
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCc----------c-cH----HHHHHHHHHcCCCCCcEEE
Q psy15362 50 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPA----------V-GE----ANIQATAQALGLDQHRILF 114 (200)
Q Consensus 50 ~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~----------~-~~----~~l~~~~~~~gl~~~rv~f 114 (200)
++..++|+++|......+.-++.++.-++..+..-++.+..+. . .. +.+.+.++..| +++
T Consensus 265 ~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rG-----l~v 339 (470)
T PLN03015 265 GERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVG-----LVV 339 (470)
T ss_pred CCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCc-----eEE
Confidence 3467999999998777777788888888888887777774210 0 00 11111121111 467
Q ss_pred eccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 115 SNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 115 ~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
.+|+|..+++. ....-.|+.. .|.++++||+++|+|+|+.+
T Consensus 340 ~~W~PQ~~vL~-h~~vg~fvtH---~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 340 TQWAPQVEILS-HRSIGGFLSH---CGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred EecCCHHHHhc-cCccCeEEec---CCchhHHHHHHcCCCEEecc
Confidence 79999888764 2345557743 45689999999999999975
No 142
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.12 E-value=0.0017 Score=58.44 Aligned_cols=134 Identities=17% Similarity=0.225 Sum_probs=72.6
Q ss_pred ecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCC----cEEEEEc
Q psy15362 16 LQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN----SILWLLK 89 (200)
Q Consensus 16 i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~----~~l~ivG 89 (200)
+|=|||.+.|......+ . -......+|++++ .+..+++++-|. .|+.+.=++||.++++++|+ +.|+-++
T Consensus 243 ~pigId~~~~~~~~~~~-~-v~~~~~~l~~~~~--~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~ 318 (474)
T PF00982_consen 243 FPIGIDPDAFAQLARSP-E-VQERAEELREKFK--GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIA 318 (474)
T ss_dssp ------HHHHHHHHH-S-----HHHHHHHHHTT--T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE-
T ss_pred eeccCChHHHHhhccCh-H-HHHHHHHHHHhcC--CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEe
Confidence 56789988774332211 1 1223356777764 334788888886 59999999999999999985 5666666
Q ss_pred CCc----cc----HHHHHHHHH----HcCCCCC--cEEE-eccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCC
Q psy15362 90 FPA----VG----EANIQATAQ----ALGLDQH--RILF-SNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGT 153 (200)
Q Consensus 90 ~~~----~~----~~~l~~~~~----~~gl~~~--rv~f-~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~ 153 (200)
.+. +. ++++++++. ++|-. + -|++ .+.++.+++.++|+.||+++.|+...| -++..|..+|..
T Consensus 319 ~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~-~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~ 397 (474)
T PF00982_consen 319 VPSREDVPEYQELRREVEELVGRINGKYGTP-DWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQD 397 (474)
T ss_dssp -B-STTSHHHHHHHHHHHHHHHHHHHHH-BT-TB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-
T ss_pred eccCccchhHHHHHHHHHHHHHHHHhhcccC-CceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEec
Confidence 421 11 123333333 23432 2 2444 455889999999999999999987776 789999999987
Q ss_pred C
Q psy15362 154 P 154 (200)
Q Consensus 154 P 154 (200)
+
T Consensus 398 ~ 398 (474)
T PF00982_consen 398 D 398 (474)
T ss_dssp T
T ss_pred C
Confidence 6
No 143
>PLN02534 UDP-glycosyltransferase
Probab=97.05 E-value=0.021 Score=51.80 Aligned_cols=102 Identities=18% Similarity=0.316 Sum_probs=65.7
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc--c-HHHH--HHHHHHcCCCCCcEEEeccCCHHHHHh
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV--G-EANI--QATAQALGLDQHRILFSNVAAKEEHVR 125 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~--~-~~~l--~~~~~~~gl~~~rv~f~g~~~~~~~~~ 125 (200)
+..++|+++|......+.-+.-++.-++..++--++.+..+.. . .+.+ +.+.... .. .++++.||+|..+++
T Consensus 282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~-~~-~g~~v~~w~pq~~iL- 358 (491)
T PLN02534 282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERI-KG-RGLLIKGWAPQVLIL- 358 (491)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhh-cc-CCeeccCCCCHHHHh-
Confidence 3579999999887665544444456677778777777763111 1 1111 1111111 12 667888999987765
Q ss_pred hcccccE--EEeCCCCCCchHHHHHHHcCCCeeecCC
Q psy15362 126 RGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLPG 160 (200)
Q Consensus 126 ~~~~aDv--~l~~~~~~~g~~~lEAma~G~PVV~~~g 160 (200)
...++ |+. .+|.++++||+++|+|+|+.+-
T Consensus 359 --~h~~v~~fvt---H~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 359 --SHPAIGGFLT---HCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred --cCCccceEEe---cCccHHHHHHHHcCCCEEeccc
Confidence 45555 664 3567899999999999999753
No 144
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.90 E-value=0.0063 Score=58.59 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=94.4
Q ss_pred ceeeEeeeCe-----eecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHH
Q psy15362 5 GQVQTSVNGI-----VLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVL 77 (200)
Q Consensus 5 ~~~~~~~~gi-----~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~ 77 (200)
|...+.+.|. .+|=|||.+.|......++. ......+|++++- ++..+++++-|+ .|+++.=+.||.+++
T Consensus 289 g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl~A~e~~L 365 (854)
T PLN02205 289 GYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPET--EAKVKELIKQFCD-QDRIMLLGVDDMDIFKGISLKLLAMEQLL 365 (854)
T ss_pred cceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhH--HHHHHHHHHHhcc-CCCEEEEEccCcccccCHHHHHHHHHHHH
Confidence 3344545444 36779998877543322211 1223567777652 346788888886 599999999999999
Q ss_pred HHCCC----cEEEEEcCCc----ccHHHH----HHHHH----HcCCC-CCcEEEe-ccCCHHHHHhhcccccEEEeCCCC
Q psy15362 78 KAVPN----SILWLLKFPA----VGEANI----QATAQ----ALGLD-QHRILFS-NVAAKEEHVRRGQLADVCLDTPLC 139 (200)
Q Consensus 78 ~~~p~----~~l~ivG~~~----~~~~~l----~~~~~----~~gl~-~~rv~f~-g~~~~~~~~~~~~~aDv~l~~~~~ 139 (200)
+++|+ +.|+-+.-+. ....++ ++++. ++|-. -.-|+++ ..++.+++.++|+.||++|.|+-.
T Consensus 366 ~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lR 445 (854)
T PLN02205 366 MQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVR 445 (854)
T ss_pred HhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEecccc
Confidence 99996 4666665321 112223 33333 23321 0236665 457899999999999999988866
Q ss_pred CC-chHHHHHHHcCC
Q psy15362 140 NG-HTTSMDVLWTGT 153 (200)
Q Consensus 140 ~~-g~~~lEAma~G~ 153 (200)
.| -++..|-.+|..
T Consensus 446 DGMNLva~Eyia~~~ 460 (854)
T PLN02205 446 DGMNLIPYEYIISRQ 460 (854)
T ss_pred ccccccchheeEEcc
Confidence 66 678899998854
No 145
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=96.89 E-value=0.0016 Score=50.01 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=49.6
Q ss_pred CcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcc---hhhhHHHHHhhcCCCcceec---
Q psy15362 110 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL---ASRVAASQLATLGCPELIAR--- 183 (200)
Q Consensus 110 ~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~---~~r~~~~~~~~~g~~~~ia~--- 183 (200)
.+|.+.++.+ ++..+|+.||+++.. +|+.|+.|++++|+|.|..+-... ....-+..+...|....+.+
T Consensus 55 ~~v~~~~~~~--~m~~~m~~aDlvIs~---aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~ 129 (167)
T PF04101_consen 55 PNVKVFGFVD--NMAELMAAADLVISH---AGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESEL 129 (167)
T ss_dssp CCCEEECSSS--SHHHHHHHHSEEEEC---S-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-
T ss_pred CcEEEEechh--hHHHHHHHcCEEEeC---CCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccC
Confidence 5799999995 467788999999863 567899999999999987543331 11112223444455444332
Q ss_pred CHHHHHHHHHHhhcC
Q psy15362 184 THKEYQDIAIRLGTD 198 (200)
Q Consensus 184 ~~~~yv~~a~~l~~d 198 (200)
+.+.+.+....+.++
T Consensus 130 ~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 130 NPEELAEAIEELLSD 144 (167)
T ss_dssp SCCCHHHHHHCHCCC
T ss_pred CHHHHHHHHHHHHcC
Confidence 234555555555444
No 146
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=96.84 E-value=0.019 Score=49.47 Aligned_cols=121 Identities=12% Similarity=0.012 Sum_probs=75.7
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEE-EcCCcc---cHHHHHHHHHHcCCCCCcEEE-eccCCHHHHHhhcc
Q psy15362 54 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWL-LKFPAV---GEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQ 128 (200)
Q Consensus 54 ~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~i-vG~~~~---~~~~l~~~~~~~gl~~~rv~f-~g~~~~~~~~~~~~ 128 (200)
+++|.-|.+.-+|-+.++++.+. ...+.++++ +|.++. ..+++++..+++--. +++.. ..++|.+|+.++++
T Consensus 188 ILvGNSgd~sNnHieaL~~L~~~--~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~-~~~~iL~e~mpf~eYl~lL~ 264 (360)
T PF07429_consen 188 ILVGNSGDPSNNHIEALEALKQQ--FGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA-ENFQILTEFMPFDEYLALLS 264 (360)
T ss_pred EEEcCCCCCCccHHHHHHHHHHh--cCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc-cceeEhhhhCCHHHHHHHHH
Confidence 44565566666665555554432 234577655 444321 224455566665333 56765 57899999999999
Q ss_pred cccEEEeCCCCCCch-HHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCccee
Q psy15362 129 LADVCLDTPLCNGHT-TSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA 182 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~-~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia 182 (200)
.||+.+..+..-.|+ +++=.+.+|+||+......+ ...+.+.|++-+..
T Consensus 265 ~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~-----~~~l~~~~ipVlf~ 314 (360)
T PF07429_consen 265 RCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPF-----WQDLKEQGIPVLFY 314 (360)
T ss_pred hCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChH-----HHHHHhCCCeEEec
Confidence 999999888655443 57789999999998654322 22344556654433
No 147
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.75 E-value=0.032 Score=47.56 Aligned_cols=115 Identities=15% Similarity=0.085 Sum_probs=70.3
Q ss_pred hhhhhcCCCC-CCEEEEEeCC---CCCCCH--HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEe
Q psy15362 42 TSRQQYGLPE-DAIVYCNFNQ---LYKIDP--STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS 115 (200)
Q Consensus 42 ~~R~~l~l~~-~~~v~~~~~r---~~K~~~--~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~ 115 (200)
..+..++++. +.+++...+. ..|.-+ .+.+....+.+ .+.+++++|++ .+++..+++.+. .....+-+.
T Consensus 163 ~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~--~~~~ivl~G~~-~e~~~~~~i~~~--~~~~~~~l~ 237 (334)
T TIGR02195 163 AALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID--QGYQVVLFGSA-KDHPAGNEIEAL--LPGELRNLA 237 (334)
T ss_pred HHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH--CCCEEEEEECh-hhHHHHHHHHHh--CCcccccCC
Confidence 3456677764 3444444432 456543 55555555544 35788888853 344444444443 221234478
Q ss_pred ccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchh
Q psy15362 116 NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLAS 165 (200)
Q Consensus 116 g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~ 165 (200)
|..+-.++..+++.||+++..- +|. +==|-|.|+|+|+.-|.+-..
T Consensus 238 g~~sL~el~ali~~a~l~I~~D--SGp--~HlAaA~~~P~i~lfG~t~p~ 283 (334)
T TIGR02195 238 GETSLDEAVDLIALAKAVVTND--SGL--MHVAAALNRPLVALYGSTSPD 283 (334)
T ss_pred CCCCHHHHHHHHHhCCEEEeeC--CHH--HHHHHHcCCCEEEEECCCChh
Confidence 8888899999999999998431 222 333678999999987765433
No 148
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.60 E-value=0.017 Score=47.91 Aligned_cols=92 Identities=20% Similarity=0.103 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHH
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSM 146 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~l 146 (200)
+.+.+....+.++ +.+++++|.+ .+++..+++.+..+-. ..+.+.|..+-.|+..+++.||+++.+- .|. +=
T Consensus 140 ~~~~~l~~~l~~~--~~~ivl~g~~-~e~~~~~~i~~~~~~~-~~~~~~~~~~l~e~~~li~~~~l~I~~D---sg~-~H 211 (279)
T cd03789 140 ERFAALADRLLAR--GARVVLTGGP-AERELAEEIAAALGGP-RVVNLAGKTSLRELAALLARADLVVTND---SGP-MH 211 (279)
T ss_pred HHHHHHHHHHHHC--CCEEEEEech-hhHHHHHHHHHhcCCC-ccccCcCCCCHHHHHHHHHhCCEEEeeC---CHH-HH
Confidence 3455555555544 7889999853 4455566665554322 4456788888889999999999999642 223 33
Q ss_pred HHHHcCCCeeecCCCcchhh
Q psy15362 147 DVLWTGTPVVTLPGETLASR 166 (200)
Q Consensus 147 EAma~G~PVV~~~g~~~~~r 166 (200)
-|.+.|+|+|+.-|..-..+
T Consensus 212 lA~a~~~p~i~l~g~~~~~~ 231 (279)
T cd03789 212 LAAALGTPTVALFGPTDPAR 231 (279)
T ss_pred HHHHcCCCEEEEECCCCccc
Confidence 34699999999766544443
No 149
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.58 E-value=0.053 Score=46.29 Aligned_cols=102 Identities=16% Similarity=0.057 Sum_probs=62.6
Q ss_pred EEEeCCCCCCCH----HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccccc
Q psy15362 56 YCNFNQLYKIDP----STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD 131 (200)
Q Consensus 56 ~~~~~r~~K~~~----~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aD 131 (200)
+|+-.+.++..+ .+++.+.++.++.+ ..+++....-...+....+.+.++-. .++.+...-+..-+..+|..||
T Consensus 153 IGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~-~~~~~~~~~~~nPy~~~La~ad 230 (311)
T PF06258_consen 153 IGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELLKDN-PGVYIWDGTGENPYLGFLAAAD 230 (311)
T ss_pred ECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCC-CceEEecCCCCCcHHHHHHhCC
Confidence 343334444444 35666677777776 77888765322223333333333333 6674445555556888899999
Q ss_pred EEEeCCCCCCchHHHHHHHcCCCeeecCCC
Q psy15362 132 VCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 161 (200)
Q Consensus 132 v~l~~~~~~~g~~~lEAma~G~PVV~~~g~ 161 (200)
.++.|-- +-..+.||.++|+||-...-+
T Consensus 231 ~i~VT~D--SvSMvsEA~~tG~pV~v~~l~ 258 (311)
T PF06258_consen 231 AIVVTED--SVSMVSEAAATGKPVYVLPLP 258 (311)
T ss_pred EEEEcCc--cHHHHHHHHHcCCCEEEecCC
Confidence 9987632 224589999999999986443
No 150
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=96.53 E-value=0.011 Score=48.97 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHc-CCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchH
Q psy15362 66 DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTT 144 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~-gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~ 144 (200)
...+++.+..+++..|+.++++--++......-.+...++ +.. +++++....+.. .++..||.++.-.+ ++
T Consensus 139 ~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~Ll~~s~~VvtinS----tv 210 (269)
T PF05159_consen 139 QADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLP-NVVIIDDDVNLY---ELLEQSDAVVTINS----TV 210 (269)
T ss_pred HhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCC-CeEEECCCCCHH---HHHHhCCEEEEECC----HH
Confidence 3567888888889999999988654310000011333332 343 556665666544 45679999975433 88
Q ss_pred HHHHHHcCCCeeec
Q psy15362 145 SMDVLWTGTPVVTL 158 (200)
Q Consensus 145 ~lEAma~G~PVV~~ 158 (200)
-+||+.+|+||++.
T Consensus 211 GlEAll~gkpVi~~ 224 (269)
T PF05159_consen 211 GLEALLHGKPVIVF 224 (269)
T ss_pred HHHHHHcCCceEEe
Confidence 99999999999995
No 151
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.47 E-value=0.045 Score=47.00 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=66.9
Q ss_pred hhhhcCCC-CCCEEEEEeC-C--CCCCCH--HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCC-CCc-EEE
Q psy15362 43 SRQQYGLP-EDAIVYCNFN-Q--LYKIDP--STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLD-QHR-ILF 114 (200)
Q Consensus 43 ~R~~l~l~-~~~~v~~~~~-r--~~K~~~--~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~-~~r-v~f 114 (200)
....+++. .+.++....+ + ..|.-+ .+.+....+.+ .+.+++++|++ .+++..++..+..+-. ..+ +.+
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~-~e~~~~~~i~~~~~~~~~~~~~~l 246 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSA-KDHEAGNEILAALNTEQQAWCRNL 246 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCH-HhHHHHHHHHHhcccccccceeec
Confidence 34455654 3344433443 2 356642 35444444442 46788888853 4444455555443321 022 456
Q ss_pred eccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCc
Q psy15362 115 SNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 162 (200)
Q Consensus 115 ~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~ 162 (200)
.|..+-.++.++++.||++|.. .+|. +==|-|.|+|+|+.-|.+
T Consensus 247 ~g~~sL~el~ali~~a~l~I~n--DTGp--~HlAaA~g~P~valfGpt 290 (348)
T PRK10916 247 AGETQLEQAVILIAACKAIVTN--DSGL--MHVAAALNRPLVALYGPS 290 (348)
T ss_pred cCCCCHHHHHHHHHhCCEEEec--CChH--HHHHHHhCCCEEEEECCC
Confidence 7888888999999999999843 2222 334778999999987754
No 152
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=96.29 E-value=0.05 Score=46.32 Aligned_cols=118 Identities=14% Similarity=0.053 Sum_probs=73.6
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEE-EcCC--c-ccHHHHHHHHHHcCCCCCcEEE-eccCCHHHHHhhcc
Q psy15362 54 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWL-LKFP--A-VGEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQ 128 (200)
Q Consensus 54 ~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~i-vG~~--~-~~~~~l~~~~~~~gl~~~rv~f-~g~~~~~~~~~~~~ 128 (200)
+++|.-|.+.-+|-+.++++.+- ...|+++++ +|.+ + ...+++++..+++--. +++.. ...+|.+|+..+++
T Consensus 149 IlvGNSgd~SN~Hie~L~~l~~~--~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~-~~~~~L~e~l~f~eYl~lL~ 225 (322)
T PRK02797 149 ILVGNSGDRSNRHIEALRALHQQ--FGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGA-ENFQILTEKLPFDDYLALLR 225 (322)
T ss_pred EEEeCCCCCcccHHHHHHHHHHH--hCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCc-ccEEehhhhCCHHHHHHHHH
Confidence 33455555555665565655543 245677666 4442 1 1224555666665443 56665 56789999999999
Q ss_pred cccEEEeCCCCCCch-HHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCc
Q psy15362 129 LADVCLDTPLCNGHT-TSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPE 179 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~-~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~ 179 (200)
.||+.+..+..-.|+ +++=.+..|+||+......+ ...+.+.|++-
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~f-----wqdl~e~gv~V 272 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPF-----WQDLTEQGLPV 272 (322)
T ss_pred hCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCch-----HHHHHhCCCeE
Confidence 999999877654443 57778999999998654322 12344556654
No 153
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.27 E-value=0.17 Score=45.07 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=64.1
Q ss_pred HHHHHHHcCCCCCcEEE-eccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcC
Q psy15362 98 IQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLG 176 (200)
Q Consensus 98 l~~~~~~~gl~~~rv~f-~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g 176 (200)
.+++.+.+.-. +++++ ....+..++..+++.||+++.+=- -+++=|+++|+|+|...- ++...++++.+|
T Consensus 296 ~~~l~~~~~~~-~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl----Ha~I~a~~~gvP~i~i~Y----~~K~~~~~~~lg 366 (426)
T PRK10017 296 ALNLRQHVSDP-ARYHVVMDELNDLEMGKILGACELTVGTRL----HSAIISMNFGTPAIAINY----EHKSAGIMQQLG 366 (426)
T ss_pred HHHHHHhcccc-cceeEecCCCChHHHHHHHhhCCEEEEecc----hHHHHHHHcCCCEEEeee----hHHHHHHHHHcC
Confidence 35555555433 55544 444445688889999999995422 468899999999998643 345567888999
Q ss_pred CCcceec----CHHHHHHHHHHhhcCC
Q psy15362 177 CPELIAR----THKEYQDIAIRLGTDR 199 (200)
Q Consensus 177 ~~~~ia~----~~~~yv~~a~~l~~d~ 199 (200)
+++++.+ +.+++++...++.+|.
T Consensus 367 ~~~~~~~~~~l~~~~Li~~v~~~~~~r 393 (426)
T PRK10017 367 LPEMAIDIRHLLDGSLQAMVADTLGQL 393 (426)
T ss_pred CccEEechhhCCHHHHHHHHHHHHhCH
Confidence 9987442 5567777777776654
No 154
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.26 E-value=0.1 Score=43.92 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=57.7
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEE
Q psy15362 54 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC 133 (200)
Q Consensus 54 ~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~ 133 (200)
+++..-|.-.|+. ..+.++.+.+..-|.++++ |...+....+++.++. . +++.+.=.. +++..++..||..
T Consensus 161 ilI~lGGsDpk~l--t~kvl~~L~~~~~nl~iV~-gs~~p~l~~l~k~~~~---~-~~i~~~~~~--~dma~LMke~d~a 231 (318)
T COG3980 161 ILITLGGSDPKNL--TLKVLAELEQKNVNLHIVV-GSSNPTLKNLRKRAEK---Y-PNINLYIDT--NDMAELMKEADLA 231 (318)
T ss_pred EEEEccCCChhhh--HHHHHHHhhccCeeEEEEe-cCCCcchhHHHHHHhh---C-CCeeeEecc--hhHHHHHHhcchh
Confidence 4444434445553 4555554444332555544 5444555666666665 3 667765444 6889999999999
Q ss_pred EeCCCCCCchHHHHHHHcCCCee
Q psy15362 134 LDTPLCNGHTTSMDVLWTGTPVV 156 (200)
Q Consensus 134 l~~~~~~~g~~~lEAma~G~PVV 156 (200)
+.+ +|.++.||...|+|..
T Consensus 232 I~A----aGstlyEa~~lgvP~l 250 (318)
T COG3980 232 ISA----AGSTLYEALLLGVPSL 250 (318)
T ss_pred eec----cchHHHHHHHhcCCce
Confidence 853 6799999999999943
No 155
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.25 E-value=0.075 Score=45.74 Aligned_cols=109 Identities=14% Similarity=0.011 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEEeCC--CCCCCH--HHHHHHHHHHHHCCCcEEEEEcCCccc-HHHHHHHHHHcCCCCCcEEEeccCCHH
Q psy15362 47 YGLPEDAIVYCNFNQ--LYKIDP--STLQMWVNVLKAVPNSILWLLKFPAVG-EANIQATAQALGLDQHRILFSNVAAKE 121 (200)
Q Consensus 47 l~l~~~~~v~~~~~r--~~K~~~--~~l~a~~~i~~~~p~~~l~ivG~~~~~-~~~l~~~~~~~gl~~~rv~f~g~~~~~ 121 (200)
++++. .++....+. ..|.-+ .+.+....+.+ .+.+++++|+++.. .+..++..+...-. ..+.+.|..+-.
T Consensus 179 ~~~~~-~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~--~~~~vvl~ggp~e~e~~~~~~i~~~~~~~-~~~~l~g~~sL~ 254 (352)
T PRK10422 179 LGVTQ-NYVVIQPTARQIFKCWDNDKFSAVIDALQA--RGYEVVLTSGPDKDDLACVNEIAQGCQTP-PVTALAGKTTFP 254 (352)
T ss_pred cCCCC-CeEEEecCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEcCCChHHHHHHHHHHHhcCCC-ccccccCCCCHH
Confidence 34443 344444433 456532 45555555543 36788888753221 22234444432221 345678998889
Q ss_pred HHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcc
Q psy15362 122 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL 163 (200)
Q Consensus 122 ~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~ 163 (200)
++..+++.||+||.. .+|.+ ==|-|.|+|+|+.-|.+-
T Consensus 255 el~ali~~a~l~v~n--DSGp~--HlAaA~g~P~v~lfGpt~ 292 (352)
T PRK10422 255 ELGALIDHAQLFIGV--DSAPA--HIAAAVNTPLICLFGATD 292 (352)
T ss_pred HHHHHHHhCCEEEec--CCHHH--HHHHHcCCCEEEEECCCC
Confidence 999999999999943 22323 336688999999877543
No 156
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.17 E-value=0.19 Score=43.59 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=86.3
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcE--EEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc
Q psy15362 50 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSI--LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG 127 (200)
Q Consensus 50 ~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~--l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~ 127 (200)
|++..+++++|.-.-+ .++++++.......|+.+ .+++-++..-+...+++.+..+-. ++|.+..+. .++..++
T Consensus 217 pE~~~Ilvs~GGG~dG-~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~-p~i~I~~f~--~~~~~ll 292 (400)
T COG4671 217 PEGFDILVSVGGGADG-AELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKR-PHISIFEFR--NDFESLL 292 (400)
T ss_pred CccceEEEecCCChhh-HHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccC-CCeEEEEhh--hhHHHHH
Confidence 5556777777755444 356666666555556554 444432333345555565555543 788888888 5777888
Q ss_pred ccccEEEeCCCCCCchHHHHHHHcCCCeeecCC-Ccchh-hhHHHHHhhcCCCcceec---CHHHHHHHHHHhh
Q psy15362 128 QLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG-ETLAS-RVAASQLATLGCPELIAR---THKEYQDIAIRLG 196 (200)
Q Consensus 128 ~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g-~~~~~-r~~~~~~~~~g~~~~ia~---~~~~yv~~a~~l~ 196 (200)
..|+..|.- +|-+|++|-+++|+|.+.-+- ..-.+ -+-+.-++.+|+-+++.. ++..+.++.....
T Consensus 293 ~gA~~vVSm---~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l 363 (400)
T COG4671 293 AGARLVVSM---GGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAAL 363 (400)
T ss_pred Hhhheeeec---ccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcc
Confidence 999999853 455999999999999987532 11112 223445667788776653 3445555444433
No 157
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.082 Score=47.71 Aligned_cols=135 Identities=17% Similarity=0.221 Sum_probs=86.9
Q ss_pred eeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCC----CcEEEE
Q psy15362 14 IVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVP----NSILWL 87 (200)
Q Consensus 14 i~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p----~~~l~i 87 (200)
..+|=|||...|......+ . .+.....+++.++ .+..++.++-|+ .||.+.-+.+|.+++..+| ++.|+-
T Consensus 247 ~a~PIgID~~~~~~~~~~~-~-v~~~~~el~~~~~--~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQ 322 (486)
T COG0380 247 GAFPIGIDPEEFERALKSP-S-VQEKVLELKAELG--RNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQ 322 (486)
T ss_pred EEEeeecCHHHHHHhhcCC-c-hhhHHHHHHHHhc--CCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEE
Confidence 4577789988775432111 1 1122355666654 335677788886 5999999999999999988 466766
Q ss_pred EcCCcc-c-------HHHHHHHHH----HcCCC-CCcEEEecc-CCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcC
Q psy15362 88 LKFPAV-G-------EANIQATAQ----ALGLD-QHRILFSNV-AAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTG 152 (200)
Q Consensus 88 vG~~~~-~-------~~~l~~~~~----~~gl~-~~rv~f~g~-~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G 152 (200)
++.+.. . +..+++++. ++|-- -.-|+|+-. ++++++.++|..+|+++.|+-..| -++..|.-+|-
T Consensus 323 i~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q 402 (486)
T COG0380 323 IAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQ 402 (486)
T ss_pred ecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhh
Confidence 764211 1 112222222 22321 123566555 789999999999999988876666 67888888874
No 158
>KOG1192|consensus
Probab=96.05 E-value=0.091 Score=47.01 Aligned_cols=102 Identities=14% Similarity=0.304 Sum_probs=66.2
Q ss_pred CCEEEEEeCCCC---CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCC---CCcEEEeccCCHHHHHh
Q psy15362 52 DAIVYCNFNQLY---KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLD---QHRILFSNVAAKEEHVR 125 (200)
Q Consensus 52 ~~~v~~~~~r~~---K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~---~~rv~f~g~~~~~~~~~ 125 (200)
..++|.++|... .........++..+++.|+..++..=.. ..... +.+ ++. ..+|++.+|.|..+++.
T Consensus 277 ~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~-~~~~~---~~~--~~~~~~~~nV~~~~W~PQ~~lll 350 (496)
T KOG1192|consen 277 HSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRP-DDSIY---FPE--GLPNRGRGNVVLSKWAPQNDLLL 350 (496)
T ss_pred CCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecC-Ccchh---hhh--cCCCCCcCceEEecCCCcHHHhc
Confidence 478888888875 5677888888887777777774443222 21121 111 332 24699999999877541
Q ss_pred hcccccEEEeCCCCCCchHHHHHHHcCCCeeec--CCCc
Q psy15362 126 RGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL--PGET 162 (200)
Q Consensus 126 ~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~--~g~~ 162 (200)
--.....|+. .+|-++++||+.+|+|+|+. -|+.
T Consensus 351 ~H~~v~~FvT---HgG~nSt~E~~~~GvP~v~~Plf~DQ 386 (496)
T KOG1192|consen 351 DHPAVGGFVT---HGGWNSTLESIYSGVPMVCVPLFGDQ 386 (496)
T ss_pred CCCcCcEEEE---CCcccHHHHHHhcCCceecCCccccc
Confidence 1233566664 24557889999999999964 3553
No 159
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=95.75 E-value=0.068 Score=43.31 Aligned_cols=118 Identities=20% Similarity=0.105 Sum_probs=58.8
Q ss_pred hhhhcCCCCCCEEEEEeC--CCCCCCH--HHHHHHHHHHHHCCCcEEEEEcCCccc-HHHHHHHHHHcCCCCCcEEEecc
Q psy15362 43 SRQQYGLPEDAIVYCNFN--QLYKIDP--STLQMWVNVLKAVPNSILWLLKFPAVG-EANIQATAQALGLDQHRILFSNV 117 (200)
Q Consensus 43 ~R~~l~l~~~~~v~~~~~--r~~K~~~--~~l~a~~~i~~~~p~~~l~ivG~~~~~-~~~l~~~~~~~gl~~~rv~f~g~ 117 (200)
.++.+...++..+..+.+ ...|.-+ .+.+...++.+ .. .+++++|.+ .+ ..++.+.+.+ +.....+.+.|.
T Consensus 96 ~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~-~~-~~vvl~g~~-~~~~~~~~~~~~~-~~~~~~~~~~~~ 171 (247)
T PF01075_consen 96 ARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKE-RG-YRVVLLGGP-EEQEKEIADQIAA-GLQNPVINLAGK 171 (247)
T ss_dssp HHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCC-CT--EEEE--SS-HHHHHHHHHHHHT-THTTTTEEETTT
T ss_pred HHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHh-hC-ceEEEEccc-hHHHHHHHHHHHH-hcccceEeecCC
Confidence 334343223344433333 3456543 24333333333 32 678888853 22 1223222322 221136788898
Q ss_pred CCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhH
Q psy15362 118 AAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVA 168 (200)
Q Consensus 118 ~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~ 168 (200)
.+-.++..+++.||++|.+- + -.+==|.|.|+|+|+.-|.....+++
T Consensus 172 ~~l~e~~ali~~a~~~I~~D--t--g~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 172 TSLRELAALISRADLVIGND--T--GPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp S-HHHHHHHHHTSSEEEEES--S--HHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred CCHHHHHHHHhcCCEEEecC--C--hHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 88899999999999998431 1 22444778999999987766544444
No 160
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.70 E-value=0.17 Score=43.27 Aligned_cols=95 Identities=15% Similarity=0.014 Sum_probs=58.2
Q ss_pred CCCCC--HHHHHHHHHHHHHCCCcEEEEEcCCcccH-HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCC
Q psy15362 62 LYKID--PSTLQMWVNVLKAVPNSILWLLKFPAVGE-ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL 138 (200)
Q Consensus 62 ~~K~~--~~~l~a~~~i~~~~p~~~l~ivG~~~~~~-~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~ 138 (200)
..|.- +.+.+....+.+ .+..++++|++...+ +..++..+..+-. .-+.+.|..+-.++..+++.||++|..
T Consensus 193 ~~K~Wp~e~~~~l~~~l~~--~~~~ivl~g~p~~~e~~~~~~i~~~~~~~-~~~~l~g~~sL~el~ali~~a~l~Vs~-- 267 (344)
T TIGR02201 193 FFKCWDNDRFSALIDALHA--RGYEVVLTSGPDKDELAMVNEIAQGCQTP-RVTSLAGKLTLPQLAALIDHARLFIGV-- 267 (344)
T ss_pred cccCCCHHHHHHHHHHHHh--CCCeEEEecCCCHHHHHHHHHHHhhCCCC-cccccCCCCCHHHHHHHHHhCCEEEec--
Confidence 34553 345555555543 357888888532212 2334443333321 234578988889999999999999954
Q ss_pred CCCchHHHHHHHcCCCeeecCCCcc
Q psy15362 139 CNGHTTSMDVLWTGTPVVTLPGETL 163 (200)
Q Consensus 139 ~~~g~~~lEAma~G~PVV~~~g~~~ 163 (200)
.+|. +==|-|+|+|+|+.-|.+-
T Consensus 268 DSGp--~HlAaA~g~p~v~Lfgpt~ 290 (344)
T TIGR02201 268 DSVP--MHMAAALGTPLVALFGPSK 290 (344)
T ss_pred CCHH--HHHHHHcCCCEEEEECCCC
Confidence 2222 3347789999999776543
No 161
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=95.48 E-value=0.086 Score=45.53 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=77.4
Q ss_pred eEeeeCeeecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCCCCCC--------H--HHHHHHHHHH
Q psy15362 8 QTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKID--------P--STLQMWVNVL 77 (200)
Q Consensus 8 ~~~~~gi~i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~~K~~--------~--~~l~a~~~i~ 77 (200)
++.++|.|=.+.+-... . ..+..+++.++++.+..++...=.+++.. . .-.+.+. .
T Consensus 159 ~i~~~G~PR~D~l~~~~-----------~-~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~--~ 224 (369)
T PF04464_consen 159 KILVTGYPRNDYLFNKS-----------K-ENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLN--F 224 (369)
T ss_dssp GEEES--GGGHHHHHST-----------T--HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT-HHHHH--H
T ss_pred eEEEeCCCeEhHHhccC-----------H-HHHHHHHHHhccCCCCcEEEEeeccccccccccccccccccCHHHHH--H
Confidence 56677777444443221 1 11457788899998876655543222111 1 1122333 3
Q ss_pred HHCCCcEEEEEcCCcccHHHHHHHHHH-cCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCee
Q psy15362 78 KAVPNSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV 156 (200)
Q Consensus 78 ~~~p~~~l~ivG~~~~~~~~l~~~~~~-~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV 156 (200)
...++..+++-.+ + .++..... .... ++|++...- .++..++..||+++.=++ .+..|++.+++|||
T Consensus 225 ~~~~~~~li~k~H--p---~~~~~~~~~~~~~-~~i~~~~~~--~~~~~ll~~aDiLITDyS----Si~fD~~~l~KPii 292 (369)
T PF04464_consen 225 LLKNNYVLIIKPH--P---NMKKKFKDFKEDN-SNIIFVSDN--EDIYDLLAAADILITDYS----SIIFDFLLLNKPII 292 (369)
T ss_dssp HHTTTEEEEE--S--H---HHHTT----TT-T-TTEEE-TT---S-HHHHHHT-SEEEESS-----THHHHHGGGT--EE
T ss_pred HhCCCcEEEEEeC--c---hhhhchhhhhccC-CcEEECCCC--CCHHHHHHhcCEEEEech----hHHHHHHHhCCCEE
Confidence 3456788777654 2 23322222 3344 788886654 367777889999995443 57999999999999
Q ss_pred ecC--CCcchhhhHHHHHhh--cCCCcceecCHHHHHHHHHHhh
Q psy15362 157 TLP--GETLASRVAASQLAT--LGCPELIARTHKEYQDIAIRLG 196 (200)
Q Consensus 157 ~~~--g~~~~~r~~~~~~~~--~g~~~~ia~~~~~yv~~a~~l~ 196 (200)
... -+......| ++.. .-.++.++.+.+++++......
T Consensus 293 fy~~D~~~Y~~~rg--~~~~~~~~~pg~~~~~~~eL~~~i~~~~ 334 (369)
T PF04464_consen 293 FYQPDLEEYEKERG--FYFDYEEDLPGPIVYNFEELIEAIENII 334 (369)
T ss_dssp EE-TTTTTTTTTSS--BSS-TTTSSSS-EESSHHHHHHHHTTHH
T ss_pred EEeccHHHHhhccC--CCCchHhhCCCceeCCHHHHHHHHHhhh
Confidence 653 232221111 1111 2345667888888887665543
No 162
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.46 E-value=0.22 Score=42.08 Aligned_cols=97 Identities=20% Similarity=0.020 Sum_probs=59.6
Q ss_pred CCCCCH--HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCC
Q psy15362 62 LYKIDP--STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC 139 (200)
Q Consensus 62 ~~K~~~--~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~ 139 (200)
..|.-+ .+.+....+.++ +.++++++++..+++..+++.+. .. + ..+.|..+-.++..+++.||++|..-
T Consensus 191 ~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~--~~-~-~~l~g~~sL~el~ali~~a~l~I~~D-- 262 (319)
T TIGR02193 191 DDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEA--LP-G-AVVLPKMSLAEVAALLAGADAVVGVD-- 262 (319)
T ss_pred ccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhh--CC-C-CeecCCCCHHHHHHHHHcCCEEEeCC--
Confidence 456643 455555555442 67777775332333444555443 22 2 35679888889999999999999432
Q ss_pred CCchHHHHHHHcCCCeeecCCCcchhhhH
Q psy15362 140 NGHTTSMDVLWTGTPVVTLPGETLASRVA 168 (200)
Q Consensus 140 ~~g~~~lEAma~G~PVV~~~g~~~~~r~~ 168 (200)
+|.+ ==|-|.|+|+|+.-|.+-..+++
T Consensus 263 Sgp~--HlAaa~g~P~i~lfg~t~p~~~~ 289 (319)
T TIGR02193 263 TGLT--HLAAALDKPTVTLYGATDPGRTG 289 (319)
T ss_pred ChHH--HHHHHcCCCEEEEECCCCHhhcc
Confidence 2222 33568899999987765544443
No 163
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=95.43 E-value=0.046 Score=47.40 Aligned_cols=92 Identities=12% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCCCEEEEEeCCC----CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHh
Q psy15362 50 PEDAIVYCNFNQL----YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVR 125 (200)
Q Consensus 50 ~~~~~v~~~~~r~----~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~ 125 (200)
+++.++...-|+. .+..+.+++++.++.++. .++++.+. ...+.+++...+. ..+.+.+ +...
T Consensus 165 ~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~--~~~~i~~a--~~~~~i~~~~~~~----~~~~~~~-----~~~~ 231 (347)
T PRK14089 165 DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKE--KILVVPSF--FKGKDLKEIYGDI----SEFEISY-----DTHK 231 (347)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcC--cEEEEeCC--CcHHHHHHHHhcC----CCcEEec-----cHHH
Confidence 3334444444432 234577888888877653 67777664 2335566655432 2234443 2345
Q ss_pred hcccccEEEeCCCCCCchHHHHHHHcCCCeeec
Q psy15362 126 RGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 126 ~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~ 158 (200)
+|+.||+.+..| |++++|++.+|+|.|..
T Consensus 232 ~m~~aDlal~~S----GT~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 232 ALLEAEFAFICS----GTATLEAALIGTPFVLA 260 (347)
T ss_pred HHHhhhHHHhcC----cHHHHHHHHhCCCEEEE
Confidence 688999998754 68888999999999973
No 164
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.30 E-value=0.29 Score=41.44 Aligned_cols=94 Identities=16% Similarity=-0.030 Sum_probs=58.3
Q ss_pred CCCCH--HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCC
Q psy15362 63 YKIDP--STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN 140 (200)
Q Consensus 63 ~K~~~--~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~ 140 (200)
.|.-+ .+.+....+.++ +.++++.++++.+++..+++.+. . ..+.+.|..+-.++..+++.||++|..- +
T Consensus 191 ~k~Wp~e~~a~li~~l~~~--~~~ivl~~G~~~e~~~~~~i~~~--~--~~~~l~g~~sL~elaali~~a~l~I~nD--S 262 (322)
T PRK10964 191 DKHWPEAHWRELIGLLAPS--GLRIKLPWGAEHEEQRAKRLAEG--F--PYVEVLPKLSLEQVARVLAGAKAVVSVD--T 262 (322)
T ss_pred cccCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHcc--C--CcceecCCCCHHHHHHHHHhCCEEEecC--C
Confidence 45533 455555555432 56777763232333444444332 2 3467789888899999999999999432 1
Q ss_pred CchHHHHHHHcCCCeeecCCCcchhh
Q psy15362 141 GHTTSMDVLWTGTPVVTLPGETLASR 166 (200)
Q Consensus 141 ~g~~~lEAma~G~PVV~~~g~~~~~r 166 (200)
| .+==|-|+|+|+|+.-|.+-..+
T Consensus 263 G--p~HlA~A~g~p~valfGpt~p~~ 286 (322)
T PRK10964 263 G--LSHLTAALDRPNITLYGPTDPGL 286 (322)
T ss_pred c--HHHHHHHhCCCEEEEECCCCccc
Confidence 2 24447889999999877654333
No 165
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=94.74 E-value=0.7 Score=38.69 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCC-cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHH
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFP-AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMD 147 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~-~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lE 147 (200)
+.+++..+.++. +.+++++... ..+.+..+++.+.+.-. .++. ...+.+++..+++.||+++..-- -.++=
T Consensus 193 l~~~l~~l~~~~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~-~~i~--~~~~~~e~~~~i~~~~~vI~~Rl----H~~I~ 264 (298)
T TIGR03609 193 LLRALDRLQRDT-GAFVLFLPFQQPQDLPLARALRDQLLGP-AEVL--SPLDPEELLGLFASARLVIGMRL----HALIL 264 (298)
T ss_pred HHHHHHHHHHhh-CCeEEEEeCCcchhHHHHHHHHHhcCCC-cEEE--ecCCHHHHHHHHhhCCEEEEech----HHHHH
Confidence 444445554443 4556555432 23344444555544322 4443 55567899999999999986533 46889
Q ss_pred HHHcCCCeeecCCCcchhhhHHHHHhhcCCCcc
Q psy15362 148 VLWTGTPVVTLPGETLASRVAASQLATLGCPEL 180 (200)
Q Consensus 148 Ama~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ 180 (200)
|+.+|+|+|...- +....++++.+|++.+
T Consensus 265 A~~~gvP~i~i~y----~~K~~~~~~~~g~~~~ 293 (298)
T TIGR03609 265 AAAAGVPFVALSY----DPKVRAFAADAGVPGF 293 (298)
T ss_pred HHHcCCCEEEeec----cHHHHHHHHHhCCCcc
Confidence 9999999998642 2345678888888865
No 166
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.64 E-value=0.82 Score=39.20 Aligned_cols=100 Identities=19% Similarity=0.126 Sum_probs=64.5
Q ss_pred CEEEEEeC--C-CCCCCH--HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc
Q psy15362 53 AIVYCNFN--Q-LYKIDP--STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG 127 (200)
Q Consensus 53 ~~v~~~~~--r-~~K~~~--~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~ 127 (200)
..++.+.+ + ..|.-+ .+-+....+.++. .++++.|++ .+.+..+++.+.++-. +.+.|..+-.++..++
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~-~e~e~~~~i~~~~~~~---~~l~~k~sL~e~~~li 249 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGP-DEEERAEEIAKGLPNA---VILAGKTSLEELAALI 249 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecCh-HHHHHHHHHHHhcCCc---cccCCCCCHHHHHHHH
Confidence 34444444 3 456643 4444444455544 788888864 4556666677665432 3389999989999999
Q ss_pred ccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCc
Q psy15362 128 QLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 162 (200)
Q Consensus 128 ~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~ 162 (200)
..||+++..- +|. +==|-|.|+|+|+.-|.+
T Consensus 250 ~~a~l~I~~D--Sg~--~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 250 AGADLVIGND--SGP--MHLAAALGTPTIALYGPT 280 (334)
T ss_pred hcCCEEEccC--ChH--HHHHHHcCCCEEEEECCC
Confidence 9999998432 121 344778999999976654
No 167
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=94.24 E-value=0.44 Score=41.66 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=65.6
Q ss_pred hhhhhhhcCCC---CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCC-cEEEEEcCCcccHHHHHHHHH----HcC----C
Q psy15362 40 VITSRQQYGLP---EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPN-SILWLLKFPAVGEANIQATAQ----ALG----L 107 (200)
Q Consensus 40 ~~~~R~~l~l~---~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~-~~l~ivG~~~~~~~~l~~~~~----~~g----l 107 (200)
+....+++|++ ++...+..++-..--...++++|+ +.+. +++++-+ +.....+++... ..| .
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~Ye~~~l~~ll~~~~----~~~~pv~llvp~--g~~~~~~~~~~~~~~~~~g~~~~~ 241 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFCYENAALASLLDAWA----ASPKPVHLLVPE--GRALNSLAAWLGDALLQAGDSWQR 241 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEeCCchHHHHHHHHHh----cCCCCeEEEecC--CccHHHHHHHhccccccCcccccc
Confidence 34566788986 444443333322211345566655 3343 4454543 344555654443 111 1
Q ss_pred CCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeee
Q psy15362 108 DQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 108 ~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~ 157 (200)
..=++++++++|.+++-.++.+||+.+.= |==+.+=|+++|+|.|-
T Consensus 242 g~l~l~~lPF~~Q~~yD~LLw~cD~NfVR----GEDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 242 GNLTLHVLPFVPQDDYDRLLWACDFNFVR----GEDSFVRAQWAGKPFVW 287 (374)
T ss_pred CCeEEEECCCCCHHHHHHHHHhCccceEe----cchHHHHHHHhCCCceE
Confidence 01368889999999999999999997631 22468899999999995
No 168
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.96 E-value=0.5 Score=33.02 Aligned_cols=75 Identities=12% Similarity=0.039 Sum_probs=50.4
Q ss_pred EEEEcCCcccHHHHHHHHHHcCCCCCcEEE---eccCCH-HHHHhhcccccEEEeCCCCCCc----hHHHHHHHcCCCee
Q psy15362 85 LWLLKFPAVGEANIQATAQALGLDQHRILF---SNVAAK-EEHVRRGQLADVCLDTPLCNGH----TTSMDVLWTGTPVV 156 (200)
Q Consensus 85 l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f---~g~~~~-~~~~~~~~~aDv~l~~~~~~~g----~~~lEAma~G~PVV 156 (200)
++++|+.......+++.++++|.. .+++ -|..+. ..+...+..+|+++....+-+- .+--+|-..|+|++
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~--~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGK--LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCE--EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEE
Confidence 577885335578899999999984 4555 222222 2477788899999766544332 34556677899999
Q ss_pred ecCCC
Q psy15362 157 TLPGE 161 (200)
Q Consensus 157 ~~~g~ 161 (200)
...+.
T Consensus 80 ~~~~~ 84 (97)
T PF10087_consen 80 YSRSR 84 (97)
T ss_pred EECCC
Confidence 87644
No 169
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=93.90 E-value=0.53 Score=40.67 Aligned_cols=132 Identities=15% Similarity=0.191 Sum_probs=68.4
Q ss_pred hhhhhhcCCCCCCEEEEEeC----CCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEec
Q psy15362 41 ITSRQQYGLPEDAIVYCNFN----QLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSN 116 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~~----r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g 116 (200)
....+++|++.+..++.=.. ...++...++..+.+.+++..+. ++++... ... +.+.+..+ +.+..
T Consensus 168 ~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~-~~~---~~~~~~~~-----~~i~~ 237 (335)
T PF04007_consen 168 PEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRY-EDQ---RELFEKYG-----VIIPP 237 (335)
T ss_pred hhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCC-cch---hhHHhccC-----ccccC
Confidence 35667899876665543111 12233434444444444455555 5555421 222 22333322 33332
Q ss_pred cCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec-CCCcchhhhHHHHHhhcCCCcceecCHHHHHHHH
Q psy15362 117 VAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL-PGETLASRVAASQLATLGCPELIARTHKEYQDIA 192 (200)
Q Consensus 117 ~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~-~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a 192 (200)
.. -+...++.-||+++. +||+...||...|+|.|++ +|..+. -...+...|+ -+-..|.++-+..+
T Consensus 238 ~~--vd~~~Ll~~a~l~Ig----~ggTMa~EAA~LGtPaIs~~~g~~~~---vd~~L~~~Gl-l~~~~~~~ei~~~v 304 (335)
T PF04007_consen 238 EP--VDGLDLLYYADLVIG----GGGTMAREAALLGTPAISCFPGKLLA---VDKYLIEKGL-LYHSTDPDEIVEYV 304 (335)
T ss_pred CC--CCHHHHHHhcCEEEe----CCcHHHHHHHHhCCCEEEecCCcchh---HHHHHHHCCC-eEecCCHHHHHHHH
Confidence 21 133456778999995 4679999999999999974 554211 0122334455 12225555555544
No 170
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=93.33 E-value=0.77 Score=40.03 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=64.4
Q ss_pred hhhhcCCC--CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHc----C----CCCCcE
Q psy15362 43 SRQQYGLP--EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQAL----G----LDQHRI 112 (200)
Q Consensus 43 ~R~~l~l~--~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~----g----l~~~rv 112 (200)
..+++|++ +++.++..++-..-..+.++++|++ ....+++++-. |.....+++..... | ...=++
T Consensus 170 ~~~~lg~~~~~~~~~vSLF~Ye~~al~~ll~~~~~---~~~pv~lLvp~--Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~ 244 (371)
T TIGR03837 170 LLRRLGVGPEPDALLVSLFCYENAALPALLDALAQ---SGSPVHLLVPE--GRALAAVAAWLGDALLAAGDVHRRGALTV 244 (371)
T ss_pred HHHHcCCCCCCCCeEEEEEecCChhHHHHHHHHHh---CCCCeEEEecC--CccHHHHHHHhCccccCCccccccCceEE
Confidence 45578885 4554443333222334566666652 22234554433 24445555544210 1 001258
Q ss_pred EEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeee
Q psy15362 113 LFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 113 ~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~ 157 (200)
+++++++.+++-.++-+||+-+.= |-=+.+-|.++|+|.|-
T Consensus 245 ~~LPf~~Q~~yD~LLW~cD~NfVR----GEDSFVRAqWAgkPfvW 285 (371)
T TIGR03837 245 AVLPFVPQDDYDRLLWACDLNFVR----GEDSFVRAQWAGKPFVW 285 (371)
T ss_pred EEcCCCChhhHHHHHHhChhcEee----chhHHHHHHHcCCCcee
Confidence 889999999999999999997631 22468999999999995
No 171
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.86 E-value=0.44 Score=40.25 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=65.0
Q ss_pred hhhhhcCCCCCCEEEEEeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCC-----------
Q psy15362 42 TSRQQYGLPEDAIVYCNFNQLYK-IDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQ----------- 109 (200)
Q Consensus 42 ~~R~~l~l~~~~~v~~~~~r~~K-~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~----------- 109 (200)
.+++++|+++..-...++....+ ..+.+|+.|++..+ | +.+++.+ +. .+.+.++..+...
T Consensus 166 ~l~~rlgv~ek~~~~~slFaY~npa~~s~ieq~r~a~~--p-~llL~~e--~~---~~~~~~~~~~~~~~a~Gdv~~~~~ 237 (370)
T COG4394 166 YLLERLGVNEKYDLIASLFAYENPALPSWIEQLRKADK--P-ILLLIPE--GK---TQANFAKYFDNNNNADGDVFQTAK 237 (370)
T ss_pred HHHHHcCCchhhchhhhhhccCCcchHHHHHHHHhcCC--C-EEEEccc--ch---HHHHHHHHcCCCcccccchhcccc
Confidence 56788999875333233323333 45667776664322 2 3344433 22 2334444433321
Q ss_pred CcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeee
Q psy15362 110 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 110 ~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~ 157 (200)
=||..++++|.+++-.++..||+-+.- |--+..-|..+|+|.+-
T Consensus 238 lrvvklPFvpqddyd~LL~lcD~n~VR----GEDSFVRAq~agkPflW 281 (370)
T COG4394 238 LRVVKLPFVPQDDYDELLWLCDFNLVR----GEDSFVRAQLAGKPFLW 281 (370)
T ss_pred eEEEEecCCcHhHHHHHHHhcccceee----cchHHHHHHHcCCCcEE
Confidence 267789999999999999999998742 33568899999999995
No 172
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=92.35 E-value=1.8 Score=38.01 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=56.4
Q ss_pred HHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCC
Q psy15362 98 IQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGC 177 (200)
Q Consensus 98 l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~ 177 (200)
.+..+....-. +++++..--..+++...++.+|+.+-.=. -+++=||+.|+|+|+..-+ ....++++.+|+
T Consensus 255 a~~ia~~~~~~-~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~----HsaI~al~~g~p~i~i~Y~----~K~~~l~~~~gl 325 (385)
T COG2327 255 ADAIAQLVLDS-AEILVSSDEYAEELGGILAACDLIVGMRL----HSAIMALAFGVPAIAIAYD----PKVRGLMQDLGL 325 (385)
T ss_pred HHHHHhhcCCc-cceEeecchHHHHHHHHhccCceEEeehh----HHHHHHHhcCCCeEEEeec----HHHHHHHHHcCC
Confidence 34444443322 77877654334666778999999985422 4688999999999986432 234578889999
Q ss_pred Ccceec----CHHHHHHHHHH
Q psy15362 178 PELIAR----THKEYQDIAIR 194 (200)
Q Consensus 178 ~~~ia~----~~~~yv~~a~~ 194 (200)
+++.-+ +.+.......+
T Consensus 326 ~~~~~~i~~~~~~~l~~~~~e 346 (385)
T COG2327 326 PGFAIDIDPLDAEILSAVVLE 346 (385)
T ss_pred CcccccCCCCchHHHHHHHHH
Confidence 986543 34444444433
No 173
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=91.78 E-value=4.3 Score=38.57 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=64.1
Q ss_pred CCCCCEEEEEeCCC--CCCCHH-H---HHHHHHHHHHCCC-----cEEEEEcCCcccHH---HHHHHHHH--------cC
Q psy15362 49 LPEDAIVYCNFNQL--YKIDPS-T---LQMWVNVLKAVPN-----SILWLLKFPAVGEA---NIQATAQA--------LG 106 (200)
Q Consensus 49 l~~~~~v~~~~~r~--~K~~~~-~---l~a~~~i~~~~p~-----~~l~ivG~~~~~~~---~l~~~~~~--------~g 106 (200)
++++.+..+.+-|. +|.... + +..+.+|++ .|+ ..+++.|...|... .+-+++.+ -.
T Consensus 440 ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~-~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~ 518 (713)
T PF00343_consen 440 LDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKN-NPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPE 518 (713)
T ss_dssp --TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHH-STTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TT
T ss_pred CCcchhhhhhhhhcccccccCcccccHHHHHHHHHh-cccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChh
Confidence 67788777888776 587654 2 344455554 443 56777775334322 22233322 23
Q ss_pred CCCC--cEEEeccCCHHHHHhhcccccEEEeCC--CCC-CchHHHHHHHcCCCeeec-CCCc
Q psy15362 107 LDQH--RILFSNVAAKEEHVRRGQLADVCLDTP--LCN-GHTTSMDVLWTGTPVVTL-PGET 162 (200)
Q Consensus 107 l~~~--rv~f~g~~~~~~~~~~~~~aDv~l~~~--~~~-~g~~~lEAma~G~PVV~~-~g~~ 162 (200)
+. + ||+|+..-.-.--..+++++||.+.++ +.+ +|++-+=+|.-|.+-+++ +|..
T Consensus 519 v~-~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~n 579 (713)
T PF00343_consen 519 VG-DRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWN 579 (713)
T ss_dssp TC-CGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCH
T ss_pred hc-cceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchh
Confidence 43 5 799999876544455689999999876 444 699999999999999975 6654
No 174
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=90.95 E-value=3.2 Score=27.45 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=43.3
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHH-HHHHHHHcCCCCCcEEE
Q psy15362 50 PEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEAN-IQATAQALGLDQHRILF 114 (200)
Q Consensus 50 ~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~-l~~~~~~~gl~~~rv~f 114 (200)
|+...|+.+-+|-......+-+++.+++++.|+..| +-|+.....+. .++.+++.|+. .+.|
T Consensus 1 p~g~rVli~GgR~~~D~~~i~~~Ld~~~~~~~~~~l-vhGga~~GaD~iA~~wA~~~gv~--~~~~ 63 (71)
T PF10686_consen 1 PEGMRVLITGGRDWTDHELIWAALDKVHARHPDMVL-VHGGAPKGADRIAARWARERGVP--VIRF 63 (71)
T ss_pred CCCCEEEEEECCccccHHHHHHHHHHHHHhCCCEEE-EECCCCCCHHHHHHHHHHHCCCe--eEEe
Confidence 445567777788888888888899999999998774 44532134444 46788888884 3444
No 175
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=89.11 E-value=2.2 Score=39.25 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=37.4
Q ss_pred CcEEEeccCCHHHHHhhcccccEEEe-CCCCCCchHHHHHHHcCCCeeec
Q psy15362 110 HRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 110 ~rv~f~g~~~~~~~~~~~~~aDv~l~-~~~~~~g~~~lEAma~G~PVV~~ 158 (200)
+-|.=.|.++.+|+..+++.+-+|+- -+|++| -+-+||+|+|+|.|-.
T Consensus 322 ~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~Eg-PaPlEAia~G~vFlNp 370 (559)
T PF15024_consen 322 SFVKNHGILSGDEFQQLLRKAKVFIGLGFPYEG-PAPLEAIANGCVFLNP 370 (559)
T ss_pred hhhhhcCcCCHHHHHHHHHhhhEeeecCCCCCC-CChHHHHHcCCccccc
Confidence 34444566777899999999999984 467774 4589999999998853
No 176
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=89.00 E-value=2.7 Score=33.57 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=49.2
Q ss_pred HHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc-CCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCee
Q psy15362 78 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-AAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV 156 (200)
Q Consensus 78 ~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~-~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV 156 (200)
+....-+++++|........+++.++..|-..-.=+|+|- ..+... .-+..=|+.+..-+......+.||..+|+|+|
T Consensus 57 ~~i~~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~Pdlliv~dp~~~~~Av~EA~~l~IP~I 135 (196)
T TIGR01012 57 VRIEPEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREPEVVVVTDPRADHQALKEASEVGIPIV 135 (196)
T ss_pred HHhhCCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCCCEEEEECCccccHHHHHHHHcCCCEE
Confidence 3333678889987544455677777766543111134443 332211 23456677765555556789999999999999
Q ss_pred ec
Q psy15362 157 TL 158 (200)
Q Consensus 157 ~~ 158 (200)
+.
T Consensus 136 ai 137 (196)
T TIGR01012 136 AL 137 (196)
T ss_pred EE
Confidence 85
No 177
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=88.21 E-value=10 Score=31.91 Aligned_cols=102 Identities=14% Similarity=0.046 Sum_probs=57.1
Q ss_pred CEEEEEeCCCCCC---CH----HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccC--CHHHH
Q psy15362 53 AIVYCNFNQLYKI---DP----STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA--AKEEH 123 (200)
Q Consensus 53 ~~v~~~~~r~~K~---~~----~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~--~~~~~ 123 (200)
.++-+.+|...|. ++ .+..++.+++++.. ..+++--. ....+..+..++.. +...-.++-..- ...-+
T Consensus 162 q~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g-~~~lisfS-RRTp~~~~s~l~~~-l~s~~~i~w~~~d~g~NPY 238 (329)
T COG3660 162 QRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQG-GSFLISFS-RRTPDTVKSILKNN-LNSSPGIVWNNEDTGYNPY 238 (329)
T ss_pred ceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCC-ceEEEEee-cCCcHHHHHHHHhc-cccCceeEeCCCCCCCCch
Confidence 3454555554442 23 24445555555443 34444322 23345666666652 221334443333 23456
Q ss_pred HhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 124 VRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 124 ~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
..++..||.++.+-. +-+.+.||.+.|+||-+..
T Consensus 239 ~~~La~Adyii~TaD--SinM~sEAasTgkPv~~~~ 272 (329)
T COG3660 239 IDMLAAADYIISTAD--SINMCSEAASTGKPVFILE 272 (329)
T ss_pred HHHHhhcceEEEecc--hhhhhHHHhccCCCeEEEe
Confidence 677889999997632 1255899999999999853
No 178
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=88.13 E-value=7.1 Score=37.30 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=70.7
Q ss_pred CCCCCEEEEEeCCC--CCCCHHHH----HHHHHHH-HHCCCcEEEEEcCCcccH----HHH---HHHHHHcCCCCCcEEE
Q psy15362 49 LPEDAIVYCNFNQL--YKIDPSTL----QMWVNVL-KAVPNSILWLLKFPAVGE----ANI---QATAQALGLDQHRILF 114 (200)
Q Consensus 49 l~~~~~v~~~~~r~--~K~~~~~l----~a~~~i~-~~~p~~~l~ivG~~~~~~----~~l---~~~~~~~gl~~~rv~f 114 (200)
+.+++++.+.+-|. +|.+...+ +....+. ...|-..+++.|...|.. .-+ ...++.-+.. .+|+|
T Consensus 483 ~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~-lkVvF 561 (750)
T COG0058 483 VDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNK-LKVVF 561 (750)
T ss_pred cCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhccc-ceEEE
Confidence 44667777777775 58754332 2333334 334556667777543432 222 2333433333 67999
Q ss_pred eccCCHHHHHhhcccccEEEeCC--CCC-CchHHHHHHHcCCCeeec-CCCc
Q psy15362 115 SNVAAKEEHVRRGQLADVCLDTP--LCN-GHTTSMDVLWTGTPVVTL-PGET 162 (200)
Q Consensus 115 ~g~~~~~~~~~~~~~aDv~l~~~--~~~-~g~~~lEAma~G~PVV~~-~g~~ 162 (200)
+..-+-.--..++.+|||-+..| +.| +|++-+=++.-|.+-+++ +|..
T Consensus 562 l~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGan 613 (750)
T COG0058 562 LPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGAN 613 (750)
T ss_pred eCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHH
Confidence 98765433334689999998766 444 699999999999999974 6654
No 179
>PRK14986 glycogen phosphorylase; Provisional
Probab=87.88 E-value=2.2 Score=41.01 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCCCCEEEEEeCCC--CCCCHH-HHH---HHHHHHHHCCC-----cEEEEEcCCcccH----HHHHH---HHH----HcC
Q psy15362 49 LPEDAIVYCNFNQL--YKIDPS-TLQ---MWVNVLKAVPN-----SILWLLKFPAVGE----ANIQA---TAQ----ALG 106 (200)
Q Consensus 49 l~~~~~v~~~~~r~--~K~~~~-~l~---a~~~i~~~~p~-----~~l~ivG~~~~~~----~~l~~---~~~----~~g 106 (200)
++++.+..+.+-|. +|.+.. ++. .+.+|++ .|+ ..+++.|...|.. .-++. .++ .-.
T Consensus 539 ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~-~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~ 617 (815)
T PRK14986 539 VNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKA-DPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQ 617 (815)
T ss_pred cCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHh-CCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChh
Confidence 56676667777775 588765 444 4555544 443 5677766533432 22221 222 112
Q ss_pred CCCC--cEEEeccCCHHHHHhhcccccEEEeCC--CCC-CchHHHHHHHcCCCeee-cCCCc
Q psy15362 107 LDQH--RILFSNVAAKEEHVRRGQLADVCLDTP--LCN-GHTTSMDVLWTGTPVVT-LPGET 162 (200)
Q Consensus 107 l~~~--rv~f~g~~~~~~~~~~~~~aDv~l~~~--~~~-~g~~~lEAma~G~PVV~-~~g~~ 162 (200)
+. + +|+|+..-.-.--..+..+|||.+..+ +.| +|++-+=+|.-|.+.++ .+|..
T Consensus 618 v~-~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~n 678 (815)
T PRK14986 618 IG-DKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGAN 678 (815)
T ss_pred hc-CceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCch
Confidence 33 5 899998766444444689999998776 344 69999999999999996 57754
No 180
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=87.73 E-value=4.3 Score=28.71 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=45.5
Q ss_pred EEEEEcCCccc----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHH--HcCCCeee
Q psy15362 84 ILWLLKFPAVG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVT 157 (200)
Q Consensus 84 ~l~ivG~~~~~----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAm--a~G~PVV~ 157 (200)
++++++.+|.. .+.+++.+++.|++ +.+. ..+..++......+|+++.+.....-..-++.. ..|+||..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~---~~i~-a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP---LEAA-AGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc---EEEE-EeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEE
Confidence 45555544432 36788999999996 3322 334456777788999998765322222233333 35899998
Q ss_pred cCCC
Q psy15362 158 LPGE 161 (200)
Q Consensus 158 ~~g~ 161 (200)
.+..
T Consensus 78 I~~~ 81 (99)
T cd05565 78 TTGK 81 (99)
T ss_pred eCHH
Confidence 7643
No 181
>KOG3349|consensus
Probab=87.69 E-value=10 Score=29.22 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=58.2
Q ss_pred EEEEEeCCCCCCCHHHHHHH-----HHHHHHCCCcEEEE-EcCCccc-HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhh
Q psy15362 54 IVYCNFNQLYKIDPSTLQMW-----VNVLKAVPNSILWL-LKFPAVG-EANIQATAQALGLDQHRILFSNVAAKEEHVRR 126 (200)
Q Consensus 54 ~v~~~~~r~~K~~~~~l~a~-----~~i~~~~p~~~l~i-vG~~~~~-~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~ 126 (200)
.+|+.+|.-. .|+++.++ -+-+++..=.||+| +|.+... .+......+..|+. |....+.| .+...
T Consensus 5 ~vFVTVGtT~--Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~---id~y~f~p--sl~e~ 77 (170)
T KOG3349|consen 5 TVFVTVGTTS--FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLT---IDGYDFSP--SLTED 77 (170)
T ss_pred EEEEEecccc--HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeE---EEEEecCc--cHHHH
Confidence 5677777643 34555433 22334444456666 5643221 12233333555665 33333343 23334
Q ss_pred cccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhH
Q psy15362 127 GQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVA 168 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~ 168 (200)
++.||+++. ..|.-+++|.+..|+|.|+...+.....+.
T Consensus 78 I~~AdlVIs---HAGaGS~letL~l~KPlivVvNd~LMDNHQ 116 (170)
T KOG3349|consen 78 IRSADLVIS---HAGAGSCLETLRLGKPLIVVVNDSLMDNHQ 116 (170)
T ss_pred HhhccEEEe---cCCcchHHHHHHcCCCEEEEeChHhhhhHH
Confidence 568999984 345567999999999999876655444443
No 182
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=87.33 E-value=5.3 Score=33.29 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHCC----CcEEEEEcCCcccH--HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC
Q psy15362 68 STLQMWVNVLKAVP----NSILWLLKFPAVGE--ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG 141 (200)
Q Consensus 68 ~~l~a~~~i~~~~p----~~~l~ivG~~~~~~--~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~ 141 (200)
.|++++-++-+..+ -+-++++-. +... -++-+-++.+|+.-.|..|++-.+...+...+ .+|+||.+-+
T Consensus 18 p~vk~Ll~lN~~~~~e~~~VEVVllSR-NspdTGlRv~nSI~hygL~ItR~~ft~G~~~~~Yl~af-~v~LFLSan~--- 92 (264)
T PF06189_consen 18 PFVKALLALNDLLPEEDPLVEVVLLSR-NSPDTGLRVFNSIRHYGLDITRAAFTGGESPYPYLKAF-NVDLFLSANE--- 92 (264)
T ss_pred HHHHHHHHhhccccccCCceEEEEEec-CCHHHHHHHHHhHHHhCCcceeeeecCCCCHHHHHHHh-CCceEeeCCH---
Confidence 36777776665554 355666653 3222 25667899999988999999988766676655 6899997755
Q ss_pred chHHHHHHHcCCCeeec
Q psy15362 142 HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 142 g~~~lEAma~G~PVV~~ 158 (200)
.-+-+|+.+|.|--+.
T Consensus 93 -~DV~~Ai~~G~~Aa~v 108 (264)
T PF06189_consen 93 -DDVQEAIDAGIPAATV 108 (264)
T ss_pred -HHHHHHHHcCCCcEEe
Confidence 5699999999997654
No 183
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=86.98 E-value=2.4 Score=40.64 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=71.2
Q ss_pred CCCCCEEEEEeCCC--CCCCHH-HHH---HHHHHHHHCCC-----cEEEEEcCCcccH---HHHHHHHHHcC--------
Q psy15362 49 LPEDAIVYCNFNQL--YKIDPS-TLQ---MWVNVLKAVPN-----SILWLLKFPAVGE---ANIQATAQALG-------- 106 (200)
Q Consensus 49 l~~~~~v~~~~~r~--~K~~~~-~l~---a~~~i~~~~p~-----~~l~ivG~~~~~~---~~l~~~~~~~g-------- 106 (200)
++++.+..+.+-|. +|.+.. ++. .+.+|++ .|+ ..+++.|...|.. ..+-+++.+..
T Consensus 523 ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~-~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~ 601 (794)
T TIGR02093 523 VDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKE-DPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPA 601 (794)
T ss_pred cCccccchhhheechhhhHHHHHHhhhHHHHHHHHh-CCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChh
Confidence 55676666666675 587655 333 4445544 443 3677776533432 22333333332
Q ss_pred CCCC--cEEEeccCCHHHHHhhcccccEEEeCC--CCC-CchHHHHHHHcCCCeeec-CCCc
Q psy15362 107 LDQH--RILFSNVAAKEEHVRRGQLADVCLDTP--LCN-GHTTSMDVLWTGTPVVTL-PGET 162 (200)
Q Consensus 107 l~~~--rv~f~g~~~~~~~~~~~~~aDv~l~~~--~~~-~g~~~lEAma~G~PVV~~-~g~~ 162 (200)
+. + +|+|+..-.-.--..++.+|||....| +.| +|++-+=+|.-|.+.+++ +|..
T Consensus 602 v~-~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGan 662 (794)
T TIGR02093 602 VG-DKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGAN 662 (794)
T ss_pred hC-CceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchh
Confidence 43 5 899998766444444689999998766 344 699999999999999975 7754
No 184
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=86.92 E-value=2.5 Score=40.62 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=71.4
Q ss_pred CCCCCEEEEEeCCC--CCCCHH-H---HHHHHHHHHHCCC-----cEEEEEcCCcccHH---HHHHHHHHc--------C
Q psy15362 49 LPEDAIVYCNFNQL--YKIDPS-T---LQMWVNVLKAVPN-----SILWLLKFPAVGEA---NIQATAQAL--------G 106 (200)
Q Consensus 49 l~~~~~v~~~~~r~--~K~~~~-~---l~a~~~i~~~~p~-----~~l~ivG~~~~~~~---~l~~~~~~~--------g 106 (200)
++++.+..+.+-|. +|.+.. + ++.+.+|++ .|+ ..+++.|...|... .+-+++.+. .
T Consensus 526 ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~-~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~ 604 (797)
T cd04300 526 VDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKE-NPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPD 604 (797)
T ss_pred cCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHh-CCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChh
Confidence 56777777777776 588765 3 344555554 443 56666665334321 222222221 2
Q ss_pred CCCC--cEEEeccCCHHHHHhhcccccEEEeCC--CCC-CchHHHHHHHcCCCeeec-CCCc
Q psy15362 107 LDQH--RILFSNVAAKEEHVRRGQLADVCLDTP--LCN-GHTTSMDVLWTGTPVVTL-PGET 162 (200)
Q Consensus 107 l~~~--rv~f~g~~~~~~~~~~~~~aDv~l~~~--~~~-~g~~~lEAma~G~PVV~~-~g~~ 162 (200)
+. + +|+|+..-.-.--..++.+|||....| +.| +|++-+=+|.-|.+.+++ +|..
T Consensus 605 v~-~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGan 665 (797)
T cd04300 605 VG-DKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGAN 665 (797)
T ss_pred cC-CceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchh
Confidence 33 5 899998765443344689999998766 344 699999999999999975 6654
No 185
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=85.51 E-value=10 Score=30.09 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=35.0
Q ss_pred cEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 111 RILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 111 rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
........+..++..+++.+|+++.+-- -..+=|+++|+|+|+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~Is~Rl----H~~I~a~~~g~P~i~i~ 283 (286)
T PF04230_consen 239 VIIIDYSLSPDELLELISQADLVISMRL----HGAILALSLGVPVIAIS 283 (286)
T ss_pred eeEecCCCCHHHHHHHHhcCCEEEecCC----HHHHHHHHcCCCEEEEe
Confidence 3344445567999999999999997643 45888999999999854
No 186
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=84.99 E-value=2.7 Score=29.77 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=40.9
Q ss_pred hcCCCCCCEEEEEeCC----CCC-CCH-HHHHHHHHHHHHCCCcEEEEEcCCcc-cHHHHHHHHHHcCCCCCcEE
Q psy15362 46 QYGLPEDAIVYCNFNQ----LYK-IDP-STLQMWVNVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRIL 113 (200)
Q Consensus 46 ~l~l~~~~~v~~~~~r----~~K-~~~-~~l~a~~~i~~~~p~~~l~ivG~~~~-~~~~l~~~~~~~gl~~~rv~ 113 (200)
..++|.+.+..--.+. ..+ ... .=...+.++++..|+.+++++|+.+. +-+...+.++++ ++||.
T Consensus 22 ~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~---P~~i~ 93 (100)
T PF09949_consen 22 RNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRF---PGRIL 93 (100)
T ss_pred hcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHC---CCCEE
Confidence 4578888765432221 111 122 34567788999999999999998664 335556677764 25554
No 187
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=84.49 E-value=6.1 Score=31.72 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=47.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHcCCCC--CcEEEec-cCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCee
Q psy15362 80 VPNSILWLLKFPAVGEANIQATAQALGLDQ--HRILFSN-VAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV 156 (200)
Q Consensus 80 ~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~--~rv~f~g-~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV 156 (200)
...-+++++|........+++.++..|-.. + +|+| ...+.... .+..=|+++..-+......+.||...|.|+|
T Consensus 65 ~~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~--RWlgG~LTN~~~~-~~~~Pdliiv~dp~~~~~AI~EA~kl~IP~I 141 (204)
T PRK04020 65 YEPEKILVVSSRQYGQKPVQKFAEVVGAKAITG--RFIPGTLTNPSLK-GYIEPDVVVVTDPRGDAQAVKEAIEVGIPVV 141 (204)
T ss_pred hcCCeEEEEeCCHHHHHHHHHHHHHhCCeeecC--ccCCCcCcCcchh-ccCCCCEEEEECCcccHHHHHHHHHhCCCEE
Confidence 345678888875444566777777766431 2 2444 33333222 2335566655445455689999999999999
Q ss_pred ec
Q psy15362 157 TL 158 (200)
Q Consensus 157 ~~ 158 (200)
+.
T Consensus 142 ai 143 (204)
T PRK04020 142 AL 143 (204)
T ss_pred EE
Confidence 85
No 188
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=83.55 E-value=11 Score=31.25 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH-cCCCeeecCCCcc-hhh--hHHHH
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETL-ASR--VAASQ 171 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~~~-~~r--~~~~~ 171 (200)
..|++..+++|+. +++-..+.+++..+...+|++=-++..-.-..++++++ .|+||+...|... .+. .....
T Consensus 69 ~~L~~~~~~~Gl~----~~Tev~d~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~ 144 (250)
T PRK13397 69 RYLHEVCQEFGLL----SVSEIMSERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSY 144 (250)
T ss_pred HHHHHHHHHcCCC----EEEeeCCHHHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHH
Confidence 4677788899996 55555555555555567999966665544567888886 8999999988332 121 22334
Q ss_pred HhhcCCCcc
Q psy15362 172 LATLGCPEL 180 (200)
Q Consensus 172 ~~~~g~~~~ 180 (200)
+...|.+++
T Consensus 145 i~~~Gn~~i 153 (250)
T PRK13397 145 LQDTGKSNI 153 (250)
T ss_pred HHHcCCCeE
Confidence 445566543
No 189
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=83.40 E-value=3.5 Score=30.69 Aligned_cols=38 Identities=21% Similarity=0.078 Sum_probs=25.9
Q ss_pred hhcccccEEEeCCC--CCCchH---HHHHHHcCCCeeecCCCc
Q psy15362 125 RRGQLADVCLDTPL--CNGHTT---SMDVLWTGTPVVTLPGET 162 (200)
Q Consensus 125 ~~~~~aDv~l~~~~--~~~g~~---~lEAma~G~PVV~~~g~~ 162 (200)
.++..||+++.-|- |-+-++ .-=|.|.|+|.|+...+.
T Consensus 68 ~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~ 110 (141)
T PF11071_consen 68 TLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEE 110 (141)
T ss_pred HHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchh
Confidence 35678999987663 223344 444678999999987654
No 190
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=82.73 E-value=3.8 Score=39.37 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=70.9
Q ss_pred CCCCCEEEEEeCCC--CCCCHH-HHH---HHHHHHHHCCC-----cEEEEEcCCcccHH---HHHHHHHHcC--------
Q psy15362 49 LPEDAIVYCNFNQL--YKIDPS-TLQ---MWVNVLKAVPN-----SILWLLKFPAVGEA---NIQATAQALG-------- 106 (200)
Q Consensus 49 l~~~~~v~~~~~r~--~K~~~~-~l~---a~~~i~~~~p~-----~~l~ivG~~~~~~~---~l~~~~~~~g-------- 106 (200)
++++.+..+.+-|. +|.+.. ++. .+.+|++ .|+ ..+++.|...|... .+-+++.+..
T Consensus 525 ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~-~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~ 603 (798)
T PRK14985 525 INPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRE-NPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPL 603 (798)
T ss_pred cCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHh-CCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChh
Confidence 56777766777775 587654 433 3445544 454 56777775334322 2222332221
Q ss_pred CCCC--cEEEeccCCHHHHHhhcccccEEEeCC--CCC-CchHHHHHHHcCCCeee-cCCCc
Q psy15362 107 LDQH--RILFSNVAAKEEHVRRGQLADVCLDTP--LCN-GHTTSMDVLWTGTPVVT-LPGET 162 (200)
Q Consensus 107 l~~~--rv~f~g~~~~~~~~~~~~~aDv~l~~~--~~~-~g~~~lEAma~G~PVV~-~~g~~ 162 (200)
+. + +|+|+..-.-.--..++.+|||....| +.| +|++-+=+|.-|.+.++ .+|..
T Consensus 604 v~-~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGan 664 (798)
T PRK14985 604 VG-DKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGAN 664 (798)
T ss_pred hC-CceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchH
Confidence 22 4 899998866444444689999998766 344 69999999999999996 57754
No 191
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=81.88 E-value=13 Score=37.13 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=48.7
Q ss_pred EEEEcCCcccHHHHHHHHHHc-CCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecC
Q psy15362 85 LWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 85 l~ivG~~~~~~~~l~~~~~~~-gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~ 159 (200)
++.+++ ...+..+++++.+ ++. .+-+...+.+++..+++.+|+++...|... ..++..|+.+|+++++..
T Consensus 608 lV~VaD--~~~~~a~~la~~~~~~~---~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 608 HVIVAS--LYLKDAKETVEGIENAE---AVQLDVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred EEEEEC--CCHHHHHHHHHhcCCCc---eEEeecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 566665 3345667777765 432 223334456788888888999998888765 467888889999999864
No 192
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=81.20 E-value=12 Score=31.02 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH-cCCCeeecCCCcc-hhhh--HHH
Q psy15362 95 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETL-ASRV--AAS 170 (200)
Q Consensus 95 ~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~~~-~~r~--~~~ 170 (200)
...|++.++++|+. +++-..+.+++..+...+|++--++..-.-..++++.+ .|+||+...|... .+.+ ...
T Consensus 78 l~~l~~~~~~~Gl~----~~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave 153 (260)
T TIGR01361 78 LKLLRRAADEHGLP----VVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAE 153 (260)
T ss_pred HHHHHHHHHHhCCC----EEEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 35678889999996 45444443444444456898876765544566777776 8999999888541 2222 234
Q ss_pred HHhhcCCCc
Q psy15362 171 QLATLGCPE 179 (200)
Q Consensus 171 ~~~~~g~~~ 179 (200)
.+...|.++
T Consensus 154 ~i~~~Gn~~ 162 (260)
T TIGR01361 154 YILSSGNGN 162 (260)
T ss_pred HHHHcCCCc
Confidence 444556654
No 193
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=80.96 E-value=7.4 Score=29.09 Aligned_cols=67 Identities=21% Similarity=0.166 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHcCCCCCcEEEeccCCH-H-----------------------------HHHhhcccccEEEeCCC--CC
Q psy15362 93 VGEANIQATAQALGLDQHRILFSNVAAK-E-----------------------------EHVRRGQLADVCLDTPL--CN 140 (200)
Q Consensus 93 ~~~~~l~~~~~~~gl~~~rv~f~g~~~~-~-----------------------------~~~~~~~~aDv~l~~~~--~~ 140 (200)
.+++++++-+++.+++ |.|.+.+.. + ....++..||+.+.-|- |-
T Consensus 12 dWRe~I~~ga~~~~L~---v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrFGekYK 88 (144)
T TIGR03646 12 DWREEIKEGAKSKNLP---IVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALFGEKYK 88 (144)
T ss_pred hHHHHHHHHHHHcCCC---eEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEechHHH
Confidence 4567777777777776 777766532 1 12235677899986653 22
Q ss_pred CchHH---HHHHHcCCCeeecCCCc
Q psy15362 141 GHTTS---MDVLWTGTPVVTLPGET 162 (200)
Q Consensus 141 ~g~~~---lEAma~G~PVV~~~g~~ 162 (200)
+-++. --|.|.|+|.|+...+.
T Consensus 89 QWNaAfDAg~aaAlgKplI~lh~~~ 113 (144)
T TIGR03646 89 QWNAAFDAGYAAALGKPLIILRPEE 113 (144)
T ss_pred HHHHHhhHHHHHHcCCCeEEecchh
Confidence 33443 44678999999987653
No 194
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=80.78 E-value=5.1 Score=33.19 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=46.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHcCCCC--CcEEEec-cCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec
Q psy15362 82 NSILWLLKFPAVGEANIQATAQALGLDQ--HRILFSN-VAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 82 ~~~l~ivG~~~~~~~~l~~~~~~~gl~~--~rv~f~g-~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~ 158 (200)
...++++|........+++.++..|-.. .| |+| ...+. +...+..=|+++.+-|..-...+.||-.+|+|||+.
T Consensus 71 ~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~R--w~pGtlTN~-~~~~f~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal 147 (249)
T PTZ00254 71 PADVVVVSSRPYGQRAVLKFAQYTGASAIAGR--FTPGTFTNQ-IQKKFMEPRLLIVTDPRTDHQAIREASYVNIPVIAL 147 (249)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHhCCeEECCc--ccCCCCCCc-cccccCCCCEEEEeCCCcchHHHHHHHHhCCCEEEE
Confidence 3556777865445566777777666431 22 333 22222 223345667776655655668999999999999985
No 195
>PRK10494 hypothetical protein; Provisional
Probab=80.06 E-value=9.3 Score=31.73 Aligned_cols=90 Identities=18% Similarity=0.103 Sum_probs=60.2
Q ss_pred HHHHHHHCCCcEEEEEcCCc-----ccHHHHHHHHHHcCCCCCcEEEeccCC--HHHH---HhhcccccEEEeCCCCCCc
Q psy15362 73 WVNVLKAVPNSILWLLKFPA-----VGEANIQATAQALGLDQHRILFSNVAA--KEEH---VRRGQLADVCLDTPLCNGH 142 (200)
Q Consensus 73 ~~~i~~~~p~~~l~ivG~~~-----~~~~~l~~~~~~~gl~~~rv~f~g~~~--~~~~---~~~~~~aDv~l~~~~~~~g 142 (200)
-.++.++.|+.++++-|+.+ .+.+.+++.+.++|+..++++.-+.-. .++. ..++..-.+.|-|+.+.-.
T Consensus 112 a~~L~r~~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTsa~Hm~ 191 (259)
T PRK10494 112 GIRLWRANPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLP 191 (259)
T ss_pred HHHHHHhCCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECCHHHHH
Confidence 34567788999999988532 123556788899999867777755432 2322 2234444588888876655
Q ss_pred hHHHHHHHcCCCeeecCCCc
Q psy15362 143 TTSMDVLWTGTPVVTLPGET 162 (200)
Q Consensus 143 ~~~lEAma~G~PVV~~~g~~ 162 (200)
-+...+-..|+.|+..+.+.
T Consensus 192 RA~~~f~~~Gl~v~p~Ptd~ 211 (259)
T PRK10494 192 RAMIFFQQEGLNPLPAPANQ 211 (259)
T ss_pred HHHHHHHHcCCceeecCCcc
Confidence 66777777899999766543
No 196
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=78.10 E-value=19 Score=31.43 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH-cCCCeeecCCC
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGE 161 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~ 161 (200)
..+++.+++.|+. +++-..+..++..+...+|++--++..-.-..++++++ .|+||+...|-
T Consensus 172 ~~L~~~~~~~Gl~----~~t~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~ 234 (360)
T PRK12595 172 KILKQVADEYGLA----VISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGL 234 (360)
T ss_pred HHHHHHHHHcCCC----EEEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCC
Confidence 4677889999996 55554444455544556999966665444466777777 89999998885
No 197
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=77.83 E-value=7.4 Score=35.42 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccC-CHHHHHhhccccc-EEEeCCCCCCchH
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-AKEEHVRRGQLAD-VCLDTPLCNGHTT 144 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~-~~~~~~~~~~~aD-v~l~~~~~~~g~~ 144 (200)
..++.++.......|.+.+++--.+...-..=+....++... .||+++..- +. ..+++..| |+.-||..
T Consensus 166 ~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~-~r~~ll~edfnp---isll~~~dkvy~~ts~m----- 236 (671)
T COG3563 166 STFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQ-HRVHLLAEDFNP---ISLLQNVDKVYCVTSQM----- 236 (671)
T ss_pred hHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccC-ceEEEecccCCh---HHHHHhcceeEEeeccc-----
Confidence 468899998888999999998654321111122334444554 888887652 21 22455666 44666643
Q ss_pred HHHHHHcCCCeeecC
Q psy15362 145 SMDVLWTGTPVVTLP 159 (200)
Q Consensus 145 ~lEAma~G~PVV~~~ 159 (200)
=.||+.||+|+++..
T Consensus 237 gfeall~~~~~~~fg 251 (671)
T COG3563 237 GFEALLCGKPLTTFG 251 (671)
T ss_pred cHHHHhcCCceeeec
Confidence 379999999999863
No 198
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=77.77 E-value=31 Score=29.74 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=43.7
Q ss_pred HHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec-CCCcchhhhHHHHHhhcCCCccee-cCHHHHHHHHHHhhcCC
Q psy15362 122 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL-PGETLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 122 ~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~-~g~~~~~r~~~~~~~~~g~~~~ia-~~~~~yv~~a~~l~~d~ 199 (200)
|.+.++--|++++- +||+..-||...|+|.|++ +|.... ..-++...|+ +.. .|+.+-++.|++++.++
T Consensus 245 D~l~Llyya~lvig----~ggTMarEaAlLGtpaIs~~pGkll~---vdk~lie~G~--~~~s~~~~~~~~~a~~~l~~~ 315 (346)
T COG1817 245 DTLSLLYYATLVIG----AGGTMAREAALLGTPAISCYPGKLLA---VDKYLIEKGL--LYHSTDEIAIVEYAVRNLKYR 315 (346)
T ss_pred cHHHHHhhhheeec----CCchHHHHHHHhCCceEEecCCcccc---ccHHHHhcCc--eeecCCHHHHHHHHHHHhhch
Confidence 44445556777763 3578899999999999974 664211 0112333343 333 57778888888887665
No 199
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=77.12 E-value=14 Score=25.73 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=46.1
Q ss_pred cEEEEEcCCccc----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH--cCCCee
Q psy15362 83 SILWLLKFPAVG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVV 156 (200)
Q Consensus 83 ~~l~ivG~~~~~----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~PVV 156 (200)
.+++++++.|.. ...+++.+++.|++ -.|.-. +..++......+|+++.+.....-..-++..+ .|+||+
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~---~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~ 79 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAG---SYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVE 79 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEe---cHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEE
Confidence 456666655532 25678889999996 333333 33455556678899987754322233455544 477999
Q ss_pred ecCCC
Q psy15362 157 TLPGE 161 (200)
Q Consensus 157 ~~~g~ 161 (200)
..+..
T Consensus 80 ~I~~~ 84 (95)
T TIGR00853 80 VINGA 84 (95)
T ss_pred EeChh
Confidence 87654
No 200
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=77.05 E-value=30 Score=31.04 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCCCCcEEEeccC---CHHHHHhhccc---ccEE---EeCCCCCC-chHHHHHHHcCCCeeec-CCCcchh
Q psy15362 97 NIQATAQALGLDQHRILFSNVA---AKEEHVRRGQL---ADVC---LDTPLCNG-HTTSMDVLWTGTPVVTL-PGETLAS 165 (200)
Q Consensus 97 ~l~~~~~~~gl~~~rv~f~g~~---~~~~~~~~~~~---aDv~---l~~~~~~~-g~~~lEAma~G~PVV~~-~g~~~~~ 165 (200)
.+-.++.+.|+...+++=+|.. ...|+..++.. ..+. +.+...+. -+..++..+.++|||+. .|.+-.+
T Consensus 165 ~~~~~~~~~g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa~~a~~~KPVv~~k~Grs~~g 244 (447)
T TIGR02717 165 ALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAREISKKKPIVVLKSGTSEAG 244 (447)
T ss_pred HHHHHHHhcCCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHHHHHHcCCCCEEEEecCCChhh
Confidence 4556677777765777778853 45777776633 3333 33222111 13344445569999986 4543222
Q ss_pred h------h---------HHHHHhhcCCCcceecCHHHHHHHHHHhhc
Q psy15362 166 R------V---------AASQLATLGCPELIARTHKEYQDIAIRLGT 197 (200)
Q Consensus 166 r------~---------~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~ 197 (200)
+ . -.+.++..|+ +.+++.+++.+.+..|..
T Consensus 245 ~~aa~sHtgalag~~~~~~a~~~~~Gv--~~~~~~~el~~~~~~l~~ 289 (447)
T TIGR02717 245 AKAASSHTGALAGSDEAYDAAFKQAGV--IRADSIEELFDLARLLSN 289 (447)
T ss_pred hhhhhhccccccChHHHHHHHHHHCCe--EEeCCHHHHHHHHHHHhc
Confidence 1 1 1245566666 777999999998877764
No 201
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=76.89 E-value=22 Score=29.88 Aligned_cols=76 Identities=16% Similarity=0.062 Sum_probs=50.8
Q ss_pred HHHHHHCCC-cEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHc
Q psy15362 74 VNVLKAVPN-SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWT 151 (200)
Q Consensus 74 ~~i~~~~p~-~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~ 151 (200)
...+.+.++ +.++-+.+ ...++.++.++++|+. .-+.+.+++.. ....|+++.++|-.. .-.++.|+.+
T Consensus 20 ~~~~~~~~~~~~~vav~d--~~~~~a~~~a~~~~~~------~~~~~~~~ll~-~~~iD~V~Iatp~~~H~e~~~~AL~a 90 (342)
T COG0673 20 LPALAALGGGLELVAVVD--RDPERAEAFAEEFGIA------KAYTDLEELLA-DPDIDAVYIATPNALHAELALAALEA 90 (342)
T ss_pred HHHHHhCCCceEEEEEec--CCHHHHHHHHHHcCCC------cccCCHHHHhc-CCCCCEEEEcCCChhhHHHHHHHHhc
Confidence 334455666 46666654 4567889999999984 22444466553 223789977666443 4567999999
Q ss_pred CCCeeec
Q psy15362 152 GTPVVTL 158 (200)
Q Consensus 152 G~PVV~~ 158 (200)
|++|++-
T Consensus 91 GkhVl~E 97 (342)
T COG0673 91 GKHVLCE 97 (342)
T ss_pred CCEEEEc
Confidence 9999983
No 202
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=76.66 E-value=5 Score=30.95 Aligned_cols=58 Identities=16% Similarity=0.028 Sum_probs=34.8
Q ss_pred ccccEEE-eCCC----CCCch--HHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCcceecCHHHH
Q psy15362 128 QLADVCL-DTPL----CNGHT--TSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEY 188 (200)
Q Consensus 128 ~~aDv~l-~~~~----~~~g~--~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~y 188 (200)
..+|+++ +-|. .+.|+ .+.+|++.|+||++.....+...+-. -.-|+...+..+.+..
T Consensus 92 ~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l~~W~~---Fagg~a~~L~~d~~al 156 (159)
T PF10649_consen 92 EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNLEAWRA---FAGGLATELPPDREAL 156 (159)
T ss_pred cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHH---hcCCccccCCCCHHHH
Confidence 3488885 4452 23354 58999999999999766544333321 0225555666665544
No 203
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=76.48 E-value=11 Score=32.74 Aligned_cols=84 Identities=12% Similarity=-0.036 Sum_probs=51.0
Q ss_pred HHHHHHHHHCCCc-EEEEEcCCcccHHHHHHHHHHcCCCCCcEEE--eccCCHHHHHhhcccccEEEeCCCCCC-chHHH
Q psy15362 71 QMWVNVLKAVPNS-ILWLLKFPAVGEANIQATAQALGLDQHRILF--SNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSM 146 (200)
Q Consensus 71 ~a~~~i~~~~p~~-~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f--~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~l 146 (200)
....+.+.+.++. ++++.|. ..+.+++++++..- .++.+ +...+.+++..+++.+|+++++.+... ...+-
T Consensus 11 ~~~~~~L~~~~~~~~v~va~r---~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~~~v~~ 85 (386)
T PF03435_consen 11 SAIARLLARRGPFEEVTVADR---NPEKAERLAEKLLG--DRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFGEPVAR 85 (386)
T ss_dssp HHHHHHHHCTTCE-EEEEEES---SHHHHHHHHT--TT--TTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGHHHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEEC---CHHHHHHHHhhccc--cceeEEEEecCCHHHHHHHHhcCCEEEECCccchhHHHHH
Confidence 3445555556655 7777763 35677777765321 33433 444456778889999999999874324 34566
Q ss_pred HHHHcCCCeeecC
Q psy15362 147 DVLWTGTPVVTLP 159 (200)
Q Consensus 147 EAma~G~PVV~~~ 159 (200)
-|+.+|++.|-..
T Consensus 86 ~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 86 ACIEAGVHYVDTS 98 (386)
T ss_dssp HHHHHT-EEEESS
T ss_pred HHHHhCCCeeccc
Confidence 6788999999843
No 204
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=75.43 E-value=3.4 Score=30.09 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=23.4
Q ss_pred HHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeee-cCC
Q psy15362 121 EEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVT-LPG 160 (200)
Q Consensus 121 ~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~-~~g 160 (200)
+++..++..+|+.+|-+.-.. --.+-.++.+|+|+|+ +.|
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCC
Confidence 355566677999998652122 2346667789999997 444
No 205
>TIGR03586 PseI pseudaminic acid synthase.
Probab=75.33 E-value=29 Score=29.89 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccc-ccEEEeCCCCCCchHHHHHHH-cCCCeeecCCCcchhhh--HH
Q psy15362 94 GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETLASRV--AA 169 (200)
Q Consensus 94 ~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~-aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~~~~~r~--~~ 169 (200)
+..+|.+.++++|+. ++.-..+.+.+.-+.+. +|++=..|..-.-..++|+++ .|+|||.+.|-.-.+.+ ..
T Consensus 78 ~~~~L~~~~~~~Gi~----~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av 153 (327)
T TIGR03586 78 WHKELFERAKELGLT----IFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAV 153 (327)
T ss_pred HHHHHHHHHHHhCCc----EEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHH
Confidence 345688889999997 45444443333322233 677755555444567888887 89999988775433322 23
Q ss_pred HHHhhcCCCcc
Q psy15362 170 SQLATLGCPEL 180 (200)
Q Consensus 170 ~~~~~~g~~~~ 180 (200)
..+...|.+++
T Consensus 154 ~~i~~~g~~~i 164 (327)
T TIGR03586 154 EACREAGCKDL 164 (327)
T ss_pred HHHHHCCCCcE
Confidence 44555566543
No 206
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=74.87 E-value=24 Score=29.50 Aligned_cols=107 Identities=10% Similarity=0.058 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcC----------Ccc---cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEE
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKF----------PAV---GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC 133 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~----------~~~---~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~ 133 (200)
+.+++...++.+. +.+++..|. .+. +...+++.++++|+. +++-..+..+...+...+|++
T Consensus 41 ~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~----~~te~~d~~~~~~l~~~vd~~ 114 (266)
T PRK13398 41 EQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLP----VVTEVMDTRDVEEVADYADML 114 (266)
T ss_pred HHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCC----EEEeeCChhhHHHHHHhCCEE
Confidence 4456665555553 355666651 011 134677888999996 555544434444334558888
Q ss_pred EeCCCCCCchHHHHHHH-cCCCeeecCCCc-chhh--hHHHHHhhcCCCc
Q psy15362 134 LDTPLCNGHTTSMDVLW-TGTPVVTLPGET-LASR--VAASQLATLGCPE 179 (200)
Q Consensus 134 l~~~~~~~g~~~lEAma-~G~PVV~~~g~~-~~~r--~~~~~~~~~g~~~ 179 (200)
--++..-.-..++++++ .|+||+...|.. -.+. .....+...|.++
T Consensus 115 kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~ 164 (266)
T PRK13398 115 QIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNEN 164 (266)
T ss_pred EECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 66665444455666665 899999988854 2221 2234455567665
No 207
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=74.40 E-value=33 Score=25.56 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCc--c--cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPA--V--GEANIQATAQALGLDQHRILFSNVAAKEEHVRRG 127 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~--~--~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~ 127 (200)
+-+...++.++...-..+++|+.. + +.+..++.++++|++ + +|-+-.+.+++..++
T Consensus 69 ~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~--~-vF~pgt~~~~iv~~l 128 (134)
T TIGR01501 69 CKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFD--R-VFAPGTPPEVVIADL 128 (134)
T ss_pred HHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCC--E-EECcCCCHHHHHHHH
Confidence 333334444554433456777531 1 223355678889984 4 455555667776654
No 208
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=73.71 E-value=15 Score=25.52 Aligned_cols=64 Identities=20% Similarity=0.126 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHH--HHHcCCCeeecCCCcc
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMD--VLWTGTPVVTLPGETL 163 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lE--Ama~G~PVV~~~g~~~ 163 (200)
..+++.++++|++ -.|.-.+. .++...+...|+++.+.....-..-++ +.-.++||...+...+
T Consensus 17 ~ki~~~~~~~~~~-~~v~~~~~---~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y 82 (96)
T cd05564 17 KKMKKAAEKRGID-AEIEAVPE---SELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDY 82 (96)
T ss_pred HHHHHHHHHCCCc-eEEEEecH---HHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhc
Confidence 5778899999996 44444433 455556678999987654332233344 3347899998765543
No 209
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=73.13 E-value=47 Score=27.56 Aligned_cols=57 Identities=7% Similarity=0.079 Sum_probs=32.9
Q ss_pred CCCEEEEEeCCC-----CCCCHHHHHHHHHHHHHC-CCcEEEEEcCCcccHHHHHHHHHHcCC
Q psy15362 51 EDAIVYCNFNQL-----YKIDPSTLQMWVNVLKAV-PNSILWLLKFPAVGEANIQATAQALGL 107 (200)
Q Consensus 51 ~~~~v~~~~~r~-----~K~~~~~l~a~~~i~~~~-p~~~l~ivG~~~~~~~~l~~~~~~~gl 107 (200)
...++|+-.... .|-.+.+..|+.-+.+-. .+.++++||.....++-+++.++..|.
T Consensus 27 m~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r~g~ 89 (252)
T COG0052 27 MKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAERTGA 89 (252)
T ss_pred ccccceeecCCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHhCC
Confidence 345676655332 344445555554444332 257888888754455677778877774
No 210
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=72.59 E-value=25 Score=26.03 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=25.7
Q ss_pred HHHHHHH-HHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhh
Q psy15362 69 TLQMWVN-VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRR 126 (200)
Q Consensus 69 ~l~a~~~-i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~ 126 (200)
.+..+.+ +.++.++-..+++|+. ...+. .+..+++|+ ++++..|. +..++...
T Consensus 69 ~~~~~~~~L~~~g~~~i~vivGG~-~~~~~-~~~l~~~Gv--d~~~~~gt-~~~~i~~~ 122 (132)
T TIGR00640 69 LVPALRKELDKLGRPDILVVVGGV-IPPQD-FDELKEMGV--AEIFGPGT-PIPESAIF 122 (132)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCC-CChHh-HHHHHHCCC--CEEECCCC-CHHHHHHH
Confidence 3343333 4443443344566642 22233 344677898 56665555 44444443
No 211
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.47 E-value=20 Score=28.64 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcc-cccEE-EeCCCCCCchHHHHHHH---cCCCeeecCC
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ-LADVC-LDTPLCNGHTTSMDVLW---TGTPVVTLPG 160 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~-~aDv~-l~~~~~~~g~~~lEAma---~G~PVV~~~g 160 (200)
+.+-+.++++|+. .+-|-....|+...++ .+|++ +.|...-||...+-++. -++|.+.+.|
T Consensus 87 ~~vi~~a~~~~i~----~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~~~l~ptGG 152 (201)
T PRK06015 87 QELLAAANDSDVP----LLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTFFCPTGG 152 (201)
T ss_pred HHHHHHHHHcCCC----EeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCCCcEEecCC
Confidence 3444455555553 5555555444444332 35555 44432223344444443 3444444433
No 212
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=72.03 E-value=6.4 Score=29.03 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=48.7
Q ss_pred CCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc
Q psy15362 48 GLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG 127 (200)
Q Consensus 48 ~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~ 127 (200)
++....+++.+.|. .-++...-+....-.++.++.. ..++.++++++++- ..+.+..+ +++...+
T Consensus 9 ~l~~~~vlviGaGg-------~ar~v~~~L~~~g~~~i~i~nR---t~~ra~~l~~~~~~--~~~~~~~~---~~~~~~~ 73 (135)
T PF01488_consen 9 DLKGKRVLVIGAGG-------AARAVAAALAALGAKEITIVNR---TPERAEALAEEFGG--VNIEAIPL---EDLEEAL 73 (135)
T ss_dssp TGTTSEEEEESSSH-------HHHHHHHHHHHTTSSEEEEEES---SHHHHHHHHHHHTG--CSEEEEEG---GGHCHHH
T ss_pred CcCCCEEEEECCHH-------HHHHHHHHHHHcCCCEEEEEEC---CHHHHHHHHHHcCc--cccceeeH---HHHHHHH
Confidence 35555555555442 2333333333332234666653 35667777777622 34555554 3555567
Q ss_pred ccccEEEeCCCCCCchHHHHHHHcCC
Q psy15362 128 QLADVCLDTPLCNGHTTSMDVLWTGT 153 (200)
Q Consensus 128 ~~aDv~l~~~~~~~g~~~lEAma~G~ 153 (200)
..+|+++.+.+.+.....-|.+..+.
T Consensus 74 ~~~DivI~aT~~~~~~i~~~~~~~~~ 99 (135)
T PF01488_consen 74 QEADIVINATPSGMPIITEEMLKKAS 99 (135)
T ss_dssp HTESEEEE-SSTTSTSSTHHHHTTTC
T ss_pred hhCCeEEEecCCCCcccCHHHHHHHH
Confidence 89999998876544444445555554
No 213
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=71.33 E-value=16 Score=28.32 Aligned_cols=70 Identities=10% Similarity=0.019 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHC----CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCC
Q psy15362 66 DPSTLQMWVNVLKAV----PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC 139 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~----p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~ 139 (200)
++-+-.+..++.++. .+.+.+++|.+......+.+.+.+.|. +|.+..+.. +++...++.||+++.+...
T Consensus 24 ~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~---~V~v~~r~~-~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 24 IPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVCHSKT-KNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred cCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC---EEEEEECCc-hhHHHHHhhCCEEEEcCCC
Confidence 444555555555544 568999999742212335555555565 377777653 5677788999999977543
No 214
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=69.28 E-value=36 Score=23.77 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=50.1
Q ss_pred HHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcC
Q psy15362 74 VNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTG 152 (200)
Q Consensus 74 ~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G 152 (200)
..+.+..|+..++-+-+ +..++.++..+++|+. .| .+.+++..- ...|+.+.+.+... ...+.+++..|
T Consensus 17 ~~~~~~~~~~~v~~v~d--~~~~~~~~~~~~~~~~----~~---~~~~~ll~~-~~~D~V~I~tp~~~h~~~~~~~l~~g 86 (120)
T PF01408_consen 17 RALLRSSPDFEVVAVCD--PDPERAEAFAEKYGIP----VY---TDLEELLAD-EDVDAVIIATPPSSHAEIAKKALEAG 86 (120)
T ss_dssp HHHHHTTTTEEEEEEEC--SSHHHHHHHHHHTTSE----EE---SSHHHHHHH-TTESEEEEESSGGGHHHHHHHHHHTT
T ss_pred HHHHhcCCCcEEEEEEe--CCHHHHHHHHHHhccc----ch---hHHHHHHHh-hcCCEEEEecCCcchHHHHHHHHHcC
Confidence 34455568888876654 3456777888888873 33 334555531 26898876655443 56799999999
Q ss_pred CCeeec
Q psy15362 153 TPVVTL 158 (200)
Q Consensus 153 ~PVV~~ 158 (200)
++|++-
T Consensus 87 ~~v~~E 92 (120)
T PF01408_consen 87 KHVLVE 92 (120)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 999984
No 215
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=69.21 E-value=37 Score=29.65 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcC----------Cccc---HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEE
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKF----------PAVG---EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC 133 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~----------~~~~---~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~ 133 (200)
+.+++....+.+. .++++..|. .|.+ .+.|++..++.|+. +++-..+.+++..+...+|++
T Consensus 115 eq~l~~A~~lk~~--g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~----~~tev~d~~~v~~~~~~~d~l 188 (352)
T PRK13396 115 EMIVETAKRVKAA--GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLG----IITEVMDAADLEKIAEVADVI 188 (352)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCc----EEEeeCCHHHHHHHHhhCCeE
Confidence 4566666665543 567766442 0111 23566677788996 556655555555445568999
Q ss_pred EeCCCCCCchHHHHHHH-cCCCeeecCCCc
Q psy15362 134 LDTPLCNGHTTSMDVLW-TGTPVVTLPGET 162 (200)
Q Consensus 134 l~~~~~~~g~~~lEAma-~G~PVV~~~g~~ 162 (200)
=-++..-.-..++++.+ .|+||+...|-.
T Consensus 189 qIga~~~~n~~LL~~va~t~kPVllk~G~~ 218 (352)
T PRK13396 189 QVGARNMQNFSLLKKVGAQDKPVLLKRGMA 218 (352)
T ss_pred EECcccccCHHHHHHHHccCCeEEEeCCCC
Confidence 76665444566788776 899999988865
No 216
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=68.91 E-value=3.7 Score=26.04 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.5
Q ss_pred hHHHHHHHcCCCeeecCCCcc
Q psy15362 143 TTSMDVLWTGTPVVTLPGETL 163 (200)
Q Consensus 143 ~~~lEAma~G~PVV~~~g~~~ 163 (200)
..+.|++-+|.||++.-|..|
T Consensus 15 ~kI~esav~G~pVvALCGk~w 35 (58)
T PF11238_consen 15 DKIAESAVMGTPVVALCGKVW 35 (58)
T ss_pred hHHHHHHhcCceeEeeeCcee
Confidence 458999999999999998765
No 217
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=68.53 E-value=57 Score=28.45 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=54.3
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcc--
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ-- 128 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~-- 128 (200)
.+..++....+... ...+......+.++.|+.++++.-......+..++ ..+-. ..+++++.-....+..+++
T Consensus 49 ~~~~iW~Ha~s~Ge-~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~---~~~~~-~~~~~~P~d~~~~~~~~l~~~ 123 (425)
T PRK05749 49 KGPLIWFHAVSVGE-TRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQA---LFGDD-VEHRYLPYDLPGAVRRFLRFW 123 (425)
T ss_pred CCCeEEEEeCCHHH-HHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHH---hcCCC-ceEEEecCCcHHHHHHHHHhh
Confidence 34556555554431 22344555566778899988776432222232322 11211 2244555432334444443
Q ss_pred cccEEEeCCCCCCchHHHHHHHcCCCeeecCC
Q psy15362 129 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 160 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g 160 (200)
.-|+++....+-.++.+..+-..|+|+|...+
T Consensus 124 ~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 124 RPKLVIIMETELWPNLIAELKRRGIPLVLANA 155 (425)
T ss_pred CCCEEEEEecchhHHHHHHHHHCCCCEEEEec
Confidence 35887644222234556677788999997654
No 218
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=68.36 E-value=19 Score=29.62 Aligned_cols=89 Identities=16% Similarity=0.036 Sum_probs=57.0
Q ss_pred HHHHHHHHHHCCCcEEEEEcCCc----ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhh------cccccEEEeCCCC
Q psy15362 70 LQMWVNVLKAVPNSILWLLKFPA----VGEANIQATAQALGLDQHRILFSNVAAKEEHVRR------GQLADVCLDTPLC 139 (200)
Q Consensus 70 l~a~~~i~~~~p~~~l~ivG~~~----~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~------~~~aDv~l~~~~~ 139 (200)
+++..++.++.+..++++-|+.+ .+-+.+++.+-++|+.+++|+ +.......+-.+ +..-.+.|-|+.|
T Consensus 70 l~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii-~e~~s~nT~en~~~a~~i~~~~~~iIVTq~f 148 (239)
T PRK10834 70 IQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIV-LDYAGFRTLDSIVRTRKVFDTNDFIIITQRF 148 (239)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEE-ecCCCCCHHHHHHHHHHHhCCCCEEEECCHH
Confidence 45556677888888888888522 223568888999999845544 444433222222 3333466777766
Q ss_pred CCchHHHHHHHcCCCeeecC
Q psy15362 140 NGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 140 ~~g~~~lEAma~G~PVV~~~ 159 (200)
.-.-++.-|-..|..+++..
T Consensus 149 Hm~RA~~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 149 HCERALFIALHMGIQAQCYA 168 (239)
T ss_pred HHHHHHHHHHHcCCceEEEe
Confidence 55567777888999987753
No 219
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=68.23 E-value=20 Score=24.90 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCcc---cH----------HHHHHHHHHcCCCCCcEEEeccC
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPAV---GE----------ANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~~---~~----------~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
...++.+++++++.|+..+.|.|.... .. ..+++++.+.|+.++|+...|+-
T Consensus 16 ~~~L~~~a~~l~~~~~~~i~I~Ghtd~~g~~~~N~~LS~~RA~~V~~~L~~~gi~~~ri~~~g~G 80 (104)
T TIGR02802 16 QAILDAHAAYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQAKGVSASQIETVSYG 80 (104)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEeec
Confidence 346677788889999999999996321 11 13445666789988888888764
No 220
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=66.83 E-value=28 Score=30.06 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccc-ccEEEeCCCCCCchHHHHHHH-cCCCeeecCCCcchhhh--H
Q psy15362 93 VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETLASRV--A 168 (200)
Q Consensus 93 ~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~-aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~~~~~r~--~ 168 (200)
.+...|.+.++++|+. .|.-..+.+.+.-+.+. +|++=-+|..-.-..+++++| .|+|||.+.|-.-.+.+ .
T Consensus 76 e~~~~L~~~~~~~Gi~----~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~A 151 (329)
T TIGR03569 76 EDHRELKEYCESKGIE----FLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAA 151 (329)
T ss_pred HHHHHHHHHHHHhCCc----EEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHH
Confidence 3457788999999997 55555544433323233 677744444334467888877 89999998775433322 3
Q ss_pred HHHHhhcCCC
Q psy15362 169 ASQLATLGCP 178 (200)
Q Consensus 169 ~~~~~~~g~~ 178 (200)
...++..|.+
T Consensus 152 v~~i~~~G~~ 161 (329)
T TIGR03569 152 VGVLRDAGTP 161 (329)
T ss_pred HHHHHHcCCC
Confidence 3455566665
No 221
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=66.38 E-value=41 Score=28.11 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHCCC----cEEEEEcCC-cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC
Q psy15362 67 PSTLQMWVNVLKAVPN----SILWLLKFP-AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG 141 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~----~~l~ivG~~-~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~ 141 (200)
..|+..+.++.++.|. .+..+|-.. .+..++.-+..++.|+.-|-..|+|-++...++..+ ..|||.|-.
T Consensus 167 ~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFLgG~~K~~vL~~~-~phIFFDDQ---- 241 (264)
T PF06189_consen 167 KDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFLGGLPKGPVLKAF-RPHIFFDDQ---- 241 (264)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHhCCCchhHHHHhh-CCCEeecCc----
Confidence 4688889999888653 566666532 355677777888889988899999999988888766 589998743
Q ss_pred chHHHHHHHcCCCeee
Q psy15362 142 HTTSMDVLWTGTPVVT 157 (200)
Q Consensus 142 g~~~lEAma~G~PVV~ 157 (200)
..=+|+-+.++|.+-
T Consensus 242 -~~H~~~a~~~vps~h 256 (264)
T PF06189_consen 242 -DGHLESASKVVPSGH 256 (264)
T ss_pred -hhhhhHhhcCCCEEe
Confidence 456778888888764
No 222
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.75 E-value=34 Score=27.55 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHCCC
Q psy15362 67 PSTLQMWVNVLKAVPN 82 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~ 82 (200)
+.-++++.++.+++|+
T Consensus 51 ~~~~~~I~~l~~~~p~ 66 (212)
T PRK05718 51 PAALEAIRLIAKEVPE 66 (212)
T ss_pred ccHHHHHHHHHHHCCC
Confidence 3456667777777775
No 223
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=64.81 E-value=16 Score=27.96 Aligned_cols=65 Identities=23% Similarity=0.133 Sum_probs=37.5
Q ss_pred hcccccEEEeCCCCCCc--hHHHHHHHcCCCeeecCCCcch-hhhHHHHHhhcCC-Cc--ceecCHHHHHHHH
Q psy15362 126 RGQLADVCLDTPLCNGH--TTSMDVLWTGTPVVTLPGETLA-SRVAASQLATLGC-PE--LIARTHKEYQDIA 192 (200)
Q Consensus 126 ~~~~aDv~l~~~~~~~g--~~~lEAma~G~PVV~~~g~~~~-~r~~~~~~~~~g~-~~--~ia~~~~~yv~~a 192 (200)
+...+|.|+.- |=+.| ..+.||+..++||+..+++.+- ..... ++..-+. ++ .++++.++.++.+
T Consensus 88 m~~~sda~Ivl-pGG~GTL~E~~~a~~~~kpv~~l~~~g~~~~~l~~-~~~~~~~~~~~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 88 LVRSADVVVSV-GGGYGTAIEILGAYALGGPVVVLRGTGGWTDRLSQ-VLIEGVYLDERVIVEITPAEAVKLA 158 (159)
T ss_pred HHHHCCEEEEc-CCchhHHHHHHHHHHcCCCEEEEECCCcchHHHHH-HHhccccccceeEecCCHHHHHHhh
Confidence 35678988653 21224 3599999999999988776432 22221 1111111 12 3457888777655
No 224
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=64.42 E-value=13 Score=31.82 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=50.7
Q ss_pred CcEEEEEcCCc-cc----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCC-CCCCchHHHHHHHcCCCe
Q psy15362 82 NSILWLLKFPA-VG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPV 155 (200)
Q Consensus 82 ~~~l~ivG~~~-~~----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~-~~~~g~~~lEAma~G~PV 155 (200)
+..=+++|.-+ .. .+++++++++.|.. ..++.+|.++.+.+..+ ..|+|+.++ |. +++.+.-..-+||
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk-~y~i~~~~in~~kL~nf--~iD~fV~~aCPr---~sidd~~~f~kPv 286 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEELGKE-ALLILLDNISPDQLRNL--DFDAYVNTACPR---IAIDDYARFKKPV 286 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHHcCCe-EEEEEeCCCCHHHHhcC--CcCEEEEccCCC---cccccHhhCCCcc
Confidence 44556677522 11 35788899999997 88889999998777654 499998664 42 4566667778898
Q ss_pred eec
Q psy15362 156 VTL 158 (200)
Q Consensus 156 V~~ 158 (200)
||.
T Consensus 287 lTP 289 (308)
T TIGR03682 287 LTP 289 (308)
T ss_pred cCH
Confidence 884
No 225
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=64.31 E-value=59 Score=28.15 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH-cCCCeeecCCCcc-hhh--hHHHH
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETL-ASR--VAASQ 171 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~~~-~~r--~~~~~ 171 (200)
..|++.+++.|+. +++-..+.+++..+...+|++--++..-.-..++++.+ .|+||+...|-.. .+. ..+..
T Consensus 147 ~~L~~~~~~~Gl~----v~tev~d~~~~~~l~~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~ 222 (335)
T PRK08673 147 KLLAEAREETGLP----IVTEVMDPRDVELVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEY 222 (335)
T ss_pred HHHHHHHHHcCCc----EEEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 4567778899996 55655555555544566898866665444455666655 8999999888542 221 22334
Q ss_pred HhhcCCCc
Q psy15362 172 LATLGCPE 179 (200)
Q Consensus 172 ~~~~g~~~ 179 (200)
+...|.+.
T Consensus 223 i~~~GN~~ 230 (335)
T PRK08673 223 ILAEGNPN 230 (335)
T ss_pred HHHcCCCe
Confidence 44556654
No 226
>KOG0832|consensus
Probab=64.24 E-value=32 Score=28.25 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=23.0
Q ss_pred cEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 131 DVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 131 Dv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
|++|.-.+.+.-.+++||.-+++|+|+.-
T Consensus 175 D~vvvln~~e~~sAilEA~K~~IPTIgIV 203 (251)
T KOG0832|consen 175 DLVVVLNPEENHSAILEAAKMAIPTIGIV 203 (251)
T ss_pred ceeEecCcccccHHHHHHHHhCCCeEEEe
Confidence 66655456667789999999999999853
No 227
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=63.85 E-value=48 Score=28.71 Aligned_cols=92 Identities=13% Similarity=0.032 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHH------CCCcEEEEEcCCcc---cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEe
Q psy15362 65 IDPSTLQMWVNVLKA------VPNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 135 (200)
Q Consensus 65 ~~~~~l~a~~~i~~~------~p~~~l~ivG~~~~---~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~ 135 (200)
+....++++.+-+.. ...-.+-++|.... +..+++++++..|+. -+.+|.+..+.+++.. +..|.+.+.
T Consensus 129 G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~-v~~~~~~~~s~~~i~~-~~~A~~nlv 206 (399)
T cd00316 129 GYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIR-VNALFDGGTTVEELRE-LGNAKLNLV 206 (399)
T ss_pred HHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCc-EEEEcCCCCCHHHHHh-hccCcEEEE
Confidence 344555555543322 11335677775332 457899999999997 5556665567788876 456666665
Q ss_pred CCCCCCchHHHHHHH--cCCCeeecC
Q psy15362 136 TPLCNGHTTSMDVLW--TGTPVVTLP 159 (200)
Q Consensus 136 ~~~~~~g~~~lEAma--~G~PVV~~~ 159 (200)
.+++ .|..+.|.|. .|+|.+...
T Consensus 207 ~~~~-~g~~~a~~l~~~~g~p~~~~~ 231 (399)
T cd00316 207 LCRE-SGLYLARYLEEKYGIPYILIN 231 (399)
T ss_pred ecHh-HHHHHHHHHHHHhCCCeEEeC
Confidence 5552 3444555553 899999754
No 228
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=63.80 E-value=74 Score=26.14 Aligned_cols=37 Identities=22% Similarity=0.030 Sum_probs=26.2
Q ss_pred HHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeec
Q psy15362 122 EHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 122 ~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~ 158 (200)
++..++..+|+.++.++-.. --.+..|+..|+|||..
T Consensus 53 dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 53 DLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred CHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEE
Confidence 44444557999997654333 45688899999999974
No 229
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=63.45 E-value=26 Score=30.28 Aligned_cols=50 Identities=16% Similarity=0.022 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc
Q psy15362 64 KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV 117 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~ 117 (200)
......+++..+.+++.|+++++++|+ ++.+++.++++++..+++.+...
T Consensus 13 ~~p~~vl~aa~~a~~~~~~~~~iLvG~----~~~I~~~l~~~~~~~~~~~Iv~~ 62 (334)
T PRK05331 13 FGPEVVVPGALQALKEHPDLEIILVGD----EEKIKPLLAKKPDLKERIEIVHA 62 (334)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEEEeC----HHHHHHHHHhcCCCcCCcEEEeC
Confidence 456678899888888888899999985 36788888888876567777653
No 230
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=63.40 E-value=59 Score=28.19 Aligned_cols=70 Identities=23% Similarity=0.218 Sum_probs=45.6
Q ss_pred HHHCC-CcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEE--EeCC--C-CCCchHHHHHHH
Q psy15362 77 LKAVP-NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC--LDTP--L-CNGHTTSMDVLW 150 (200)
Q Consensus 77 ~~~~p-~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~--l~~~--~-~~~g~~~lEAma 150 (200)
+.+.| ++.++-+.+ ...++.+++++++|+. . +.+.+++. ...|+. ..+. | ....-...+||.
T Consensus 21 l~~~~~~~eLvaV~d--~~~erA~~~A~~~gi~----~---y~~~eell---~d~Di~~V~ipt~~P~~~H~e~a~~aL~ 88 (343)
T TIGR01761 21 FAAAPERFELAGILA--QGSERSRALAHRLGVP----L---YCEVEELP---DDIDIACVVVRSAIVGGQGSALARALLA 88 (343)
T ss_pred HHhCCCCcEEEEEEc--CCHHHHHHHHHHhCCC----c---cCCHHHHh---cCCCEEEEEeCCCCCCccHHHHHHHHHh
Confidence 34456 788888775 3467788899998873 2 34456665 444444 3322 2 122456899999
Q ss_pred cCCCeeec
Q psy15362 151 TGTPVVTL 158 (200)
Q Consensus 151 ~G~PVV~~ 158 (200)
+|+.|++-
T Consensus 89 aGkHVL~E 96 (343)
T TIGR01761 89 RGIHVLQE 96 (343)
T ss_pred CCCeEEEc
Confidence 99999983
No 231
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=63.24 E-value=47 Score=27.94 Aligned_cols=107 Identities=20% Similarity=0.233 Sum_probs=59.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCC---------------HHHHHhhcccccEEEeCCCCCC-chHH
Q psy15362 82 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---------------KEEHVRRGQLADVCLDTPLCNG-HTTS 145 (200)
Q Consensus 82 ~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~---------------~~~~~~~~~~aDv~l~~~~~~~-g~~~ 145 (200)
+.+++++|.|.- -..+-+.++.+|. +|++..+.+ .+++..+++.+|+++.+.|..- ....
T Consensus 151 gk~v~IiG~G~i-G~avA~~L~~~G~---~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~ 226 (287)
T TIGR02853 151 GSNVMVLGFGRT-GMTIARTFSALGA---RVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADV 226 (287)
T ss_pred CCEEEEEcChHH-HHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHH
Confidence 578999997533 3445555566664 366655433 1244556788999998877542 3345
Q ss_pred HHHHHcCCCeee---cCCCc-c--hhhhHHHHHhhcCCCccee-cCHHHHHHHH
Q psy15362 146 MDVLWTGTPVVT---LPGET-L--ASRVAASQLATLGCPELIA-RTHKEYQDIA 192 (200)
Q Consensus 146 lEAma~G~PVV~---~~g~~-~--~~r~~~~~~~~~g~~~~ia-~~~~~yv~~a 192 (200)
++.|..+.=+|= .+|.. + +.+.|...+...|+|..++ .+...+.+..
T Consensus 227 l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~~~ 280 (287)
T TIGR02853 227 LSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILANV 280 (287)
T ss_pred HhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHHHH
Confidence 666655543441 13332 2 1222322233457888775 4555555443
No 232
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=63.18 E-value=17 Score=26.97 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcCCc-----ccHHHHHHHHHHcCCCCCcEEEeccCC--HHHHH---hhccc---c
Q psy15362 64 KIDPSTLQMWVNVLKAVPNSILWLLKFPA-----VGEANIQATAQALGLDQHRILFSNVAA--KEEHV---RRGQL---A 130 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~p~~~l~ivG~~~-----~~~~~l~~~~~~~gl~~~rv~f~g~~~--~~~~~---~~~~~---a 130 (200)
.....=++...++.++.+..++++.|+.+ ...+.+++.+.++|+..++|++-+.-. .++.. .++.. -
T Consensus 20 ~~~~~R~~~a~~L~~~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~ 99 (155)
T PF02698_consen 20 PESRERLDEAARLYKAGYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKERGWQ 99 (155)
T ss_dssp -S-HHHHHHHHHHHH-HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-SSS
T ss_pred HhHHHHHHHHHHHHhcCCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhhcCC
Confidence 33444456666677777888899988422 234677888888899867777755532 22222 22222 3
Q ss_pred cEEEeCCCCCCchHHHHHHHcCCCee
Q psy15362 131 DVCLDTPLCNGHTTSMDVLWTGTPVV 156 (200)
Q Consensus 131 Dv~l~~~~~~~g~~~lEAma~G~PVV 156 (200)
.++|.|+++...-+.+-+-.+|.+..
T Consensus 100 ~iilVT~~~H~~Ra~~~~~~~~~~~~ 125 (155)
T PF02698_consen 100 SIILVTSPYHMRRARMIFRKVGPDAV 125 (155)
T ss_dssp -EEEE--CCCHHHHHHHHHHHH--BT
T ss_pred eEEEECCHHHHHHHHHHHHHhCCCCe
Confidence 77887877765444444444444443
No 233
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=62.98 E-value=86 Score=27.03 Aligned_cols=78 Identities=15% Similarity=0.004 Sum_probs=45.7
Q ss_pred HHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCC-------------CcEEEeccCCHHHHHhhcccccEEEeCCCCCCc-
Q psy15362 77 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQ-------------HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGH- 142 (200)
Q Consensus 77 ~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~-------------~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g- 142 (200)
+...|+..++-+.+. ..+....+++.+|... ..+.+.+. ...++..+|+.++.++-...
T Consensus 20 l~~~~d~eLvav~d~--~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~-----~~el~~~vDVVIdaT~~~~~~ 92 (341)
T PRK04207 20 VAAQPDMELVGVAKT--KPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGT-----IEDLLEKADIVVDATPGGVGA 92 (341)
T ss_pred HhcCCCcEEEEEECC--ChHHHHHHHHhcCCCccccCccccccccCCceEEcCC-----hhHhhccCCEEEECCCchhhH
Confidence 344689988887653 2344555566555320 11222222 22334679999997754433
Q ss_pred hHHHHHHHcCCCeeecCCC
Q psy15362 143 TTSMDVLWTGTPVVTLPGE 161 (200)
Q Consensus 143 ~~~lEAma~G~PVV~~~g~ 161 (200)
-..-.+..+|++||...+.
T Consensus 93 e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 93 KNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred HHHHHHHHCCCEEEEcCCC
Confidence 3455677789999987653
No 234
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=62.49 E-value=36 Score=28.18 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=24.9
Q ss_pred ccccEEEeCCCCCC-chHHHHHHHcCCCeee-cCC
Q psy15362 128 QLADVCLDTPLCNG-HTTSMDVLWTGTPVVT-LPG 160 (200)
Q Consensus 128 ~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~-~~g 160 (200)
..+|+.++.++-.. --.+..|+.+|+|||+ +.|
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 46899998765333 3568899999999996 455
No 235
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=62.13 E-value=49 Score=22.80 Aligned_cols=51 Identities=12% Similarity=-0.015 Sum_probs=34.0
Q ss_pred EEEEEcCCccc-----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCC
Q psy15362 84 ILWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL 138 (200)
Q Consensus 84 ~l~ivG~~~~~-----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~ 138 (200)
+.+++++.|.. ...+++.++++|++ +.+.. .+..++......+|+++.+.+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~---~~v~~-~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP---VELIQ-CRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe---EEEEE-ecHHHHhhhcCCCCEEEECCc
Confidence 45566654532 35678889999996 44444 454566666678899988765
No 236
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=61.71 E-value=86 Score=28.04 Aligned_cols=19 Identities=32% Similarity=0.268 Sum_probs=14.9
Q ss_pred CHHHHHhhcccccEEEeCC
Q psy15362 119 AKEEHVRRGQLADVCLDTP 137 (200)
Q Consensus 119 ~~~~~~~~~~~aDv~l~~~ 137 (200)
+.+++..++..+|+++.+.
T Consensus 228 ~l~el~~~l~~~DvVissT 246 (414)
T COG0373 228 ALEELLEALAEADVVISST 246 (414)
T ss_pred cHHHHHHhhhhCCEEEEec
Confidence 3467788899999998764
No 237
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=60.67 E-value=81 Score=24.80 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=46.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEe-ccCCH-HHHH----------------------hhcccccEEEeCC
Q psy15362 82 NSILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAK-EEHV----------------------RRGQLADVCLDTP 137 (200)
Q Consensus 82 ~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~-g~~~~-~~~~----------------------~~~~~aDv~l~~~ 137 (200)
+-+++++|........+++.++..+-..-.=.|+ |...+ .... .....=|+++..-
T Consensus 56 ~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~ 135 (193)
T cd01425 56 GGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLD 135 (193)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeC
Confidence 5788899875334455666666544321001233 33333 3331 1334567776555
Q ss_pred CCCCchHHHHHHHcCCCeeecC
Q psy15362 138 LCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 138 ~~~~g~~~lEAma~G~PVV~~~ 159 (200)
+......+.||..+|+|+|+..
T Consensus 136 ~~~~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 136 PRKEHQAIREASKLGIPVIAIV 157 (193)
T ss_pred CccchHHHHHHHHcCCCEEEEe
Confidence 5555688999999999999864
No 238
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=60.65 E-value=1e+02 Score=27.96 Aligned_cols=72 Identities=8% Similarity=-0.032 Sum_probs=47.5
Q ss_pred EEEEEcCCc-ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecC
Q psy15362 84 ILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 84 ~l~ivG~~~-~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~ 159 (200)
.+.++|+-+ .....++++.+++|+. - +.|+.....+++..+- .+.+.+..+||.+ ....||- .+|+|.+..+
T Consensus 195 ~vnl~G~~~~~~~~~i~~lL~~lGI~-v-~~~lp~~~~~eL~~~~-~~~~~c~~~P~ls~aa~~Le~-~~gvp~~~~P 268 (457)
T CHL00073 195 PLVLFGSLPSTVASQLTLELKRQGIK-V-SGWLPSQRYTDLPSLG-EGVYVCGVNPFLSRTATTLMR-RRKCKLIGAP 268 (457)
T ss_pred cEEEEEecCcccHHHHHHHHHHcCCe-E-eEEeCCCCHHHHHhhC-cccEEEEcCcchHHHHHHHHH-HhCCceeecC
Confidence 478888622 2357899999999996 2 3555565678888644 5556666677765 2334433 5699988764
No 239
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=60.06 E-value=16 Score=29.07 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCc-ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHH
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTS 145 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~-~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~ 145 (200)
+..++++.++.+++|+. ++|-+. ...+..++.+ +.|-+ +++.+..+ .++..+.+..++...|--. .++-+
T Consensus 44 ~~a~~~I~~l~~~~p~~---~vGAGTV~~~e~a~~a~-~aGA~---FivSP~~~-~~v~~~~~~~~i~~iPG~~-TptEi 114 (196)
T PF01081_consen 44 PNALEAIEALRKEFPDL---LVGAGTVLTAEQAEAAI-AAGAQ---FIVSPGFD-PEVIEYAREYGIPYIPGVM-TPTEI 114 (196)
T ss_dssp TTHHHHHHHHHHHHTTS---EEEEES--SHHHHHHHH-HHT-S---EEEESS---HHHHHHHHHHTSEEEEEES-SHHHH
T ss_pred ccHHHHHHHHHHHCCCC---eeEEEeccCHHHHHHHH-HcCCC---EEECCCCC-HHHHHHHHHcCCcccCCcC-CHHHH
Confidence 34556666667777762 233222 2223333322 22432 44444433 3444444445554433100 01235
Q ss_pred HHHHHcCCCee
Q psy15362 146 MDVLWTGTPVV 156 (200)
Q Consensus 146 lEAma~G~PVV 156 (200)
.+|+.+|..+|
T Consensus 115 ~~A~~~G~~~v 125 (196)
T PF01081_consen 115 MQALEAGADIV 125 (196)
T ss_dssp HHHHHTT-SEE
T ss_pred HHHHHCCCCEE
Confidence 55555555555
No 240
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=59.83 E-value=31 Score=32.22 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=22.6
Q ss_pred cccEEEeCCCCCCchHHHHHHHcCCCeeecCCCc
Q psy15362 129 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 162 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~ 162 (200)
.+|+.+.---...+-.+.||+-.|.|||++.+..
T Consensus 301 ~aDViVvDEqCir~Dileea~k~g~~vIat~~k~ 334 (772)
T COG1152 301 KADVIVVDEQCIREDILEEASKLGIPVIATNEKG 334 (772)
T ss_pred CceEEEecccccchhHHHHHhccCCceEechhHH
Confidence 4677764322223456888999999999987543
No 241
>PRK08618 ornithine cyclodeaminase; Validated
Probab=59.69 E-value=26 Score=29.90 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=23.8
Q ss_pred hcccccEEEeCCCCCCchHHHHHHHcCCCeeec
Q psy15362 126 RGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 126 ~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~ 158 (200)
.++.+|+++.+.+...+... |.+..|+-|++.
T Consensus 189 ~~~~aDiVi~aT~s~~p~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 189 AIEEADIIVTVTNAKTPVFS-EKLKKGVHINAV 220 (325)
T ss_pred HHhcCCEEEEccCCCCcchH-HhcCCCcEEEec
Confidence 34678999877665555556 888899998765
No 242
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=59.32 E-value=66 Score=27.06 Aligned_cols=63 Identities=8% Similarity=-0.015 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc-CCHHHHHhhcccccEEEeC
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-AAKEEHVRRGQLADVCLDT 136 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~-~~~~~~~~~~~~aDv~l~~ 136 (200)
+++.+|+..+.++.++.++++.++. .+..++.++. .. +.+.|.+. -+.+|+. +++.||.++.+
T Consensus 191 ~Yy~~Ai~~i~~~~~~~~f~ifSDD---~~w~k~~l~~--~~-~~~~~~~~~~~~~Dl~-lms~C~~~Iis 254 (298)
T PF01531_consen 191 DYYKKAIEYIREKVKNPKFFIFSDD---IEWCKENLKF--SN-GDVYFSGNNSPYEDLY-LMSQCKHFIIS 254 (298)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCC---HHHHHHHHhh--cC-CcEEEECCCCHHHHHH-HHHhCCcEEEC
Confidence 4678899999999999999999852 4556655543 22 55777776 4457766 68999999866
No 243
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=58.68 E-value=66 Score=26.72 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=44.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeec
Q psy15362 80 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 80 ~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~ 158 (200)
.|+..+..+.+. ..++.+++++++|.. . + +.+.+++ +..+|+++.+.+... .-...+++..|++|++.
T Consensus 29 ~~~~el~aV~dr--~~~~a~~~a~~~g~~-~---~--~~~~eel---l~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~ 97 (271)
T PRK13302 29 LPGLTLSAVAVR--DPQRHADFIWGLRRP-P---P--VVPLDQL---ATHADIVVEAAPASVLRAIVEPVLAAGKKAIVL 97 (271)
T ss_pred CCCeEEEEEECC--CHHHHHHHHHhcCCC-c---c--cCCHHHH---hcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEe
Confidence 478888766543 345667777776642 1 1 1233554 467899988876543 34568889999999975
No 244
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=58.32 E-value=60 Score=28.38 Aligned_cols=90 Identities=12% Similarity=-0.003 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHH------CCCcEEEEEcCCc--ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeC
Q psy15362 65 IDPSTLQMWVNVLKA------VPNSILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT 136 (200)
Q Consensus 65 ~~~~~l~a~~~i~~~------~p~~~l~ivG~~~--~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~ 136 (200)
+.+..++++.+.+.. .++-.+-|+|... .+..++++++++.|+. -+.+|.+..+.+++.. +..|.+.+..
T Consensus 137 G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~-~~~~~~~~~~~~~i~~-~~~A~~niv~ 214 (406)
T cd01967 137 GHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIR-VNATFTGDGTVDELRR-AHRAKLNLVH 214 (406)
T ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhh-CccCCEEEEE
Confidence 344455555543321 1234577777532 2347899999999997 6777887778888886 5667766543
Q ss_pred CCCCCchHHHHHHH--cCCCeee
Q psy15362 137 PLCNGHTTSMDVLW--TGTPVVT 157 (200)
Q Consensus 137 ~~~~~g~~~lEAma--~G~PVV~ 157 (200)
++.. +..+.+.|. .|+|.+.
T Consensus 215 ~~~~-~~~~a~~L~~r~GiP~~~ 236 (406)
T cd01967 215 CSRS-MNYLAREMEERYGIPYME 236 (406)
T ss_pred ChHH-HHHHHHHHHHhhCCCEEE
Confidence 3322 222333332 7999986
No 245
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=57.44 E-value=11 Score=32.28 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=36.3
Q ss_pred HHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec--CCCcchh
Q psy15362 121 EEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL--PGETLAS 165 (200)
Q Consensus 121 ~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~--~g~~~~~ 165 (200)
..+.++|..+.|.|.-.+.+|.+..+-....|+|+|+. +|+.+++
T Consensus 267 ~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fglP~VaFesPGd~~aa 313 (425)
T COG5153 267 GAVRRIYPDARIWLTGHSLGGAIASLLGIRFGLPVVAFESPGDAYAA 313 (425)
T ss_pred HHHHHhCCCceEEEeccccchHHHHHhccccCCceEEecCchhhhhh
Confidence 35566788999999777777788899999999999985 7776654
No 246
>KOG4540|consensus
Probab=57.44 E-value=11 Score=32.28 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=36.3
Q ss_pred HHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec--CCCcchh
Q psy15362 121 EEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL--PGETLAS 165 (200)
Q Consensus 121 ~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~--~g~~~~~ 165 (200)
..+.++|..+.|.|.-.+.+|.+..+-....|+|+|+. +|+.+++
T Consensus 267 ~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fglP~VaFesPGd~~aa 313 (425)
T KOG4540|consen 267 GAVRRIYPDARIWLTGHSLGGAIASLLGIRFGLPVVAFESPGDAYAA 313 (425)
T ss_pred HHHHHhCCCceEEEeccccchHHHHHhccccCCceEEecCchhhhhh
Confidence 35566788999999777777788899999999999985 7776654
No 247
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=57.05 E-value=33 Score=26.05 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccc----c-EEEeCCCCCC-chHHHHHHH-cCCCeee
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCNG-HTTSMDVLW-TGTPVVT 157 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~a----D-v~l~~~~~~~-g~~~lEAma-~G~PVV~ 157 (200)
+.+++.++++|++ +.|.-.=...++..+++.+ | +.++|--|+- +..+.+|+. .++|+|=
T Consensus 33 ~~~~~~a~~~g~~---v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VE 98 (146)
T PRK05395 33 ALLEEEAAELGVE---LEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIE 98 (146)
T ss_pred HHHHHHHHHcCCE---EEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEE
Confidence 3455666666765 5554332234555555443 4 4467766653 678999986 7999994
No 248
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=56.75 E-value=1.3e+02 Score=26.79 Aligned_cols=93 Identities=17% Similarity=0.094 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHH-HHHH---CCCcEEEEEcCCc-------ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccE
Q psy15362 64 KIDPSTLQMWVN-VLKA---VPNSILWLLKFPA-------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADV 132 (200)
Q Consensus 64 K~~~~~l~a~~~-i~~~---~p~~~l~ivG~~~-------~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv 132 (200)
.+.+..++++.+ +..+ .++-.+-|+|... .+.++++++++..|++ -+++|.+..+.+++.. +..|.+
T Consensus 133 ~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~-v~~~~~~~~~~~ei~~-~~~A~~ 210 (427)
T cd01971 133 AGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLK-VNILFGPESNGEELRS-IPKAQF 210 (427)
T ss_pred cHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCe-EEEEECCCCCHHHHHh-cccCcE
Confidence 444455555543 2221 1223465677411 2347899999999997 6677776666778775 556666
Q ss_pred EEeCCCCCCchHHHHHH--HcCCCeeecC
Q psy15362 133 CLDTPLCNGHTTSMDVL--WTGTPVVTLP 159 (200)
Q Consensus 133 ~l~~~~~~~g~~~lEAm--a~G~PVV~~~ 159 (200)
.+..+++ .|....+.| ..|+|.+..+
T Consensus 211 niv~~~~-~g~~~a~~L~~~~giP~i~~~ 238 (427)
T cd01971 211 NLVLSPW-VGLEFAQHLEEKYGQPYIHSP 238 (427)
T ss_pred EEEEcHh-hHHHHHHHHHHHhCCceEecC
Confidence 6555553 234455555 3699998754
No 249
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=56.71 E-value=78 Score=25.34 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc-ccccEE-EeCCCCCCchHHHHHHH---cCCCeeecCC
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRG-QLADVC-LDTPLCNGHTTSMDVLW---TGTPVVTLPG 160 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~-~~aDv~-l~~~~~~~g~~~lEAma---~G~PVV~~~g 160 (200)
+.+-+.++++|+. .+-|-....|+...+ ..+|++ +.|...-||...+-++. -++|.+.+.|
T Consensus 91 ~~v~~~~~~~~i~----~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~ptGG 156 (204)
T TIGR01182 91 PELAKHAQDHGIP----IIPGVATPSEIMLALELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPTGG 156 (204)
T ss_pred HHHHHHHHHcCCc----EECCCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEecCC
Confidence 3444455555553 555555544444443 335555 55433223344444443 3444444444
No 250
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=56.21 E-value=1.5e+02 Score=26.54 Aligned_cols=116 Identities=10% Similarity=0.078 Sum_probs=63.4
Q ss_pred hhhhhhcC-CC-----CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEE
Q psy15362 41 ITSRQQYG-LP-----EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILF 114 (200)
Q Consensus 41 ~~~R~~l~-l~-----~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f 114 (200)
....++|| .+ ++..++....+...- -.....+.++.+..|+.++++.-..+.+.+..++.. |-. -.+.+
T Consensus 32 ~r~~eRfg~~~~~~~~~~p~vWiHaaSVGEv-~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~---~~~-v~h~Y 106 (419)
T COG1519 32 KRLGERFGFYKPPVKPEGPLVWIHAASVGEV-LAALPLVRALRERFPDLRILVTTMTPTGAERAAALF---GDS-VIHQY 106 (419)
T ss_pred HHHHHHhcccCCCCCCCCCeEEEEecchhHH-HHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc---CCC-eEEEe
Confidence 55666777 22 233444443333211 123445566788999999998653333444444433 322 23444
Q ss_pred eccCCHHHHHhh--cccccEEEeCCCCCCchHHHHHHHcCCCeeecCCC
Q psy15362 115 SNVAAKEEHVRR--GQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 161 (200)
Q Consensus 115 ~g~~~~~~~~~~--~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~ 161 (200)
++.=..--+.++ +-.-|+.+..=.+--++.+.|+-..|+|.+.-++.
T Consensus 107 lP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR 155 (419)
T COG1519 107 LPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNAR 155 (419)
T ss_pred cCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee
Confidence 544211222222 34567776432222369999999999999987763
No 251
>PRK06091 membrane protein FdrA; Validated
Probab=56.02 E-value=86 Score=29.15 Aligned_cols=94 Identities=17% Similarity=0.090 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCCCcEEEeccC---------CHHHHHhhccc---ccEEEeCC--CCCC-chHHHHHH-HcCCCeeec-
Q psy15362 96 ANIQATAQALGLDQHRILFSNVA---------AKEEHVRRGQL---ADVCLDTP--LCNG-HTTSMDVL-WTGTPVVTL- 158 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~---------~~~~~~~~~~~---aDv~l~~~--~~~~-g~~~lEAm-a~G~PVV~~- 158 (200)
..+-.++.+.|+.-.+++=+|.. ...|+..++.. ..+.+.-+ |.++ ...+++++ .+++|||+.
T Consensus 207 ~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~~fl~aar~~~KPVVvlk 286 (555)
T PRK06091 207 QELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKIINAMKATGKPVVALF 286 (555)
T ss_pred HHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHhhCCCCEEEEE
Confidence 45667777777654666667765 34556655532 33332211 2232 34677764 469999986
Q ss_pred CCCcchhhhHHHHHhhcCCCcceecCHHHHHHHHHHhhc
Q psy15362 159 PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 197 (200)
Q Consensus 159 ~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~ 197 (200)
.|....++ +..|+ +.+++-++....+..|+.
T Consensus 287 ~Grs~~g~------~q~GV--i~a~tleEl~~~A~~la~ 317 (555)
T PRK06091 287 LGYTPAVA------RDENV--WFASTLDEAARLACLLSR 317 (555)
T ss_pred ecCCchhh------hcCCe--EEeCCHHHHHHHHHHHhc
Confidence 55443332 22333 667999999999888775
No 252
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=55.52 E-value=1.1e+02 Score=24.63 Aligned_cols=44 Identities=7% Similarity=0.050 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCC
Q psy15362 64 KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLD 108 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~ 108 (200)
++.-....++....+.+++. ++.+|..+...-++.+++++.++.
T Consensus 104 ~g~TRs~aam~~a~~~~~~~-IvvIGNAPTAL~~l~eli~~g~~~ 147 (203)
T PRK05954 104 PGKTRTETGLLKCAQQYPEA-IYVIGNAPTALLALCQQIRAGRVK 147 (203)
T ss_pred cCCcHHHHHHHHHHHHCCCC-EEEEeCCHHHHHHHHHHHHcCCCC
Confidence 44444555666666666777 667775433344566666665555
No 253
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=54.62 E-value=23 Score=27.57 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=22.3
Q ss_pred ccccEEEeCCCCCCchHHHHHHHcCCCeeec
Q psy15362 128 QLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 128 ~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~ 158 (200)
.--|++||||- ++|+|...|..+|.-.|..
T Consensus 190 ~~gdiVlDpF~-GSGTT~~aa~~l~R~~ig~ 219 (231)
T PF01555_consen 190 NPGDIVLDPFA-GSGTTAVAAEELGRRYIGI 219 (231)
T ss_dssp -TT-EEEETT--TTTHHHHHHHHTT-EEEEE
T ss_pred ccceeeehhhh-ccChHHHHHHHcCCeEEEE
Confidence 34699999874 5699999999999998874
No 254
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=54.49 E-value=70 Score=25.61 Aligned_cols=48 Identities=13% Similarity=-0.000 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEE
Q psy15362 65 IDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRIL 113 (200)
Q Consensus 65 ~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~ 113 (200)
.-+..+..+.+++...-...+.++|.. .+...++..+.+++|++++|.
T Consensus 119 ~C~~C~~~~~~l~a~~~~~Diylvgs~-~dD~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 119 DCVACDARVQRLLADNAPLDLYLVGSQ-GDDERIRQWANRHQIDPAKVR 166 (200)
T ss_pred CChHHHHHHHHHhcCCCceeEEEecCC-CCHHHHHHHHHHcCCCHHHee
Confidence 345666666777666666889999953 457899999999999865553
No 255
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=54.44 E-value=65 Score=25.00 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCcEEEEEcCCc---ccH----------HHHHHHHHHcCCCCCcEEEeccC
Q psy15362 68 STLQMWVNVLKAVPNSILWLLKFPA---VGE----------ANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 68 ~~l~a~~~i~~~~p~~~l~ivG~~~---~~~----------~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
..|+.+++.+++.|..+++|.|+.. ... +.++......|+.++||...|+=
T Consensus 100 ~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~~~i~~~G~G 163 (190)
T COG2885 100 ATLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGVVADRISTVGYG 163 (190)
T ss_pred HHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCCCcccEEEEEcC
Confidence 5678888899999999999999631 110 23455666778766888888874
No 256
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=53.92 E-value=25 Score=32.11 Aligned_cols=72 Identities=11% Similarity=0.004 Sum_probs=49.2
Q ss_pred CcEEEEEcCCc-c----cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCC-CCCCchHHHHHHHcCCCe
Q psy15362 82 NSILWLLKFPA-V----GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPV 155 (200)
Q Consensus 82 ~~~l~ivG~~~-~----~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~-~~~~g~~~lEAma~G~PV 155 (200)
+..=+++|.-+ . .-++|++++++.|.. ..++..|.++.+.+.. +...|+||... |. +++.+.-..-+||
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK-~yl~~vgkinpaKLaN-F~eID~fV~vaCPr---~sidd~~~F~KPV 356 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTAGKK-HYLFVVGKPNPAKLAN-FEDIDIFVLLGCSQ---SGIIDSNEFYRPI 356 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCc-EEEEEeCCCCHHHHhC-CCCCCEEEEccCCC---cccccHhhCCCce
Confidence 44556677422 1 136788999999998 8999999999877754 45799998653 32 3344555566777
Q ss_pred eec
Q psy15362 156 VTL 158 (200)
Q Consensus 156 V~~ 158 (200)
||.
T Consensus 357 lTP 359 (496)
T TIGR00272 357 VTP 359 (496)
T ss_pred ecH
Confidence 764
No 257
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=53.82 E-value=54 Score=29.20 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred HHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccC-----------------CHHHHHhhcccccEEEeCC
Q psy15362 75 NVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-----------------AKEEHVRRGQLADVCLDTP 137 (200)
Q Consensus 75 ~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~-----------------~~~~~~~~~~~aDv~l~~~ 137 (200)
++.....+.+++++|.|+..+...+.+ ...|. .++.+..+. +.+++...+..+|+++.+.
T Consensus 174 ~~~~~l~~kkvlviGaG~~a~~va~~L-~~~g~--~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT 250 (414)
T PRK13940 174 RQLDNISSKNVLIIGAGQTGELLFRHV-TALAP--KQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAV 250 (414)
T ss_pred HHhcCccCCEEEEEcCcHHHHHHHHHH-HHcCC--CEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECc
Confidence 333334567788888654333333333 34455 345555443 2345556677899999775
Q ss_pred CCCCchHHHHHHHcCCCeeec
Q psy15362 138 LCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 138 ~~~~g~~~lEAma~G~PVV~~ 158 (200)
.-...+...| +..+.|.+..
T Consensus 251 ~a~~~vi~~~-~~~~~~~~~i 270 (414)
T PRK13940 251 NVLEYIVTCK-YVGDKPRVFI 270 (414)
T ss_pred CCCCeeECHH-HhCCCCeEEE
Confidence 4333332233 3456777653
No 258
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=53.62 E-value=34 Score=21.66 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=43.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec
Q psy15362 81 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 81 p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~ 158 (200)
.+..+.+.+.....++.++++++++|-. + .... -...+.++.........-..+|.+.|+|+|..
T Consensus 7 ~g~~f~i~~~~~~~~~~l~~~i~~~GG~---v--~~~~--------~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~ 71 (78)
T PF00533_consen 7 EGCTFCISGFDSDEREELEQLIKKHGGT---V--SNSF--------SKKTTHVIVGNPNKRTKKYKAAIANGIPIVSP 71 (78)
T ss_dssp TTEEEEESSTSSSHHHHHHHHHHHTTEE---E--ESSS--------STTSSEEEESSSHCCCHHHHHHHHTTSEEEET
T ss_pred CCEEEEEccCCCCCHHHHHHHHHHcCCE---E--Eeec--------ccCcEEEEeCCCCCccHHHHHHHHCCCeEecH
Confidence 3567777343335578899999998863 3 2222 24567776544434457799999999999973
No 259
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=53.24 E-value=48 Score=25.70 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCcc-c--H----------HHHHHHHHHcCCCCCcEEEeccC
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPAV-G--E----------ANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~~-~--~----------~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
...++.++..+++.|+.++.|.|+... . . ..+++.....|++++|+...|+=
T Consensus 85 ~~~L~~~a~~L~~~p~~~v~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G 149 (173)
T PRK10802 85 AQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYG 149 (173)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEec
Confidence 456788888899999999999996321 1 0 23455666779988888887764
No 260
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=51.78 E-value=69 Score=21.32 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=37.6
Q ss_pred EEEEEcCCccc-----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeee
Q psy15362 84 ILWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 84 ~l~ivG~~~~~-----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~ 157 (200)
+.+++++.|.. ..++++.+++.++. ..+..... .++...+..+|+++.+.+... ..++|+|.
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~-~~v~~~~~---~~~~~~~~~~Dliist~~~~~--------~~~~p~i~ 68 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGID-VKVEQCKI---AEVPSLLDDADLIVSTTKVPE--------DYGIPVIN 68 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEecH---HHhhcccCCCcEEEEcCCcCC--------CCCCCEEE
Confidence 34555544432 35678888888885 55543333 344434678999998876432 23578875
No 261
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=51.55 E-value=39 Score=25.71 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=32.1
Q ss_pred hHHHHHH-HcCCCeeecC-----------CCcchhhhHHHHHhhcCCCcceecCHHHH
Q psy15362 143 TTSMDVL-WTGTPVVTLP-----------GETLASRVAASQLATLGCPELIARTHKEY 188 (200)
Q Consensus 143 ~~~lEAm-a~G~PVV~~~-----------g~~~~~r~~~~~~~~~g~~~~ia~~~~~y 188 (200)
+.+.+|. ..++|||... +....++.+...+..++++-...++.++.
T Consensus 74 ~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i~~~~i~~~e~~ 131 (157)
T TIGR03845 74 NALASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGIPYTIPREPEEA 131 (157)
T ss_pred HHHHHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCCCeEEeCCHHHH
Confidence 5588999 9999999865 33334566667778888876555555544
No 262
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=51.54 E-value=34 Score=24.54 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHH-HcCCCCCcEEEecc
Q psy15362 66 DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQ-ALGLDQHRILFSNV 117 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~-~~gl~~~rv~f~g~ 117 (200)
...+.+++..+.....+..+++.|+. ..-..+++.+. ++|++.+++.+.||
T Consensus 64 ~~~l~~al~~~~~~~~~~~vW~AgE~-~~~r~lR~~l~~~~g~~~~~~~~~gY 115 (119)
T PF04954_consen 64 GSALADALRDLPLPAGDGYVWVAGEA-SAVRALRRHLREERGLPRDRIYASGY 115 (119)
T ss_dssp -HHHHHHHTTS---SS-EEEEEEEEH-HHHHHHHHHHHHH----GGGEEEEEE
T ss_pred HHHHHHHHHHhhccCCCeEEEEEecH-HHHHHHHHHHHHhhCCCHHHeEEEEe
Confidence 35566766665543457888888863 34466777765 77998889999886
No 263
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=51.39 E-value=98 Score=22.94 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHH-CCCcEEEEEcCCc----ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc
Q psy15362 67 PSTLQMWVNVLKA-VPNSILWLLKFPA----VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG 127 (200)
Q Consensus 67 ~~~l~a~~~i~~~-~p~~~l~ivG~~~----~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~ 127 (200)
..+-+...++.++ .++.++++ |+.. ...+..++.++++|++ .+|.+..+.+++..++
T Consensus 69 ~~~~~~~~~L~~~~~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~---~vf~~~~~~~~i~~~l 130 (137)
T PRK02261 69 IDCRGLREKCIEAGLGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFD---RVFPPGTDPEEAIDDL 130 (137)
T ss_pred HHHHHHHHHHHhcCCCCCeEEE-ECCCCCCccChHHHHHHHHHcCCC---EEECcCCCHHHHHHHH
Confidence 3444444555555 34665544 4322 1235667788889986 5677777777776654
No 264
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=51.24 E-value=1.3e+02 Score=24.18 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=57.8
Q ss_pred hhhhhhcCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc-cHHHHHHHHHHcCCCCCcEEEeccCC
Q psy15362 41 ITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~-~~~~l~~~~~~~gl~~~rv~f~g~~~ 119 (200)
+..+++|.......+++..|.-.-+-|-++. ...+....-++.+++.|+... ..+..+...+.+++. .-+......
T Consensus 38 ~~i~~~~~~~~~~~v~vlcG~GnNGGDG~Va-AR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~-~~v~~~~~~- 114 (203)
T COG0062 38 RAILREYPLGRARRVLVLCGPGNNGGDGLVA-ARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIG-GVVKIKELE- 114 (203)
T ss_pred HHHHHHcCcccCCEEEEEECCCCccHHHHHH-HHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCC-cceeecccc-
Confidence 3445555443233444455555444444433 344444444677777775322 123333444444442 222222221
Q ss_pred HHHHHhhcccccEEEeCCC-CC--C----c-hHHHHHHH-cCCCeeecC
Q psy15362 120 KEEHVRRGQLADVCLDTPL-CN--G----H-TTSMDVLW-TGTPVVTLP 159 (200)
Q Consensus 120 ~~~~~~~~~~aDv~l~~~~-~~--~----g-~~~lEAma-~G~PVV~~~ 159 (200)
+ ....+|+.+|..- .+ + + -+++|++- +|+|||+.+
T Consensus 115 --~---~~~~~dvIVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVD 158 (203)
T COG0062 115 --D---EPESADVIVDALFGTGLSGPLREPFASLIEAINASGKPIVAVD 158 (203)
T ss_pred --c---ccccCCEEEEeceecCCCCCCccHHHHHHHHHHhcCCceEEEe
Confidence 1 4578999999731 11 1 1 45888887 999999864
No 265
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=51.15 E-value=53 Score=24.79 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccc----c-EEEeCCCCC-CchHHHHHHH-cCCCeee
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVLW-TGTPVVT 157 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~a----D-v~l~~~~~~-~g~~~lEAma-~G~PVV~ 157 (200)
+.+++.++++|++ +.|.-.=...++..+++.+ | +.++|--|+ -+..+.+|++ .++|+|=
T Consensus 31 ~~~~~~a~~~g~~---v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vE 96 (141)
T TIGR01088 31 EIIETFAAQLNVE---LEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVE 96 (141)
T ss_pred HHHHHHHHHcCCE---EEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEE
Confidence 4456667777775 5654333334566555444 4 456776665 3678999986 8999994
No 266
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=51.10 E-value=1.3e+02 Score=25.11 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH-cCCCeeecCCCc
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGET 162 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~~ 162 (200)
+.|++.-+++|+. +.+.-...+++......+|++=-+...-.-+.+++|.+ +|+||....|..
T Consensus 71 ~~L~~vk~~~Glp----vvTeV~~~~~~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~ 134 (264)
T PRK05198 71 KILQEVKETFGVP----VLTDVHEPEQAAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQF 134 (264)
T ss_pred HHHHHHHHHHCCc----eEEEeCCHHHHHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCc
Confidence 4566777788986 66666666777777778999966654344467888876 899999998854
No 267
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=51.07 E-value=1.1e+02 Score=25.55 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=36.8
Q ss_pred CcEEEeccCCHHHHHhhc--ccccEEEeCC-CCCC---chHHHHHHHcCCCeeecC
Q psy15362 110 HRILFSNVAAKEEHVRRG--QLADVCLDTP-LCNG---HTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 110 ~rv~f~g~~~~~~~~~~~--~~aDv~l~~~-~~~~---g~~~lEAma~G~PVV~~~ 159 (200)
..+++.|+...+.+..++ +..|+++|.+ ||.. -+.+-=|--.|+|.+-..
T Consensus 45 ~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 45 GPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred CCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 347889999988988887 4589999976 6653 233444556899999864
No 268
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=50.79 E-value=1.5e+02 Score=26.50 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=24.5
Q ss_pred EEEeCCCCCCCHHHHHHHH-HHHHHCCCcEEEEEcC
Q psy15362 56 YCNFNQLYKIDPSTLQMWV-NVLKAVPNSILWLLKF 90 (200)
Q Consensus 56 ~~~~~r~~K~~~~~l~a~~-~i~~~~p~~~l~ivG~ 90 (200)
.|+-+-...+.+..+.++. .+.+..|++.+.++-.
T Consensus 6 ~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~ 41 (426)
T PRK10017 6 LGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSR 41 (426)
T ss_pred EccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3444445667666666665 5778899999999864
No 269
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=50.09 E-value=23 Score=29.16 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHHHhhcccccEEEeCCCCC-CchHHHHHHHcCC-CeeecCC
Q psy15362 121 EEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTGT-PVVTLPG 160 (200)
Q Consensus 121 ~~~~~~~~~aDv~l~~~~~~-~g~~~lEAma~G~-PVV~~~g 160 (200)
.++...|+.+...|.|.-.+ ...-+.|||++|+ |||..++
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~ 269 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDD 269 (302)
T ss_pred hHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCc
Confidence 56788889999998865554 3567999999995 7877543
No 270
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=49.89 E-value=1.4e+02 Score=24.38 Aligned_cols=100 Identities=20% Similarity=0.115 Sum_probs=50.1
Q ss_pred HHHHHHCCCcEEEEEcCCccc--HHHHHHHHHHcCCCC---------CcEEEeccCCHHHHHhhcc-----cccEEEeCC
Q psy15362 74 VNVLKAVPNSILWLLKFPAVG--EANIQATAQALGLDQ---------HRILFSNVAAKEEHVRRGQ-----LADVCLDTP 137 (200)
Q Consensus 74 ~~i~~~~p~~~l~ivG~~~~~--~~~l~~~~~~~gl~~---------~rv~f~g~~~~~~~~~~~~-----~aDv~l~~~ 137 (200)
.+.++...=-|+.++- +... .+.+++...+.|++- +... .++++.+.+..... .+|.++.+.
T Consensus 112 ~~AL~alg~~RIalvT-PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~-ia~i~p~~i~~~~~~~~~~~aDAifisC 189 (239)
T TIGR02990 112 VDGLAALGVRRISLLT-PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDRE-MARISPDCIVEAALAAFDPDADALFLSC 189 (239)
T ss_pred HHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCce-eeecCHHHHHHHHHHhcCCCCCEEEEeC
Confidence 3344444334555553 3321 356777788878741 1111 34566666665543 356554332
Q ss_pred CCCCchHHHHHHH--cCCCeeecCCCcchhhhHHHHHhhcCCCcc
Q psy15362 138 LCNGHTTSMDVLW--TGTPVVTLPGETLASRVAASQLATLGCPEL 180 (200)
Q Consensus 138 ~~~~g~~~lEAma--~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ 180 (200)
--=...-+++.+- .|+|||+++.. .....++..|++..
T Consensus 190 TnLrt~~vi~~lE~~lGkPVlsSNqa-----t~W~~Lr~~G~~~~ 229 (239)
T TIGR02990 190 TALRAATCAQRIEQAIGKPVVTSNQA-----TAWRCLRLCGDPDM 229 (239)
T ss_pred CCchhHHHHHHHHHHHCCCEEEHHHH-----HHHHHHHHcCCCCC
Confidence 1001223433332 79999997532 12345666676543
No 271
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.79 E-value=73 Score=28.57 Aligned_cols=72 Identities=10% Similarity=-0.045 Sum_probs=48.6
Q ss_pred cEEEEEcCCc--ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHH--HcCCCeee
Q psy15362 83 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVT 157 (200)
Q Consensus 83 ~~l~ivG~~~--~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAm--a~G~PVV~ 157 (200)
-.+-|+|+-. .+..+++++++++|+. -+.+|.+..+.+++.. +..|.+.+..++. .+..+.+.| -.|+|.+.
T Consensus 198 ~~VNiiG~~~~~~d~~el~~lL~~~Gl~-v~~~~~~~~s~eei~~-~~~A~lniv~~~~-~~~~~a~~L~e~~GiP~~~ 273 (456)
T TIGR01283 198 HDINLIGEFNVAGEFWHVKPLLEKLGIR-VLATITGDSRYAEVQT-AHRAKLNMVQCSK-SMINLARKMEEKYGIPYFE 273 (456)
T ss_pred CcEEEEcCCCCcccHHHHHHHHHHcCCe-EEEEeCCCCcHHHHHh-cccCcEEEEECHh-HHHHHHHHHHHHcCCCEEe
Confidence 3567777522 2346899999999997 6667888877788875 4556666543332 234566666 46999986
No 272
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=49.25 E-value=93 Score=22.03 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=41.2
Q ss_pred EEEEEcCCccc----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc--ccccEEEeCCCCCCchHHHHHH--HcCCCe
Q psy15362 84 ILWLLKFPAVG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRG--QLADVCLDTPLCNGHTTSMDVL--WTGTPV 155 (200)
Q Consensus 84 ~l~ivG~~~~~----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~--~~aDv~l~~~~~~~g~~~lEAm--a~G~PV 155 (200)
++++++++|.. ...+++.+++.|++ -.|...+. .++.... ..+|+++.+..-..-..-++.. ..|+||
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~---~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv 78 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITA---TEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPV 78 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecH---HHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCE
Confidence 34555544432 35678889999996 33443333 3444332 3589998764311112234444 378999
Q ss_pred eecCC
Q psy15362 156 VTLPG 160 (200)
Q Consensus 156 V~~~g 160 (200)
...+.
T Consensus 79 ~~I~~ 83 (104)
T PRK09590 79 VQIPP 83 (104)
T ss_pred EEeCH
Confidence 98654
No 273
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=49.20 E-value=1.6e+02 Score=25.46 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=66.6
Q ss_pred hhhhhhcCCCCCCEEEEEeCCCCCC----CHHHHHHHHHHH-H-H--CCCcEEEEEcCCcc---cHHHHHHHHHHcCCCC
Q psy15362 41 ITSRQQYGLPEDAIVYCNFNQLYKI----DPSTLQMWVNVL-K-A--VPNSILWLLKFPAV---GEANIQATAQALGLDQ 109 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~~r~~K~----~~~~l~a~~~i~-~-~--~p~~~l~ivG~~~~---~~~~l~~~~~~~gl~~ 109 (200)
..++++++. .++........+. .+..++++.+-+ + . ...-.+-|+|.... +..+++++.++.|++
T Consensus 98 ~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~- 173 (398)
T PF00148_consen 98 RELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIE- 173 (398)
T ss_dssp HHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEE-
T ss_pred HHhhcccCC---cEEEEECCCccCCccchHHHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCc-
Confidence 456666666 3454444333332 333444444333 1 1 11235666675322 346899999999996
Q ss_pred CcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH--cCCCeeec
Q psy15362 110 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVTL 158 (200)
Q Consensus 110 ~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~PVV~~ 158 (200)
-+.+|.+..+.+++.. +..|++.+...++ ++....|.|. .|+|.+..
T Consensus 174 v~~~~~~~~t~~e~~~-~~~A~lniv~~~~-~~~~~a~~L~e~~giP~~~~ 222 (398)
T PF00148_consen 174 VNAVFPGGTTLEEIRK-APEAALNIVLCPE-GGPYAAEWLEERFGIPYLYF 222 (398)
T ss_dssp EEEEEETTBCHHHHHH-GGGSSEEEESSCC-HHHHHHHHHHHHHT-EEEEE
T ss_pred eEEEeCCCCCHHHHHh-CCcCcEEEEeccc-hhhHHHHHHHHHhCCCeeec
Confidence 7788888888888875 5677777766554 3334777776 59999984
No 274
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=49.20 E-value=32 Score=29.68 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=50.6
Q ss_pred CcEEEEEcCCc-cc----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCC-CCCCchHHHHHHHcCCCe
Q psy15362 82 NSILWLLKFPA-VG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPV 155 (200)
Q Consensus 82 ~~~l~ivG~~~-~~----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~-~~~~g~~~lEAma~G~PV 155 (200)
+..=+++|.-+ .. .+++++++++.|.. -.++.+|.++.+.+.. +...|+|+.++ |. +++-+.-..-+||
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk-~y~i~~~~in~~kL~n-f~eiD~fV~~aCPr---~sidd~~~f~kPv 307 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKT-VLIILLSNVSPAKLLM-FDQIDVFVQVACPR---IAIDDGYLFNKPL 307 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCc-EEEEEeCCCCHHHHhC-CCCcCEEEEecCCC---ceecchhhcCCcc
Confidence 34455666422 21 35788899999997 8899999998877654 55799998653 42 5566677777888
Q ss_pred eec
Q psy15362 156 VTL 158 (200)
Q Consensus 156 V~~ 158 (200)
+|.
T Consensus 308 lTP 310 (332)
T TIGR00322 308 LTP 310 (332)
T ss_pred ccH
Confidence 874
No 275
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=48.93 E-value=1.3e+02 Score=24.36 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=7.2
Q ss_pred HHHHHHHcCCCe
Q psy15362 144 TSMDVLWTGTPV 155 (200)
Q Consensus 144 ~~lEAma~G~PV 155 (200)
..+.++..|.+-
T Consensus 228 ~~~~~~~~g~~~ 239 (280)
T cd06303 228 AELDAIQQGELD 239 (280)
T ss_pred HHHHHHHcCCce
Confidence 455666667663
No 276
>PRK07742 phosphate butyryltransferase; Validated
Probab=48.24 E-value=1.3e+02 Score=25.40 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCC-CCCcEEEeccCCHHHH----Hhhc--ccccEEEeC
Q psy15362 66 DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGL-DQHRILFSNVAAKEEH----VRRG--QLADVCLDT 136 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl-~~~rv~f~g~~~~~~~----~~~~--~~aDv~l~~ 136 (200)
.+..+++..+.+++.. ++++++|+ ++.+++.++++|+ ..+++.+...-..++- ..+. ..+|.++..
T Consensus 25 d~~vl~Aa~~a~~e~~-~~~iLvG~----~~~I~~~~~~~~l~~~~~~~Ii~~~~~~~s~~~a~~lV~~G~aD~lvsG 97 (299)
T PRK07742 25 DEEVIEAVAKAIELQL-ARFRLYGN----QEKIMGMLQEHGLQTSEHIEIIHAQSSAEAAELAVKAVRNGEADVLMKG 97 (299)
T ss_pred CHHHHHHHHHHHHcCC-ceEEEECC----HHHHHHHHHHCCCCCCCCcEEECCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 3568888888887776 99999985 4678889999888 4367777766443331 1223 378999843
No 277
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=48.19 E-value=11 Score=26.09 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=18.4
Q ss_pred ccceeeEeeeCeeeccccccc
Q psy15362 3 ASGQVQTSVNGIVLQNGLATN 23 (200)
Q Consensus 3 ~~~~~~~~~~gi~i~ng~~~~ 23 (200)
++++.+|.++|+-+|||+.++
T Consensus 45 ~t~~~~vl~~~L~fpNGVals 65 (89)
T PF03088_consen 45 STKETTVLLDGLYFPNGVALS 65 (89)
T ss_dssp TTTEEEEEEEEESSEEEEEE-
T ss_pred CCCeEEEehhCCCccCeEEEc
Confidence 578999999999999999876
No 278
>PRK05805 phosphate butyryltransferase; Validated
Probab=47.56 E-value=70 Score=27.14 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCH-HHH---Hhh--cccccEEEe
Q psy15362 66 DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK-EEH---VRR--GQLADVCLD 135 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~-~~~---~~~--~~~aDv~l~ 135 (200)
.+..+++..++. +.+.++++++|+ ++.++++++++++..+++.+...-.. +.. ..+ ...+|.++-
T Consensus 27 d~~vl~Aa~~~~-~~~~~~~iLVGd----~~~I~~~l~~~~l~~~~ieIi~a~d~i~a~~~A~~lVk~GeADa~v~ 97 (301)
T PRK05805 27 DEPVLEAVKEAK-ELGIANAILVGD----KEKIKEIAKEIDMDLEDFEIIDEKDNRKAALKAVELVSSGKADMVMK 97 (301)
T ss_pred CHHHHHHHHHHH-HCCCceEEEECC----HHHHHHHHHHcCCCccCcEEECCCCcHHHHHHHHHHHHCCCCCEEec
Confidence 467888888754 468899999985 36788888888875467777665331 111 011 346888874
No 279
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.37 E-value=85 Score=27.61 Aligned_cols=74 Identities=11% Similarity=-0.016 Sum_probs=48.6
Q ss_pred CcEEEEEcCCc--ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHH--HcCCCeee
Q psy15362 82 NSILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVT 157 (200)
Q Consensus 82 ~~~l~ivG~~~--~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAm--a~G~PVV~ 157 (200)
+-.+-|+|+.. .+..++++++++.|+. -+.+|.+..+.+++.. +..|.+.+..++.. +.-+.+.| -.|+|.+.
T Consensus 158 ~~~VNiig~~~~~~d~~el~~lL~~~Gl~-v~~~~~~~~s~eei~~-~~~A~lniv~~~~~-~~~~a~~L~~~fGip~~~ 234 (410)
T cd01968 158 PYDINLIGEFNVAGELWGVKPLLEKLGIR-VLASITGDSRVDEIRR-AHRAKLNVVQCSKS-MIYLARKMEEKYGIPYIE 234 (410)
T ss_pred CCcEEEECCCCCcccHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHh-hhhCcEEEEEchhH-HHHHHHHHHHHhCCCeEe
Confidence 34677777422 2346899999999997 6667888878788876 45666665433322 23345555 37999886
Q ss_pred c
Q psy15362 158 L 158 (200)
Q Consensus 158 ~ 158 (200)
.
T Consensus 235 ~ 235 (410)
T cd01968 235 V 235 (410)
T ss_pred c
Confidence 3
No 280
>COG4302 EutC Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]
Probab=46.28 E-value=60 Score=27.00 Aligned_cols=86 Identities=13% Similarity=-0.026 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcCCcc----------cHHHHHHHHHHcCCCCCcEEE--eccCCH-HHHHhhcccc
Q psy15362 64 KIDPSTLQMWVNVLKAVPNSILWLLKFPAV----------GEANIQATAQALGLDQHRILF--SNVAAK-EEHVRRGQLA 130 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~----------~~~~l~~~~~~~gl~~~rv~f--~g~~~~-~~~~~~~~~a 130 (200)
+..+..++.+..=..++|+..+++ ++|-. -.+.+.+-++..|++.+.++| .|++.. +++-..+ .|
T Consensus 142 rldeesv~~lk~~~~~npdvqivV-aDGLSa~AI~an~~~il~~l~eglk~~G~svgt~~fVk~gRVa~aD~IgE~L-gA 219 (294)
T COG4302 142 RLDEESVEALKAHCVANPDVQIVV-ADGLSALAITANYEPILPPLMEGLKAAGLSVGTPFFVKYGRVAVADQIGEIL-GA 219 (294)
T ss_pred ccCHHHHHHHHHhhccCCCeEEEe-cCcccHHHHHhhHHHHHHHHHHHHHhcCcccCChhheeecchhhHHHHHHHh-CC
Confidence 445667777766566689888765 55321 123456677888988777777 567774 5665555 45
Q ss_pred cEEEeCCCCCCchHHHHHHHc
Q psy15362 131 DVCLDTPLCNGHTTSMDVLWT 151 (200)
Q Consensus 131 Dv~l~~~~~~~g~~~lEAma~ 151 (200)
++.+.-.-+--|++.-|+|++
T Consensus 220 kvviiLIGERPGL~t~eSls~ 240 (294)
T COG4302 220 KVVIILIGERPGLSTPESLSL 240 (294)
T ss_pred cEEEEEeccCCCCCCccccee
Confidence 555432222226677777765
No 281
>PRK06270 homoserine dehydrogenase; Provisional
Probab=45.85 E-value=1.7e+02 Score=25.19 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=22.9
Q ss_pred ccccEEEeCCCC--CC---c-hHHHHHHHcCCCeeecC
Q psy15362 128 QLADVCLDTPLC--NG---H-TTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 128 ~~aDv~l~~~~~--~~---g-~~~lEAma~G~PVV~~~ 159 (200)
...|++++..+. .+ + ..+.+|+..|++||+.+
T Consensus 88 ~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaN 125 (341)
T PRK06270 88 VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSN 125 (341)
T ss_pred cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCC
Confidence 358999986542 11 1 34689999999999953
No 282
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=45.78 E-value=1.4e+02 Score=26.52 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=29.7
Q ss_pred EEeccCCHHHHHhhcccccEEEeCCC-CCCchHHHHHHHcCCCeeecC
Q psy15362 113 LFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 113 ~f~g~~~~~~~~~~~~~aDv~l~~~~-~~~g~~~lEAma~G~PVV~~~ 159 (200)
++.|.-...++.. ...+|+++.... ..|-..+++|+.+|++|.+-+
T Consensus 76 v~~G~~~~~~l~~-~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 76 VLAGEEGLCELAA-LPEADVVVAAIVGAAGLLPTLAAIRAGKRIALAN 122 (385)
T ss_pred EEEChhHHHHHhc-CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeC
Confidence 5556533333332 234799988764 334457999999999998743
No 283
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=45.65 E-value=1.2e+02 Score=25.67 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=24.1
Q ss_pred HHhhcc--cccEEEeCCCCCC--chHHHHHHH--cCCCeee
Q psy15362 123 HVRRGQ--LADVCLDTPLCNG--HTTSMDVLW--TGTPVVT 157 (200)
Q Consensus 123 ~~~~~~--~aDv~l~~~~~~~--g~~~lEAma--~G~PVV~ 157 (200)
+....+ ..|+++-.|..+| .--++++|+ |..|+|-
T Consensus 97 L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 97 LLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 333444 6799987664333 456999998 6889994
No 284
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=45.49 E-value=83 Score=25.38 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCcEEEEEcCCcc---cH----------HHHHHHHHHcCCCCCcEEEeccC
Q psy15362 68 STLQMWVNVLKAVPNSILWLLKFPAV---GE----------ANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 68 ~~l~a~~~i~~~~p~~~l~ivG~~~~---~~----------~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
..++.++.+++++|+.++.|.|+... .. +.+.++..+.|++++|+...|+-
T Consensus 129 ~~L~~ia~~L~~~p~~~I~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~G~G 192 (219)
T PRK10510 129 NTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMG 192 (219)
T ss_pred HHHHHHHHHHHhCCCceEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEc
Confidence 45667777888899999999996321 11 23445666779988999998873
No 285
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=45.20 E-value=40 Score=26.36 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccc--cEEEeCCCCCCchHHH
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA--DVCLDTPLCNGHTTSM 146 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~a--Dv~l~~~~~~~g~~~l 146 (200)
....+.++.++.|+.++++-.....+.+..++.... . ..+.+++.=-...+..+++.. |+++..-.+=-++-+.
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~---v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPnll~ 112 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-R---VDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPNLLR 112 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-G----SEEE---SSHHHHHHHHHHH--SEEEEES----HHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-C---eEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHHHHH
Confidence 445556677788999999977543444545544322 2 234554432123344444432 7776432211257788
Q ss_pred HHHHcCCCeeecCCC
Q psy15362 147 DVLWTGTPVVTLPGE 161 (200)
Q Consensus 147 EAma~G~PVV~~~g~ 161 (200)
+|-..|+|++..+|.
T Consensus 113 ~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 113 EAKRRGIPVVLVNAR 127 (186)
T ss_dssp H-----S-EEEEEE-
T ss_pred HHhhcCCCEEEEeee
Confidence 888999999987654
No 286
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=45.20 E-value=2.3e+02 Score=25.47 Aligned_cols=109 Identities=18% Similarity=0.130 Sum_probs=61.3
Q ss_pred eeCeeecccccccccCCCCCCCCCCCchh--hhhhhhhcCC-C--CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEE
Q psy15362 11 VNGIVLQNGLATNQTNTKTATGEEVPQSI--VITSRQQYGL-P--EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSIL 85 (200)
Q Consensus 11 ~~gi~i~ng~~~~~~~~~~~~~~~~~~~~--~~~~R~~l~l-~--~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l 85 (200)
+..+|+.|+-|.+.+.|- +.. ...+++.+|- . -+...++.+|.. | +......+..++....++.+
T Consensus 202 ~s~vPVINAgdg~~~HPt--------QaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~-~-~~rv~~Sl~~~la~~~G~~v 271 (429)
T PRK11891 202 ATNLPVINGGDGPGEHPS--------QALLDLYTIQREFSRLGKIVDGAHIALVGDL-K-YGRTVHSLVKLLALYRGLKF 271 (429)
T ss_pred hCCCCEEECCCCCCCCcH--------HHHHHHHHHHHHhCccCCCcCCCEEEEECcC-C-CChHHHHHHHHHHHhcCCEE
Confidence 356899999876654321 111 2456677652 1 123455666654 2 22355777777666667899
Q ss_pred EEEcCCcc-cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCC
Q psy15362 86 WLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP 137 (200)
Q Consensus 86 ~ivG~~~~-~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~ 137 (200)
.+++..+. ..+.+.+.+++.|.. |.+.. ++...++.||++..+.
T Consensus 272 ~l~~P~~~~~~~~~~~~~~~~G~~---v~~~~-----d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 272 TLVSPPTLEMPAYIVEQISRNGHV---IEQTD-----DLAAGLRGADVVYATR 316 (429)
T ss_pred EEECCCccccCHHHHHHHHhcCCe---EEEEc-----CHHHHhCCCCEEEEcC
Confidence 99885332 124455556555542 44432 3444567899886543
No 287
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=44.83 E-value=65 Score=24.49 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccc----cc-EEEeCCCCCC-chHHHHHHH-cCCCeee
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL----AD-VCLDTPLCNG-HTTSMDVLW-TGTPVVT 157 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~----aD-v~l~~~~~~~-g~~~lEAma-~G~PVV~ 157 (200)
+.+++.++++|++ +.|.-.=...++..+++. +| +.++|--|+- +..+.+|++ .++|+|=
T Consensus 33 ~~~~~~a~~~g~~---~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VE 98 (146)
T PRK13015 33 ALCRAAAEALGLE---VEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIE 98 (146)
T ss_pred HHHHHHHHHcCCE---EEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEE
Confidence 3455666666765 555333223455555443 34 4567765653 678899986 7999993
No 288
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=44.37 E-value=2.4e+02 Score=25.79 Aligned_cols=72 Identities=18% Similarity=0.036 Sum_probs=50.2
Q ss_pred cEEEEEcCCc------ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH--cCCC
Q psy15362 83 SILWLLKFPA------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTP 154 (200)
Q Consensus 83 ~~l~ivG~~~------~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~P 154 (200)
-.+-|+|... .+..+++++++..|++ -+++|.+..+.+|+.. +..|++-+..+++ .|..+.|.|- .|+|
T Consensus 159 ~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~-vn~v~p~g~s~~di~~-l~~A~~nivl~~~-~g~~~A~~Lee~fGiP 235 (519)
T PRK02910 159 PSVNLLGPTALGFHHRDDLTELRRLLATLGID-VNVVAPLGASPADLKR-LPAAWFNVVLYRE-IGESAARYLEREFGQP 235 (519)
T ss_pred CeEEEEecCccCCCChhHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHh-cccCcEEEEeCHH-HHHHHHHHHHHHhCCc
Confidence 3577777521 2346899999999998 7777877777788875 5677777765553 3455556654 7999
Q ss_pred eee
Q psy15362 155 VVT 157 (200)
Q Consensus 155 VV~ 157 (200)
.+.
T Consensus 236 ~i~ 238 (519)
T PRK02910 236 YVK 238 (519)
T ss_pred ccc
Confidence 886
No 289
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=43.88 E-value=1.9e+02 Score=25.69 Aligned_cols=87 Identities=18% Similarity=0.083 Sum_probs=43.8
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccE
Q psy15362 53 AIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADV 132 (200)
Q Consensus 53 ~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv 132 (200)
.+.+.++|.. -+.++++++.+. ...+... +... .+..++ .++.|+. .+.|+- . + .+..+|+
T Consensus 9 ~v~viG~G~s------G~s~~a~~L~~~-G~~V~~~-D~~~-~~~~~~-l~~~gi~----~~~~~~-~-~---~~~~~d~ 69 (461)
T PRK00421 9 RIHFVGIGGI------GMSGLAEVLLNL-GYKVSGS-DLKE-SAVTQR-LLELGAI----IFIGHD-A-E---NIKDADV 69 (461)
T ss_pred EEEEEEEchh------hHHHHHHHHHhC-CCeEEEE-CCCC-ChHHHH-HHHCCCE----EeCCCC-H-H---HCCCCCE
Confidence 3555565532 234456666654 3444333 2222 223333 3455664 334653 2 2 2347898
Q ss_pred EEeCCCCCC-chHHHHHHHcCCCeeec
Q psy15362 133 CLDTPLCNG-HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 133 ~l~~~~~~~-g~~~lEAma~G~PVV~~ 158 (200)
++.+.-..- --.+.+|...|+||++.
T Consensus 70 vv~spgi~~~~~~~~~a~~~~i~i~~~ 96 (461)
T PRK00421 70 VVYSSAIPDDNPELVAARELGIPVVRR 96 (461)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEeH
Confidence 876653222 23466777778888763
No 290
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.82 E-value=1.2e+02 Score=21.72 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=23.9
Q ss_pred HHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc
Q psy15362 74 VNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG 127 (200)
Q Consensus 74 ~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~ 127 (200)
.++.++.++...+++|+..+ +...+..+++|++ . .|-+..+.+++..++
T Consensus 72 ~~L~~~~~~~i~i~~GG~~~--~~~~~~~~~~G~d--~-~~~~~~~~~~~~~~~ 120 (122)
T cd02071 72 ELLRELGAGDILVVGGGIIP--PEDYELLKEMGVA--E-IFGPGTSIEEIIDKI 120 (122)
T ss_pred HHHHhcCCCCCEEEEECCCC--HHHHHHHHHCCCC--E-EECCCCCHHHHHHHH
Confidence 33444445333344553222 2334556678985 3 344445556665543
No 291
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=43.69 E-value=1.4e+02 Score=26.33 Aligned_cols=74 Identities=20% Similarity=0.138 Sum_probs=46.9
Q ss_pred cEEEEEcCCc---ccHHHHHHHHHHcCCCCCcEEEe------------------ccCCHHHHHhhcccccEEEeCCCCCC
Q psy15362 83 SILWLLKFPA---VGEANIQATAQALGLDQHRILFS------------------NVAAKEEHVRRGQLADVCLDTPLCNG 141 (200)
Q Consensus 83 ~~l~ivG~~~---~~~~~l~~~~~~~gl~~~rv~f~------------------g~~~~~~~~~~~~~aDv~l~~~~~~~ 141 (200)
-++-++|... .+.+++++++++.|++ -++.|. |..+.+++.. +..|.+.+...++ .
T Consensus 156 ~~VNlig~~~~~~~d~~el~~lL~~~Gl~-v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~-~~~A~lniv~~~~-~ 232 (428)
T cd01965 156 GKVNLLPGFPLTPGDVREIKRILEAFGLE-PIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRD-AGNAKATIALGEY-S 232 (428)
T ss_pred CeEEEECCCCCCccCHHHHHHHHHHcCCC-EEEecCcccccCCCCCCCccccCCCCCcHHHHHH-hccCcEEEEEChh-h
Confidence 4566666422 2358899999999997 455542 4456677775 4566666654542 2
Q ss_pred chHHHHHHH--cCCCeeecC
Q psy15362 142 HTTSMDVLW--TGTPVVTLP 159 (200)
Q Consensus 142 g~~~lEAma--~G~PVV~~~ 159 (200)
|..+.+.|. .|+|-+..+
T Consensus 233 ~~~~a~~L~e~~GiP~~~~~ 252 (428)
T cd01965 233 GRKAAKALEEKFGVPYILFP 252 (428)
T ss_pred hHHHHHHHHHHHCCCeeecC
Confidence 345555554 899998654
No 292
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=43.08 E-value=1.6e+02 Score=23.08 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCcc----cHHHHHHHHHHcCCCCCcEEEe-ccCCHHHHHhhcccccEEEeCC----C----C--CCc-hH
Q psy15362 81 PNSILWLLKFPAV----GEANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTP----L----C--NGH-TT 144 (200)
Q Consensus 81 p~~~l~ivG~~~~----~~~~l~~~~~~~gl~~~rv~f~-g~~~~~~~~~~~~~aDv~l~~~----~----~--~~g-~~ 144 (200)
++.+++++..... ..+.+++..+++|.. ...... ...+.++....+..||++..+- . + ... -.
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~-~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~ 106 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVE-VVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDA 106 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCc-eEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHH
Confidence 5778888875321 124566778888886 332222 2223467777888999987552 1 1 112 35
Q ss_pred HHHHHHcCCCeee-cCCCcc
Q psy15362 145 SMDVLWTGTPVVT-LPGETL 163 (200)
Q Consensus 145 ~lEAma~G~PVV~-~~g~~~ 163 (200)
+.+..+.|+|++. +.|...
T Consensus 107 i~~~~~~G~v~~G~SAGA~~ 126 (210)
T cd03129 107 ILKRVARGVVIGGTSAGAAV 126 (210)
T ss_pred HHHHHHcCCeEEEcCHHHHH
Confidence 7888888999996 455443
No 293
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=43.02 E-value=85 Score=25.83 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEEcCCc---ccH----------HHHHHHHHHcCCCCCcEEEeccC
Q psy15362 68 STLQMWVNVLKAVPNSILWLLKFPA---VGE----------ANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 68 ~~l~a~~~i~~~~p~~~l~ivG~~~---~~~----------~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
..++.++.+++..|+.++.|.|+.. ... ..++++..+.|++++|+...|+=
T Consensus 152 ~~L~~iA~~Lk~~p~~~V~I~GHTD~~Gs~~~N~~LS~~RA~aV~~yLv~~GI~~~RI~~~G~G 215 (239)
T TIGR03789 152 PQLDEVATLMKQSPELKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARLTTQAFG 215 (239)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 4567777888899999999999632 111 23455666779988999988764
No 294
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=42.99 E-value=2.2e+02 Score=24.70 Aligned_cols=41 Identities=7% Similarity=-0.050 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCC
Q psy15362 65 IDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLD 108 (200)
Q Consensus 65 ~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~ 108 (200)
+.-.-..++....++ ++. ++.+|..+...-++.+++++ ++.
T Consensus 241 g~TRs~~a~~~~~~~-~~~-i~viGnAPTAL~~l~~li~~-~~~ 281 (335)
T PRK05782 241 GITRAAAAMRLSLGQ-GGK-VVVIGNAPTALIETLKLVKE-GVD 281 (335)
T ss_pred CCcHHHHHHHHHHhc-CCC-EEEEeCcHHHHHHHHHHHhc-CCC
Confidence 333344455555544 666 55667532233455566666 655
No 295
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=42.81 E-value=1.4e+02 Score=24.24 Aligned_cols=84 Identities=10% Similarity=-0.001 Sum_probs=49.7
Q ss_pred hhhhhhh-cCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccC
Q psy15362 40 VITSRQQ-YGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 40 ~~~~R~~-l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
...+|+. -.+|-|.-+ .+ .+...+++.++ +..++...+=+ +....-.+.-+.++++|+. -=+.+-+..
T Consensus 53 i~~lr~~~~~~~~dvHL--Mv----~~P~~~i~~~~---~~gad~I~~H~-Ea~~~~~~~l~~Ir~~g~k-~GlalnP~T 121 (223)
T PRK08745 53 CQALRKHGITAPIDVHL--MV----EPVDRIVPDFA---DAGATTISFHP-EASRHVHRTIQLIKSHGCQ-AGLVLNPAT 121 (223)
T ss_pred HHHHHhhCCCCCEEEEe--cc----CCHHHHHHHHH---HhCCCEEEEcc-cCcccHHHHHHHHHHCCCc-eeEEeCCCC
Confidence 3566654 245533222 11 23445555555 33444322222 1112234566789999997 678888888
Q ss_pred CHHHHHhhcccccEEE
Q psy15362 119 AKEEHVRRGQLADVCL 134 (200)
Q Consensus 119 ~~~~~~~~~~~aDv~l 134 (200)
|.+.+..++..+|.++
T Consensus 122 ~~~~i~~~l~~vD~Vl 137 (223)
T PRK08745 122 PVDILDWVLPELDLVL 137 (223)
T ss_pred CHHHHHHHHhhcCEEE
Confidence 8888988999999885
No 296
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=42.62 E-value=1.1e+02 Score=20.77 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCccc---H----------HHHHHHHHHcCCCCCcEEEeccC
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPAVG---E----------ANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~~~---~----------~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
...++.+...++..|+.++.+.|...+. . ..+++.+.+.|+..+++...|+-
T Consensus 18 ~~~l~~~~~~l~~~~~~~v~v~g~a~~~g~~~~n~~Ls~~RA~~v~~~L~~~g~~~~~i~~~~~G 82 (106)
T cd07185 18 KPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82 (106)
T ss_pred HHHHHHHHHHHHHCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEeC
Confidence 3556777778888999899999953211 1 23455666778776788777665
No 297
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=42.59 E-value=1.8e+02 Score=25.30 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=34.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccC----CHHHHH----hhcccccEEEeC
Q psy15362 80 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA----AKEEHV----RRGQLADVCLDT 136 (200)
Q Consensus 80 ~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~----~~~~~~----~~~~~aDv~l~~ 136 (200)
..+.+++++|.| ..-+..-+...+.|+ .+|.+..+. +.++.. .+.+.+||.+..
T Consensus 172 l~~k~vLvIGaG-em~~l~a~~L~~~g~--~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 172 SKKASLLFIGYS-EINRKVAYYLQRQGY--SRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFG 233 (338)
T ss_pred ccCCEEEEEccc-HHHHHHHHHHHHcCC--CEEEEEcCCccccchhhhhhhhhhcccCCCEEEEc
Confidence 346799999974 333333444455677 567777765 344433 556789999864
No 298
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.10 E-value=2.7e+02 Score=25.40 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=49.5
Q ss_pred EEEEEcCCc------ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHH--HcCCCe
Q psy15362 84 ILWLLKFPA------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPV 155 (200)
Q Consensus 84 ~l~ivG~~~------~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAm--a~G~PV 155 (200)
.+-|+|... .+..+++++++.+|+. -+++|.+..+.+++.. +..|++-|..+++ .|..+.+.| -+|+|.
T Consensus 160 ~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~-vn~v~p~g~s~~dl~~-l~~A~~NIv~~~~-~g~~~A~~Le~~fGiP~ 236 (511)
T TIGR01278 160 SVNLLGPASLGFHHRHDLIELRRLLKTLGIE-VNVVAPWGASIADLAR-LPAAWLNICPYRE-IGLMAAEYLKEKFGQPY 236 (511)
T ss_pred cEEEEeCCCCCCCCHHHHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHh-cccCcEEEEechH-HHHHHHHHHHHHhCCCc
Confidence 466777421 1346899999999997 6677777677788775 5778888776653 344555555 479999
Q ss_pred ee
Q psy15362 156 VT 157 (200)
Q Consensus 156 V~ 157 (200)
+.
T Consensus 237 i~ 238 (511)
T TIGR01278 237 IT 238 (511)
T ss_pred cc
Confidence 85
No 299
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=41.99 E-value=1.1e+02 Score=26.39 Aligned_cols=48 Identities=6% Similarity=-0.092 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHC---CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEec
Q psy15362 64 KIDPSTLQMWVNVLKAV---PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSN 116 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~---p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g 116 (200)
......++.....++++ |+..++++|+ ++.+++.+++++.. +|+.+..
T Consensus 14 ~~P~~~v~ga~~al~~~~~~~~~~i~LvG~----~~~i~~~l~~~~~~-~ri~iv~ 64 (316)
T PRK13846 14 HSPLVVWEVLGDVLLSSSSEQPVEFTVFAS----SEVHHQILSNSPLS-RSPRIIT 64 (316)
T ss_pred cChHHHHHHHHHHHHhcCCCCCeEEEEEeC----HHHHHHHHHhCCCc-CceEEEe
Confidence 44567788888888888 8899999985 36677767665543 5666654
No 300
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=41.98 E-value=1.5e+02 Score=26.22 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=49.9
Q ss_pred EEEEEcCCc-------ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHH--HcCCC
Q psy15362 84 ILWLLKFPA-------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTP 154 (200)
Q Consensus 84 ~l~ivG~~~-------~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAm--a~G~P 154 (200)
.+-|+|... .+..++++++++.|+. -+.+|.|..+.+++.. +..|.+.+..+++ .|..+.+.| -.|+|
T Consensus 163 ~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~-v~~~~~~~~~~~ei~~-~~~A~lniv~~~~-~g~~~a~~Lee~~GiP 239 (426)
T cd01972 163 SVNIIGLWGGPERTEQEDVDEFKRLLNELGLR-VNAIIAGGCSVEELER-ASEAAANVTLCLD-LGYYLGAALEQRFGVP 239 (426)
T ss_pred CEEEEccCCCccccccccHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHh-cccCCEEEEEChh-HHHHHHHHHHHHhCCC
Confidence 466777532 1237899999999997 7778888777788876 5566666554432 345666666 48999
Q ss_pred eeec
Q psy15362 155 VVTL 158 (200)
Q Consensus 155 VV~~ 158 (200)
.+..
T Consensus 240 ~~~~ 243 (426)
T cd01972 240 EIKA 243 (426)
T ss_pred eEec
Confidence 9964
No 301
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=41.87 E-value=1.9e+02 Score=23.46 Aligned_cols=39 Identities=5% Similarity=-0.028 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCC
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLD 108 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~ 108 (200)
-..++....++ ++..++.+|..+...-++.+++++.++.
T Consensus 120 saaam~~a~~~-~~~~IvvIGNAPTAL~~l~~li~~g~~~ 158 (214)
T PRK08286 120 SMAAVDIAAAE-EGPKLFVFGNAPTALFRLLEMVEHGQLQ 158 (214)
T ss_pred HHHHHHHHHhc-cCCcEEEEeCcHHHHHHHHHHHHcCCCC
Confidence 33444444444 5555667775333344556666665554
No 302
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=41.80 E-value=56 Score=24.02 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcCCcc---cHHHHHHHHHHcCCC
Q psy15362 64 KIDPSTLQMWVNVLKAVPNSILWLLKFPAV---GEANIQATAQALGLD 108 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~---~~~~l~~~~~~~gl~ 108 (200)
+..+..-+.|.++++..|+..++++|.+.. -...++..+++.|+.
T Consensus 51 ~~~~Lt~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIs 98 (127)
T COG3737 51 TLSDLTPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGIS 98 (127)
T ss_pred ChhhCCHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCc
Confidence 444556788899999999999999997432 136788888888886
No 303
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=41.54 E-value=77 Score=18.92 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=39.6
Q ss_pred cEEEEEcCC-cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeee
Q psy15362 83 SILWLLKFP-AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 83 ~~l~ivG~~-~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~ 157 (200)
..+.+.|.. +..+..+++++.++|-. +. ...+ ..++.++.+..... .....|...|+|+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~---v~--~~~~--------~~~thvI~~~~~~~-~~~~~~~~~~~~iV~ 63 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK---VT--SSVS--------KKTTHVIVGSDAGP-KKLLKAIKLGIPIVT 63 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE---Ee--cccc--------CCceEEEECCCCCc-hHHHHHHHcCCeEec
Confidence 457777764 46678999999998853 22 2221 35566665543222 227889999999997
No 304
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=41.48 E-value=85 Score=19.37 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=36.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeee
Q psy15362 84 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 84 ~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~ 157 (200)
++.+-|..+.++..+++++..+|- .+.+.+. +....++.. ...|...-.|...|+|||.
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg-----~~~~~lt--------~~~THLI~~--~~~~~K~~~A~~~gi~vV~ 60 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGG-----KYSKDLT--------KKTTHLICS--SPEGKKYRKAKEWGIPVVS 60 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT------EEESSSS--------TT-SEEEEE--S--HHHHHHHHHCTSEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHCCC-----EEecccc--------CCceEEEEe--CCCcHHHHHHHHCCCcEEC
Confidence 344556544567889999999885 3444442 244555542 2346778889999999997
No 305
>KOG1050|consensus
Probab=41.40 E-value=92 Score=30.00 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=77.6
Q ss_pred ecccccccccCCCCCCCCCCCchhhhhhhhhcCCCCCCEEEEEeCCC--CCCCHHHHHHHHHHHHHCCC----cEEEEEc
Q psy15362 16 LQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQL--YKIDPSTLQMWVNVLKAVPN----SILWLLK 89 (200)
Q Consensus 16 i~ng~~~~~~~~~~~~~~~~~~~~~~~~R~~l~l~~~~~v~~~~~r~--~K~~~~~l~a~~~i~~~~p~----~~l~ivG 89 (200)
+|=|+|...|......++ -......++..+ .+..++.++-|. .|+...=+.++.+.+.++|. +.++.+.
T Consensus 244 ~pigid~~r~v~~~~~~~--~~~~~~ei~~~~---~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~ 318 (732)
T KOG1050|consen 244 LPIGIDVQRFVKLLELPY--VGSKGMEIKEPF---KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIE 318 (732)
T ss_pred cccccchHHhhccccchh--HHHHHHHHhhhc---cCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEe
Confidence 455666666544322110 111223444444 466777777775 46777778889999888874 5555555
Q ss_pred CCc--ccH--HHHHHHH-------H-HcCCC-CCcEEE-eccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcC
Q psy15362 90 FPA--VGE--ANIQATA-------Q-ALGLD-QHRILF-SNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTG 152 (200)
Q Consensus 90 ~~~--~~~--~~l~~~~-------~-~~gl~-~~rv~f-~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G 152 (200)
.+. +.. ++++..+ . +.|-. ...|++ .-.+|..++.++|..+|+.+.++...| .++.+|...|.
T Consensus 319 ~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~ 396 (732)
T KOG1050|consen 319 NPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQ 396 (732)
T ss_pred cCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhh
Confidence 321 121 1222221 1 11211 134544 556788999999999999988776555 67888888764
No 306
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.37 E-value=97 Score=27.91 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHH---HHHHHHHcCCCCCcEEEeccCCHHH
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEAN---IQATAQALGLDQHRILFSNVAAKEE 122 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~---l~~~~~~~gl~~~rv~f~g~~~~~~ 122 (200)
+.+++.+.++.+..||+.+ +|||.++..++. ..+++++.+. ++++..-|-|++-
T Consensus 280 e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~f--d~~~~F~YSpRpG 339 (437)
T COG0621 280 EEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRF--DRLHVFKYSPRPG 339 (437)
T ss_pred HHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCC--CEEeeeecCCCCC
Confidence 5677888888899999766 688987655444 4467888777 6777776666543
No 307
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=41.14 E-value=67 Score=24.11 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCC-CcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccC-----CHHHHH----hhccc--ccEEEe
Q psy15362 68 STLQMWVNVLKAVP-NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-----AKEEHV----RRGQL--ADVCLD 135 (200)
Q Consensus 68 ~~l~a~~~i~~~~p-~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~-----~~~~~~----~~~~~--aDv~l~ 135 (200)
+++.+..++.++.. ....+++|......+.+++.+..+|. |+|+....- ..+.+. .+++. .|+++.
T Consensus 19 e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~--d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~ 96 (164)
T PF01012_consen 19 EALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGA--DKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLF 96 (164)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTE--SEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCC--cEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45555566665442 46677787422345678888887888 677775432 112222 22333 788887
Q ss_pred CCCCCC-chHHHHHHHcCCCeeec
Q psy15362 136 TPLCNG-HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 136 ~~~~~~-g~~~lEAma~G~PVV~~ 158 (200)
+....+ .+...=|-..|.|+++.
T Consensus 97 ~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 97 GSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp ESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred cCcCCCCcHHHHHHHHhCCCccce
Confidence 654333 46666677788999874
No 308
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=41.08 E-value=2.1e+02 Score=23.86 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH-cCCCeeecCCCc
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGET 162 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~~ 162 (200)
..|++.-++.|+. +.+.-...++.......+|++=.+...-.-..+++|.+ .|+||....|..
T Consensus 63 ~iL~~vk~~~glp----vvTeV~~~~~~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~ 126 (258)
T TIGR01362 63 KILQKVKEEFGVP----ILTDVHESSQCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQF 126 (258)
T ss_pred HHHHHHHHHhCCc----eEEEeCCHHHHHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCc
Confidence 4566777788986 55666666666666677999965654334466777777 899999988854
No 309
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=40.49 E-value=52 Score=22.88 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=31.4
Q ss_pred EEEEEcCCccc-----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCC
Q psy15362 84 ILWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP 137 (200)
Q Consensus 84 ~l~ivG~~~~~-----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~ 137 (200)
+++.+++.|.. +..+++.++++|++ -.+.- ....++......+|+++.+-
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~-~~~~~---~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGID-VDVEQ---CAVDEIKALTDGADIIVTST 57 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCC-ceeee---EEecccccCCCcccEEEEeh
Confidence 45565544433 46788999999995 22221 11245566678899999764
No 310
>KOG2648|consensus
Probab=40.12 E-value=60 Score=29.23 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=50.4
Q ss_pred cEEEEEcCCcc-----cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEe-CCCC-----C----Cc-hHHH
Q psy15362 83 SILWLLKFPAV-----GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLC-----N----GH-TTSM 146 (200)
Q Consensus 83 ~~l~ivG~~~~-----~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~-~~~~-----~----~g-~~~l 146 (200)
..=+|+|.=|. --++|+++++..|.. ..++.+|++....+. .+...|+||. ..|+ + .+ ++..
T Consensus 268 ~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk-~y~l~~g~inPaKLA-nF~eIDvfV~iaCp~lsid~s~~F~kPiltPf 345 (453)
T KOG2648|consen 268 TIGLIVGTLGRQGNREVLEHLRKLLKAAGKK-SYVLALGEINPAKLA-NFPEIDVFVQIACPRLSIDWSKEFYKPLLTPF 345 (453)
T ss_pred eEEEEEecccccCCHHHHHHHHHHHHHcCCc-eEEEEecCCCHHHhc-CCccccEEEEEeCcccchhhhhhhccccccHH
Confidence 44456774221 135788999999998 899999999876654 5777999973 2121 1 12 4677
Q ss_pred HHHHcCCCeeecCCC
Q psy15362 147 DVLWTGTPVVTLPGE 161 (200)
Q Consensus 147 EAma~G~PVV~~~g~ 161 (200)
||-.+.-|. +..++
T Consensus 346 Ea~~Al~~~-~W~~~ 359 (453)
T KOG2648|consen 346 EAEVALNPI-AWTGD 359 (453)
T ss_pred HHHHhcCcc-ccCCc
Confidence 877777776 55443
No 311
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=39.98 E-value=1.7e+02 Score=22.48 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=32.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHcC--CCCCcEEEeccCCHHHHHhhcccccEEEeCCCCC
Q psy15362 82 NSILWLLKFPAVGEANIQATAQALG--LDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN 140 (200)
Q Consensus 82 ~~~l~ivG~~~~~~~~l~~~~~~~g--l~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~ 140 (200)
..++.+++.. .++.+++++.++ .. .++......+.+++...++.+|+++.+.+.+
T Consensus 52 g~~V~l~~R~---~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 52 GARVVLVGRD---LERAQKAADSLRARFG-EGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CCEEEEEcCC---HHHHHHHHHHHHhhcC-CcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 3577777532 344555444332 12 3355554555677777888999999877644
No 312
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=39.51 E-value=1.1e+02 Score=20.18 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=35.6
Q ss_pred EEEEcCCccc-----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeee
Q psy15362 85 LWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 85 l~ivG~~~~~-----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~ 157 (200)
.+++++.|.. ...+++.++++|++ -.+.-......++ ....+|+++.+..... --+.-..++|+..
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~~~~~~~---~~~~~D~il~~~~i~~---~~~~~~~~~pv~~ 72 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGSILEVEE---IADDADLILLTPQIAY---EDLKEFAGKPVPV 72 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEETTTHHH---HHTT-SEEEEEESSGG---HHHHHHTTSBEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEeccccccc---ccCCCcEEEEcCccch---hhhhhhcCCeEEE
Confidence 4555544432 36788999999986 4444333222233 3467999987654221 1223334566544
No 313
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=39.49 E-value=58 Score=28.25 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=22.2
Q ss_pred HHHHHHHCCCcEEEEEcCCcccH-HHHHHHHHH
Q psy15362 73 WVNVLKAVPNSILWLLKFPAVGE-ANIQATAQA 104 (200)
Q Consensus 73 ~~~i~~~~p~~~l~ivG~~~~~~-~~l~~~~~~ 104 (200)
+..+++++||.+++++|+.|.-. +-+-+.+++
T Consensus 268 l~nil~~~p~~kfvLVGDsGE~DpeIYae~v~~ 300 (373)
T COG4850 268 LRNILRRYPDRKFVLVGDSGEHDPEIYAEMVRC 300 (373)
T ss_pred HHHHHHhCCCceEEEecCCCCcCHHHHHHHHHh
Confidence 34577889999999999866433 344555655
No 314
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=39.41 E-value=24 Score=29.89 Aligned_cols=82 Identities=12% Similarity=-0.018 Sum_probs=42.7
Q ss_pred HHHHHHHHC-CCcEEEEEcCCc-cc----HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCC-CCCCchH
Q psy15362 72 MWVNVLKAV-PNSILWLLKFPA-VG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTT 144 (200)
Q Consensus 72 a~~~i~~~~-p~~~l~ivG~~~-~~----~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~-~~~~g~~ 144 (200)
-+..|.+.. -+..-+++|.-+ .. .++++++++++|.. -.+++.|.++.+.+.. +...|+||..+ |. ++
T Consensus 199 R~~~i~ka~~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk-~y~~~~~~i~~~kL~n-f~eid~fV~~aCPr---~~ 273 (307)
T PF01866_consen 199 RYALIEKAKDAKTFGIIVGTLGGQGYLELIKRLKKLLKKAGKK-SYTLSVGEINPAKLAN-FPEIDAFVQIACPR---LS 273 (307)
T ss_dssp HHHHHHHHTT--EEEEEEE-STTT--HHHHHHHHHHHHHTT-E-EEEEEESS--GGGGTT-S---SEEEE-S-TH---HH
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCHHHHHHHHHHHHHcCCE-EEEEEECCCCHHHHhc-CcccCEEEEecCCC---cc
Confidence 334443332 234556677421 11 25788999999997 8888999998765544 56799998653 32 55
Q ss_pred HHHHHHcCCCeeec
Q psy15362 145 SMDVLWTGTPVVTL 158 (200)
Q Consensus 145 ~lEAma~G~PVV~~ 158 (200)
+.+.--.-+|||+.
T Consensus 274 idd~~~f~kPvltP 287 (307)
T PF01866_consen 274 IDDSKDFYKPVLTP 287 (307)
T ss_dssp HT--S--SS-EE-H
T ss_pred cCchhhcCCcccCH
Confidence 66777788899874
No 315
>PRK08005 epimerase; Validated
Probab=39.38 E-value=1.8e+02 Score=23.41 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEe
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 135 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~ 135 (200)
.+.-+.++++|.. -=+-+-+..|.+.+..++...|.++.
T Consensus 96 ~~~l~~Ik~~G~k-~GlAlnP~Tp~~~i~~~l~~vD~Vlv 134 (210)
T PRK08005 96 SEILADIRAIGAK-AGLALNPATPLLPYRYLALQLDALMI 134 (210)
T ss_pred HHHHHHHHHcCCc-EEEEECCCCCHHHHHHHHHhcCEEEE
Confidence 4566788999987 66777777888888888899998853
No 316
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=39.37 E-value=1.4e+02 Score=21.38 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=29.1
Q ss_pred EEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCC
Q psy15362 112 ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 161 (200)
Q Consensus 112 v~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~ 161 (200)
|.+....+.+++...+..+|+++..+.....-.+++++ -++-+|...|.
T Consensus 21 v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~ 69 (133)
T PF00389_consen 21 VEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGA 69 (133)
T ss_dssp EEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSS
T ss_pred EEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEccc
Confidence 66666666677777777777777543221234566666 66777765543
No 317
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=39.29 E-value=2e+02 Score=23.13 Aligned_cols=44 Identities=5% Similarity=-0.170 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCC
Q psy15362 64 KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLD 108 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~ 108 (200)
++.-.-..++....++.++. ++.+|..+...-++.+++++.++.
T Consensus 110 ~g~TRs~aam~~a~~~~~~~-I~vIGNAPTAL~~l~~li~~g~~~ 153 (208)
T PRK08285 110 LGNTRSAAALELWRPRLAGS-VVAIGNAPTALFRLLEMLDAGAPR 153 (208)
T ss_pred cCCCHHHHHHHHHHHHCCCC-EEEEeCCHHHHHHHHHHHHcCCCC
Confidence 34334445555555666777 667775433344566677765555
No 318
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=39.23 E-value=83 Score=23.43 Aligned_cols=94 Identities=20% Similarity=0.129 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCCCCcEEEeccC---CHHHHHhhccc---ccEE---EeCCCCCCchHHHHHH---HcCCCeeec-CCCc
Q psy15362 96 ANIQATAQALGLDQHRILFSNVA---AKEEHVRRGQL---ADVC---LDTPLCNGHTTSMDVL---WTGTPVVTL-PGET 162 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~---~~~~~~~~~~~---aDv~---l~~~~~~~g~~~lEAm---a~G~PVV~~-~g~~ 162 (200)
..+-..+.+.|+.-.+++=+|.- ...|+..++.. ..+. +.+.. .|..++|++ +.-+|||+. .|.+
T Consensus 15 ~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~--d~~~f~~~~~~a~~~KPVv~lk~Grt 92 (138)
T PF13607_consen 15 TAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIG--DGRRFLEAARRAARRKPVVVLKAGRT 92 (138)
T ss_dssp HHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S---HHHHHHHHHHHCCCS-EEEEE----
T ss_pred HHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCC--CHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 44556666666654666667763 34666666533 2222 33222 233444433 333999986 3432
Q ss_pred chh------h---------hHHHHHhhcCCCcceecCHHHHHHHHH
Q psy15362 163 LAS------R---------VAASQLATLGCPELIARTHKEYQDIAI 193 (200)
Q Consensus 163 ~~~------r---------~~~~~~~~~g~~~~ia~~~~~yv~~a~ 193 (200)
-.+ + .-.+.++..|+ +.+++.+++.+.+.
T Consensus 93 ~~g~~aa~sHTgslag~~~~~~a~~~~aGv--~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 93 EAGARAAASHTGSLAGDDAVYDAALRQAGV--VRVDDLDELLDAAK 136 (138)
T ss_dssp -----------------HHHHHHHHHHCTE--EEESSHHHHHHHHC
T ss_pred hhhhhhhhccCCcccCcHHHHHHHHHHcCc--eEECCHHHHHHHHH
Confidence 211 1 12355666666 77889998887663
No 319
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.11 E-value=1.8e+02 Score=23.55 Aligned_cols=62 Identities=8% Similarity=-0.064 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhc-ccccEE-EeCCCCCCchHHHHHHHc---CCCeeecCCC
Q psy15362 95 EANIQATAQALGLDQHRILFSNVAAKEEHVRRG-QLADVC-LDTPLCNGHTTSMDVLWT---GTPVVTLPGE 161 (200)
Q Consensus 95 ~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~-~~aDv~-l~~~~~~~g~~~lEAma~---G~PVV~~~g~ 161 (200)
.+.+-+.++++++. .+-|-....|+...+ ..+|++ +.|.. .+|...+-++.. ++|++.+.|-
T Consensus 101 ~~~v~~~~~~~~i~----~iPG~~TpsEi~~A~~~Ga~~vKlFPA~-~~G~~~ikal~~p~p~i~~~ptGGV 167 (222)
T PRK07114 101 NPDIAKVCNRRKVP----YSPGCGSLSEIGYAEELGCEIVKLFPGS-VYGPGFVKAIKGPMPWTKIMPTGGV 167 (222)
T ss_pred CHHHHHHHHHcCCC----EeCCCCCHHHHHHHHHCCCCEEEECccc-ccCHHHHHHHhccCCCCeEEeCCCC
Confidence 34566667776664 667776666665544 346766 55533 345666666653 4446666554
No 320
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=39.10 E-value=2.2e+02 Score=23.47 Aligned_cols=92 Identities=17% Similarity=0.078 Sum_probs=56.9
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEE
Q psy15362 54 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC 133 (200)
Q Consensus 54 ~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~ 133 (200)
+++|+.|...-+.+.+++++.+-+ .|+.+++++.. .+. +. .+.+|+. ...+.+..++...+..+|++
T Consensus 2 ~l~GyyG~~N~GDe~~l~~~l~~l--~~~~~~~v~s~-~p~--~~---~~~~~v~-----~~~r~~~~~~~~~l~~~D~v 68 (298)
T TIGR03609 2 LLCGYYGFGNLGDEALLAALLREL--PPGVEPTVLSN-DPA--ET---AKLYGVE-----AVNRRSLLAVLRALRRADVV 68 (298)
T ss_pred EEEEecCCCCcchHHHHHHHHHhc--CCCCeEEEecC-ChH--HH---HhhcCce-----EEccCCHHHHHHHHHHCCEE
Confidence 467888877778777888774322 47888888864 232 22 2333553 33455556777788899999
Q ss_pred EeCC--CCC---Cch-------HHHHHHHcCCCeeec
Q psy15362 134 LDTP--LCN---GHT-------TSMDVLWTGTPVVTL 158 (200)
Q Consensus 134 l~~~--~~~---~g~-------~~lEAma~G~PVV~~ 158 (200)
+... .+. +.. ...-|..+|+|++..
T Consensus 69 I~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~ 105 (298)
T TIGR03609 69 IWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILW 105 (298)
T ss_pred EECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEE
Confidence 8552 111 111 234566789999975
No 321
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.61 E-value=1.2e+02 Score=27.83 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHHH---HHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANIQ---ATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l~---~~~~~~gl~~~rv~f~g~~~ 119 (200)
+.+++++.++.+..|++.+ +|+|.++...+.++ +++++.+. +++++..+.|
T Consensus 347 e~~~~~v~~lr~~~p~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~~--d~~~~f~ysp 403 (509)
T PRK14327 347 ESYLELVRKIKEAIPNVALTTDIIVGFPNETDEQFEETLSLYREVGF--DHAYTFIYSP 403 (509)
T ss_pred HHHHHHHHHHHHhCCCcEEeeeEEEeCCCCCHHHHHHHHHHHHHcCC--CeEEEeeeeC
Confidence 5788888999888999876 78897665555444 46777776 5666655443
No 322
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=38.34 E-value=2.5e+02 Score=23.89 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=40.4
Q ss_pred hhhhhcCCCCCCEEEEEeCCC---CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc-cHHHHHHHHH
Q psy15362 42 TSRQQYGLPEDAIVYCNFNQL---YKIDPSTLQMWVNVLKAVPNSILWLLKFPAV-GEANIQATAQ 103 (200)
Q Consensus 42 ~~R~~l~l~~~~~v~~~~~r~---~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~-~~~~l~~~~~ 103 (200)
..-+.+||. .+++-++.|- .-+-..|.+.+.+|.+..|+..+-+.-..-. ....++..++
T Consensus 107 eaV~~mgLk--yVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~ 170 (306)
T COG0320 107 EAVKDMGLK--YVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVAD 170 (306)
T ss_pred HHHHHhCCC--eEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHh
Confidence 344567774 6888899884 3556778899999999999988877642111 2344554444
No 323
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=37.77 E-value=63 Score=27.71 Aligned_cols=36 Identities=14% Similarity=-0.005 Sum_probs=21.6
Q ss_pred hcccccEEEeCCCCCCchHHHH-HHHcCCCeeecCCC
Q psy15362 126 RGQLADVCLDTPLCNGHTTSMD-VLWTGTPVVTLPGE 161 (200)
Q Consensus 126 ~~~~aDv~l~~~~~~~g~~~lE-Ama~G~PVV~~~g~ 161 (200)
+...+|+.+...|.+-.....+ +...|+.||=..++
T Consensus 46 ~~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSad 82 (310)
T TIGR01851 46 LLNAADVAILCLPDDAAREAVSLVDNPNTCIIDASTA 82 (310)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChH
Confidence 3457888777666554333333 44678888865544
No 324
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=37.55 E-value=1.2e+02 Score=20.16 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=32.3
Q ss_pred HHHHHHHHHHH--HCCCcEEEEEcCCcc---cH----------HHHHHHHHHcCCCCCcEEEeccC
Q psy15362 68 STLQMWVNVLK--AVPNSILWLLKFPAV---GE----------ANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 68 ~~l~a~~~i~~--~~p~~~l~ivG~~~~---~~----------~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
..|+.++++++ ..++ ++.|.|.... .. ..+++.+...|++++|+...|+-
T Consensus 15 ~~L~~l~~~l~~~~~~~-~i~I~G~td~~g~~~~n~~LS~~RA~~V~~~L~~~gi~~~ri~~~~~G 79 (97)
T PF00691_consen 15 EQLDELAKILKYPGNKD-QIEIEGHTDSTGSAEYNQELSQRRAEAVKQYLVENGIPPERISVVGYG 79 (97)
T ss_dssp HHHHHHHHHHHSTTSTT-EEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEEET
T ss_pred HHHHHHHHHHhCcCCCC-eEEEEEEEcCcchhhHHhHHHHHHHHHHHHHHHHcCCChHhEEEEEEc
Confidence 45566667776 4556 7999996321 10 23455666689988999887764
No 325
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.46 E-value=1.2e+02 Score=26.96 Aligned_cols=51 Identities=10% Similarity=0.225 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHHH---HHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANIQ---ATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l~---~~~~~~gl~~~rv~f~g~~~ 119 (200)
+.+.+++..+.+..|+..+ +|+|.++...+.++ +++++++. +++++..+.|
T Consensus 280 ~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~tl~~l~~l~~--~~i~~f~~sp 336 (437)
T PRK14331 280 EEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEETLDVLKKVEF--EQVFSFKYSP 336 (437)
T ss_pred HHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHHHHHHHHhcCc--ceeeeeEecC
Confidence 5678888888888788876 78897665555444 56777776 5666555544
No 326
>KOG3742|consensus
Probab=37.31 E-value=11 Score=34.15 Aligned_cols=38 Identities=13% Similarity=0.005 Sum_probs=31.8
Q ss_pred HHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecC
Q psy15362 122 EHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 122 ~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~ 159 (200)
|+-.+.+.|.+-|.||.|+- |.+..|.--||+|-|+++
T Consensus 493 DYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTN 531 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTN 531 (692)
T ss_pred CHHHHhccccccccccccCCCCCCchheEEecccccccc
Confidence 33444579999999998874 999999999999999975
No 327
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=37.00 E-value=1.8e+02 Score=23.66 Aligned_cols=40 Identities=10% Similarity=0.012 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeC
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT 136 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~ 136 (200)
.+.-+.++++|.. -=+.+-+..|.+.+..++..+|..+.-
T Consensus 98 ~~~i~~Ik~~G~k-aGlalnP~T~~~~l~~~l~~vD~VLvM 137 (229)
T PRK09722 98 FRLIDEIRRAGMK-VGLVLNPETPVESIKYYIHLLDKITVM 137 (229)
T ss_pred HHHHHHHHHcCCC-EEEEeCCCCCHHHHHHHHHhcCEEEEE
Confidence 3455788999987 678888888888888899999988543
No 328
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.94 E-value=28 Score=30.07 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=44.0
Q ss_pred HHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhh--hHHHHHhhcCCCcceecCHHHHHHHHHH-hh
Q psy15362 120 KEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASR--VAASQLATLGCPELIARTHKEYQDIAIR-LG 196 (200)
Q Consensus 120 ~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r--~~~~~~~~~g~~~~ia~~~~~yv~~a~~-l~ 196 (200)
.+.+..+++.+|+.+-. .|+..=.+.-.|+|||..+|....-. .....-+-+|..-.....+..-...+.+ +.
T Consensus 302 qqsfadiLH~adaalgm----AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll 377 (412)
T COG4370 302 QQSFADILHAADAALGM----AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELL 377 (412)
T ss_pred HHHHHHHHHHHHHHHHh----ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHh
Confidence 35666677888886532 36778889999999999877532111 1111122345544444444444444444 66
Q ss_pred cCCC
Q psy15362 197 TDRD 200 (200)
Q Consensus 197 ~d~e 200 (200)
.||+
T Consensus 378 ~dp~ 381 (412)
T COG4370 378 GDPQ 381 (412)
T ss_pred cChH
Confidence 6653
No 329
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=36.94 E-value=2.3e+02 Score=25.53 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccC--------C--HHHHHhh------------
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA--------A--KEEHVRR------------ 126 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~--------~--~~~~~~~------------ 126 (200)
++.++.-.-++..+.++++.|.| ..-=.+-+++..+|+.+++|+...+. + ..+....
T Consensus 186 llnalk~~gk~l~d~kiv~~GAG-AAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~~ 264 (432)
T COG0281 186 LLNALKLTGKKLKDQKIVINGAG-AAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTLD 264 (432)
T ss_pred HHHHHHHhCCCccceEEEEeCCc-HHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhcccccc
Confidence 44444444455678999999864 33334667777888876677766542 1 1112222
Q ss_pred --cccccEEEeCCCCCC-chHHHHHHHcCCCeee
Q psy15362 127 --GQLADVCLDTPLCNG-HTTSMDVLWTGTPVVT 157 (200)
Q Consensus 127 --~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~ 157 (200)
+..+|+|+-.|.-+- .--.++.|+.- |+|-
T Consensus 265 ~~~~~adv~iG~S~~G~~t~e~V~~Ma~~-PiIf 297 (432)
T COG0281 265 LALAGADVLIGVSGVGAFTEEMVKEMAKH-PIIF 297 (432)
T ss_pred ccccCCCEEEEcCCCCCcCHHHHHHhccC-CEEe
Confidence 345899997775421 34599999988 9884
No 330
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=36.92 E-value=93 Score=23.47 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccc----c-EEEeCCCCCC-chHHHHHHH-cCCCeee
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCNG-HTTSMDVLW-TGTPVVT 157 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~a----D-v~l~~~~~~~-g~~~lEAma-~G~PVV~ 157 (200)
+.+++.++++|++ +.|.-.=...++..+++.+ | +.++|--|+- +..+.+|+. .++|+|=
T Consensus 31 ~~l~~~a~~~g~~---v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VE 96 (140)
T cd00466 31 ALLRELAAELGVE---VEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIE 96 (140)
T ss_pred HHHHHHHHHcCCE---EEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEE
Confidence 3455666666775 5554332234555555443 4 4467765553 677899986 7999994
No 331
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=36.83 E-value=2.3e+02 Score=22.92 Aligned_cols=40 Identities=3% Similarity=0.013 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCC
Q psy15362 68 STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLD 108 (200)
Q Consensus 68 ~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~ 108 (200)
.-..++....+++++. ++++|..+...-++.+++++-++.
T Consensus 114 Rs~aam~~a~~~~~~~-IvvIGNAPTAL~~l~~li~~g~~~ 153 (210)
T PRK06264 114 RAVASMRLAKELIDGG-IVVIGNAPTALFEVIRLVKEEGIK 153 (210)
T ss_pred HHHHHHHHHHHHCCCC-EEEEECcHHHHHHHHHHHHhCCCC
Confidence 3445555555666777 666675333344556667665554
No 332
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=36.81 E-value=2.1e+02 Score=22.49 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=26.4
Q ss_pred cCCHHHHHhhcccccEEEeCCCC-CCchHH-HHHHHcCCCeeec
Q psy15362 117 VAAKEEHVRRGQLADVCLDTPLC-NGHTTS-MDVLWTGTPVVTL 158 (200)
Q Consensus 117 ~~~~~~~~~~~~~aDv~l~~~~~-~~g~~~-lEAma~G~PVV~~ 158 (200)
.++.+.+..+++.+|+++++... ..-..+ --+...++|+|..
T Consensus 99 ~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 99 RVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISA 142 (202)
T ss_pred cCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34445566778899999987532 111112 2346689999974
No 333
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=36.65 E-value=3e+02 Score=24.27 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=46.9
Q ss_pred HHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec--CCCcchhhhHHHHHh--hcCCCcceecCHHHHHHHHHHh
Q psy15362 120 KEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL--PGETLASRVAASQLA--TLGCPELIARTHKEYQDIAIRL 195 (200)
Q Consensus 120 ~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~--~g~~~~~r~~~~~~~--~~g~~~~ia~~~~~yv~~a~~l 195 (200)
..++..+|..+|+++.=++ .+..|.|...+||+.. +++... ...+++. ..-.|+.+..+.+++++....-
T Consensus 277 ~~di~dll~~sDiLITDyS----Sv~fdf~~l~KPiify~~D~~~y~--~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~ 350 (388)
T COG1887 277 NADINDLLLVSDILITDYS----SVIFDFMLLDKPIIFYTYDLEQYD--ELRGFYLDYKFEAPGEVVETQEELIDAIKPY 350 (388)
T ss_pred chhHHHHHhhhCEEEeech----HHHHHHHHhcCcEEEEecChHHHH--hhhhhhhhHHhcCCccccccHHHHHHHHHhh
Confidence 4678888999999995443 6799999999999974 443321 1112222 2345667777777777666543
Q ss_pred h
Q psy15362 196 G 196 (200)
Q Consensus 196 ~ 196 (200)
.
T Consensus 351 ~ 351 (388)
T COG1887 351 D 351 (388)
T ss_pred h
Confidence 3
No 334
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=36.60 E-value=1.3e+02 Score=25.83 Aligned_cols=8 Identities=0% Similarity=-0.450 Sum_probs=4.8
Q ss_pred cEEEEEcC
Q psy15362 83 SILWLLKF 90 (200)
Q Consensus 83 ~~l~ivG~ 90 (200)
-++++.|+
T Consensus 80 ~~~lFLGD 87 (321)
T cd07420 80 NPYVFNGD 87 (321)
T ss_pred ceEEEecc
Confidence 45666664
No 335
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=36.45 E-value=2.1e+02 Score=22.96 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=19.4
Q ss_pred cccccEEEeCCCCC-CchHHHHHHHcCCCeee
Q psy15362 127 GQLADVCLDTPLCN-GHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 127 ~~~aDv~l~~~~~~-~g~~~lEAma~G~PVV~ 157 (200)
+..+|+++.+++.+ .+...++.|+ .-|+|.
T Consensus 95 l~~~dvlIgaT~~G~~~~~~l~~m~-~~~ivf 125 (226)
T cd05311 95 LKGADVFIGVSRPGVVKKEMIKKMA-KDPIVF 125 (226)
T ss_pred HhcCCEEEeCCCCCCCCHHHHHhhC-CCCEEE
Confidence 35689999888622 1345778776 456664
No 336
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=36.34 E-value=2.2e+02 Score=22.62 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=8.5
Q ss_pred HHHHHHcCCCeeec
Q psy15362 145 SMDVLWTGTPVVTL 158 (200)
Q Consensus 145 ~lEAma~G~PVV~~ 158 (200)
+-++...|+|||+.
T Consensus 80 ~~~~~~~~ipvV~~ 93 (275)
T cd06295 80 PERLAETGLPFVVW 93 (275)
T ss_pred HHHHHhCCCCEEEE
Confidence 34455667777764
No 337
>PRK13699 putative methylase; Provisional
Probab=36.08 E-value=82 Score=25.46 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=25.3
Q ss_pred cccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 129 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
.-|+++|||. ++|+|++-|+.+|.-.+...
T Consensus 163 ~g~~vlDpf~-Gsgtt~~aa~~~~r~~~g~e 192 (227)
T PRK13699 163 PNAIVLDPFA-GSGSTCVAALQSGRRYIGIE 192 (227)
T ss_pred CCCEEEeCCC-CCCHHHHHHHHcCCCEEEEe
Confidence 4699999875 55999999999999999764
No 338
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.02 E-value=2.5e+02 Score=23.22 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHCCCcEEEEEcC
Q psy15362 68 STLQMWVNVLKAVPNSILWLLKF 90 (200)
Q Consensus 68 ~~l~a~~~i~~~~p~~~l~ivG~ 90 (200)
.+++.+.+++++.++..+++++.
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y 97 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTY 97 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEec
Confidence 34444455544444555555543
No 339
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=35.98 E-value=1.8e+02 Score=23.66 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=44.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeec
Q psy15362 83 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 83 ~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~ 158 (200)
+.++.+.+ ...++.+++++++|.. . +.+.+++.. ...|+.+...|-.. --...+++.+|++|++.
T Consensus 2 ~eLvaV~D--~~~e~a~~~a~~~g~~----~---~~d~~eLl~--~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~ 67 (229)
T TIGR03855 2 FEIAAVYD--RNPKDAKELAERCGAK----I---VSDFDEFLP--EDVDIVVEAASQEAVKEYAEKILKNGKDLLIM 67 (229)
T ss_pred eEEEEEEC--CCHHHHHHHHHHhCCc----e---ECCHHHHhc--CCCCEEEECCChHHHHHHHHHHHHCCCCEEEE
Confidence 45666664 3457788888887753 1 223466653 46899987765433 34588999999999984
No 340
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.98 E-value=72 Score=24.50 Aligned_cols=15 Identities=20% Similarity=-0.015 Sum_probs=6.9
Q ss_pred hHHHHHHHcCCCeee
Q psy15362 143 TTSMDVLWTGTPVVT 157 (200)
Q Consensus 143 ~~~lEAma~G~PVV~ 157 (200)
.+.--|-..|.|.|.
T Consensus 134 ~~~~~A~~~gl~~v~ 148 (176)
T PF06506_consen 134 VVCRLARKLGLPGVL 148 (176)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCcEEE
Confidence 344444445555544
No 341
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=35.83 E-value=1.5e+02 Score=24.70 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=24.1
Q ss_pred HHhhcc--cccEEEeCCCCCC--chHHHHHHH--cCCCeee
Q psy15362 123 HVRRGQ--LADVCLDTPLCNG--HTTSMDVLW--TGTPVVT 157 (200)
Q Consensus 123 ~~~~~~--~aDv~l~~~~~~~--g~~~lEAma--~G~PVV~ 157 (200)
+....+ ..|+++=.|..+| .--++++|+ |..|+|-
T Consensus 98 L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 138 (254)
T cd00762 98 LEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIF 138 (254)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEE
Confidence 333445 7899987665333 456999998 7789994
No 342
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=35.82 E-value=2.6e+02 Score=23.25 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=22.9
Q ss_pred cccEEEeCCCCCCchHHHHHHHcCCCeeec
Q psy15362 129 LADVCLDTPLCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~~~lEAma~G~PVV~~ 158 (200)
.=|+++...+...-..+.||..+|+|+|+.
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIai 186 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAI 186 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEE
Confidence 456665555544558899999999999985
No 343
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=35.39 E-value=2.5e+02 Score=25.08 Aligned_cols=74 Identities=11% Similarity=-0.016 Sum_probs=49.1
Q ss_pred cEEEEEcCCc--ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH--cCCCeeec
Q psy15362 83 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVTL 158 (200)
Q Consensus 83 ~~l~ivG~~~--~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~PVV~~ 158 (200)
-.+-|+|+.. .+.+++++++++.|+. -+.+|.+..+.+++.. +..|.+-+..+++ .+....|.|. .|+|.+..
T Consensus 192 ~~VNiig~~~~~~d~~el~~lL~~~Gl~-v~~~~~~~~t~eei~~-~~~A~lniv~~~~-~~~~~A~~L~er~GiP~~~~ 268 (443)
T TIGR01862 192 YDVNIIGEYNIGGDAWVMRIYLEEMGIQ-VVATFTGDGTYDEIRL-MHKAKLNLVHCAR-SANYIANELEERYGIPWMKI 268 (443)
T ss_pred CeEEEEccCcCcccHHHHHHHHHHcCCe-EEEEECCCCCHHHHHh-cccCCEEEEEChH-HHHHHHHHHHHHhCCCeEec
Confidence 4567777422 2346899999999997 5667888777788876 5566666543432 2334455554 69999975
Q ss_pred C
Q psy15362 159 P 159 (200)
Q Consensus 159 ~ 159 (200)
.
T Consensus 269 ~ 269 (443)
T TIGR01862 269 D 269 (443)
T ss_pred c
Confidence 4
No 344
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=35.33 E-value=2.4e+02 Score=24.93 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=49.0
Q ss_pred cEEEEEcCCc------ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHH--HcCCC
Q psy15362 83 SILWLLKFPA------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTP 154 (200)
Q Consensus 83 ~~l~ivG~~~------~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAm--a~G~P 154 (200)
-.+-|+|... .+..+++++.+..|++ -+.+|.+....+++.. +..|++-+..+++. +..+.+.| -.|+|
T Consensus 163 ~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~-v~~~~~~~~~~~~i~~-~~~A~lniv~~~~~-~~~~a~~L~~~~GiP 239 (430)
T cd01981 163 PSVNLIGPSSLGFHNRHDCRELKRLLHTLGIE-VNVVIPEGASVDDLNE-LPKAWFNIVPYREY-GLSAALYLEEEFGMP 239 (430)
T ss_pred CcEEEEcCCCCCCCCcchHHHHHHHHHHcCCe-EEEEEcCCCCHHHHHh-hhhCeEEEEecHHH-HHHHHHHHHHHhCCC
Confidence 3466776421 2347899999999997 6777888777788776 45677766544322 34555555 36999
Q ss_pred eeec
Q psy15362 155 VVTL 158 (200)
Q Consensus 155 VV~~ 158 (200)
.+..
T Consensus 240 ~~~~ 243 (430)
T cd01981 240 SVKI 243 (430)
T ss_pred eEec
Confidence 9854
No 345
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=35.24 E-value=81 Score=22.44 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=45.7
Q ss_pred HHHHHHHCCCcEEEEEcCCcc-cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchH-HHHHHH
Q psy15362 73 WVNVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTT-SMDVLW 150 (200)
Q Consensus 73 ~~~i~~~~p~~~l~ivG~~~~-~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~-~lEAma 150 (200)
+.+++.++|+..++.+..... .-..+........-. ..+.+.. ...+++ ..+|+.+.+.+.+.... .-....
T Consensus 15 l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~-~~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~ 88 (121)
T PF01118_consen 15 LLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGF-EDLSVED-ADPEEL----SDVDVVFLALPHGASKELAPKLLK 88 (121)
T ss_dssp HHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTT-EEEBEEE-TSGHHH----TTESEEEE-SCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccEEEeeeeccccCCeeehhccccccc-cceeEee-cchhHh----hcCCEEEecCchhHHHHHHHHHhh
Confidence 344555689988777654322 112233333222222 4555555 322332 79999988766443333 444468
Q ss_pred cCCCeeecCCCc
Q psy15362 151 TGTPVVTLPGET 162 (200)
Q Consensus 151 ~G~PVV~~~g~~ 162 (200)
.|++||-..++.
T Consensus 89 ~g~~ViD~s~~~ 100 (121)
T PF01118_consen 89 AGIKVIDLSGDF 100 (121)
T ss_dssp TTSEEEESSSTT
T ss_pred CCcEEEeCCHHH
Confidence 999999776653
No 346
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=35.21 E-value=2.2e+02 Score=27.55 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=44.7
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEE
Q psy15362 54 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC 133 (200)
Q Consensus 54 ~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~ 133 (200)
+.|.++|.. -..++++++.+. ..++... +... .+...+ .+++|+. ++.|.- .+ .+..+|++
T Consensus 7 i~viG~G~s------G~salA~~L~~~-G~~V~~s-D~~~-~~~~~~-L~~~gi~----~~~g~~--~~---~~~~~d~v 67 (809)
T PRK14573 7 YHFIGIGGI------GMSALAHILLDR-GYSVSGS-DLSE-GKTVEK-LKAKGAR----FFLGHQ--EE---HVPEDAVV 67 (809)
T ss_pred EEEEEecHH------hHHHHHHHHHHC-CCeEEEE-CCCC-ChHHHH-HHHCCCE----EeCCCC--HH---HcCCCCEE
Confidence 455555532 345556666654 3444332 2112 223443 4555764 456763 23 23578999
Q ss_pred EeCCCCCC-chHHHHHHHcCCCeee
Q psy15362 134 LDTPLCNG-HTTSMDVLWTGTPVVT 157 (200)
Q Consensus 134 l~~~~~~~-g~~~lEAma~G~PVV~ 157 (200)
|.++-..- .-.+.+|...|+||++
T Consensus 68 V~SpgI~~~~p~~~~a~~~gi~v~~ 92 (809)
T PRK14573 68 VYSSSISKDNVEYLSAKSRGNRLVH 92 (809)
T ss_pred EECCCcCCCCHHHHHHHHCCCcEEe
Confidence 87653222 2346667778888876
No 347
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=35.11 E-value=2.1e+02 Score=23.00 Aligned_cols=67 Identities=9% Similarity=-0.015 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEe
Q psy15362 64 KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 135 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~ 135 (200)
++...+++.+++ ..++...+=+ +....-.+.-+.++++|.. -=+.+-+..|.+.+..++...|.++.
T Consensus 68 ~~p~~~i~~~~~---~gad~i~~H~-Ea~~~~~~~l~~ik~~g~k-~GlalnP~Tp~~~i~~~l~~~D~vlv 134 (220)
T PRK08883 68 KPVDRIIPDFAK---AGASMITFHV-EASEHVDRTLQLIKEHGCQ-AGVVLNPATPLHHLEYIMDKVDLILL 134 (220)
T ss_pred CCHHHHHHHHHH---hCCCEEEEcc-cCcccHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHhCCeEEE
Confidence 344556666553 3444222222 2112234566789999997 66777777888899989999998864
No 348
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=34.91 E-value=1.4e+02 Score=21.01 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=39.4
Q ss_pred EEEEEcCCcccH----HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 84 ILWLLKFPAVGE----ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 84 ~l~ivG~~~~~~----~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
++++++..|... ..++..+++.|++ =.|.-.+. .........+|++|.+.-...-..-++..+-++||+..+
T Consensus 5 kIllvC~~G~sTSll~~km~~~~~~~gi~-~~V~A~~~---~~~~~~~~~~DviLl~Pqi~~~~~~i~~~~~~~pV~~I~ 80 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSKMRAQAEKYEVP-VIIEAFPE---TLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVID 80 (106)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCC-EEEEEeec---chhhccccCCCEEEECHHHHHHHHHHHhhcCCCCEEEEC
Confidence 567777655433 3566777888886 33433222 222234567899987642111112222244458999865
Q ss_pred C
Q psy15362 160 G 160 (200)
Q Consensus 160 g 160 (200)
.
T Consensus 81 ~ 81 (106)
T PRK10499 81 S 81 (106)
T ss_pred h
Confidence 3
No 349
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=34.70 E-value=1.1e+02 Score=24.02 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=59.2
Q ss_pred HCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCC---HHHHHhhc--ccccEEEeCCCCCCchHHHHH-----
Q psy15362 79 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---KEEHVRRG--QLADVCLDTPLCNGHTTSMDV----- 148 (200)
Q Consensus 79 ~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~---~~~~~~~~--~~aDv~l~~~~~~~g~~~lEA----- 148 (200)
..++.++++..+ ...++.|.+..++.|..-.++...-..+ ..++...+ ...|+++.+|+..- ..+++.
T Consensus 114 ~~~~~~vl~~~g-~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~~~~v~ftS~~~~-~~~~~~~~~~~ 191 (231)
T PF02602_consen 114 QLRGKRVLILRG-EGGRPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGEIDAVVFTSPSAV-RAFLELLKKNG 191 (231)
T ss_dssp CCTTEEEEEEES-SSSCHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTTTSEEEESSHHHH-HHHHHHSSGHH
T ss_pred hCCCCeEEEEcC-CCccHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCCCCEEEECCHHHH-HHHHHHhHhhh
Confidence 455567777664 2456788888888886534444444411 23444444 46799998886321 112222
Q ss_pred -HHcCCCeeecCCCcchhhhHHHHHhhcCCCc-ceec--CHHHHH
Q psy15362 149 -LWTGTPVVTLPGETLASRVAASQLATLGCPE-LIAR--THKEYQ 189 (200)
Q Consensus 149 -ma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~-~ia~--~~~~yv 189 (200)
....+++++. +...+..++..|... .+++ +.++++
T Consensus 192 ~~~~~~~~~~i------g~~ta~~l~~~g~~~~~va~~~~~~~lv 230 (231)
T PF02602_consen 192 ALLKRVPIVAI------GPRTAKALRELGFKVDIVAERPTIEALV 230 (231)
T ss_dssp HHHTTSEEEES------SHHHHHHHHHTT-SCSEEESSSSHHHHH
T ss_pred hhhhCCEEEEE------CHHHHHHHHHcCCCceEECCCCChhHhh
Confidence 4567777774 344556677889887 5553 444443
No 350
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.40 E-value=1.8e+02 Score=25.79 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHHH---HHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANIQ---ATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l~---~~~~~~gl~~~rv~f~g~~~ 119 (200)
..+.+++..+.+..|+..+ +|+|.++...+.++ +++++.+. +++++..+.|
T Consensus 259 ~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~--~~~~v~~ysp 315 (418)
T PRK14336 259 QQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMADIGY--DAIHVAAYSP 315 (418)
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCC--CEEEeeecCC
Confidence 5678888888888888865 78887665555554 56667665 5666655554
No 351
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.26 E-value=2.7e+02 Score=23.11 Aligned_cols=139 Identities=10% Similarity=0.149 Sum_probs=0.0
Q ss_pred hhhhhhhhhcCCCCCCEEEEEeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEec
Q psy15362 38 SIVITSRQQYGLPEDAIVYCNFNQLYK-IDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSN 116 (200)
Q Consensus 38 ~~~~~~R~~l~l~~~~~v~~~~~r~~K-~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g 116 (200)
.....+|++..+|- ++.++..-..+ +.+.|++.+++.--.. +++..-+....+.+.+.++++|+. -=..+.+
T Consensus 81 ~~~~~~r~~~~~p~--vlm~Y~N~i~~~G~e~F~~~~~~aGvdg----viipDLP~ee~~~~~~~~~~~gi~-~I~lv~P 153 (263)
T CHL00200 81 SILSEVNGEIKAPI--VIFTYYNPVLHYGINKFIKKISQAGVKG----LIIPDLPYEESDYLISVCNLYNIE-LILLIAP 153 (263)
T ss_pred HHHHHHhcCCCCCE--EEEecccHHHHhCHHHHHHHHHHcCCeE----EEecCCCHHHHHHHHHHHHHcCCC-EEEEECC
Q ss_pred cCCHHHHHhhccccc--EEEeCCC-CCCc-----hHHHHHH-----HcCCCeeecCCCcchhhhHHHHHhhcCCCcceec
Q psy15362 117 VAAKEEHVRRGQLAD--VCLDTPL-CNGH-----TTSMDVL-----WTGTPVVTLPGETLASRVAASQLATLGCPELIAR 183 (200)
Q Consensus 117 ~~~~~~~~~~~~~aD--v~l~~~~-~~~g-----~~~lEAm-----a~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia~ 183 (200)
..|.+.+..+.+.++ ||+.+.+ .+|. ..+.|-+ ...+|++.--|-.-.+.... +...|.+.+|.-
T Consensus 154 tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~--~~~~GADGvVVG 231 (263)
T CHL00200 154 TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQ--IKGWNINGIVIG 231 (263)
T ss_pred CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH--HHhcCCCEEEEC
Q ss_pred CH
Q psy15362 184 TH 185 (200)
Q Consensus 184 ~~ 185 (200)
+.
T Consensus 232 Sa 233 (263)
T CHL00200 232 SA 233 (263)
T ss_pred HH
No 352
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=34.02 E-value=2e+02 Score=21.45 Aligned_cols=65 Identities=12% Similarity=0.043 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHC----CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCC
Q psy15362 69 TLQMWVNVLKAV----PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP 137 (200)
Q Consensus 69 ~l~a~~~i~~~~----p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~ 137 (200)
..++..++++.+ .+-+.+++|.+..--..+..++.+.|.. |....... .++....+.||+++...
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gat---V~~~~~~t-~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGAT---VYSCDWKT-IQLQSKVHDADVVVVGS 79 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEeCCCC-cCHHHHHhhCCEEEEec
Confidence 445555555543 3567777775433334455555555544 55555332 13444556788887543
No 353
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=33.99 E-value=1.4e+02 Score=24.82 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCH---------------------HHHHhhcccccEEEeCCCC
Q psy15362 81 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK---------------------EEHVRRGQLADVCLDTPLC 139 (200)
Q Consensus 81 p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~---------------------~~~~~~~~~aDv~l~~~~~ 139 (200)
.+.+.+++|.|+..+..+.. +.++|. .+|.+..+.+. +++...+..+|+++.+.|-
T Consensus 124 ~~k~vlvlGaGGaarai~~a-L~~~G~--~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYA-LASLGV--TDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred CCceEEEEcCcHHHHHHHHH-HHHcCC--CeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 35678888876544443333 445576 45666665321 1222334568999988764
Q ss_pred C
Q psy15362 140 N 140 (200)
Q Consensus 140 ~ 140 (200)
+
T Consensus 201 g 201 (282)
T TIGR01809 201 D 201 (282)
T ss_pred C
Confidence 4
No 354
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.80 E-value=1.6e+02 Score=26.35 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHH---HHHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANI---QATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l---~~~~~~~gl~~~rv~f~g~~~ 119 (200)
..+.+++.++.+..|+..+ +|+|.++...+.+ .+++++.+. +++++..+.|
T Consensus 283 ~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl~~~~~~~~--~~~~~f~~sp 339 (445)
T PRK14340 283 EEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATLSLMEEVRF--DSAFMFYYSV 339 (445)
T ss_pred HHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHHHHHHhcCC--CEEeeEEecC
Confidence 5788888999888898765 5788766555544 456777776 6676666555
No 355
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=33.70 E-value=2.8e+02 Score=25.46 Aligned_cols=115 Identities=8% Similarity=0.040 Sum_probs=61.0
Q ss_pred hhhhhcCCCCCC-EEEEE----eCCCCCCCHHHHHHHHHHHHH--------CCCcEEEEEcCC---cccHHHHHHHHHHc
Q psy15362 42 TSRQQYGLPEDA-IVYCN----FNQLYKIDPSTLQMWVNVLKA--------VPNSILWLLKFP---AVGEANIQATAQAL 105 (200)
Q Consensus 42 ~~R~~l~l~~~~-~v~~~----~~r~~K~~~~~l~a~~~i~~~--------~p~~~l~ivG~~---~~~~~~l~~~~~~~ 105 (200)
..|++.++|.+. ++++. .+....+++..++++.+-+.. .++-++-|+|+- ..+..+|+++++..
T Consensus 167 ~~~~~~~~p~~~pVi~v~TpgF~Gs~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~ 246 (515)
T TIGR01286 167 NAKKEGFIPDDFPVPFAHTPSFVGSHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLM 246 (515)
T ss_pred HHHHhcCCCCCCceEEeeCCCCcccHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHc
Confidence 456666677664 33333 233345556666666543221 234456667521 12357899999999
Q ss_pred CCCCCcE-----------------EEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH--cCCCeeecC
Q psy15362 106 GLDQHRI-----------------LFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVTLP 159 (200)
Q Consensus 106 gl~~~rv-----------------~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~PVV~~~ 159 (200)
|++ -.+ .+.|-.+.+++...-+ |.+.+.-.++.+ ....+.|. .|+|.+...
T Consensus 247 Gi~-~~~l~d~s~~~d~p~~g~~~~~~ggttleei~~a~~-A~~~ivl~~~~~-~~~a~~l~~~~g~p~~~~~ 316 (515)
T TIGR01286 247 GVG-YTLLSDPEEVLDTPADGEFRMYAGGTTLEEMKDAPN-AEATVLLQPYTL-RKTKEYIEKTWKQETPKLN 316 (515)
T ss_pred CCC-eEEccCccccccCCCCCCccccCCCCCHHHHHHhhh-CcEEEEEchhhh-HHHHHHHHHHhCCCcccCC
Confidence 996 222 2234556677776443 333332233322 23444444 699986543
No 356
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=33.62 E-value=1.9e+02 Score=24.72 Aligned_cols=47 Identities=26% Similarity=0.200 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc
Q psy15362 66 DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV 117 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~ 117 (200)
.+..+++..++.++ +.++.+++|+ ++.+++.++++|++.+++.+...
T Consensus 25 d~~vl~Aa~~a~~e-g~~~piLvG~----~~~I~~~~~~~g~~~~~~eII~~ 71 (324)
T PRK09653 25 DERVLKAAKRLQKE-GLVEPILLGN----PEEIRAKAKELGLDLDGVEIIDP 71 (324)
T ss_pred CHHHHHHHHHHHHC-CCceEEEECC----HHHHHHHHHHcCCCcCCCEEECC
Confidence 45688888886664 6789999985 46899999998875466666654
No 357
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=33.56 E-value=1.1e+02 Score=25.50 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccC
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
+.+++.+........+.+++|.|+..+..+..++ ..|+ .+|.+..+.
T Consensus 114 ~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~-~~G~--~~I~I~nR~ 160 (284)
T PRK12549 114 FAESFRRGLPDASLERVVQLGAGGAGAAVAHALL-TLGV--ERLTIFDVD 160 (284)
T ss_pred HHHHHHhhccCccCCEEEEECCcHHHHHHHHHHH-HcCC--CEEEEECCC
Confidence 4455443211233457888887654444444443 4576 457666654
No 358
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.50 E-value=1.6e+02 Score=26.35 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHHH---HHHHHcCCCCCcEEEeccCCH
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANIQ---ATAQALGLDQHRILFSNVAAK 120 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l~---~~~~~~gl~~~rv~f~g~~~~ 120 (200)
+.+.+++..+.+..|+..+ +|+|.++...+.++ ++++++++ +++++..+.|+
T Consensus 293 e~~~~~v~~ir~~~pgi~i~~d~IvGfPgET~edf~~Tl~~i~~l~~--~~~~~~~~sp~ 350 (455)
T PRK14335 293 EHYLSLVGKLKASIPNVALSTDILIGFPGETEEDFEQTLDLMREVEF--DSAFMYHYNPR 350 (455)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC--CeEEEEEecCC
Confidence 5788888989888888654 57887665555554 46677776 67777666553
No 359
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=33.33 E-value=29 Score=24.51 Aligned_cols=38 Identities=24% Similarity=0.171 Sum_probs=24.3
Q ss_pred HHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeecC
Q psy15362 121 EEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 121 ~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~ 159 (200)
+++.... ..|++++....+. ..-..+++..|+.||+.+
T Consensus 52 ~~~~~~~-~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~n 90 (117)
T PF03447_consen 52 EELIDDP-DIDVVVECTSSEAVAEYYEKALERGKHVVTAN 90 (117)
T ss_dssp HHHHTHT-T-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-
T ss_pred HHHhcCc-CCCEEEECCCchHHHHHHHHHHHCCCeEEEEC
Confidence 4555433 6999999843222 234789999999999954
No 360
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=33.32 E-value=69 Score=27.10 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=38.3
Q ss_pred hcCCCCCCEEEEEeCCCCCCCHHH-HHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEE
Q psy15362 46 QYGLPEDAIVYCNFNQLYKIDPST-LQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILF 114 (200)
Q Consensus 46 ~l~l~~~~~v~~~~~r~~K~~~~~-l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f 114 (200)
+-|++-=++-||++...+|+.+.+ ++.+.+|.+.. +.-|++-|++|...+.+++.++ +|+ .+|-+
T Consensus 167 ~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~-~GI--~KiNi 232 (286)
T PRK08610 167 KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST-GLPLVLHGGTGIPTKDIQKAIP-FGT--AKINV 232 (286)
T ss_pred HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHH-CCC--eEEEe
Confidence 446532223344444455553433 56666676665 5779999987666677776655 588 34544
No 361
>PRK08291 ectoine utilization protein EutC; Validated
Probab=33.26 E-value=1.4e+02 Score=25.49 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=40.5
Q ss_pred CC-cEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCH--H------------------HHHhhcccccEEEeCCCC
Q psy15362 81 PN-SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK--E------------------EHVRRGQLADVCLDTPLC 139 (200)
Q Consensus 81 p~-~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~--~------------------~~~~~~~~aDv~l~~~~~ 139 (200)
++ .++.++|.|+..+..+..+....++ ++|.+.++-+. + +....+..+|+++.+.+.
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~--~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPI--REVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPS 207 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCC--CEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCC
Confidence 44 4788888754444445555443454 45555554421 1 122334568998876654
Q ss_pred CCchHHHHHHHcCCCeee
Q psy15362 140 NGHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 140 ~~g~~~lEAma~G~PVV~ 157 (200)
..+..-.|.+..|.-|..
T Consensus 208 ~~p~i~~~~l~~g~~v~~ 225 (330)
T PRK08291 208 EEPILKAEWLHPGLHVTA 225 (330)
T ss_pred CCcEecHHHcCCCceEEe
Confidence 444444455666665554
No 362
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=33.19 E-value=1e+02 Score=22.60 Aligned_cols=84 Identities=15% Similarity=0.059 Sum_probs=51.3
Q ss_pred HHHHHHHHHHCCCcEEEEEcCCcc-----cHHHHHHHHHHcCCCCCcEEEeccCC--HHHHH---hhcccc---cEEEeC
Q psy15362 70 LQMWVNVLKAVPNSILWLLKFPAV-----GEANIQATAQALGLDQHRILFSNVAA--KEEHV---RRGQLA---DVCLDT 136 (200)
Q Consensus 70 l~a~~~i~~~~p~~~l~ivG~~~~-----~~~~l~~~~~~~gl~~~rv~f~g~~~--~~~~~---~~~~~a---Dv~l~~ 136 (200)
++...++.++.+..++++-|+.+. +.+.+++.+.+.|++.++|+.-..-. .++.. .++... .+.|.|
T Consensus 23 ~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~i~lVT 102 (150)
T cd06259 23 LDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRERGIRSVLLVT 102 (150)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHhcCCCeEEEEC
Confidence 344456777888888888775321 33567888888898756666655432 23222 223333 677777
Q ss_pred CCCCCchHHHHHHHcCC
Q psy15362 137 PLCNGHTTSMDVLWTGT 153 (200)
Q Consensus 137 ~~~~~g~~~lEAma~G~ 153 (200)
+++...-+...+-.++.
T Consensus 103 s~~H~~Ra~~~~~~~~~ 119 (150)
T cd06259 103 SAYHMPRALLIFRKAGL 119 (150)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 77665555666666665
No 363
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=33.18 E-value=2.8e+02 Score=23.64 Aligned_cols=72 Identities=11% Similarity=-0.024 Sum_probs=40.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhh--cccccEEEeCCCCCC-chHHHHHHHcCCCee
Q psy15362 80 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRR--GQLADVCLDTPLCNG-HTTSMDVLWTGTPVV 156 (200)
Q Consensus 80 ~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~--~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV 156 (200)
.|+..+..+.+..+..+ -.+.++++|+. ..+. ..+++..- +...|+.++..+... ---...+...|+.||
T Consensus 26 ~~~velvAVvdid~es~-gla~A~~~Gi~---~~~~---~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~eaGk~VI 98 (302)
T PRK08300 26 SEHLEPGAMVGIDPESD-GLARARRLGVA---TSAE---GIDGLLAMPEFDDIDIVFDATSAGAHVRHAAKLREAGIRAI 98 (302)
T ss_pred CCCcEEEEEEeCChhhH-HHHHHHHcCCC---cccC---CHHHHHhCcCCCCCCEEEECCCHHHHHHHHHHHHHcCCeEE
Confidence 68888887664322222 33457777875 2222 23555542 245788877654332 233666777888888
Q ss_pred ec
Q psy15362 157 TL 158 (200)
Q Consensus 157 ~~ 158 (200)
..
T Consensus 99 D~ 100 (302)
T PRK08300 99 DL 100 (302)
T ss_pred EC
Confidence 64
No 364
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=32.95 E-value=1.8e+02 Score=20.68 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=42.3
Q ss_pred EEEEEcCCcccH----HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH--cCCCeee
Q psy15362 84 ILWLLKFPAVGE----ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVT 157 (200)
Q Consensus 84 ~l~ivG~~~~~~----~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~PVV~ 157 (200)
++++++..|... ..+++.++..|.+ .+.--.+..++...+..+|++|...-...-..-+|-.+ .|+||..
T Consensus 3 ~IlLvC~aGmSTSlLV~Km~~aA~~kg~~----~~I~A~s~~e~~~~~~~~DvvLlGPQv~y~~~~~~~~~~~~giPV~v 78 (102)
T COG1440 3 KILLVCAAGMSTSLLVTKMKKAAESKGKD----VTIEAYSETELSEYIDNADVVLLGPQVRYMLKQLKEAAEEKGIPVEV 78 (102)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHhCCCc----eEEEEechhHHHHhhhcCCEEEEChHHHHHHHHHHHHhcccCCCeEE
Confidence 456666555433 4667788888886 22334445677777889999986532111122233333 6679987
Q ss_pred cC
Q psy15362 158 LP 159 (200)
Q Consensus 158 ~~ 159 (200)
-+
T Consensus 79 I~ 80 (102)
T COG1440 79 ID 80 (102)
T ss_pred eC
Confidence 54
No 365
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=32.94 E-value=1.5e+02 Score=24.44 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcc--cccEEEeCCCCCCchHHHHHHH-cCCCeeecCCCcchhhhH--
Q psy15362 94 GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETLASRVA-- 168 (200)
Q Consensus 94 ~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~--~aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~~~~~r~~-- 168 (200)
+..+|.+.++++|+. +.-+.+ +.+.+. ++. .++.+=.+|..-.-..+++.+| .|+|||.+.|-.-.+.+.
T Consensus 57 ~~~~L~~~~~~~gi~---f~stpf-d~~s~d-~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~A 131 (241)
T PF03102_consen 57 QHKELFEYCKELGID---FFSTPF-DEESVD-FLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERA 131 (241)
T ss_dssp HHHHHHHHHHHTT-E---EEEEE--SHHHHH-HHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHH
T ss_pred HHHHHHHHHHHcCCE---EEECCC-CHHHHH-HHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHH
Confidence 456788899999986 333444 322222 222 2555533343333466888887 899999887754433322
Q ss_pred HHHHhhcCCCc
Q psy15362 169 ASQLATLGCPE 179 (200)
Q Consensus 169 ~~~~~~~g~~~ 179 (200)
..+++..|..+
T Consensus 132 v~~~~~~~~~~ 142 (241)
T PF03102_consen 132 VEVLREAGNED 142 (241)
T ss_dssp HHHHHHHCT--
T ss_pred HHHHHhcCCCC
Confidence 23443334444
No 366
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.83 E-value=1.6e+02 Score=26.42 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHCCCcE---EEEEcCCcccHHHH---HHHHHHcCCCCCcEEEeccCCH
Q psy15362 67 PSTLQMWVNVLKAVPNSI---LWLLKFPAVGEANI---QATAQALGLDQHRILFSNVAAK 120 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~---l~ivG~~~~~~~~l---~~~~~~~gl~~~rv~f~g~~~~ 120 (200)
..+.+++..+.+..|++. -+|+|.++...+.+ .++++++++ +++.+..+.|.
T Consensus 286 ~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~v~~l~~--~~~~~f~ys~~ 343 (449)
T PRK14332 286 EEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQF--DMAFMFKYSER 343 (449)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHhCCC--CEEEEEEecCC
Confidence 578888888888888875 47888765555544 456777776 66766666554
No 367
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=32.77 E-value=2.5e+02 Score=24.88 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHH
Q psy15362 70 LQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDV 148 (200)
Q Consensus 70 l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEA 148 (200)
..++++++.+. ...+... +.... +..+ ..+++|+. .+.| -+ .+ .+..+|+++.+.-..- --.+.+|
T Consensus 12 m~~la~~L~~~-G~~v~~~-D~~~~-~~~~-~l~~~gi~----~~~g-~~-~~---~~~~~d~vV~spgi~~~~p~~~~a 78 (448)
T TIGR01082 12 MSGIAEILLNR-GYQVSGS-DIAEN-ATTK-RLEALGIP----IYIG-HS-AE---NLDDADVVVVSAAIKDDNPEIVEA 78 (448)
T ss_pred HHHHHHHHHHC-CCeEEEE-CCCcc-hHHH-HHHHCcCE----EeCC-CC-HH---HCCCCCEEEECCCCCCCCHHHHHH
Confidence 34456666554 3444332 22222 2222 23455664 4456 32 22 2346898887653322 2347788
Q ss_pred HHcCCCeeec
Q psy15362 149 LWTGTPVVTL 158 (200)
Q Consensus 149 ma~G~PVV~~ 158 (200)
...|+||++.
T Consensus 79 ~~~~i~v~~~ 88 (448)
T TIGR01082 79 KERGIPVIRR 88 (448)
T ss_pred HHcCCceEeH
Confidence 8888888863
No 368
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=32.64 E-value=3.1e+02 Score=23.23 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH-cCCCeeecCCCcc
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETL 163 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~~~ 163 (200)
..|++.-++.|+. +.+.-...++.......+|++=-+..--.-+.+++|.+ +|+||....|..+
T Consensus 77 ~iL~~vk~~~Glp----vvTeV~~~~~~~~~ae~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~ 141 (281)
T PRK12457 77 RIFEEVKARFGVP----VITDVHEVEQAAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFM 141 (281)
T ss_pred HHHHHHHHHHCCc----eEEEeCCHHHHHHHhhhCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcC
Confidence 3456677788986 55666666666666777999955543333456777776 8999999988543
No 369
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=32.63 E-value=58 Score=23.06 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCcEEEEEcCCcc---cHHHHHHHHHHcCCC
Q psy15362 70 LQMWVNVLKAVPNSILWLLKFPAV---GEANIQATAQALGLD 108 (200)
Q Consensus 70 l~a~~~i~~~~p~~~l~ivG~~~~---~~~~l~~~~~~~gl~ 108 (200)
.+.+..++...|+.-++++|.|.. -.+.+++.++++|+.
T Consensus 41 ~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ 82 (110)
T PF04430_consen 41 PEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIG 82 (110)
T ss_dssp THHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-E
T ss_pred HHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCe
Confidence 445556666677777888886421 246778888888875
No 370
>KOG0830|consensus
Probab=32.63 E-value=2.9e+02 Score=22.89 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=60.8
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHH-HHCCCcEEEEEcCCcccHHHHHHHHHHcCCCC--CcEEEeccCCHHHHHhh
Q psy15362 50 PEDAIVYCNFNQLYKIDPSTLQMWVNVL-KAVPNSILWLLKFPAVGEANIQATAQALGLDQ--HRILFSNVAAKEEHVRR 126 (200)
Q Consensus 50 ~~~~~v~~~~~r~~K~~~~~l~a~~~i~-~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~--~rv~f~g~~~~~~~~~~ 126 (200)
..|.+.+..+++..+ .++-+...|. -..| +.+.++..++.++..+.++++.-|-.+ .|+. .|... .++.+.
T Consensus 13 ~~d~~~i~~~~~twe---kl~~aar~i~aienp-~dv~v~ssr~~gqravlkfa~~tgatpiag~ft-pg~ft-n~iq~~ 86 (254)
T KOG0830|consen 13 RSDGIYIINLGRTWE---KLLLAARAIVAIENP-ADVSVISSRNTGQRAVLKFAAATGATPIAGRFT-PGTFT-NQIQAA 86 (254)
T ss_pred cCCceEEeeccccHH---HHHHHHHHHhhccCc-cceEEEccCCcchhHHHHHHHhhCCCccccccc-ccccc-hHHHHh
Confidence 345566666555432 2333322222 2344 344455555566667778888877542 3433 22222 345555
Q ss_pred cccccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 127 GQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
+..=-+++.+-|..-.-.+.|+-.+++|+|+..
T Consensus 87 f~epr~lvvtdpr~d~q~~~E~s~~n~p~ialc 119 (254)
T KOG0830|consen 87 FREPRLLVVTDPRADHQPLTEASYVNLPTIALC 119 (254)
T ss_pred hcCCceeeecCcccccchhhhhhhcCCceEEEe
Confidence 666677776666665677999999999999853
No 371
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=32.58 E-value=1.5e+02 Score=24.92 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=52.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCH---------------HHHHhhcccccEEEeCCCCCC-chH
Q psy15362 81 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK---------------EEHVRRGQLADVCLDTPLCNG-HTT 144 (200)
Q Consensus 81 p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~---------------~~~~~~~~~aDv~l~~~~~~~-g~~ 144 (200)
++.+++++|.|.-. ..+-..++.+|. +|+...+.+. +++..+++.+|+.+++.|..- .-.
T Consensus 151 ~g~kvlViG~G~iG-~~~a~~L~~~Ga---~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~ 226 (296)
T PRK08306 151 HGSNVLVLGFGRTG-MTLARTLKALGA---NVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE 226 (296)
T ss_pred CCCEEEEECCcHHH-HHHHHHHHHCCC---EEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH
Confidence 47899999975333 334555666664 3665554432 244556788999998876321 223
Q ss_pred HHHHHHcCCCeee---cCCCc-c--hhhhHHHHHhhcCCCccee
Q psy15362 145 SMDVLWTGTPVVT---LPGET-L--ASRVAASQLATLGCPELIA 182 (200)
Q Consensus 145 ~lEAma~G~PVV~---~~g~~-~--~~r~~~~~~~~~g~~~~ia 182 (200)
.++.|..|.=+|= .+|.. + ..+.|...+...|+|..++
T Consensus 227 ~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~~~~lpg~va 270 (296)
T PRK08306 227 VLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALLAPGLPGKVA 270 (296)
T ss_pred HHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEEECCCCccCC
Confidence 4445555554441 23332 1 1222222233457777773
No 372
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=32.46 E-value=1.6e+02 Score=24.76 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCH-HHH---Hhhc--ccccEEEeCC
Q psy15362 66 DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK-EEH---VRRG--QLADVCLDTP 137 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~-~~~---~~~~--~~aDv~l~~~ 137 (200)
.+..+++...+.+ .+.++++++|+ ++.+++.++++|++.+++.+...-.. +.+ ..+. ..+|.++...
T Consensus 23 d~~vl~A~~~~~~-~~~~~~iLvG~----~~~I~~~~~~~~l~~~~ieIi~~~~~~~s~~~a~~lv~~G~aD~~vsg~ 95 (294)
T TIGR02706 23 DEPVLEAVKEAKE-HGIARAILVGD----EEKINEIAKKIGMNLDDVEIVNAPSPKKAALLAVRLVSTGKADMLMKGL 95 (294)
T ss_pred CHHHHHHHHHHHH-CCCceEEEECC----HHHHHHHHHHcCCCccCcEEECCCCcHHHHHHHHHHHHCCCCCEEEeCC
Confidence 3567888777554 57799999985 36788889988886567777665331 222 1222 3689998543
No 373
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.37 E-value=2e+02 Score=25.82 Aligned_cols=51 Identities=12% Similarity=0.273 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHHH---HHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANIQ---ATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l~---~~~~~~gl~~~rv~f~g~~~ 119 (200)
+.+++++..+.+..|+..+ +|+|.++...+.++ ++++++++ +++++..+.|
T Consensus 290 e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~--~~v~i~~ysp 346 (459)
T PRK14338 290 ARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRF--DKVHIAAYSP 346 (459)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHcCC--CEeEEEecCC
Confidence 5788888888888888764 67886555555444 56777776 6666655544
No 374
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=32.09 E-value=1.8e+02 Score=26.16 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcC--------CCCCcEEEecc
Q psy15362 63 YKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALG--------LDQHRILFSNV 117 (200)
Q Consensus 63 ~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~g--------l~~~rv~f~g~ 117 (200)
.......++.....+++.| .+++++|+ ++.+++.+++++ +..+|+.+..-
T Consensus 105 D~aP~~iV~Ga~~Al~~~~-l~iiLVGd----e~~I~~~l~~~~~~~~l~~~~~~~ri~IvhA 162 (437)
T PRK13845 105 DYAPGPILEGCLQAISRLP-LNIKFVGE----IEKVKEAAEALGLEELLEKAIDAGHLELIAS 162 (437)
T ss_pred CcChHHHHHHHHHHHHhCC-CEEEEEeC----HHHHHHHHHhcccccccccccccCceEEEeC
Confidence 3456678888888888888 99999985 467777777766 32257777553
No 375
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=31.95 E-value=1.9e+02 Score=25.77 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHHH---HHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANIQ---ATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l~---~~~~~~gl~~~rv~f~g~~~ 119 (200)
.++++++.++.+..|+..+ +|+|.++...+.++ ++++++++ +++++..+.|
T Consensus 282 ~~~~~~v~~ir~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~--~~~~~~~~sp 338 (438)
T TIGR01574 282 EWYLNLVRKLRAACPNVSISTDIIVGFPGETEEDFEETLDLLREVEF--DSAFSFIYSP 338 (438)
T ss_pred HHHHHHHHHHHHhCCCCeEeeCEEEeCCCCCHHHHHHHHHHHHhcCC--CeeeeEEecC
Confidence 5678888888887888765 78887555444443 56667665 5677665544
No 376
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=31.93 E-value=95 Score=21.31 Aligned_cols=52 Identities=8% Similarity=-0.044 Sum_probs=31.8
Q ss_pred EEEeCCCCCC-CHHHHHHHHHHHHHCCCcEEEEEcCCcc-------------cHHHHHHHHHHcCC
Q psy15362 56 YCNFNQLYKI-DPSTLQMWVNVLKAVPNSILWLLKFPAV-------------GEANIQATAQALGL 107 (200)
Q Consensus 56 ~~~~~r~~K~-~~~~l~a~~~i~~~~p~~~l~ivG~~~~-------------~~~~l~~~~~~~gl 107 (200)
++++-.+... ...+.+.+.++++..+...+++.|+-+. ..+.+.+++.+.++
T Consensus 3 i~~vY~pp~~~~~~~~~~l~~~~~~~~~~~~Ii~GDFN~~~~~w~~~~~~~~~~~~l~~~~~~~~l 68 (119)
T PF14529_consen 3 IISVYAPPSSEREEFFDQLRQLLKNLPPAPIIIGGDFNAHHPNWDSSNTNSRRGEQLLDWLDSHNL 68 (119)
T ss_dssp EEEEE--TTS-CHHHHHHHHHHHHCCTTSSEEEEEE-----GGGT-SCHHHHHHHHHHHHHHHCTE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhCCCCCEEEEeECCCCchhhhhccccchhHHHHHHHhhhcee
Confidence 4444444333 5678899999998888778888886221 11346667777655
No 377
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.73 E-value=58 Score=28.65 Aligned_cols=82 Identities=11% Similarity=-0.000 Sum_probs=50.3
Q ss_pred CcEEEeccCCH-HHHHhhcccccEEEeCC--CC-C-C---chHHHHHHHcCCCeeecCCCcchhhhHHHHHhh--cCCCc
Q psy15362 110 HRILFSNVAAK-EEHVRRGQLADVCLDTP--LC-N-G---HTTSMDVLWTGTPVVTLPGETLASRVAASQLAT--LGCPE 179 (200)
Q Consensus 110 ~rv~f~g~~~~-~~~~~~~~~aDv~l~~~--~~-~-~---g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~--~g~~~ 179 (200)
+++...|+.+. ..+...+..-|+++.-+ +. + + .+-+.|+++||.|.+|..=. .+-.. .|-.-
T Consensus 237 ~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~--------~~e~~f~pgk~~ 308 (373)
T COG4641 237 PNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWK--------DLEKFFKPGKDI 308 (373)
T ss_pred chhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHH--------HHHHhcCCchhe
Confidence 34555666654 66777777778876433 21 1 1 35699999999999985321 11111 13333
Q ss_pred ceecCHHHHHHHHHHhhcCC
Q psy15362 180 LIARTHKEYQDIAIRLGTDR 199 (200)
Q Consensus 180 ~ia~~~~~yv~~a~~l~~d~ 199 (200)
+++.|-+++.+.+..++..+
T Consensus 309 iv~~d~kdl~~~~~yll~h~ 328 (373)
T COG4641 309 IVYQDSKDLKEKLKYLLNHP 328 (373)
T ss_pred EEecCHHHHHHHHHHHhcCc
Confidence 66788888888777766543
No 378
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=31.65 E-value=3.4e+02 Score=24.15 Aligned_cols=69 Identities=19% Similarity=0.044 Sum_probs=42.0
Q ss_pred EEEEEcCC-cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccc-ccEEEeCCCCCCchHHHHHHHcCCCeee
Q psy15362 84 ILWLLKFP-AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVCLDTPLCNGHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 84 ~l~ivG~~-~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~-aDv~l~~~~~~~g~~~lEAma~G~PVV~ 157 (200)
...++|.- ..+..+++++.+++|+. -++.|.|. +.+++...-++ +-+.+ +++.+...-+| .-.|+|.+.
T Consensus 167 ~vnl~G~~~~gd~~eik~lL~~~Gi~-~~~~~~G~-~~~ei~~a~~A~~~i~l--~~~~~~a~~l~-~~~GvP~~~ 237 (422)
T TIGR02015 167 TLVLLGEIFPVDAMVIGGVLQPIGVE-SGPTVPGR-DWRELYAALDSSAVAVL--HPFYEATARLF-EAAGVKIVG 237 (422)
T ss_pred ceeeecCCCcccHHHHHHHHHHcCCC-eEEecCCC-CHHHHHhhhcCeEEEEe--CccchHHHHHH-HHcCCceec
Confidence 45556631 12457899999999997 66666554 77888765433 23334 34433333333 379999864
No 379
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=31.53 E-value=2.7e+02 Score=25.15 Aligned_cols=72 Identities=10% Similarity=-0.036 Sum_probs=47.6
Q ss_pred cEEEEEcCCc--ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH--cCCCeee
Q psy15362 83 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVT 157 (200)
Q Consensus 83 ~~l~ivG~~~--~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~PVV~ 157 (200)
-.+-|+|+.. .+..++++++++.|+. -+.+|.+..+.+++.. +..|.+-|..++. .+..+.+.|. .|+|.+.
T Consensus 192 ~~VNiiG~~~~~gd~~elk~lL~~~Gl~-v~~~~~~~~s~eei~~-~~~A~lniv~~~~-~~~~~A~~L~erfGiP~~~ 267 (475)
T PRK14478 192 YDINILGEYNLAGELWQVKPLLDRLGIR-VVACITGDARYDDVAS-AHRARANMMVCSG-AMINLARKMEERYGIPFFE 267 (475)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHcCCe-EEEEcCCCCCHHHHHh-cccCcEEEEEcHH-HHHHHHHHHHHHhCCCEEe
Confidence 4567777422 2346899999999997 5567888777888886 6667765543321 2234455554 6999875
No 380
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=31.48 E-value=3.5e+02 Score=23.50 Aligned_cols=126 Identities=16% Similarity=0.213 Sum_probs=62.6
Q ss_pred hcCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCC-cEEEEEcCC--cccHHHHHHHHHHcCCCCCcEEEeccCCHHH
Q psy15362 46 QYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPN-SILWLLKFP--AVGEANIQATAQALGLDQHRILFSNVAAKEE 122 (200)
Q Consensus 46 ~l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~-~~l~ivG~~--~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~ 122 (200)
.|.++.+. +||.+|+..-+-..+++.+..+ + .|+ -++++-|.. .-....++++-++-| .+|..+
T Consensus 26 sL~I~~Ge-I~GIIG~SGAGKSTLiR~iN~L-e-~PtsG~v~v~G~di~~l~~~~Lr~~R~~IG-----MIFQhF----- 92 (339)
T COG1135 26 SLEIPKGE-IFGIIGYSGAGKSTLLRLINLL-E-RPTSGSVFVDGQDLTALSEAELRQLRQKIG-----MIFQHF----- 92 (339)
T ss_pred eEEEcCCc-EEEEEcCCCCcHHHHHHHHhcc-C-CCCCceEEEcCEecccCChHHHHHHHhhcc-----EEeccc-----
Confidence 35566654 6788888766666677777654 3 254 455554421 122344554444423 233221
Q ss_pred HHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeecCCCcchhhhHHHHHhhcCCCccee-------cCHHHHHHHHHHh
Q psy15362 123 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA-------RTHKEYQDIAIRL 195 (200)
Q Consensus 123 ~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~ia-------~~~~~yv~~a~~l 195 (200)
.+++. .++.|..|.-+=+-..+-.....|+ ..+++-.|++++-. .+....|.+|-+|
T Consensus 93 --nLLss-------------rTV~~NvA~PLeiag~~k~ei~~RV-~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 93 --NLLSS-------------RTVFENVAFPLELAGVPKAEIKQRV-AELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred --ccccc-------------chHHhhhhhhHhhcCCCHHHHHHHH-HHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 12222 2333333332222111111112222 34566667776543 3567888888888
Q ss_pred hcCCC
Q psy15362 196 GTDRD 200 (200)
Q Consensus 196 ~~d~e 200 (200)
+.+|.
T Consensus 157 a~~P~ 161 (339)
T COG1135 157 ANNPK 161 (339)
T ss_pred hcCCC
Confidence 88874
No 381
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=31.38 E-value=1.6e+02 Score=23.01 Aligned_cols=35 Identities=23% Similarity=0.106 Sum_probs=23.6
Q ss_pred hcccccEEE---eCCCC--CCch--HHHHHHHcCCCeeecCC
Q psy15362 126 RGQLADVCL---DTPLC--NGHT--TSMDVLWTGTPVVTLPG 160 (200)
Q Consensus 126 ~~~~aDv~l---~~~~~--~~g~--~~lEAma~G~PVV~~~g 160 (200)
.+..||+.| +++.- -.|+ -+-=|.|-|+||+.+.-
T Consensus 65 ~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~~~ 106 (172)
T COG3613 65 LIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAYRK 106 (172)
T ss_pred HHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEEee
Confidence 467899986 45541 1343 36668899999998643
No 382
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.17 E-value=1.6e+02 Score=26.26 Aligned_cols=51 Identities=10% Similarity=0.208 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHHH---HHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANIQ---ATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l~---~~~~~~gl~~~rv~f~g~~~ 119 (200)
..+.+++..+.+..|+..+ +|+|.++...+.++ ++++++++ +++++..+.|
T Consensus 282 ~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~~~tl~~i~~l~~--~~~~~~~~sp 338 (439)
T PRK14328 282 EYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDFEETLDLVKEVRY--DSAFTFIYSK 338 (439)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCC--CcccceEecC
Confidence 5688888888888888643 78887655555444 46666665 5666665544
No 383
>PLN02527 aspartate carbamoyltransferase
Probab=31.05 E-value=3.3e+02 Score=23.12 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=57.2
Q ss_pred eCeeecccccccccCCCCCCCCCCCchh---hhhhhhhcCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEE
Q psy15362 12 NGIVLQNGLATNQTNTKTATGEEVPQSI---VITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLL 88 (200)
Q Consensus 12 ~gi~i~ng~~~~~~~~~~~~~~~~~~~~---~~~~R~~l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~iv 88 (200)
..+|+.|+-+.+... |.+. ...+++++|- -+.+.++.+|... + ......+..++.+.+++.+.++
T Consensus 117 ~~vPVINa~~g~~~H---------PtQ~LaDl~Ti~e~~g~-l~g~kva~vGD~~-~-~rv~~Sl~~~~~~~~g~~v~~~ 184 (306)
T PLN02527 117 AEIPVINAGDGPGQH---------PTQALLDVYTIQREIGR-LDGIKVGLVGDLA-N-GRTVRSLAYLLAKYEDVKIYFV 184 (306)
T ss_pred CCCCEEECCCCCCCC---------hHHHHHHHHHHHHHhCC-cCCCEEEEECCCC-C-ChhHHHHHHHHHhcCCCEEEEE
Confidence 457888887654332 2221 2456666662 2234455555432 1 1245666666666777899998
Q ss_pred cCCcc-cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeC
Q psy15362 89 KFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT 136 (200)
Q Consensus 89 G~~~~-~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~ 136 (200)
+..+. ..+.+.+.+++.|.. +.+.. +....++.||++...
T Consensus 185 ~P~~~~~~~~~~~~~~~~g~~---~~~~~-----d~~~a~~~aDvvyt~ 225 (306)
T PLN02527 185 APDVVKMKDDIKDYLTSKGVE---WEESS-----DLMEVASKCDVLYQT 225 (306)
T ss_pred CCCccCCCHHHHHHHHHcCCE---EEEEc-----CHHHHhCCCCEEEEC
Confidence 85331 124555566655542 44432 333456789988654
No 384
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=31.00 E-value=3.5e+02 Score=23.38 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=22.0
Q ss_pred ccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 130 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 130 aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
=|+++..-+...-..+.||.-+|+|||+..
T Consensus 153 Pd~viv~d~~~e~~AI~EA~kl~IPvIaiv 182 (326)
T PRK12311 153 PDLLFVIDTNKEDIAIQEAQRLGIPVAAIV 182 (326)
T ss_pred CCEEEEeCCccchHHHHHHHHcCCCEEEEe
Confidence 455554444444688999999999999863
No 385
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=30.85 E-value=2.8e+02 Score=23.53 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH-cCCCeeecCCCcch-h--hhHHHH
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETLA-S--RVAASQ 171 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g~~~~-~--r~~~~~ 171 (200)
+.|++.-++.|+. +.+.-...+++......+|++=.+..-..-..+++|.+ +|+||....|.... + ...+.-
T Consensus 77 ~iL~~vk~~~glp----vvTeV~~~~q~~~vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaek 152 (290)
T PLN03033 77 KILEKVKVAYDLP----IVTDVHESSQCEAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEK 152 (290)
T ss_pred HHHHHHHHHHCCc----eEEeeCCHHHHHHHHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHH
Confidence 3456667788986 66666666777777778999955543223345665555 89999999886541 1 122233
Q ss_pred HhhcCCCcc
Q psy15362 172 LATLGCPEL 180 (200)
Q Consensus 172 ~~~~g~~~~ 180 (200)
+...|.+.+
T Consensus 153 i~~~GN~~v 161 (290)
T PLN03033 153 VRLAGNPNV 161 (290)
T ss_pred HHHcCCCcE
Confidence 344565553
No 386
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=30.84 E-value=88 Score=23.60 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccc----ccEE-EeCCCCC-CchHHHHHHH-cCCCeee
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL----ADVC-LDTPLCN-GHTTSMDVLW-TGTPVVT 157 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~----aDv~-l~~~~~~-~g~~~lEAma-~G~PVV~ 157 (200)
+.+++.++++|++ +.|.-.=...++..+++. +|-+ ++|--|+ .+..+.+|+. .++|+|=
T Consensus 32 ~~~~~~a~~~g~~---v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vE 97 (140)
T PF01220_consen 32 QKCKETAAELGVE---VEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVE 97 (140)
T ss_dssp HHHHHHHHHTTEE---EEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEE
T ss_pred HHHHHHHHHCCCe---EEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEE
Confidence 3566677777775 666443333455555433 4655 6776554 3678999987 7999994
No 387
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=30.80 E-value=1.5e+02 Score=19.11 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=35.9
Q ss_pred EEEEEcCCcccH-HHHHHHHHHcCCCCCcEEEeccCCHHHHHhh-cccccEEEeCCCCCCchHHHHHHHcCCCeee
Q psy15362 84 ILWLLKFPAVGE-ANIQATAQALGLDQHRILFSNVAAKEEHVRR-GQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 157 (200)
Q Consensus 84 ~l~ivG~~~~~~-~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~-~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~ 157 (200)
+.+++++.|... ..++..+++. +. +. .+...++..++... ....|+++.+.+.. ..+.|||.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~-~~-~~-~~v~~~~~~~~~~~~~~~~DlIitT~~l~---------~~~~pvi~ 65 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKL-FP-EI-EIIDVISLRELEEVDLDDYDLIISTVPLE---------DTDKPVIV 65 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHH-CC-Cc-eEEEEEeHHHHhhCcccCCCEEEEccccC---------CCCCCEEE
Confidence 355666544333 3455555553 22 22 22456666666665 57899999887632 34689885
No 388
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.10 E-value=1.7e+02 Score=23.93 Aligned_cols=76 Identities=20% Similarity=0.071 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCC---------CcEEEeccCCHHHHHhhc-----ccccEEEeCC-CCCCchHHHHHH--HcCCCeeecC
Q psy15362 97 NIQATAQALGLDQ---------HRILFSNVAAKEEHVRRG-----QLADVCLDTP-LCNGHTTSMDVL--WTGTPVVTLP 159 (200)
Q Consensus 97 ~l~~~~~~~gl~~---------~rv~f~g~~~~~~~~~~~-----~~aDv~l~~~-~~~~g~~~lEAm--a~G~PVV~~~ 159 (200)
...+++++.|++- |+.. .|++++....++- ..+|....+. -. -+.-+++.| ..|+|||+++
T Consensus 134 ~e~ef~~~~Gfeiv~~~~Lgi~dn~e-igr~~P~~~y~lAk~~~~~~~DaiFiSCTnl-Rt~eii~~lE~~~G~PVvsSN 211 (238)
T COG3473 134 REIEFLEANGFEIVDFKGLGITDNLE-IGRQEPWAVYRLAKEVFTPDADAIFISCTNL-RTFEIIEKLERDTGVPVVSSN 211 (238)
T ss_pred HHHHHHHhCCeEEEEeeccCCcccch-hcccChHHHHHHHHHhcCCCCCeEEEEeecc-ccHHHHHHHHHHhCCceeecc
Confidence 3455666666532 3333 3455544444332 2356554332 11 122244443 6899999976
Q ss_pred CCcchhhhHHHHHhhcCCCc
Q psy15362 160 GETLASRVAASQLATLGCPE 179 (200)
Q Consensus 160 g~~~~~r~~~~~~~~~g~~~ 179 (200)
... ....++..|+.+
T Consensus 212 ~AT-----~W~~Lr~~g~~~ 226 (238)
T COG3473 212 QAT-----LWMALRLIGLRE 226 (238)
T ss_pred HHH-----HHHHHHHcCCcc
Confidence 432 123355556554
No 389
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=30.05 E-value=3e+02 Score=22.37 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCC
Q psy15362 66 DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP 137 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~ 137 (200)
.+.+++.|++ ..++.--+=+- ....-.++-++++++|+. --|.|-+..|-+.+..++..+|+.+.-+
T Consensus 73 p~~~i~~fa~---agad~It~H~E-~~~~~~r~i~~Ik~~G~k-aGv~lnP~Tp~~~i~~~l~~vD~VllMs 139 (220)
T COG0036 73 PDRYIEAFAK---AGADIITFHAE-ATEHIHRTIQLIKELGVK-AGLVLNPATPLEALEPVLDDVDLVLLMS 139 (220)
T ss_pred HHHHHHHHHH---hCCCEEEEEec-cCcCHHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHhhCCEEEEEe
Confidence 3455565553 33443332222 223446777899999997 7899999999889998999999996443
No 390
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=30.02 E-value=1.6e+02 Score=25.59 Aligned_cols=55 Identities=4% Similarity=-0.162 Sum_probs=31.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCC
Q psy15362 83 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN 140 (200)
Q Consensus 83 ~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~ 140 (200)
-++.|+|+.|..-..+...+++.|.. |+..+..+.++.......||+++.+.|..
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~---V~~~d~~~~~~~~~~~~~aDlVilavP~~ 153 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQ---VRILEQDDWDRAEDILADAGMVIVSVPIH 153 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCe---EEEeCCCcchhHHHHHhcCCEEEEeCcHH
Confidence 46778873233334565666666653 66666544334444566788887665543
No 391
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=30.01 E-value=3.7e+02 Score=24.20 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHH-HH--CCCcEEEEEcCCc--ccHHHHHHHHHHcCCCCCcEEE-----------------eccCCHH
Q psy15362 64 KIDPSTLQMWVNVL-KA--VPNSILWLLKFPA--VGEANIQATAQALGLDQHRILF-----------------SNVAAKE 121 (200)
Q Consensus 64 K~~~~~l~a~~~i~-~~--~p~~~l~ivG~~~--~~~~~l~~~~~~~gl~~~rv~f-----------------~g~~~~~ 121 (200)
.+++..++++.+-+ .. .|+-++=|+|+-. .+-++++++++..|+. -++++ .|..+.+
T Consensus 145 ~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~-vn~l~d~~~~d~~~~~~~~~~~~g~ts~~ 223 (457)
T TIGR02932 145 TGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVD-ANILMDTEDFDSPMLPDKSIFTHGRTTVE 223 (457)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCC-EEEEeccccccCCCCCCccccCCCCCCHH
Confidence 45555665555432 21 2334566666311 2346899999999997 33332 3445567
Q ss_pred HHHhhcccccEEEeCCCCCCchHHHHHHH--cCCCeeec
Q psy15362 122 EHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVTL 158 (200)
Q Consensus 122 ~~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~PVV~~ 158 (200)
++..+ ..|.+-+.-.++. |..+.|.|. .|+|-+..
T Consensus 224 ~i~~~-~~A~~nlv~~~~~-g~~~A~~Lee~fGiPy~~~ 260 (457)
T TIGR02932 224 DIADS-ANAIATLALAKYE-GGNTAEFLQETFDVPSILV 260 (457)
T ss_pred HHHhh-hhCcEEEEEcccc-hHHHHHHHHHHHCCCeecc
Confidence 77764 5565555434432 355666665 69998754
No 392
>PRK12862 malic enzyme; Reviewed
Probab=29.73 E-value=3.1e+02 Score=26.69 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc-----------CCH-----------HHHHhh
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-----------AAK-----------EEHVRR 126 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~-----------~~~-----------~~~~~~ 126 (200)
++.++...-+...+.++++.|-| ..--.+-+++...|+..+|+++... ++. ..+...
T Consensus 180 l~~a~~~~~~~~~~~~iv~~GaG-aag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~ 258 (763)
T PRK12862 180 LLNGLKLVGKDIEDVKLVASGAG-AAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEV 258 (763)
T ss_pred HHHHHHHhCCChhhcEEEEEChh-HHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHH
Confidence 33444433344568999999864 3223345555567885357777662 111 123444
Q ss_pred cccccEEEeCCCCCC--chHHHHHHHcCCCeee
Q psy15362 127 GQLADVCLDTPLCNG--HTTSMDVLWTGTPVVT 157 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~--g~~~lEAma~G~PVV~ 157 (200)
+..+|+|+-.|. .+ .--++++|+ .-|+|-
T Consensus 259 ~~~~~v~iG~s~-~g~~~~~~v~~M~-~~piif 289 (763)
T PRK12862 259 IEGADVFLGLSA-AGVLKPEMVKKMA-PRPLIF 289 (763)
T ss_pred HcCCCEEEEcCC-CCCCCHHHHHHhc-cCCEEE
Confidence 566899987665 33 346999998 889994
No 393
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=29.62 E-value=3.5e+02 Score=22.89 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCCCCcEEEecc-----CCHHHHHhhccc---ccEE---EeCCCCCCchHHHHHHH--cCCCeeec-CCCc
Q psy15362 97 NIQATAQALGLDQHRILFSNV-----AAKEEHVRRGQL---ADVC---LDTPLCNGHTTSMDVLW--TGTPVVTL-PGET 162 (200)
Q Consensus 97 ~l~~~~~~~gl~~~rv~f~g~-----~~~~~~~~~~~~---aDv~---l~~~~~~~g~~~lEAma--~G~PVV~~-~g~~ 162 (200)
.+-.++.+.|+.-.+++=+|. ++..|+..++.. ..+. +.+..... -...+-++ .++|||+. .|.+
T Consensus 160 ~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~-~~a~~~~~~~~~KPVV~lk~Grs 238 (291)
T PRK05678 160 EAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAE-EEAAEYIKANVTKPVVGYIAGVT 238 (291)
T ss_pred HHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHH-HHHHHHHHHcCCCCEEEEEecCC
Confidence 456677777775466777775 345777776632 2232 33221110 12233333 48999986 3432
Q ss_pred c-----hhhhHH-------------HHHhhcCCCcceecCHHHHHHHHHHhhc
Q psy15362 163 L-----ASRVAA-------------SQLATLGCPELIARTHKEYQDIAIRLGT 197 (200)
Q Consensus 163 ~-----~~r~~~-------------~~~~~~g~~~~ia~~~~~yv~~a~~l~~ 197 (200)
- .++.|+ +.++..|+ ..+++.+++.+.+.++.+
T Consensus 239 ~~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gv--i~v~~~~el~~~~~~~~~ 289 (291)
T PRK05678 239 APPGKRMGHAGAIISGGKGTAEEKKEALEAAGV--KVARTPSEIGELLKEVLK 289 (291)
T ss_pred CCCCCcccchhhhccCCCCCHHHHHHHHHHCCC--eECCCHHHHHHHHHHHHc
Confidence 2 111111 33445555 567899999998887764
No 394
>KOG1387|consensus
Probab=29.55 E-value=3.1e+02 Score=24.37 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCCCEEEEEeCCC---CC-CCHHHHHHHHHHHHHCCCcEEEEEcCC-cccHHHHHHHHHH-cCC--CCCcEEEec--c--
Q psy15362 50 PEDAIVYCNFNQL---YK-IDPSTLQMWVNVLKAVPNSILWLLKFP-AVGEANIQATAQA-LGL--DQHRILFSN--V-- 117 (200)
Q Consensus 50 ~~~~~v~~~~~r~---~K-~~~~~l~a~~~i~~~~p~~~l~ivG~~-~~~~~~l~~~~~~-~gl--~~~rv~f~g--~-- 117 (200)
+++..++|++.-. .- +-..+-.|+....++.||.+.++..+. +...+.+-+.+++ .++ ++|+|.|.- .
T Consensus 40 ~k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~ 119 (465)
T KOG1387|consen 40 EKNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRY 119 (465)
T ss_pred hhhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeee
Confidence 4555666665432 22 223466777778899999998886532 2345555555553 344 457777642 1
Q ss_pred -CCHH-----------------HHHhhccc-ccEEEeCCCCCCchHHHHHHHcCCCeeec
Q psy15362 118 -AAKE-----------------EHVRRGQL-ADVCLDTPLCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 118 -~~~~-----------------~~~~~~~~-aDv~l~~~~~~~g~~~lEAma~G~PVV~~ 158 (200)
+... .+-++++. -|||+||--|.+...+.-. -.+.||+++
T Consensus 120 lVea~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~-l~~~~V~aY 178 (465)
T KOG1387|consen 120 LVEASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIFRR-LRRIPVVAY 178 (465)
T ss_pred eeecccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHHHH-HccCceEEE
Confidence 1100 11112222 3999998666555555554 678999986
No 395
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=29.52 E-value=1.5e+02 Score=18.63 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCeeec
Q psy15362 95 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 95 ~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV~~ 158 (200)
..++++.+.+.++. ..+. ..+..++ ......|+++.+.+.. ....++|++..
T Consensus 17 ~~~l~~~~~~~~~~-~~~~---~~~~~~~-~~~~~~dliitt~~~~-------~~~~~~p~~~i 68 (84)
T cd00133 17 AEKLEKAAKELGIE-VKVE---AQGLSEV-IDLADADLIISTVPLA-------ARFLGKPVIVV 68 (84)
T ss_pred HHHHHHHHHHCCCe-EEEE---Ecccchh-hhcCCccEEEECCccc-------cccCCCcEEEE
Confidence 35778888887774 3232 2222332 2357889999887632 34567888764
No 396
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=29.40 E-value=2.1e+02 Score=20.28 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=41.6
Q ss_pred hhhhhhcCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcC-CcccHHHHHHHHHHcCCCCCcEEEeccCC
Q psy15362 41 ITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKF-PAVGEANIQATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~-~~~~~~~l~~~~~~~gl~~~rv~f~g~~~ 119 (200)
..+.++||++.-..+ | |-.-++-.-++.+.|.-. ++-+ ..++-..|..++++.|+. |...+..|
T Consensus 26 ~~i~~~~gI~diN~I--------K--PGIgEaTRvLLRRvP~~v--LVr~~~~pd~~Hl~~LA~ekgVp---Ve~~~d~~ 90 (100)
T PF15608_consen 26 ERIAERYGISDINLI--------K--PGIGEATRVLLRRVPWKV--LVRDPDDPDLAHLLLLAEEKGVP---VEVYPDLP 90 (100)
T ss_pred HHHHHHhCCCCcccc--------c--CChhHHHHHHHhcCCCEE--EECCCCCccHHHHHHHHHHcCCc---EEEeCCCC
Confidence 566778998763333 2 223355556788999633 3333 235567889999999997 77777664
No 397
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=29.33 E-value=1.6e+02 Score=26.58 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHH----HHHhh--cccccEEEeC
Q psy15362 66 DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKE----EHVRR--GQLADVCLDT 136 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~----~~~~~--~~~aDv~l~~ 136 (200)
.+..+++..+.+++.. +..+++|+ ++.++++++++|++.+++.+...-..+ .-..+ ...+|.++..
T Consensus 186 d~~vl~Aa~~a~~~~~-~~~iLvG~----~~~I~~~~~~~g~~~~~~eIi~~~~~~~s~~~a~~lv~~G~aD~~v~G 257 (466)
T PRK08190 186 DAESLRGALEAAEAGL-IEPVLVGP----EAKIRAAAEEAGLDLSGVRIVDVPHSHAAAARAVALARAGEVEALMKG 257 (466)
T ss_pred CHHHHHHHHHHHHcCC-eeEEEECC----HHHHHHHHHHcCCCcCCCEEECCCCCHHHHHHHHHHHHCCCCCEEEeC
Confidence 4678898888887765 88999985 367899999988865677776653211 11112 2468999854
No 398
>PRK08328 hypothetical protein; Provisional
Probab=29.23 E-value=1.8e+02 Score=23.47 Aligned_cols=45 Identities=18% Similarity=0.020 Sum_probs=29.6
Q ss_pred eccCCHHHHHhhcccccEEEeCCCCCCchHHHH--HHHcCCCeeecC
Q psy15362 115 SNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMD--VLWTGTPVVTLP 159 (200)
Q Consensus 115 ~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lE--Ama~G~PVV~~~ 159 (200)
.+.+..+....+++.+|+++++.........+. +...|+|+|...
T Consensus 104 ~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~ 150 (231)
T PRK08328 104 VGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGA 150 (231)
T ss_pred eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 334444555667889999998754322233555 778999999753
No 399
>PRK05953 precorrin-8X methylmutase; Validated
Probab=28.90 E-value=3.1e+02 Score=22.11 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCC
Q psy15362 64 KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLD 108 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~ 108 (200)
++.-.-..++....+..++. ++.+|..+...-++-+++++.+..
T Consensus 102 ~g~TRs~aam~~a~~~~~g~-IvvIGNAPTAL~~l~~li~~g~~~ 145 (208)
T PRK05953 102 KEKTRTAWGIETLARRYPEA-IFVIGQSQTALTALVELVEAEEIR 145 (208)
T ss_pred cccCHHHHHHHHHHHHCCCC-EEEEeCcHHHHHHHHHHHHhcCCC
Confidence 33333344444455555666 666675332334455666665554
No 400
>PRK11524 putative methyltransferase; Provisional
Probab=28.89 E-value=1.2e+02 Score=25.20 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=25.4
Q ss_pred cccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 129 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
.-|++||||- ++|+|.+-|.-+|.=.|...
T Consensus 208 ~GD~VLDPF~-GSGTT~~AA~~lgR~~IG~E 237 (284)
T PRK11524 208 PGDIVLDPFA-GSFTTGAVAKASGRKFIGIE 237 (284)
T ss_pred CCCEEEECCC-CCcHHHHHHHHcCCCEEEEe
Confidence 4699999875 56999999999999999864
No 401
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.70 E-value=3.6e+02 Score=22.81 Aligned_cols=69 Identities=10% Similarity=-0.007 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHCC----CcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCC
Q psy15362 66 DPSTLQMWVNVLKAVP----NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL 138 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p----~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~ 138 (200)
.|-.-.+..++++.++ +.+.+++|.+.---.-+..+..+.|. .|+...+.. .++..+.+.||+++.+..
T Consensus 138 ~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga---tVtv~~s~t-~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 138 VPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA---SVTILHSRS-KDMASYLKDADVIVSAVG 210 (286)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC---eEEEEeCCc-hhHHHHHhhCCEEEECCC
Confidence 4556677777777753 68999999754122335555555554 366666644 356677899999997653
No 402
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=28.69 E-value=3.4e+02 Score=22.50 Aligned_cols=109 Identities=14% Similarity=0.213 Sum_probs=66.6
Q ss_pred cEEEEEcCCcccHHHH-----HHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC---chHHHHHHHcCCC
Q psy15362 83 SILWLLKFPAVGEANI-----QATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG---HTTSMDVLWTGTP 154 (200)
Q Consensus 83 ~~l~ivG~~~~~~~~l-----~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~---g~~~lEAma~G~P 154 (200)
.+..++|.| |+.+.| ++++++. +-|++.|.+-+.|++.+.+.--=.+++...+- --.+..|-..|+=
T Consensus 3 ~~VyFIGAG-PGdpdLiTvkg~~ll~~a----dvviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~ 77 (254)
T COG2875 3 MKVYFIGAG-PGDPDLITVKGQRLLEKA----DVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKD 77 (254)
T ss_pred ceEEEEccC-CCCcceeeehHHHHHhhC----CEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCe
Confidence 456778853 444433 3566553 66899999766777775433222344433221 1236678889999
Q ss_pred eee-cCCCcch-hhh--HHHHHhhcCCCcceecCHHHHHHHHHHhh
Q psy15362 155 VVT-LPGETLA-SRV--AASQLATLGCPELIARTHKEYQDIAIRLG 196 (200)
Q Consensus 155 VV~-~~g~~~~-~r~--~~~~~~~~g~~~~ia~~~~~yv~~a~~l~ 196 (200)
|+= ..|+... +-+ .-.-++..|++--+..+...|.+.|..|.
T Consensus 78 VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~ 123 (254)
T COG2875 78 VVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALG 123 (254)
T ss_pred EEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhC
Confidence 984 4565421 111 12346788999888888888888887764
No 403
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=28.64 E-value=2.8e+02 Score=23.29 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=24.1
Q ss_pred HhhcccccEEEeCC-CCCCchHHHHHHHcCCCeee-cCC
Q psy15362 124 VRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVT-LPG 160 (200)
Q Consensus 124 ~~~~~~aDv~l~~~-~~~~g~~~lEAma~G~PVV~-~~g 160 (200)
......+|+++|=+ |...-..+-.|..+|+|.|. +.|
T Consensus 64 ~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTG 102 (266)
T COG0289 64 LLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 102 (266)
T ss_pred hhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCC
Confidence 33456899999844 43323346667889998885 555
No 404
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.56 E-value=3.4e+02 Score=22.39 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=61.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHcC-CCCCcEEEeccCC-H-HHHHhhccc-ccEEE--eCCCCCCchHHHHHHHcCCCe
Q psy15362 82 NSILWLLKFPAVGEANIQATAQALG-LDQHRILFSNVAA-K-EEHVRRGQL-ADVCL--DTPLCNGHTTSMDVLWTGTPV 155 (200)
Q Consensus 82 ~~~l~ivG~~~~~~~~l~~~~~~~g-l~~~rv~f~g~~~-~-~~~~~~~~~-aDv~l--~~~~~~~g~~~lEAma~G~PV 155 (200)
.-.++|+|.+|.++..+-+.+..+. ++..+|.+-|... . .++..+=+. .-+|= +-|| -++++|=..-+ |+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP---HlTvleNv~la-p~ 103 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP---HLTVLENVTLA-PV 103 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccc---cchHHHHHHhh-hH
Confidence 4456677766667777777666553 2235677767322 1 122221111 11221 1122 25667665544 33
Q ss_pred eec-CCCcchhhhHHHHHhhcCCCc-------ceecCHHHHHHHHHHhhcCCC
Q psy15362 156 VTL-PGETLASRVAASQLATLGCPE-------LIARTHKEYQDIAIRLGTDRD 200 (200)
Q Consensus 156 V~~-~g~~~~~r~~~~~~~~~g~~~-------~ia~~~~~yv~~a~~l~~d~e 200 (200)
.+. -...-+...+..++...|+.+ -+-.+....+++|-+|+.+|+
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCC
Confidence 332 222223344556777777765 234577888999999998875
No 405
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=28.54 E-value=69 Score=24.77 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=18.3
Q ss_pred ccEEEeCCCCCCchHHHHHHHcCCCee
Q psy15362 130 ADVCLDTPLCNGHTTSMDVLWTGTPVV 156 (200)
Q Consensus 130 aDv~l~~~~~~~g~~~lEAma~G~PVV 156 (200)
-|.++||+- +.|+.++||..++..+.
T Consensus 29 ~~~vlDP~C-GsGtiliEaa~~~~~~~ 54 (179)
T PF01170_consen 29 GDVVLDPFC-GSGTILIEAALMGANIP 54 (179)
T ss_dssp TS-EEETT--TTSHHHHHHHHHHTTTS
T ss_pred CCEEeecCC-CCCHHHHHHHHHhhCcc
Confidence 478999863 56999999977666555
No 406
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=28.33 E-value=1.1e+02 Score=26.18 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=41.1
Q ss_pred hhcCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCC---cEEEEEcCCc-ccHHHHHHHHHHcCCC
Q psy15362 45 QQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPN---SILWLLKFPA-VGEANIQATAQALGLD 108 (200)
Q Consensus 45 ~~l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~---~~l~ivG~~~-~~~~~l~~~~~~~gl~ 108 (200)
+.+||++..++...+|...++...-.+-|.+..++.|+ .++.+=-+.- ..-+.+-.+++++++.
T Consensus 165 ~~mgl~~Rs~~~lhlgg~~gGK~~~~eqf~kni~~LP~~vksRl~LENDd~sYs~eelL~lCek~~iP 232 (347)
T COG4294 165 DGMGLAERSVWNLHLGGTHGGKKERLEQFIKNIQRLPDSVKSRLTLENDDKSYSTEELLPLCEKLNIP 232 (347)
T ss_pred hhcCCCcCCceEEEeccccCCchhHHHHHHHHHhhcCHHHHHhheeecccccccHHHHHHHHHHhCCC
Confidence 45688887777777777777766677777777777775 3444422110 1235677788888875
No 407
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=28.27 E-value=3.3e+02 Score=24.10 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=49.2
Q ss_pred cEEEEEcCCc--ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHH--HcCCCeeec
Q psy15362 83 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVTL 158 (200)
Q Consensus 83 ~~l~ivG~~~--~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAm--a~G~PVV~~ 158 (200)
-.+-|+|+.. .+..+++++++++|+. -+..|.|..+.+++.. +..|.+-+..++..+ ..+.+.| -.|+|-+..
T Consensus 173 ~~VNiiG~~~~~~d~~el~~lL~~~Gi~-v~~~~~~~~t~eei~~-~~~A~lniv~~~~~~-~~~a~~Le~~fGiP~~~~ 249 (421)
T cd01976 173 YDVNIIGDYNIGGDAWASRILLEEMGLR-VVAQWSGDGTLNEMEN-AHKAKLNLIHCYRSM-NYIARMMEEKYGIPWMEY 249 (421)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHh-cccCCEEEEECcHHH-HHHHHHHHHHhCCcEEec
Confidence 4566777422 2346799999999997 5667888888888875 556666665444332 2345555 379999875
No 408
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=28.06 E-value=2.4e+02 Score=20.61 Aligned_cols=61 Identities=10% Similarity=0.157 Sum_probs=36.8
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCcEEEEEcCCc-ccHHHHHHHHHHcCCCCCcEEEecc
Q psy15362 53 AIVYCNFNQLYKIDPSTLQMWVNVLKA--VPNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNV 117 (200)
Q Consensus 53 ~~v~~~~~r~~K~~~~~l~a~~~i~~~--~p~~~l~ivG~~~-~~~~~l~~~~~~~gl~~~rv~f~g~ 117 (200)
..+-+.++|-. ...++.+.++.+. .|+..++.+|... ...+.++++++..+-. .+|+|.+.
T Consensus 24 ~~i~a~~g~~~---~~~~~~l~~~~~~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~~~-~~ivlv~~ 87 (150)
T cd01840 24 IQIDAKVGRQM---SEAPDLIRQLKDSGKLRKTVVIGLGTNGPFTKDQLDELLDALGPD-RQVYLVNP 87 (150)
T ss_pred CEEEeeecccH---HHHHHHHHHHHHcCCCCCeEEEEecCCCCCCHHHHHHHHHHcCCC-CEEEEEEC
Confidence 44545555432 3445555555443 5777877788532 2467888888887643 56777654
No 409
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.05 E-value=2.5e+02 Score=24.93 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHHH---HHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANIQ---ATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l~---~~~~~~gl~~~rv~f~g~~~ 119 (200)
+.+++++.++.+..|+..+ +|+|.++...+.++ +++++.+. +++++.-+.|
T Consensus 265 ~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~--~~~~~f~~sp 321 (420)
T PRK14339 265 EWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRF--EQIFSFKYSP 321 (420)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCC--CEEeeEecCC
Confidence 5678888888888888653 78887655554444 56666665 5555544544
No 410
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=28.04 E-value=3.2e+02 Score=24.59 Aligned_cols=92 Identities=11% Similarity=0.057 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHH-HHH-HCCCcEEEEEcCCc--ccHHHHHHHHHHcCCCCCcEEE-----------------eccCCHHH
Q psy15362 64 KIDPSTLQMWVN-VLK-AVPNSILWLLKFPA--VGEANIQATAQALGLDQHRILF-----------------SNVAAKEE 122 (200)
Q Consensus 64 K~~~~~l~a~~~-i~~-~~p~~~l~ivG~~~--~~~~~l~~~~~~~gl~~~rv~f-----------------~g~~~~~~ 122 (200)
.+++..++++.+ +.. ..|+-++-|+|+-. .+.+++++++++.|++ =+++| .|..+.++
T Consensus 142 ~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~-v~~~~d~~~~d~~~~~~~~~~~~g~~~~~~ 220 (454)
T cd01973 142 TGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVE-ANILMDTEDFDSPMLPDKSAVTHGNTTIED 220 (454)
T ss_pred HHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCC-EEEeeccccccCCCCCcccccCCCCCCHHH
Confidence 345555555543 221 12344566666311 2347899999999997 44443 33455567
Q ss_pred HHhhcccccEEEeCCCCCCchHHHHHHH--cCCCeeec
Q psy15362 123 HVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVTL 158 (200)
Q Consensus 123 ~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~PVV~~ 158 (200)
+... ..|.+-+.-+++ .|..+.+.|. +|+|.+..
T Consensus 221 i~~~-~~A~~niv~~~~-~~~~~A~~Le~~fGiPyi~~ 256 (454)
T cd01973 221 IADS-ANAIATIALARY-EGGKAAEFLQKKFDVPAILG 256 (454)
T ss_pred HHHh-hhCcEEEEEChh-hhHHHHHHHHHHHCCCeecc
Confidence 7653 444555443333 2345555554 69999854
No 411
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.86 E-value=1.3e+02 Score=25.36 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=40.9
Q ss_pred hhcCCCCCCEEEEEeCCCCCCCHHH-HHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEe
Q psy15362 45 QQYGLPEDAIVYCNFNQLYKIDPST-LQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS 115 (200)
Q Consensus 45 ~~l~l~~~~~v~~~~~r~~K~~~~~-l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~ 115 (200)
++.|.+-=++-||++...+|. +.+ ++.+.+|.+.. +.-|++-|+++...+.+++.+ ++|+ .+|-+-
T Consensus 163 ~~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l~~I~~~~-~vPLVlHGgSG~~~e~~~~ai-~~Gi--~KiNi~ 229 (283)
T PRK07998 163 ERTGCDMLAVSIGNVHGLEDI-PRIDIPLLKRIAEVS-PVPLVIHGGSGIPPEILRSFV-NYKV--AKVNIA 229 (283)
T ss_pred HHhCcCeeehhccccccCCCC-CCcCHHHHHHHHhhC-CCCEEEeCCCCCCHHHHHHHH-HcCC--cEEEEC
Confidence 344554323445555556666 433 67777887765 678999997665566676554 4588 455543
No 412
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=27.39 E-value=1.2e+02 Score=21.84 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=28.1
Q ss_pred CCCCHHH--HHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc--CCHHHHHhhcccccEEEe
Q psy15362 63 YKIDPST--LQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV--AAKEEHVRRGQLADVCLD 135 (200)
Q Consensus 63 ~K~~~~~--l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~--~~~~~~~~~~~~aDv~l~ 135 (200)
.|..+.. +++.....+..++..+++-|+ +...+.++ .++++|.. |++.+. ...+++ .+.||=|+.
T Consensus 76 k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD-~Df~~~v~-~l~~~g~~---V~v~~~~~~~s~~L---~~~ad~f~~ 144 (146)
T PF01936_consen 76 KKGVDVALAVDILELAYENPPDTIVLVSGD-SDFAPLVR-KLRERGKR---VIVVGAEDSASEAL---RSAADEFIS 144 (146)
T ss_dssp S---HHHHHHHHHHHG--GG-SEEEEE----GGGHHHHH-HHHHH--E---EEEEE-GGGS-HHH---HHHSSEEEE
T ss_pred cCCcHHHHHHHHHHHhhccCCCEEEEEECc-HHHHHHHH-HHHHcCCE---EEEEEeCCCCCHHH---HHhcCEEEe
Confidence 3445432 355555544555666666554 34444444 45566764 777773 122343 468887763
No 413
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.37 E-value=2.8e+02 Score=21.01 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccCC-HHHHHhhc--ccccEEEeCCCCCCchH----HHHHHH-cCCCeee-cCCCcc-h
Q psy15362 95 EANIQATAQALGLDQHRILFSNVAA-KEEHVRRG--QLADVCLDTPLCNGHTT----SMDVLW-TGTPVVT-LPGETL-A 164 (200)
Q Consensus 95 ~~~l~~~~~~~gl~~~rv~f~g~~~-~~~~~~~~--~~aDv~l~~~~~~~g~~----~lEAma-~G~PVV~-~~g~~~-~ 164 (200)
..-+.+..+..|.+ |+.+|-.. .+|+.... ..+|+...|+..++..+ +.|++. .|.--|. ..|... .
T Consensus 29 akvia~~l~d~Gfe---Vi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~ 105 (143)
T COG2185 29 AKVIARALADAGFE---VINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPP 105 (143)
T ss_pred hHHHHHHHHhCCce---EEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCc
Confidence 35678899999997 88888754 67776654 66899988887766543 677775 6766555 444332 2
Q ss_pred hhhHHHHHhhcCCCccee--cCHHHHHHHH
Q psy15362 165 SRVAASQLATLGCPELIA--RTHKEYQDIA 192 (200)
Q Consensus 165 ~r~~~~~~~~~g~~~~ia--~~~~~yv~~a 192 (200)
+. .-.++++|..+.+. .+..+.++..
T Consensus 106 ~d--~~~l~~~G~~~if~pgt~~~~~~~~v 133 (143)
T COG2185 106 GD--YQELKEMGVDRIFGPGTPIEEALSDL 133 (143)
T ss_pred hh--HHHHHHhCcceeeCCCCCHHHHHHHH
Confidence 22 23466778887665 3344444333
No 414
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=27.35 E-value=93 Score=23.51 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCCCcEEEec
Q psy15362 96 ANIQATAQALGLDQHRILFSN 116 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g 116 (200)
++.++.+.+.|++++||+.+|
T Consensus 146 e~~~~~l~~~Gi~~~~I~vtG 166 (169)
T PF06925_consen 146 EEVKEELIERGIPPERIHVTG 166 (169)
T ss_pred HHHHHHHHHcCCChhHEEEeC
Confidence 567777777999989999988
No 415
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=27.11 E-value=85 Score=24.85 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=9.3
Q ss_pred HHHHHHHHHCCCcEEEE
Q psy15362 71 QMWVNVLKAVPNSILWL 87 (200)
Q Consensus 71 ~a~~~i~~~~p~~~l~i 87 (200)
+-+.++.++.++.++..
T Consensus 150 ~~l~~l~~~~~~~~~~~ 166 (232)
T cd06212 150 EEIAALGEKIPDFTFIP 166 (232)
T ss_pred HHHHHHHHhCCCEEEEE
Confidence 44444555567766543
No 416
>PRK06886 hypothetical protein; Validated
Probab=26.89 E-value=4.1e+02 Score=22.82 Aligned_cols=94 Identities=11% Similarity=0.056 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHCC-CcEEEEEcCCc-ccHHHH---HHHHHHcCCCCCcEEEeccC-----CH---HHHHhhccccc
Q psy15362 65 IDPSTLQMWVNVLKAVP-NSILWLLKFPA-VGEANI---QATAQALGLDQHRILFSNVA-----AK---EEHVRRGQLAD 131 (200)
Q Consensus 65 ~~~~~l~a~~~i~~~~p-~~~l~ivG~~~-~~~~~l---~~~~~~~gl~~~rv~f~g~~-----~~---~~~~~~~~~aD 131 (200)
..+..++.+.++.+++. .+.+-+ .+.. +....+ .+...+.|+. .||.+..-. +. .+....+..++
T Consensus 159 ~~~e~l~~~~~lA~~~g~~Id~Hl-de~~~~~~~~le~l~~~~~~~Gl~-grV~~sH~~~L~~~~~~~~~~~i~~La~ag 236 (329)
T PRK06886 159 RGLEAMDILLDTAKSLGKMVHVHV-DQFNTPKEKETEQLCDKTIEHGMQ-GRVVAIHGISIGAHSKEYRYRLYQKMREAD 236 (329)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEeE-CCCCchhHHHHHHHHHHHHHcCCC-CCEEEEEeccccCcChhhHHHHHHHHHHcC
Confidence 34566777777776653 233333 2221 212223 3344478997 887764432 21 22456677888
Q ss_pred EEEeCCCC--------------CCc-hHHHHHHHcCCCeee-cCC
Q psy15362 132 VCLDTPLC--------------NGH-TTSMDVLWTGTPVVT-LPG 160 (200)
Q Consensus 132 v~l~~~~~--------------~~g-~~~lEAma~G~PVV~-~~g 160 (200)
+-+.+.|. ..| ..+-|-++.|++|-. +++
T Consensus 237 i~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~aGV~V~lGtDn 281 (329)
T PRK06886 237 MMVIACPMAWIDSNRKEDLMPFHNALTPADEMIPEGITVALGTDN 281 (329)
T ss_pred CeEEECchhhhhhccccccCcCCCCCCCHHHHHHCCCeEEEecCC
Confidence 77665442 234 358899999999975 444
No 417
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=26.86 E-value=1.8e+02 Score=24.22 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=23.1
Q ss_pred HHhhcccc--cEEEeCCCCCC--chHHHHHHH--cCCCeee
Q psy15362 123 HVRRGQLA--DVCLDTPLCNG--HTTSMDVLW--TGTPVVT 157 (200)
Q Consensus 123 ~~~~~~~a--Dv~l~~~~~~~--g~~~lEAma--~G~PVV~ 157 (200)
+....+.+ |+++-.|..++ .--++++|+ +..|+|-
T Consensus 98 L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF 138 (255)
T PF03949_consen 98 LLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIF 138 (255)
T ss_dssp HHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEE
T ss_pred HHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEE
Confidence 33444566 99987764333 345999998 5789985
No 418
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=26.75 E-value=4.1e+02 Score=23.86 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=34.1
Q ss_pred CCHHHHH-HHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCC
Q psy15362 65 IDPSTLQ-MWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLD 108 (200)
Q Consensus 65 ~~~~~l~-a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~ 108 (200)
+...+++ ++.++.++.|+.++++-|+++-..+++-.++++.|+.
T Consensus 199 g~~~fL~~~l~~lr~~~~~~~ILvR~DSgF~~~el~~~ce~~g~~ 243 (448)
T PF13701_consen 199 GAAEFLKRVLRRLRQRWPDTRILVRGDSGFASPELMDWCEAEGVD 243 (448)
T ss_pred HHHHHHHHHHHHHhhhCccceEEEEecCccCcHHHHHHHHhCCCe
Confidence 3334444 5666777889999999998777788999999998984
No 419
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=26.68 E-value=1e+02 Score=25.96 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=39.0
Q ss_pred hcCCCCCCEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEec
Q psy15362 46 QYGLPEDAIVYCNFNQLYKIDPS-TLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSN 116 (200)
Q Consensus 46 ~l~l~~~~~v~~~~~r~~K~~~~-~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g 116 (200)
+-|++.=++-+|++...+|..+. -++.+.+|.+.. +.-|++-|+++...+.+++.++ +|+ .+|-+--
T Consensus 164 ~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~-~iPLVlHGgSG~~~e~~~~ai~-~Gi--~KiNi~T 231 (282)
T TIGR01858 164 ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV-DVPLVLHGASDVPDEDVRRTIE-LGI--CKVNVAT 231 (282)
T ss_pred HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHH-cCC--eEEEeCc
Confidence 34553222334544445555332 245666666665 5679999977666677777654 588 4565533
No 420
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=26.68 E-value=2.5e+02 Score=21.15 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=35.5
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHH
Q psy15362 51 EDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQ 103 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~ 103 (200)
+..++|++..+-.. ....++.+..|.+..|+.++++-+- |.....++++-+
T Consensus 59 ~~~vvfVSa~S~~h-~~~~~~~i~si~~~~P~~k~ilY~L-gL~~~~i~~L~~ 109 (142)
T PF07801_consen 59 SSDVVFVSATSDNH-FNESMKSISSIRKFYPNHKIILYDL-GLSEEQIKKLKK 109 (142)
T ss_pred CCccEEEEEecchH-HHHHHHHHHHHHHHCCCCcEEEEeC-CCCHHHHHHHHh
Confidence 34577776654322 2467788888999999999999985 355566666554
No 421
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=26.57 E-value=2.6e+02 Score=24.01 Aligned_cols=36 Identities=19% Similarity=0.079 Sum_probs=25.7
Q ss_pred cccccEEEeCCCCCC-chHHHHHHHcCCCeeecCCCc
Q psy15362 127 GQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGET 162 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~~g~~ 162 (200)
...+|+++...|.+. ...+.+++..|++||-..++.
T Consensus 66 ~~~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 66 LAGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred hcCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCccc
Confidence 356899987777654 344666668999999876654
No 422
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=26.53 E-value=4.1e+02 Score=22.81 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=37.9
Q ss_pred CCCEEEEEeCCCCCCC---HHHHH--------HHHHHHHHCCCcEEEEEcCCcccHHHHHH-HHHHcCCCCCcEEEeccC
Q psy15362 51 EDAIVYCNFNQLYKID---PSTLQ--------MWVNVLKAVPNSILWLLKFPAVGEANIQA-TAQALGLDQHRILFSNVA 118 (200)
Q Consensus 51 ~~~~v~~~~~r~~K~~---~~~l~--------a~~~i~~~~p~~~l~ivG~~~~~~~~l~~-~~~~~gl~~~rv~f~g~~ 118 (200)
.-.+++.+.|.++|-- .++++ ...++.+..||+.+++++. |- +.+-- ..+..|...+||+..|-+
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtN--Pv-D~~ty~~~k~sg~p~~rvig~gt~ 145 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN--PV-DILTYIAMKFSGFPKNRVIGSGTV 145 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecC--cH-HHHHHHHHHhcCCCccceecccch
Confidence 3457788888776632 22222 3344666789999999974 32 22322 233346655787776653
No 423
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=26.45 E-value=3.6e+02 Score=21.99 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=21.7
Q ss_pred HHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccC
Q psy15362 71 QMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 71 ~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
+++.+++++.|+...++.... ......-+.++++|+. +.+.+.|+=
T Consensus 174 ~~~~~~l~~~~~~~ai~~~~D-~~A~g~~~al~~~g~~-~dv~vvG~D 219 (298)
T cd06302 174 QTAQELLKAYPDLKGIIGPTS-VGIPGAARAVEEAGLK-GKVAVTGLG 219 (298)
T ss_pred HHHHHHHHhCCCceEEEECCC-cchhHHHHHHHhcCCC-CCEEEEEeC
Confidence 444455555555555554321 2222233445555665 556666653
No 424
>PRK12861 malic enzyme; Reviewed
Probab=26.40 E-value=2e+02 Score=27.89 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEec--------c---CCH-----------HHHHhh
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSN--------V---AAK-----------EEHVRR 126 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g--------~---~~~-----------~~~~~~ 126 (200)
++.++...-++..+.++++.|-| ..--.+-+++...|+..+|+++.. + ++. ..+...
T Consensus 176 llnal~~~gk~l~d~~iv~~GAG-aAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~ea 254 (764)
T PRK12861 176 FINGLKVVGKSIKEVKVVTSGAG-AAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEV 254 (764)
T ss_pred HHHHHHHhCCChhHcEEEEECHh-HHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHH
Confidence 33444433345568999999864 322334456666788645787765 1 111 123444
Q ss_pred cccccEEEeCCCCCC--chHHHHHHHcCCCeee
Q psy15362 127 GQLADVCLDTPLCNG--HTTSMDVLWTGTPVVT 157 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~--g~~~lEAma~G~PVV~ 157 (200)
+..+|+|+-.|. .| .--++++|+- -|+|-
T Consensus 255 i~~advliG~S~-~g~ft~e~v~~Ma~-~PIIF 285 (764)
T PRK12861 255 IGGADVFLGLSA-GGVLKAEMLKAMAA-RPLIL 285 (764)
T ss_pred HhcCCEEEEcCC-CCCCCHHHHHHhcc-CCEEE
Confidence 567899987664 33 3459999987 89994
No 425
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=26.37 E-value=2.1e+02 Score=22.02 Aligned_cols=61 Identities=7% Similarity=0.029 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccC--CHHHHHhhcccccEEEeC
Q psy15362 68 STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA--AKEEHVRRGQLADVCLDT 136 (200)
Q Consensus 68 ~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~--~~~~~~~~~~~aDv~l~~ 136 (200)
..++++.-+....-|.-.++-|+ .+...|-+.+++.|.. |+..|.- ..+++ -++||-|++-
T Consensus 93 laIDame~~~~~~iD~~vLvSgD--~DF~~Lv~~lre~G~~---V~v~g~~~~ts~~L---~~acd~FI~L 155 (160)
T TIGR00288 93 MAVEAMELIYNPNIDAVALVTRD--ADFLPVINKAKENGKE---TIVIGAEPGFSTAL---QNSADIAIIL 155 (160)
T ss_pred HHHHHHHHhccCCCCEEEEEecc--HhHHHHHHHHHHCCCE---EEEEeCCCCChHHH---HHhcCeEEeC
Confidence 45677665544334555555554 3445677777777764 8888832 23444 3799998753
No 426
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=26.17 E-value=91 Score=24.39 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcc-----cHHHHHHHHHHcC--CCCCcEEEeccCC
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAV-----GEANIQATAQALG--LDQHRILFSNVAA 119 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~-----~~~~l~~~~~~~g--l~~~rv~f~g~~~ 119 (200)
+.+.+..+.++.|+.++.++-.... ....+.+.+.+.. .....+.+.|.-+
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vcGp~~ 200 (224)
T cd06187 143 DLEGLLALAARHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRDGPDWADHDIYICGPPA 200 (224)
T ss_pred ChHHHHHHHHhCCCeEEEEEeCCCCCccCCCcccHHHHHHHhccccccCEEEEECCHH
Confidence 3455555666677777654332111 1123333333322 1114677777654
No 427
>PF02504 FA_synthesis: Fatty acid synthesis protein; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes []. The plsX gene encodes a poorly understood enzyme of phospholipid metabolism [].; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process; PDB: 1VI1_B 1U7N_B.
Probab=26.01 E-value=1.1e+02 Score=26.26 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCC-CCcEEEec
Q psy15362 64 KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLD-QHRILFSN 116 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~-~~rv~f~g 116 (200)
.....+++...+.+++.|+..++++|+ ++.++..+++++.. .+|+.+..
T Consensus 12 ~~p~~~v~ga~~a~~~~~~~~i~lvG~----~~~i~~~l~~~~~~~~~~i~iv~ 61 (323)
T PF02504_consen 12 NGPEEVVEGAILALKENPDLEIVLVGD----EEEIKPLLEKYGFELNSRIEIVH 61 (323)
T ss_dssp TTTHHHHHHHHHHHHH-TTEEEEEEE-----HHHHHTT-SS------TTEEEEE
T ss_pred cChHHHHHHHHHHHHHCcCeEEEEEEC----HHHHHHHHHhcccccccceEEEe
Confidence 456788999998899999999999995 35566666554211 14666643
No 428
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=25.63 E-value=4.7e+02 Score=23.08 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=43.4
Q ss_pred EEEEEcCCcc-cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeee
Q psy15362 84 ILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVT 157 (200)
Q Consensus 84 ~l~ivG~~~~-~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~ 157 (200)
++.++|.-.+ +.+++++++++.|+. - +.++...+.+++.. +..|.+.+...++.+ ....+|. .|+|.+.
T Consensus 161 ~vniiG~~~~~d~~ei~~lL~~~Gl~-~-~~~l~~~~~~el~~-~~~A~~~i~~~~~~~~~a~~Le~--~GvP~~~ 231 (416)
T cd01980 161 SLALLGEMFPADPVAIGSVLERMGLA-A-VPVVPTREWRELYA-AGDAAAVAALHPFYTATIRELEE--AGRPIVS 231 (416)
T ss_pred eEEEEccCCCCCHHHHHHHHHHcCCc-e-eeEeCCCCHHHHhh-cccCcEEEEeChhHHHHHHHHHH--cCCceec
Confidence 6677785323 346899999999997 3 33344446677765 455666654445443 2346674 4999873
No 429
>PRK06141 ornithine cyclodeaminase; Validated
Probab=25.54 E-value=2.6e+02 Score=23.68 Aligned_cols=74 Identities=15% Similarity=0.024 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCH--HH-----------------HHhhcccccEEEeCCCCCC
Q psy15362 81 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK--EE-----------------HVRRGQLADVCLDTPLCNG 141 (200)
Q Consensus 81 p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~--~~-----------------~~~~~~~aDv~l~~~~~~~ 141 (200)
...++.++|.|...+..++.+....++ .+|++.++.+. ++ .....+.|||++...+...
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~--~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~ 201 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPI--KQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTE 201 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCC--CEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCC
Confidence 345677777643333334444433343 45555554321 11 1223457898876544333
Q ss_pred chHHHHHHHcCCCeee
Q psy15362 142 HTTSMDVLWTGTPVVT 157 (200)
Q Consensus 142 g~~~lEAma~G~PVV~ 157 (200)
+...-|.+.-|. +|.
T Consensus 202 pvl~~~~l~~g~-~i~ 216 (314)
T PRK06141 202 PLVRGEWLKPGT-HLD 216 (314)
T ss_pred CEecHHHcCCCC-EEE
Confidence 333346666777 443
No 430
>PRK05481 lipoyl synthase; Provisional
Probab=25.42 E-value=3.3e+02 Score=22.83 Aligned_cols=51 Identities=8% Similarity=0.129 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHH---HHHHHHcCCCCCcEEEeccCC
Q psy15362 66 DPSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANI---QATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l---~~~~~~~gl~~~rv~f~g~~~ 119 (200)
.+..++.+..+.+..|+..+ +|+|. +...+.+ ..+++++++ +++.+..+.+
T Consensus 179 ~e~~le~i~~ar~~~pgi~~~t~~IvGf-GET~ed~~~tl~~lrel~~--d~v~if~Ys~ 235 (289)
T PRK05481 179 YERSLELLKRAKELHPGIPTKSGLMVGL-GETDEEVLEVMDDLRAAGV--DILTIGQYLQ 235 (289)
T ss_pred HHHHHHHHHHHHHhCCCCeEeeeeEEEC-CCCHHHHHHHHHHHHhcCC--CEEEEEccCC
Confidence 46788888888888888765 78887 5444433 356777776 7888888776
No 431
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=25.26 E-value=3e+02 Score=24.38 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHH---HHHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANI---QATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l---~~~~~~~gl~~~rv~f~g~~~ 119 (200)
..+.+++..+.+..|+..+ +|+|.++...+.+ .+++++++. +.+.+..+.|
T Consensus 268 ~~~~~~i~~i~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~--~~i~~~~~~p 324 (420)
T TIGR01578 268 SDFEDIVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRP--EKINITKFSP 324 (420)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCC--CEEEEEEeeC
Confidence 5678888888888888654 6788755544444 456777665 6677766655
No 432
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=25.06 E-value=3.4e+02 Score=21.27 Aligned_cols=80 Identities=20% Similarity=0.164 Sum_probs=42.1
Q ss_pred CCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc----cHHHHHHHHHHcCCCC-CcE-------EEec
Q psy15362 49 LPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV----GEANIQATAQALGLDQ-HRI-------LFSN 116 (200)
Q Consensus 49 l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~----~~~~l~~~~~~~gl~~-~rv-------~f~g 116 (200)
+....-+.|....-..+.+.++.- +. ..||.+++++++... .-+.|..+.++ |++. .|+ =|+-
T Consensus 38 l~~gaAI~G~~~TENlGIEKvI~N---vi-sNpnIRflilcG~Ev~GH~~Gqsl~aLh~N-Gid~~grIiGa~GaiPfle 112 (176)
T PF04208_consen 38 LDAGAAIAGPCKTENLGIEKVIAN---VI-SNPNIRFLILCGSEVKGHLTGQSLLALHEN-GIDEDGRIIGAKGAIPFLE 112 (176)
T ss_pred hhcCceeeecccccccCHHHHHHH---Hh-cCCCceEEEEecCccCCCcchHHHHHHHHc-CCCCCCCCccCCCCcchhh
Confidence 333444444444445555544433 32 479999999985321 12456666655 8852 442 2333
Q ss_pred cCCHHHHHhhcccccEE
Q psy15362 117 VAAKEEHVRRGQLADVC 133 (200)
Q Consensus 117 ~~~~~~~~~~~~~aDv~ 133 (200)
.++.+.+.++-+...+.
T Consensus 113 Ni~~~aV~rFq~qVelV 129 (176)
T PF04208_consen 113 NIPREAVERFQQQVELV 129 (176)
T ss_pred cCCHHHHHHHHHheEEE
Confidence 45555555555555443
No 433
>KOG2882|consensus
Probab=25.00 E-value=1.9e+02 Score=24.77 Aligned_cols=51 Identities=10% Similarity=0.007 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHH
Q psy15362 68 STLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHV 124 (200)
Q Consensus 68 ~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~ 124 (200)
.+++++.....+.| +++|. |....+.-+.++.++.++|..|.|-.=..|+.
T Consensus 206 ~~v~av~~~t~R~P----~v~GK--P~~~m~~~l~~~~~i~psRt~mvGDRL~TDIl 256 (306)
T KOG2882|consen 206 SFVAAVKFATGRQP----IVLGK--PSTFMFEYLLEKFNIDPSRTCMVGDRLDTDIL 256 (306)
T ss_pred cHHHHHHHHhcCCC----eecCC--CCHHHHHHHHHHcCCCcceEEEEcccchhhhh
Confidence 46677666666666 35564 44566677888889999999999987555553
No 434
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=24.96 E-value=4.1e+02 Score=23.20 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCC-CCCCchHHHHHHHcCCCeeecCC
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG 160 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~-~~~~g~~~lEAma~G~PVV~~~g 160 (200)
..+.+..+++|.. -..+.++.+..+++. -+...|+|+.+. |. +++=+.-...+|++|...
T Consensus 257 ~~l~k~~~~~g~~-~~li~~~~i~p~~L~-~f~~iD~~v~taCPR---i~iDd~~~f~kPlLTP~E 317 (347)
T COG1736 257 RELVKLLKEAGKE-VYLIVVDEISPDKLA-NFDDIDAFVNTACPR---IPIDDGDRFKKPLLTPYE 317 (347)
T ss_pred HHHHHHHHHcCCc-eEEEEecCCCHHHHh-cccceeEEEEecCCC---cccchHhhhCCcccChHH
Confidence 4577788888986 677778888876655 356799998763 32 667788889999998643
No 435
>CHL00067 rps2 ribosomal protein S2
Probab=24.91 E-value=84 Score=25.58 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=22.8
Q ss_pred cccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 129 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
.=|+.+..-+......+.||.-+|.|||+..
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaiv 191 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISIL 191 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEE
Confidence 3456654445445589999999999999853
No 436
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=24.81 E-value=2.3e+02 Score=25.36 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=50.9
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccH-H----HHHHHHHHcCCCCCcEEEeccCCHHHHHhhcc
Q psy15362 54 IVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGE-A----NIQATAQALGLDQHRILFSNVAAKEEHVRRGQ 128 (200)
Q Consensus 54 ~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~-~----~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~ 128 (200)
++|.+.|+. ..+.+++.+....+..|...++++.-. +.+ + ..++++++.|.+ +.+....+.+ ..+.
T Consensus 3 I~iIGgGS~--~tp~li~~l~~~~~~l~~~ei~L~Did-~~Rl~~v~~l~~~~~~~~g~~---~~v~~ttD~~---~Al~ 73 (425)
T cd05197 3 IAIIGGGSS--FTPELVSGLLKTPEELPISEVTLYDID-EERLDIILTIAKRYVEEVGAD---IKFEKTMDLE---DAII 73 (425)
T ss_pred EEEECCchH--hHHHHHHHHHcChhhCCCCEEEEEcCC-HHHHHHHHHHHHHHHHhhCCC---eEEEEeCCHH---HHhC
Confidence 344444443 567788887776667888999998532 221 1 234567777765 5565565443 4568
Q ss_pred cccEEEeCCCCCC
Q psy15362 129 LADVCLDTPLCNG 141 (200)
Q Consensus 129 ~aDv~l~~~~~~~ 141 (200)
.||.++.+...+|
T Consensus 74 gADfVi~~irvGg 86 (425)
T cd05197 74 DADFVINQFRVGG 86 (425)
T ss_pred CCCEEEEeeecCC
Confidence 9999999887654
No 437
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=24.73 E-value=3.2e+02 Score=21.35 Aligned_cols=49 Identities=10% Similarity=0.010 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCccc---HHHHHHHHHHcCCCCCcEEEeccC
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPAVG---EANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~~~---~~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
..+++.+.+.+++. +..+++....... ...+.+.+.+.++ |-+++.+..
T Consensus 15 ~~~~~gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~v--dgiii~~~~ 66 (264)
T cd01574 15 SSTLAAIESAAREA-GYAVTLSMLAEADEEALRAAVRRLLAQRV--DGVIVNAPL 66 (264)
T ss_pred HHHHHHHHHHHHHC-CCeEEEEeCCCCchHHHHHHHHHHHhcCC--CEEEEeCCC
Confidence 45666677666665 5666555432111 1122222333345 567766654
No 438
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=24.68 E-value=1.8e+02 Score=21.02 Aligned_cols=45 Identities=7% Similarity=-0.029 Sum_probs=32.3
Q ss_pred HHHHHHHCC--CcEEEEEcCCcc--cHHHHHHHHHHcCCCCCcEEEeccC
Q psy15362 73 WVNVLKAVP--NSILWLLKFPAV--GEANIQATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 73 ~~~i~~~~p--~~~l~ivG~~~~--~~~~l~~~~~~~gl~~~rv~f~g~~ 118 (200)
.-.|+++.- ..++.++|+-.. ....++.++.+.+-. +.+.|....
T Consensus 58 AGeiLQKf~NY~iklAivGD~s~~~~S~~l~dfi~EsN~G-~~~~F~~~~ 106 (113)
T PF13788_consen 58 AGEILQKFVNYRIKLAIVGDFSAYATSKSLRDFIYESNRG-NHFFFVPDE 106 (113)
T ss_pred HHHHHHHHHhhceeEEEEEcccccccchhHHHHHHHhcCC-CeEEEECCH
Confidence 345666643 589999997322 356899999998776 889998765
No 439
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=24.56 E-value=1.3e+02 Score=25.32 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=36.5
Q ss_pred hhcCCCCCCEEEEEeCCCCCCCHHH-HHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEE
Q psy15362 45 QQYGLPEDAIVYCNFNQLYKIDPST-LQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILF 114 (200)
Q Consensus 45 ~~l~l~~~~~v~~~~~r~~K~~~~~-l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f 114 (200)
++-|++-=++-+|++...+|..+.+ ++.+.+|.++. +.-|++-|+.|...+.+++.++ +|+ .+|-+
T Consensus 166 ~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~-~iPLVLHGgSG~~~e~~~~ai~-~Gi--~KiNi 232 (285)
T PRK07709 166 EATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT-GVPLVLHGGTGIPTADIEKAIS-LGT--SKINV 232 (285)
T ss_pred HHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHH-cCC--eEEEe
Confidence 3345542223344443345543322 35556666655 5669999977666677776654 588 45554
No 440
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=24.51 E-value=1.3e+02 Score=23.44 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=49.2
Q ss_pred cEEEEEcCCcccHHHHH-HHHHHcCCCCCcEEEeccCCH-HHHHhh--cccccEEEeC----CCCCCchHHHHHHHcCCC
Q psy15362 83 SILWLLKFPAVGEANIQ-ATAQALGLDQHRILFSNVAAK-EEHVRR--GQLADVCLDT----PLCNGHTTSMDVLWTGTP 154 (200)
Q Consensus 83 ~~l~ivG~~~~~~~~l~-~~~~~~gl~~~rv~f~g~~~~-~~~~~~--~~~aDv~l~~----~~~~~g~~~lEAma~G~P 154 (200)
..++++|-.|.++..+= .+++++++. +++- ..+-.- ++.++||--- |+..--.++.|....+--
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~--------F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ 74 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLP--------FIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNA 74 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCC--------cccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCe
Confidence 45788897777788774 567777764 3331 222211 3445554311 110011345566666634
Q ss_pred eeecCCCcchhhhHHHHHhhcCCCcceecCHHHHHHH
Q psy15362 155 VVTLPGETLASRVAASQLATLGCPELIARTHKEYQDI 191 (200)
Q Consensus 155 VV~~~g~~~~~r~~~~~~~~~g~~~~ia~~~~~yv~~ 191 (200)
||++.|......-.-..++.-|.--|+..+.+...++
T Consensus 75 ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~R 111 (172)
T COG0703 75 VIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYER 111 (172)
T ss_pred EEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHH
Confidence 4456655543333333344444433445555544443
No 441
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=24.49 E-value=4.9e+02 Score=22.92 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=56.3
Q ss_pred HHHHHcCCCC-CcEEEeccCCHHHHHhhcc------cccEEEeCCC--CCCchHHHHHHH-------cCCCeeecCCCcc
Q psy15362 100 ATAQALGLDQ-HRILFSNVAAKEEHVRRGQ------LADVCLDTPL--CNGHTTSMDVLW-------TGTPVVTLPGETL 163 (200)
Q Consensus 100 ~~~~~~gl~~-~rv~f~g~~~~~~~~~~~~------~aDv~l~~~~--~~~g~~~lEAma-------~G~PVV~~~g~~~ 163 (200)
.+++.+|..+ +=+-+.|..+.+.+...+. ..|..+.... ......+.+++. .++|+++.-.. -
T Consensus 274 D~i~~~gg~paNPlDlgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G-~ 352 (392)
T PRK14046 274 DMIKLAGGEPANFLDVGGGASPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAG-T 352 (392)
T ss_pred HHHHhcCCCCcCCEEecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCC-C
Confidence 5666666554 4555544434444444332 2455543222 111123445544 58999875322 1
Q ss_pred hhhhHHHHHhhcCCCcceecCHHHHHHHHHHhhc
Q psy15362 164 ASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 197 (200)
Q Consensus 164 ~~r~~~~~~~~~g~~~~ia~~~~~yv~~a~~l~~ 197 (200)
....+..+++..|++-+..+|-++-++.++++++
T Consensus 353 ~~e~~~~iL~~~Gipvf~~~~~~~a~~~~v~~~~ 386 (392)
T PRK14046 353 NVEEGRKILAESGLPIITADTLAEAAEKAVEAWK 386 (392)
T ss_pred CHHHHHHHHHHcCCCeeecCCHHHHHHHHHHHHh
Confidence 2233455677889998888999999999999875
No 442
>PRK10116 universal stress protein UspC; Provisional
Probab=24.43 E-value=2.6e+02 Score=19.77 Aligned_cols=41 Identities=7% Similarity=0.004 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCCCcEEEeccCCHHHHHhhcc--cccEEEeCCC
Q psy15362 98 IQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCLDTPL 138 (200)
Q Consensus 98 l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~--~aDv~l~~~~ 138 (200)
++++....|+..+.++...--+.+.+..+-+ .+|+.+...+
T Consensus 69 l~~~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~ 111 (142)
T PRK10116 69 LDKLIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNH 111 (142)
T ss_pred HHHHHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCC
Confidence 4444455555312233322233455555544 6777766443
No 443
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.39 E-value=4.4e+02 Score=22.30 Aligned_cols=86 Identities=10% Similarity=0.129 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHC----CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC
Q psy15362 66 DPSTLQMWVNVLKAV----PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG 141 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~----p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~ 141 (200)
.|-.-.+..++++.+ .+.+.+++|.++---.-+..+..+.|. .|+...... .++..+.+.||+++...+..+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a---tVt~~hs~t-~~l~~~~~~ADIVV~avG~~~ 213 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGA---TVTICHSKT-RDLAAHTRQADIVVAAVGKRN 213 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEecCCC-CCHHHHhhhCCEEEEcCCCcC
Confidence 355566777777765 478999999754312335555555554 366655443 356677899999997765332
Q ss_pred chHHHHHHHcCCCee
Q psy15362 142 HTTSMDVLWTGTPVV 156 (200)
Q Consensus 142 g~~~lEAma~G~PVV 156 (200)
..--|.+--|.=||
T Consensus 214 -~i~~~~ik~gavVI 227 (285)
T PRK14189 214 -VLTADMVKPGATVI 227 (285)
T ss_pred -ccCHHHcCCCCEEE
Confidence 23336666675443
No 444
>PRK10481 hypothetical protein; Provisional
Probab=24.36 E-value=3.9e+02 Score=21.72 Aligned_cols=102 Identities=19% Similarity=0.096 Sum_probs=48.1
Q ss_pred CCEEEEEeCCCC-----CC----CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc----C
Q psy15362 52 DAIVYCNFNQLY-----KI----DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV----A 118 (200)
Q Consensus 52 ~~~v~~~~~r~~-----K~----~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~----~ 118 (200)
+.+++.|.+.+. +. ....+..+.. .-...-++-++..-...-++.++...+.|.. +.|... .
T Consensus 92 d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~--Al~~g~riGVitP~~~qi~~~~~kw~~~G~~---v~~~~aspy~~ 166 (224)
T PRK10481 92 DVILLLCTGEFPSLTARNAILLEPSRILPPLVA--AIVGGHQVGVIVPVEEQLAQQAQKWQVLQKP---PVFALASPYHG 166 (224)
T ss_pred CEEEEEecCCCCCccccCccccCchhhHHHHHH--HhcCCCeEEEEEeCHHHHHHHHHHHHhcCCc---eeEeecCCCCC
Confidence 568888888721 11 2223322222 1223456666642112223444455555776 334442 2
Q ss_pred CHHHHHhhc-----ccccEEE-eCCCCCCchH-HHHHHHcCCCeeecC
Q psy15362 119 AKEEHVRRG-----QLADVCL-DTPLCNGHTT-SMDVLWTGTPVVTLP 159 (200)
Q Consensus 119 ~~~~~~~~~-----~~aDv~l-~~~~~~~g~~-~lEAma~G~PVV~~~ 159 (200)
+.+.+...- ..+|+++ ++..|...+. .+| -+.|+|||..+
T Consensus 167 ~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le-~~lg~PVI~~n 213 (224)
T PRK10481 167 SEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQ-KALDVPVLLSN 213 (224)
T ss_pred CHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHH-HHHCcCEEcHH
Confidence 222333222 3588885 4434433222 333 36899999843
No 445
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=24.35 E-value=2.4e+02 Score=20.26 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCcEEEEEcCCc---ccHHHHHHHHHHcCCC------------CCcEEEec---cCCHHHHHhhcccccE
Q psy15362 71 QMWVNVLKAVPNSILWLLKFPA---VGEANIQATAQALGLD------------QHRILFSN---VAAKEEHVRRGQLADV 132 (200)
Q Consensus 71 ~a~~~i~~~~p~~~l~ivG~~~---~~~~~l~~~~~~~gl~------------~~rv~f~g---~~~~~~~~~~~~~aDv 132 (200)
+.+.+++.+.... ++++|.+. ...+.++++++++|+. .++=.|.| .........+++.||+
T Consensus 2 ~~~~~~L~~A~rP-~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 2 DEAADLLSSAKRP-VILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHHH-SSE-EEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred HHHHHHHHhCCCE-EEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 3344444443333 66667532 2457899999988763 01222333 2223455566788898
Q ss_pred EEe
Q psy15362 133 CLD 135 (200)
Q Consensus 133 ~l~ 135 (200)
.|.
T Consensus 81 vl~ 83 (137)
T PF00205_consen 81 VLA 83 (137)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
No 446
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=24.34 E-value=1.9e+02 Score=20.78 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcc---cHHHHHHHHHHcCCC
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAV---GEANIQATAQALGLD 108 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~---~~~~l~~~~~~~gl~ 108 (200)
..+.|..+....|+..++++|.|.. -.+.+++.++++|+.
T Consensus 41 ~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~ 83 (114)
T cd05125 41 TEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIA 83 (114)
T ss_pred CHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCE
Confidence 3455566666567777888886431 235677788888886
No 447
>KOG0369|consensus
Probab=24.26 E-value=1.8e+02 Score=28.10 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCCCcEEE-eccCC-HHHHHhhccccc-EEEeCCCCC----CchH--HHHHHHcCCCeee-cCCCcchh
Q psy15362 96 ANIQATAQALGLDQHRILF-SNVAA-KEEHVRRGQLAD-VCLDTPLCN----GHTT--SMDVLWTGTPVVT-LPGETLAS 165 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f-~g~~~-~~~~~~~~~~aD-v~l~~~~~~----~g~~--~lEAma~G~PVV~-~~g~~~~~ 165 (200)
+++-+.+++.++ |-|+= .|+++ +.|+....+.|- .|+-|||+- |..+ -.-|..||+|||- ++|.--.-
T Consensus 96 deii~iak~~~v--davHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~ 173 (1176)
T KOG0369|consen 96 DEIISIAKKHNV--DAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTV 173 (1176)
T ss_pred HHHHHHHHHcCC--CeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccH
Confidence 456677777777 33442 44554 456655444443 356676631 2222 3346679999994 66654322
Q ss_pred hhHHHHHhhcCCCcc
Q psy15362 166 RVAASQLATLGCPEL 180 (200)
Q Consensus 166 r~~~~~~~~~g~~~~ 180 (200)
.-+..+++.+|+|-.
T Consensus 174 ~EA~eF~k~yG~PvI 188 (1176)
T KOG0369|consen 174 EEALEFVKEYGLPVI 188 (1176)
T ss_pred HHHHHHHHhcCCcEE
Confidence 334456777777743
No 448
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=24.18 E-value=3.4e+02 Score=20.94 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=43.8
Q ss_pred CCEEEEEeCCCCCCC----HHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHH
Q psy15362 52 DAIVYCNFNQLYKID----PSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEH 123 (200)
Q Consensus 52 ~~~v~~~~~r~~K~~----~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~ 123 (200)
|.++++...++.|.. ++-++.+.+..+..||.+. .+.. ..+...++++|.. ++.-|-+...|+
T Consensus 30 d~viVaV~~np~K~plFsleER~~l~~~~~~~l~nV~V--~~f~----~Llvd~ak~~~a~---~ivRGLR~~sDf 96 (159)
T COG0669 30 DEVIVAVAINPSKKPLFSLEERVELIREATKHLPNVEV--VGFS----GLLVDYAKKLGAT---VLVRGLRAVSDF 96 (159)
T ss_pred cEEEEEEEeCCCcCCCcCHHHHHHHHHHHhcCCCceEE--Eecc----cHHHHHHHHcCCC---EEEEeccccchH
Confidence 457777777888763 4566777777888898854 3332 3678899998876 788887654443
No 449
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.97 E-value=3e+02 Score=24.51 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHCCCcE---EEEEcCCcccHHHHH---HHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSI---LWLLKFPAVGEANIQ---ATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~---l~ivG~~~~~~~~l~---~~~~~~gl~~~rv~f~g~~~ 119 (200)
+.+++++..+.+..|+.. -+|+|.++...+.++ ++++++++ +++++..+.|
T Consensus 272 ~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~--~~i~~f~ysp 328 (440)
T PRK14334 272 EKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGY--DSAYMFIYSP 328 (440)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCC--CEeeeeEeeC
Confidence 468889898888888753 367887555554444 56677776 6777666544
No 450
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=23.96 E-value=1.2e+02 Score=25.26 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCCCcEEEecc-CCHHHHHhhcccccEEEeC-CCC--CCc-----hHHHH---H--HHcCCCeeecCC
Q psy15362 95 EANIQATAQALGLDQHRILFSNV-AAKEEHVRRGQLADVCLDT-PLC--NGH-----TTSMD---V--LWTGTPVVTLPG 160 (200)
Q Consensus 95 ~~~l~~~~~~~gl~~~rv~f~g~-~~~~~~~~~~~~aDv~l~~-~~~--~~g-----~~~lE---A--ma~G~PVV~~~g 160 (200)
.+.+++.++++|+ +.|.|... .+.+.+..+.+.++=|++. +.. +|. ..+-+ . -.+.+||+.--|
T Consensus 129 ~~~~~~~~~~~gl--~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFG 206 (259)
T PF00290_consen 129 SEELREAAKKHGL--DLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFG 206 (259)
T ss_dssp HHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESS
T ss_pred HHHHHHHHHHcCC--eEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecC
Confidence 4567788888898 56777766 5567777666666666543 222 221 11111 1 124899998766
Q ss_pred Cc
Q psy15362 161 ET 162 (200)
Q Consensus 161 ~~ 162 (200)
-.
T Consensus 207 I~ 208 (259)
T PF00290_consen 207 IS 208 (259)
T ss_dssp S-
T ss_pred CC
Confidence 44
No 451
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=23.95 E-value=2.4e+02 Score=25.62 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=39.7
Q ss_pred HHHHHHHCCCcEEEEEcCCcccHHH---HHHHHHHcCCCCCcEEEeccCC-HHHHHhhcccccEE
Q psy15362 73 WVNVLKAVPNSILWLLKFPAVGEAN---IQATAQALGLDQHRILFSNVAA-KEEHVRRGQLADVC 133 (200)
Q Consensus 73 ~~~i~~~~p~~~l~ivG~~~~~~~~---l~~~~~~~gl~~~rv~f~g~~~-~~~~~~~~~~aDv~ 133 (200)
+.+|+.-.||..|+--|..+-.++. .-+++.++++. --|++.|... .+++..++..+++.
T Consensus 113 l~~I~~~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~-~pIIyAGN~~a~~~V~~il~~~~~~ 176 (463)
T TIGR01319 113 IEAIEESNLDIILFAGGTDGGEEECGIHNAKMLAEHGLD-CAIIVAGNKDIQDEVQEIFDHADIF 176 (463)
T ss_pred HHHHhhcCCCEEEEeCCcCCCchHHHHHHHHHHHhcCCC-CcEEEeCCHHHHHHHHHHHhcCCce
Confidence 3455566788877665432223333 23567777886 6699999987 57888888777765
No 452
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=23.83 E-value=3.1e+02 Score=24.23 Aligned_cols=51 Identities=10% Similarity=0.233 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHCCCcEE---EEEcCCcccHHHH---HHHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVPNSIL---WLLKFPAVGEANI---QATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l---~ivG~~~~~~~~l---~~~~~~~gl~~~rv~f~g~~~ 119 (200)
..+.+++..+.+..|+..+ +|+|.++...+.+ .++++++++ +++.+..+.|
T Consensus 274 ~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~--~~~~~~~~sp 330 (429)
T TIGR00089 274 EEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLVEEVKF--DKLHSFIYSP 330 (429)
T ss_pred HHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCC--CEeeccccCC
Confidence 4677888888888787653 6788655544444 356777666 6677666554
No 453
>PRK07877 hypothetical protein; Provisional
Probab=23.74 E-value=2.4e+02 Score=27.27 Aligned_cols=62 Identities=10% Similarity=-0.076 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCC-CC-chHHHHHHHcCCCeeecC
Q psy15362 98 IQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NG-HTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 98 l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~-~~-g~~~lEAma~G~PVV~~~ 159 (200)
.++.+++.+-.-+-..+...+..+.+..++..+|++++..-. +. -..--.|...|+|+|...
T Consensus 165 a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~ 228 (722)
T PRK07877 165 AARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMAT 228 (722)
T ss_pred HHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 444555544331233445556667777788899999998642 22 233456788999999754
No 454
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=23.66 E-value=61 Score=22.79 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=22.8
Q ss_pred hhcccccEEEeCCC---CCCc--hHHHHHHHcCCCeeecC
Q psy15362 125 RRGQLADVCLDTPL---CNGH--TTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 125 ~~~~~aDv~l~~~~---~~~g--~~~lEAma~G~PVV~~~ 159 (200)
..++.||++|.-.. ...| .-+-=|.+.|+||+...
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~ 96 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLT 96 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 35788999974332 2223 33666889999999853
No 455
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=23.65 E-value=7.3e+02 Score=24.60 Aligned_cols=102 Identities=10% Similarity=0.044 Sum_probs=63.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc----CCHHHHHhhcccc
Q psy15362 55 VYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV----AAKEEHVRRGQLA 130 (200)
Q Consensus 55 v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~----~~~~~~~~~~~~a 130 (200)
.+|.++=....-++.-+++.++.+. +.+.+++- |+....-+..+++.|+..++ ...|. ++.+++......+
T Consensus 541 ~lGli~l~Dp~R~~a~~aI~~l~~a--GI~v~miT--GD~~~tA~aIA~~lGI~~~~-vi~G~el~~~~~~el~~~v~~~ 615 (903)
T PRK15122 541 IRGFLTFLDPPKESAAPAIAALREN--GVAVKVLT--GDNPIVTAKICREVGLEPGE-PLLGTEIEAMDDAALAREVEER 615 (903)
T ss_pred EEEEEeccCccHHHHHHHHHHHHHC--CCeEEEEC--CCCHHHHHHHHHHcCCCCCC-ccchHhhhhCCHHHHHHHhhhC
Confidence 3444443334445666777766654 47777774 34567788899999996333 34443 4556777777888
Q ss_pred cEEEeCCCCCCchHHHHHHHcCCCeeecCCCc
Q psy15362 131 DVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 162 (200)
Q Consensus 131 Dv~l~~~~~~~g~~~lEAma~G~PVV~~~g~~ 162 (200)
++|--.+|+. =..+++++-..==+|++.|+.
T Consensus 616 ~VfAr~sPe~-K~~iV~~Lq~~G~vVamtGDG 646 (903)
T PRK15122 616 TVFAKLTPLQ-KSRVLKALQANGHTVGFLGDG 646 (903)
T ss_pred CEEEEeCHHH-HHHHHHHHHhCCCEEEEECCC
Confidence 8887666632 234677765444567776663
No 456
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=23.54 E-value=65 Score=14.41 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=7.7
Q ss_pred HHHHHHHcCC
Q psy15362 144 TSMDVLWTGT 153 (200)
Q Consensus 144 ~~lEAma~G~ 153 (200)
+++||+-.|.
T Consensus 5 sllealqtg~ 14 (15)
T PF06345_consen 5 SLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHccC
Confidence 5888888774
No 457
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=23.51 E-value=2.7e+02 Score=24.21 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHc
Q psy15362 66 DPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQAL 105 (200)
Q Consensus 66 ~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~ 105 (200)
....+++..+.++++|+.+++++|+ ++.++.+...+
T Consensus 15 P~~vv~g~~~al~~~~~~~~iLvGd----~~~i~~~L~~~ 50 (338)
T COG0416 15 PEVVVPGALQALEEHPDLEIILVGD----EDKIEPLLAKA 50 (338)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEECC----HHHHHHHHhhc
Confidence 4567888888899999999999996 24566655544
No 458
>PRK06444 prephenate dehydrogenase; Provisional
Probab=23.44 E-value=1.9e+02 Score=22.85 Aligned_cols=25 Identities=8% Similarity=-0.041 Sum_probs=13.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHcCCC
Q psy15362 84 ILWLLKFPAVGEANIQATAQALGLD 108 (200)
Q Consensus 84 ~l~ivG~~~~~~~~l~~~~~~~gl~ 108 (200)
++.++|+.|..-..+.+..++.|..
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~ 26 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLG 26 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCE
Confidence 4566665333335566666666653
No 459
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=23.36 E-value=4e+02 Score=21.50 Aligned_cols=107 Identities=9% Similarity=0.043 Sum_probs=61.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCC----HHHHHhhcc--cccEEEeCCCCCCchHHHHH------
Q psy15362 81 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA----KEEHVRRGQ--LADVCLDTPLCNGHTTSMDV------ 148 (200)
Q Consensus 81 p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~----~~~~~~~~~--~aDv~l~~~~~~~g~~~lEA------ 148 (200)
++.+++++.+ ...++.+.+..++.|..-+++...-..+ ..++...+. ..|+.+.+|+... ..+++.
T Consensus 129 ~~~~vLi~rg-~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~~-~~~~~~~~~~~~ 206 (255)
T PRK05752 129 PDPRVLIMRG-EGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQGF-EHLQQLAGADWP 206 (255)
T ss_pred CCCEEEEEcc-CccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHHHH-HHHHHHhChhHH
Confidence 5567777653 3567889998888887645554443321 233333333 4788888875321 111111
Q ss_pred HHcCCCeeecCCCcchhhhHHHHHhhcCCCcce-e--cCHHHHHHHHHHh
Q psy15362 149 LWTGTPVVTLPGETLASRVAASQLATLGCPELI-A--RTHKEYQDIAIRL 195 (200)
Q Consensus 149 ma~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~i-a--~~~~~yv~~a~~l 195 (200)
...++|+++. +...+..++..|....+ + .+.+.+++.+.+.
T Consensus 207 ~~~~~~~~~i------g~~ta~a~~~~G~~~~~~a~~~t~~~L~~al~~~ 250 (255)
T PRK05752 207 ELARLPLFVP------SPRVAEQARAAGAQTVVDCRGASAAALLAALRRQ 250 (255)
T ss_pred HhcCceEEEe------CHHHHHHHHHcCCCceeeCCCCChHHHHHHHHhc
Confidence 2457777763 23344556788887654 4 4677777776653
No 460
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=23.10 E-value=2e+02 Score=20.10 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHh
Q psy15362 81 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVR 125 (200)
Q Consensus 81 p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~ 125 (200)
||.+.++ |.| --++++++++.+++ +-|+|-..++..+...
T Consensus 35 ~~p~~~i-G~G--K~eei~~~~~~~~~--d~vvfd~~Lsp~Q~rN 74 (95)
T PF13167_consen 35 PDPKTYI-GSG--KVEEIKELIEELDA--DLVVFDNELSPSQQRN 74 (95)
T ss_pred CCcceee-chh--HHHHHHHHHhhcCC--CEEEECCCCCHHHHHH
Confidence 5555544 432 23667777777766 6677777776555443
No 461
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=23.09 E-value=4.5e+02 Score=22.74 Aligned_cols=83 Identities=12% Similarity=0.152 Sum_probs=48.5
Q ss_pred hhhhhhcCCCCCCEEEEEeC-CC--CC------CCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHH-HHHHHHcCCCCC
Q psy15362 41 ITSRQQYGLPEDAIVYCNFN-QL--YK------IDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANI-QATAQALGLDQH 110 (200)
Q Consensus 41 ~~~R~~l~l~~~~~v~~~~~-r~--~K------~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l-~~~~~~~gl~~~ 110 (200)
...|+-||++.+..+-++.. +. -| ..+.+..++..-+ .++-++++.|.+|.++..+ +.+++.+|...-
T Consensus 16 ~~~~~~Fg~~~~~~v~~f~~~~~~~p~~d~~y~f~~~~~~~vl~~l--~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 16 VSLKDAFGFDSDMKVPAFSHRDEHVPDIDPAYLFDKATTKAICAGF--AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred EeHHHhcCCCCCCcccCcCCCCCCCCCCCCCccCCHHHHHHHHHHH--hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 45688899988755423222 11 11 1234444333222 2356799999877777654 567888888656
Q ss_pred cEEEeccCCHHHHHh
Q psy15362 111 RILFSNVAAKEEHVR 125 (200)
Q Consensus 111 rv~f~g~~~~~~~~~ 125 (200)
||.+...+...|+..
T Consensus 94 rV~~~~~l~~~DliG 108 (327)
T TIGR01650 94 RVNLDSHVSRIDLVG 108 (327)
T ss_pred EEEecCCCChhhcCC
Confidence 777777765555443
No 462
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=23.06 E-value=4.1e+02 Score=21.53 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=6.9
Q ss_pred hHHHHHHHcCC
Q psy15362 143 TTSMDVLWTGT 153 (200)
Q Consensus 143 ~~~lEAma~G~ 153 (200)
...++++..|.
T Consensus 222 ~~~~~~l~~g~ 232 (302)
T TIGR02637 222 SEMAKYVKNGT 232 (302)
T ss_pred HHHHHHHhcCc
Confidence 45666666664
No 463
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.05 E-value=2.2e+02 Score=25.34 Aligned_cols=97 Identities=12% Similarity=0.022 Sum_probs=47.5
Q ss_pred cCCCCCCEEEEEeCCC-CCCCHHHHHHHHHHHHHCCCcEEEEEcCC--c-ccHHHHHHHHHHcCCCCCcEEEeccC--CH
Q psy15362 47 YGLPEDAIVYCNFNQL-YKIDPSTLQMWVNVLKAVPNSILWLLKFP--A-VGEANIQATAQALGLDQHRILFSNVA--AK 120 (200)
Q Consensus 47 l~l~~~~~v~~~~~r~-~K~~~~~l~a~~~i~~~~p~~~l~ivG~~--~-~~~~~l~~~~~~~gl~~~rv~f~g~~--~~ 120 (200)
..+|.-..-++.+... .-...+++.. +.++.|.+++.+.... | .....+.+.++...-..--|+.+++= +.
T Consensus 129 ~~lP~~p~~I~viTs~~gAa~~D~~~~---~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~ 205 (438)
T PRK00286 129 KPLPFFPKRIGVITSPTGAAIRDILTV---LRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSL 205 (438)
T ss_pred CCCCCCCCEEEEEeCCccHHHHHHHHH---HHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCH
Confidence 3455544445555444 2334455444 4467888888886531 1 12234444333321100024444432 23
Q ss_pred HHHHhhcccccEEEeCCCCCCchHHHHHHH-cCCCeeecCC
Q psy15362 121 EEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPG 160 (200)
Q Consensus 121 ~~~~~~~~~aDv~l~~~~~~~g~~~lEAma-~G~PVV~~~g 160 (200)
+|+.. |- -..+.+|.+ |-+|||+--|
T Consensus 206 eDL~~-----------Fn---~e~v~~ai~~~~~Pvis~IG 232 (438)
T PRK00286 206 EDLWA-----------FN---DEAVARAIAASRIPVISAVG 232 (438)
T ss_pred HHhhc-----------cC---cHHHHHHHHcCCCCEEEecc
Confidence 44321 11 134667766 8999999766
No 464
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=22.93 E-value=1.3e+02 Score=28.36 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=34.6
Q ss_pred cEEEeCCCCCCchH-----HHHHHHcCCCeeecCCCc--chhhhHHHHHhhcCCCc
Q psy15362 131 DVCLDTPLCNGHTT-----SMDVLWTGTPVVTLPGET--LASRVAASQLATLGCPE 179 (200)
Q Consensus 131 Dv~l~~~~~~~g~~-----~lEAma~G~PVV~~~g~~--~~~r~~~~~~~~~g~~~ 179 (200)
-.++.-|||++++. +.-|+++|-||++.+.+. ...-.+..++.+.|+|.
T Consensus 238 G~vVcISPWNFPLAIFtGqiaAAL~aGN~VlAKPAEqTpLIAa~aV~ll~eAGvP~ 293 (769)
T COG4230 238 GPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQAVRLLHEAGVPP 293 (769)
T ss_pred CcEEEECCCCchHHHHHhHHHHHHHcCCccccCccccccHHHHHHHHHHHHcCCCh
Confidence 35566688888754 678999999999987642 33344556777777764
No 465
>PRK06823 ornithine cyclodeaminase; Validated
Probab=22.87 E-value=3.9e+02 Score=22.72 Aligned_cols=36 Identities=3% Similarity=-0.064 Sum_probs=20.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCC
Q psy15362 82 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 82 ~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~ 119 (200)
..++.++|.|...+..++.+..-..+ ++|++.++.+
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i--~~v~v~~r~~ 163 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDC--RQLWVWGRSE 163 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCC--CEEEEECCCH
Confidence 35677777654444555555554444 5677666654
No 466
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=22.83 E-value=5.8e+02 Score=23.16 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=46.8
Q ss_pred cEEEEEcC----C--cccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHHcCCCee
Q psy15362 83 SILWLLKF----P--AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV 156 (200)
Q Consensus 83 ~~l~ivG~----~--~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma~G~PVV 156 (200)
-++=|+|. - ..+..+|+++++..|++ -+.+|.+-.+.+++.. +..|.+-+..+++ .+..+-| .+|+|.+
T Consensus 153 ~~VNIiG~~~g~~~~~~Dl~ElkrlL~~~Gi~-vn~v~~~Gtsv~di~~-l~~A~~nIv~~~~-~a~~L~e--~~GvP~l 227 (468)
T TIGR02014 153 PRVNIIGPTYGCFNMPSDLAEIRRLVEGIGAE-VAHVYPLGSHLAEITK-LKNADANIVMYRE-FGRGLAE--KLGKPYL 227 (468)
T ss_pred CeEEEECCCcCcCCChhHHHHHHHHHHHcCCc-EEEEcCCcCCHHHHHh-hccCcEEEeecHH-HHHHHHH--HHCCCcc
Confidence 45667762 1 12347899999999997 6677777677788776 5667777655442 2232222 4799997
Q ss_pred ecC
Q psy15362 157 TLP 159 (200)
Q Consensus 157 ~~~ 159 (200)
..+
T Consensus 228 ~~P 230 (468)
T TIGR02014 228 QAP 230 (468)
T ss_pred ccC
Confidence 643
No 467
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=22.81 E-value=3.4e+02 Score=22.81 Aligned_cols=73 Identities=5% Similarity=-0.055 Sum_probs=41.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCC--H--------HHHHhhcccccEEEeCCCCC--C---------
Q psy15362 83 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--K--------EEHVRRGQLADVCLDTPLCN--G--------- 141 (200)
Q Consensus 83 ~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~--~--------~~~~~~~~~aDv~l~~~~~~--~--------- 141 (200)
.++.++|+. ..+-.+.+...+.|.+ |...|+-+ + ......++.+|+.+.|.|.. +
T Consensus 3 ~~~~v~ggd-~r~~~~~~~l~~~G~~---v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 3 KHIAVIGGD-ARQLELIRKLVELGAK---VSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred cEEEEEcCc-HHHHHHHHHHHHCCCE---EEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 467888842 1122333444455765 66666532 1 01123467899999874431 1
Q ss_pred -----chHHHHHHHcCCCeeecC
Q psy15362 142 -----HTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 142 -----g~~~lEAma~G~PVV~~~ 159 (200)
....++.|--|..+++..
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~~G~ 101 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIFSGI 101 (296)
T ss_pred cCCcchHHHHHhcCCCCEEEEec
Confidence 135788888897777643
No 468
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=22.75 E-value=4.7e+02 Score=22.05 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=43.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC-chHHHHHHHcCCCeeec
Q psy15362 80 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTL 158 (200)
Q Consensus 80 ~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~~ 158 (200)
.++..+.-+.+..+....+ +.++++|+. ..+.+ .+++.. -...|+.++..+... --....|+..|++|+..
T Consensus 23 ~~~~elvaV~d~d~es~~l-a~A~~~Gi~---~~~~~---~e~ll~-~~dIDaV~iaTp~~~H~e~a~~al~aGk~VIde 94 (285)
T TIGR03215 23 SEHLEMVAMVGIDPESDGL-ARARELGVK---TSAEG---VDGLLA-NPDIDIVFDATSAKAHARHARLLAELGKIVIDL 94 (285)
T ss_pred CCCcEEEEEEeCCcccHHH-HHHHHCCCC---EEECC---HHHHhc-CCCCCEEEECCCcHHHHHHHHHHHHcCCEEEEC
Confidence 6788888766433333333 467778875 33333 244432 235788877665443 34578899999999864
No 469
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=22.66 E-value=4.2e+02 Score=21.48 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=34.7
Q ss_pred CCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEEcCCcc---cHHHHHHHHHHcCCC
Q psy15362 49 LPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAV---GEANIQATAQALGLD 108 (200)
Q Consensus 49 l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~---~~~~l~~~~~~~gl~ 108 (200)
+++-.+++.+.. |+++.-.+.+++++ .+++.+|++...+ .+..+++.++++|+.
T Consensus 49 i~~~Dl~I~y~l-----HPDl~~~l~~~~~e-~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~ 105 (217)
T PF02593_consen 49 IPEADLLIAYGL-----HPDLTYELPEIAKE-AGVKAVIVPSESPKPGLRRQLKKQLEEFGIE 105 (217)
T ss_pred CCCCCEEEEecc-----CchhHHHHHHHHHH-cCCCEEEEecCCCccchHHHHHHHHHhcCce
Confidence 666666655432 56666666666665 5678888774211 245788888888875
No 470
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=22.60 E-value=4e+02 Score=22.72 Aligned_cols=11 Identities=9% Similarity=0.018 Sum_probs=4.5
Q ss_pred HHHHHHHHcCC
Q psy15362 97 NIQATAQALGL 107 (200)
Q Consensus 97 ~l~~~~~~~gl 107 (200)
.+.++++++++
T Consensus 53 ~l~~~~~~~~i 63 (380)
T TIGR01142 53 ALRAVIEREKP 63 (380)
T ss_pred HHHHHHHHhCC
Confidence 34444444333
No 471
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=22.56 E-value=1e+02 Score=24.34 Aligned_cols=20 Identities=10% Similarity=-0.085 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHCCCcEEEEE
Q psy15362 69 TLQMWVNVLKAVPNSILWLL 88 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~iv 88 (200)
+.+-+.++.++.|+.++.++
T Consensus 152 ~~~el~~~~~~~~~~~~~~~ 171 (235)
T cd06217 152 FRDELEQLARRHPNLHVTEA 171 (235)
T ss_pred HHHHHHHHHHHCCCeEEEEE
Confidence 34455555556666665544
No 472
>PLN00135 malate dehydrogenase
Probab=22.54 E-value=4.9e+02 Score=22.16 Aligned_cols=64 Identities=6% Similarity=-0.194 Sum_probs=36.9
Q ss_pred CCEEEEEeCCCCCC-CH----------HHHHHHHHHHHH-CCCcEEEEEcCCcccHHHHHH-HHHHcCCCCCcEEEeccC
Q psy15362 52 DAIVYCNFNQLYKI-DP----------STLQMWVNVLKA-VPNSILWLLKFPAVGEANIQA-TAQALGLDQHRILFSNVA 118 (200)
Q Consensus 52 ~~~v~~~~~r~~K~-~~----------~~l~a~~~i~~~-~p~~~l~ivG~~~~~~~~l~~-~~~~~gl~~~rv~f~g~~ 118 (200)
-.+++.+.|.+.|- .. .+-+...+|.+. .|++.+++++. |- +.+-. ..+..|+.+.||+..|-.
T Consensus 59 aDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsN--Pv-Dv~t~~~~~~sg~~~~~vig~gt~ 135 (309)
T PLN00135 59 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVAN--PA-NTNALILKEFAPSIPEKNITCLTR 135 (309)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCC--cH-HHHHHHHHHHcCCCCccEEEeeeh
Confidence 35777777765542 11 122333445563 69999999984 32 33332 333446666788888754
No 473
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=22.43 E-value=4.8e+02 Score=22.09 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=56.5
Q ss_pred eCeeecccccccccCCCCCCCCCCCchh---hhhhhhhcCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEEE
Q psy15362 12 NGIVLQNGLATNQTNTKTATGEEVPQSI---VITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLL 88 (200)
Q Consensus 12 ~gi~i~ng~~~~~~~~~~~~~~~~~~~~---~~~~R~~l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~iv 88 (200)
.++|+.|+-+-+.+. |.+. ...+++.+|- -+...+..+|... +......|..++.+. ++.+.++
T Consensus 116 s~vPVINa~~g~~~H---------PtQ~LaDl~Ti~e~~g~-l~g~~va~vGD~~--~~~v~~Sl~~~~a~~-g~~v~~~ 182 (301)
T TIGR00670 116 SEVPVINAGDGSNQH---------PTQTLLDLYTIYEEFGR-LDGLKIALVGDLK--YGRTVHSLAEALTRF-GVEVYLI 182 (301)
T ss_pred CCCCEEeCCCCCCCC---------cHHHHHHHHHHHHHhCC-CCCCEEEEEccCC--CCcHHHHHHHHHHHc-CCEEEEE
Confidence 467888888644322 2221 2456667772 2234445555331 113556666666666 4889898
Q ss_pred cCCcc-cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeC
Q psy15362 89 KFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT 136 (200)
Q Consensus 89 G~~~~-~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~ 136 (200)
+..+. ..+.+.+.+++.|.. |.+.. +....++.||++...
T Consensus 183 ~P~~~~~~~~~~~~~~~~G~~---v~~~~-----d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 183 SPEELRMPKEILEELKAKGIK---VRETE-----SLEEVIDEADVLYVT 223 (301)
T ss_pred CCccccCCHHHHHHHHHcCCE---EEEEC-----CHHHHhCCCCEEEEC
Confidence 75332 224455556655543 44432 344456789988543
No 474
>PRK08444 hypothetical protein; Provisional
Probab=22.34 E-value=4.1e+02 Score=23.08 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=32.4
Q ss_pred CchhhhhhhhhcCCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEE
Q psy15362 36 PQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWL 87 (200)
Q Consensus 36 ~~~~~~~~R~~l~l~~~~~v~~~~~r~~K~~~~~l~a~~~i~~~~p~~~l~i 87 (200)
++++....++.....-..+.+.+-.++....+.+.+++..|.+..|+.++-.
T Consensus 82 ~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a 133 (353)
T PRK08444 82 HEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKA 133 (353)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEee
Confidence 3444555555433333446555444554455788899999999999877654
No 475
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=22.33 E-value=82 Score=26.50 Aligned_cols=89 Identities=11% Similarity=0.074 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCch
Q psy15362 64 KIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHT 143 (200)
Q Consensus 64 K~~~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~ 143 (200)
...+..+.-+..+ ...|+.+.+++....++...--+.+++.. +|=+.|.|.. +++-.-+-+.+|+.+++-....|.
T Consensus 45 ~e~EttIskI~~l-AdDp~mKaIVv~q~vpGt~~af~kIkekR--pDIl~ia~~~-~EDp~~i~~~aDi~~~~D~~~~G~ 120 (275)
T PF12683_consen 45 SEQETTISKIVSL-ADDPDMKAIVVSQAVPGTAEAFRKIKEKR--PDILLIAGEP-HEDPEVISSAADIVVNPDEISRGY 120 (275)
T ss_dssp GCHHHHHHHHHGG-GG-TTEEEEEEE-SS---HHHHHHHHHH---TTSEEEESS---S-HHHHHHHSSEEEE--HHHHHH
T ss_pred chHHHHHHHHHHh-ccCCCccEEEEeCCCcchHHHHHHHHhcC--CCeEEEcCCC-cCCHHHHhhccCeEeccchhhccH
Confidence 3334444333322 34678887777653333222222333322 2445555543 344443446788888754333343
Q ss_pred -HHHHHHHcCCCee
Q psy15362 144 -TSMDVLWTGTPVV 156 (200)
Q Consensus 144 -~~lEAma~G~PVV 156 (200)
.+.-|--+|.=..
T Consensus 121 ~i~~~Ak~mGAktF 134 (275)
T PF12683_consen 121 TIVWAAKKMGAKTF 134 (275)
T ss_dssp HHHHHHHHTT-S-E
T ss_pred HHHHHHHHcCCceE
Confidence 3333444554443
No 476
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=22.30 E-value=3.4e+02 Score=21.63 Aligned_cols=9 Identities=11% Similarity=-0.057 Sum_probs=4.9
Q ss_pred CcEEEEEcC
Q psy15362 82 NSILWLLKF 90 (200)
Q Consensus 82 ~~~l~ivG~ 90 (200)
+-+++++|+
T Consensus 34 ~d~lvflGD 42 (222)
T cd07413 34 ERQVVFLGD 42 (222)
T ss_pred CCEEEEeCc
Confidence 345666664
No 477
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=22.30 E-value=2.2e+02 Score=22.68 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=39.6
Q ss_pred HHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCC--HHHHHhhcccccEEEe
Q psy15362 70 LQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--KEEHVRRGQLADVCLD 135 (200)
Q Consensus 70 l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~--~~~~~~~~~~aDv~l~ 135 (200)
++...+++++.|+++.+++- +|..+.|++.....|-+ +.-....++. ..|+. .+...|-++.
T Consensus 102 ~qGa~qvk~~~p~~v~IFi~--pPs~eeL~~RL~~Rgtd-s~e~I~~Rl~~a~~Ei~-~~~~fdyviv 165 (191)
T COG0194 102 VQGALQVKKKMPNAVSIFIL--PPSLEELERRLKGRGTD-SEEVIARRLENAKKEIS-HADEFDYVIV 165 (191)
T ss_pred hHHHHHHHHhCCCeEEEEEc--CCCHHHHHHHHHccCCC-CHHHHHHHHHHHHHHHH-HHHhCCEEEE
Confidence 34567789999999999985 36788888888777765 3333333332 23433 3445666653
No 478
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=22.29 E-value=1.1e+02 Score=24.93 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred cccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 129 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 129 ~aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
.=|+++...+...-..+.||.-.|.|+|+..
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~iv 185 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIV 185 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEe
Confidence 4577765555555688999999999999853
No 479
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.27 E-value=5.1e+02 Score=23.38 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=20.3
Q ss_pred cccccEEEeCCCCCC-chHHHHHHHcCCCeee
Q psy15362 127 GQLADVCLDTPLCNG-HTTSMDVLWTGTPVVT 157 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~-g~~~lEAma~G~PVV~ 157 (200)
+..+|+++.+.-..- .-.+.+|...|+||++
T Consensus 68 l~~~D~VV~SpGi~~~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 68 IADYALVVTSPGFRPTAPVLAAAAAAGVPIWG 99 (488)
T ss_pred hhcCCEEEECCCCCCCCHHHHHHHHCCCcEee
Confidence 356899987653322 2346677788888876
No 480
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=22.21 E-value=4.1e+02 Score=21.21 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEE--eccCCHHHHHhhcccccEEEeCCCCCCchHHH
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILF--SNVAAKEEHVRRGQLADVCLDTPLCNGHTTSM 146 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f--~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~l 146 (200)
-..++....++.+ -.++.+|..+...-++-+++++-++.|.=|+= .|++.-.|-. -
T Consensus 107 s~aa~~~a~~~~~-~~I~vIGNAPTAL~~ll~li~~~~~~PalVIg~PVGFV~A~ESK---------------------e 164 (198)
T PF02570_consen 107 SAAAMRKAAKELP-GAIVVIGNAPTALFELLELIEEGGVRPALVIGVPVGFVGAAESK---------------------E 164 (198)
T ss_dssp HHHHHHHHHCTTT-TCEEEESS-HHHHHHHHHHHHTTT-TTSEEEE---SSSSHHHHH---------------------H
T ss_pred HHHHHHHHHHHcC-CcEEEEeCcHHHHHHHHHHHHhcCCCCcEEEECCCcccCcHHHH---------------------H
Confidence 3444454444443 34445565322334555666665665332222 3444332222 2
Q ss_pred HHHHcCCCeeecCCCcchhhhHHHHH
Q psy15362 147 DVLWTGTPVVTLPGETLASRVAASQL 172 (200)
Q Consensus 147 EAma~G~PVV~~~g~~~~~r~~~~~~ 172 (200)
+-+.+++|.|+..|..=-+-+.++++
T Consensus 165 ~L~~~~vP~I~~~G~kGGS~vAaAiv 190 (198)
T PF02570_consen 165 ALMQSGVPYITVRGRKGGSPVAAAIV 190 (198)
T ss_dssp HHHHSTS-EEEESSS---HHHHHHHH
T ss_pred HHHhCCCCEEEEecCCCCHHHHHHHH
Confidence 23446899998876532233333433
No 481
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=22.20 E-value=99 Score=24.32 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHCCCcEEEEE
Q psy15362 69 TLQMWVNVLKAVPNSILWLL 88 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~iv 88 (200)
+.+-+.++.++.++.++.++
T Consensus 148 ~~~~l~~l~~~~~~~~~~~~ 167 (231)
T cd06215 148 FADELEELARRHPNFRLHLI 167 (231)
T ss_pred HHHHHHHHHHHCCCeEEEEE
Confidence 44555666666677665543
No 482
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=22.15 E-value=2.5e+02 Score=23.92 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=38.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCH--HHHH------------------hhcccccEEEeCCCCCCc
Q psy15362 83 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK--EEHV------------------RRGQLADVCLDTPLCNGH 142 (200)
Q Consensus 83 ~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~--~~~~------------------~~~~~aDv~l~~~~~~~g 142 (200)
.++.++|.|+..+..++.++...++ ++|.+.++.+. +++. ..++.+|+++.+.+-..+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i--~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~p 207 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDI--RSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSETP 207 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCc--cEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCCc
Confidence 4788888765555556666555565 56766666531 2221 123567887765443333
Q ss_pred hHHHHHHHcCCCee
Q psy15362 143 TTSMDVLWTGTPVV 156 (200)
Q Consensus 143 ~~~lEAma~G~PVV 156 (200)
....|.+-.|.-+.
T Consensus 208 ~i~~~~l~~g~~i~ 221 (326)
T TIGR02992 208 ILHAEWLEPGQHVT 221 (326)
T ss_pred EecHHHcCCCcEEE
Confidence 33344444555443
No 483
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=22.12 E-value=3e+02 Score=19.59 Aligned_cols=47 Identities=6% Similarity=0.036 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCcccHHH---HHHHHHHcCCCCCcEEEe
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPAVGEAN---IQATAQALGLDQHRILFS 115 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~~~~~~---l~~~~~~~gl~~~rv~f~ 115 (200)
+.+...+.+..++.|+..+++.+++....+. +-..+++.|+ .+|-+.
T Consensus 70 ~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~--~~v~l~ 119 (122)
T TIGR02803 70 ETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQAGY--LKIGLV 119 (122)
T ss_pred HHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCC--CEEEEE
Confidence 4566667777777899999998875433343 3467888888 466664
No 484
>PRK01254 hypothetical protein; Provisional
Probab=22.02 E-value=3.1e+02 Score=26.39 Aligned_cols=53 Identities=6% Similarity=0.045 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHCC-CcE---EEEEcCCcccH---HHHHHHHHHcCCCCCcEEEeccCC
Q psy15362 67 PSTLQMWVNVLKAVP-NSI---LWLLKFPAVGE---ANIQATAQALGLDQHRILFSNVAA 119 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p-~~~---l~ivG~~~~~~---~~l~~~~~~~gl~~~rv~f~g~~~ 119 (200)
..+.+.|.++.++.| +.. .+|+|.++... .++.+++++++..+++|...-..|
T Consensus 540 e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP 599 (707)
T PRK01254 540 DRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSP 599 (707)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCC
Confidence 678888889988888 333 36788655433 456677888888767766554454
No 485
>KOG1467|consensus
Probab=21.98 E-value=1.9e+02 Score=26.55 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=45.1
Q ss_pred HHHCCCcEEEEEcCCcc--cHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhccccc-EEEe-------CCCCC--C-ch
Q psy15362 77 LKAVPNSILWLLKFPAV--GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD-VCLD-------TPLCN--G-HT 143 (200)
Q Consensus 77 ~~~~p~~~l~ivG~~~~--~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aD-v~l~-------~~~~~--~-g~ 143 (200)
.+..++.++++|...+. ++..++++. ..|+.-.++++.+ + .+ ++..++ +||- -+-|. | ..
T Consensus 380 ~~~~k~frVvVVDSRP~~EG~~~lr~Lv-~~GinctYv~I~a-~---sy--im~evtkvfLGahailsNG~vysR~GTa~ 452 (556)
T KOG1467|consen 380 KELGKKFRVVVVDSRPNLEGRKLLRRLV-DRGINCTYVLINA-A---SY--IMLEVTKVFLGAHAILSNGAVYSRVGTAC 452 (556)
T ss_pred HHhCcceEEEEEeCCCCcchHHHHHHHH-HcCCCeEEEEehh-H---HH--HHHhcceeeechhhhhcCcchhhhcchHH
Confidence 34568899999975432 233455554 4599734444322 1 11 122222 3332 22222 2 34
Q ss_pred HHHHHHHcCCCeeecCCC-cchhhhH
Q psy15362 144 TSMDVLWTGTPVVTLPGE-TLASRVA 168 (200)
Q Consensus 144 ~~lEAma~G~PVV~~~g~-~~~~r~~ 168 (200)
..+=|=+..+||++.... -|.+|+.
T Consensus 453 valvAna~nVPVlVCCE~yKF~eRvQ 478 (556)
T KOG1467|consen 453 VALVANAFNVPVLVCCEAYKFHERVQ 478 (556)
T ss_pred HHHHhcccCCCEEEEechhhhhhhhh
Confidence 577788899999986543 3445543
No 486
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.96 E-value=3.2e+02 Score=22.47 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCCCcEEEecc-CCHHHHHhhccccc--EEEeCCC-CCCc-----hHHHHHH---H--cCCCeeecCCC
Q psy15362 96 ANIQATAQALGLDQHRILFSNV-AAKEEHVRRGQLAD--VCLDTPL-CNGH-----TTSMDVL---W--TGTPVVTLPGE 161 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~-~~~~~~~~~~~~aD--v~l~~~~-~~~g-----~~~lEAm---a--~G~PVV~~~g~ 161 (200)
..+.+.++++|+ +.+.+... .+.+.+..+.+.+| +++.+.. ++|. ..+.|-+ . .++|+++--|-
T Consensus 130 ~~~~~~~~~~gl--~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI 207 (256)
T TIGR00262 130 GDLVEAAKKHGV--KPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGI 207 (256)
T ss_pred HHHHHHHHHCCC--cEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCC
Confidence 467778899998 44655444 55677777777888 5554432 2221 1122222 2 57898875543
No 487
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=21.95 E-value=3.1e+02 Score=21.97 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCCCcEEEeccCC--HHHHHhhcccccEEEeCC--C-CCCchHHHHHHHcCCCe
Q psy15362 96 ANIQATAQALGLDQHRILFSNVAA--KEEHVRRGQLADVCLDTP--L-CNGHTTSMDVLWTGTPV 155 (200)
Q Consensus 96 ~~l~~~~~~~gl~~~rv~f~g~~~--~~~~~~~~~~aDv~l~~~--~-~~~g~~~lEAma~G~PV 155 (200)
..+.+.+++++. |-|.+.||+. ..++...|..==+-+.|| | |.|-.+.-+|+.+|+.+
T Consensus 69 ~~l~~~l~~~~~--dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~aG~k~ 131 (200)
T COG0299 69 RALVEALDEYGP--DLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEAGVKV 131 (200)
T ss_pred HHHHHHHHhcCC--CEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHcCCCc
Confidence 455566777665 7899999976 366776666644557887 3 55667889999999987
No 488
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.91 E-value=3e+02 Score=23.14 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHC----CCcEEEEEcCCc-ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCC
Q psy15362 67 PSTLQMWVNVLKAV----PNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG 141 (200)
Q Consensus 67 ~~~l~a~~~i~~~~----p~~~l~ivG~~~-~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~ 141 (200)
+-+..++.++++.+ .+-+.+++|.++ ..++ +-.++.+.|. .|+...+.. .++...++.+|+++.+.....
T Consensus 140 p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkp-ia~~L~~~ga---tVtv~~~~t-~~L~~~~~~aDIvI~AtG~~~ 214 (283)
T PRK14192 140 SATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKP-MAMMLLNANA---TVTICHSRT-QNLPELVKQADIIVGAVGKPE 214 (283)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHH-HHHHHHhCCC---EEEEEeCCc-hhHHHHhccCCEEEEccCCCC
Confidence 33447777777654 356899999765 3444 4444445454 477766633 466667789999998763222
Q ss_pred chHHHHHHHcCCCe
Q psy15362 142 HTTSMDVLWTGTPV 155 (200)
Q Consensus 142 g~~~lEAma~G~PV 155 (200)
....|-+.-|.=|
T Consensus 215 -~v~~~~lk~gavV 227 (283)
T PRK14192 215 -LIKKDWIKQGAVV 227 (283)
T ss_pred -cCCHHHcCCCCEE
Confidence 2223444445333
No 489
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=21.89 E-value=1.1e+02 Score=24.36 Aligned_cols=30 Identities=7% Similarity=0.071 Sum_probs=23.2
Q ss_pred ccEEEeCCCCCCchHHHHHHHcCCCeeecC
Q psy15362 130 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 159 (200)
Q Consensus 130 aDv~l~~~~~~~g~~~lEAma~G~PVV~~~ 159 (200)
-|+++..-+......+-||..+|+|+|+..
T Consensus 144 P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~ 173 (211)
T PF00318_consen 144 PDLVIILDPNKNKNAIREANKLNIPTIAIV 173 (211)
T ss_dssp BSEEEESSTTTTHHHHHHHHHTTS-EEEEE
T ss_pred CcEEEEecccccchhHHHHHhcCceEEEee
Confidence 577776666566788999999999999853
No 490
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.88 E-value=4.6e+02 Score=21.63 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=48.6
Q ss_pred HHHHcCCCCCcEEE-eccCCHHHHHhhcc--cccEEEeC-CCCCCc--hHHHHHHHcCCCeeecCCCcchhhhHHHHHhh
Q psy15362 101 TAQALGLDQHRILF-SNVAAKEEHVRRGQ--LADVCLDT-PLCNGH--TTSMDVLWTGTPVVTLPGETLASRVAASQLAT 174 (200)
Q Consensus 101 ~~~~~gl~~~rv~f-~g~~~~~~~~~~~~--~aDv~l~~-~~~~~g--~~~lEAma~G~PVV~~~g~~~~~r~~~~~~~~ 174 (200)
.+.++|+.+++++. .|..+.+.=..+++ .+|++|.- |-..|| -.+--|+.+|+|||.-.-+...
T Consensus 166 ~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~---------- 235 (256)
T TIGR00715 166 QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTI---------- 235 (256)
T ss_pred HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCC----------
Confidence 67778887666655 66666443334443 57888753 222233 2466778899999985322110
Q ss_pred cCCCcceecCHHHHHHHHHHhh
Q psy15362 175 LGCPELIARTHKEYQDIAIRLG 196 (200)
Q Consensus 175 ~g~~~~ia~~~~~yv~~a~~l~ 196 (200)
-+..+..+.++.+++..+++
T Consensus 236 --~~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 236 --PGVAIFDDISQLNQFVARLL 255 (256)
T ss_pred --CCCccCCCHHHHHHHHHHhc
Confidence 01134577777777665543
No 491
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=21.87 E-value=2.4e+02 Score=23.34 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCH--HHHH----------------hhcccccEEEeCCCC
Q psy15362 81 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK--EEHV----------------RRGQLADVCLDTPLC 139 (200)
Q Consensus 81 p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~--~~~~----------------~~~~~aDv~l~~~~~ 139 (200)
.+.+.+++|.|+..+..+..+ ..+|+ .+|++..+.+. +++. ..+..+|+++++.|.
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL-~~~g~--~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~ 195 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPL-LDLGV--AEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSA 195 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHH-HHcCC--CEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcC
Confidence 356777888654443433433 35565 45777666431 1111 223568999887653
No 492
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=21.85 E-value=4e+02 Score=23.59 Aligned_cols=79 Identities=13% Similarity=0.033 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCC-CchHHHH
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMD 147 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~-~g~~~lE 147 (200)
-.-++++++.+. ...+... +.....+... ..+++|+. ++.|.-+ +. +...+|+++.++-.. ..--+.+
T Consensus 11 gm~~la~~l~~~-G~~V~~~-D~~~~~~~~~-~l~~~gi~----~~~~~~~-~~---~~~~~d~vV~SpgI~~~~~~~~~ 79 (448)
T TIGR01081 11 FMGGLAMIAKQL-GHEVTGS-DANVYPPMST-QLEAQGIE----IIEGFDA-AQ---LEPKPDLVVIGNAMKRGNPCVEA 79 (448)
T ss_pred hHHHHHHHHHhC-CCEEEEE-CCCCCcHHHH-HHHHCCCE----EeCCCCH-HH---CCCCCCEEEECCCCCCCCHHHHH
Confidence 356777777765 3443332 2222222222 24555764 4456543 22 234689988765332 2234777
Q ss_pred HHHcCCCeeec
Q psy15362 148 VLWTGTPVVTL 158 (200)
Q Consensus 148 Ama~G~PVV~~ 158 (200)
|...|+||+..
T Consensus 80 a~~~~i~v~~~ 90 (448)
T TIGR01081 80 VLNLNLPYTSG 90 (448)
T ss_pred HHHCCCCEEeH
Confidence 78888888863
No 493
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=21.83 E-value=4.4e+02 Score=23.19 Aligned_cols=74 Identities=9% Similarity=-0.008 Sum_probs=48.6
Q ss_pred cEEEEEcCCc--ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH--cCCCeeec
Q psy15362 83 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVTL 158 (200)
Q Consensus 83 ~~l~ivG~~~--~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~PVV~~ 158 (200)
-.+-++|... .+.+++++++++.|+. -...|.|..+.+++.. +..|.+-+..++.. +..+.+.|. .|+|.+..
T Consensus 163 ~~VNliG~~~~~~d~~ei~~lL~~~Gl~-v~~~~~~~~t~~ei~~-~~~A~lnlv~~~~~-~~~~A~~L~er~GiP~~~~ 239 (415)
T cd01977 163 YTINYIGDYNIQGDTEVLQKYFERMGIQ-VLSTFTGNGTYDDLRW-MHRAKLNVVNCARS-AGYIANELKKRYGIPRLDV 239 (415)
T ss_pred CcEEEEccCCCcccHHHHHHHHHHcCCe-EEEEECCCCCHHHHHh-cccCCEEEEEchhH-HHHHHHHHHHHhCCCeEEe
Confidence 4566667422 2346799999999997 4457888888888876 55666665444322 234555554 69999965
Q ss_pred C
Q psy15362 159 P 159 (200)
Q Consensus 159 ~ 159 (200)
+
T Consensus 240 ~ 240 (415)
T cd01977 240 D 240 (415)
T ss_pred c
Confidence 4
No 494
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=21.76 E-value=4.5e+02 Score=21.46 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCc----ccHHHHHHHHHHcCCCCCcEEEe---ccCCHHHHHh---hcccccEEEeC
Q psy15362 67 PSTLQMWVNVLKAVPNSILWLLKFPA----VGEANIQATAQALGLDQHRILFS---NVAAKEEHVR---RGQLADVCLDT 136 (200)
Q Consensus 67 ~~~l~a~~~i~~~~p~~~l~ivG~~~----~~~~~l~~~~~~~gl~~~rv~f~---g~~~~~~~~~---~~~~aDv~l~~ 136 (200)
..-+++..++-++..=..|++-|+.. .+-..+++-....|+. ...+|+ |+...+-+.+ .+..-+..+-|
T Consensus 79 ~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp-~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIIt 157 (235)
T COG2949 79 TYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVP-AKNIFLDYAGFRTLDSVVRARKVFGTNDFTIIT 157 (235)
T ss_pred HHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCC-HHHeeecccCccHHHHHHHHHHHcCcCcEEEEe
Confidence 44567777777766656777777632 1224577777778997 555554 4443332222 24445556666
Q ss_pred CCCCCchHHHHHHHcCCCeeecCC
Q psy15362 137 PLCNGHTTSMDVLWTGTPVVTLPG 160 (200)
Q Consensus 137 ~~~~~g~~~lEAma~G~PVV~~~g 160 (200)
-.|...-++.=|+.+|+--++..-
T Consensus 158 Q~FHceRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 158 QRFHCERALFIARQMGIDAICFAA 181 (235)
T ss_pred cccccHHHHHHHHHhCCceEEecC
Confidence 666667889999999999998643
No 495
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=21.56 E-value=3.9e+02 Score=26.00 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc-----------CCH-----------HHHHhh
Q psy15362 69 TLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-----------AAK-----------EEHVRR 126 (200)
Q Consensus 69 ~l~a~~~i~~~~p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~-----------~~~-----------~~~~~~ 126 (200)
++.++...-++..+.++++.|.| ..--.+-+++...|+..+|+.+... ++. ..+...
T Consensus 172 l~na~~~~~~~~~~~~iv~~GaG-aag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~ 250 (752)
T PRK07232 172 LLNALELVGKKIEDVKIVVSGAG-AAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEA 250 (752)
T ss_pred HHHHHHHhCCChhhcEEEEECcc-HHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHH
Confidence 33444433344568999999864 3223345555567885357766542 111 124445
Q ss_pred cccccEEEeCCCCCC--chHHHHHHHcCCCeee
Q psy15362 127 GQLADVCLDTPLCNG--HTTSMDVLWTGTPVVT 157 (200)
Q Consensus 127 ~~~aDv~l~~~~~~~--g~~~lEAma~G~PVV~ 157 (200)
++.+|+|+-.|. .| .--.+++|+- .|+|-
T Consensus 251 i~~~~v~iG~s~-~g~~~~~~v~~M~~-~piif 281 (752)
T PRK07232 251 IEGADVFLGLSA-AGVLTPEMVKSMAD-NPIIF 281 (752)
T ss_pred HcCCCEEEEcCC-CCCCCHHHHHHhcc-CCEEE
Confidence 667899987664 33 3469999984 89984
No 496
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=21.54 E-value=4e+02 Score=20.83 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEeccCCH----HHHHhh--cccccEEEeCCCCCCchHHHHHH-----
Q psy15362 81 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK----EEHVRR--GQLADVCLDTPLCNGHTTSMDVL----- 149 (200)
Q Consensus 81 p~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~~~~----~~~~~~--~~~aDv~l~~~~~~~g~~~lEAm----- 149 (200)
.+-++++..+ ....+.+.+.+++.|.....+...-..+. .+.... -...|+++.+|+.+- ..+++.+
T Consensus 124 ~~~~ili~~~-~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v-~~~~~~~~~~~~ 201 (249)
T PRK05928 124 KGKRVLYLRG-NGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTV-RAFFSLAPELGR 201 (249)
T ss_pred CCCEEEEECC-CCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHH-HHHHHHhcccch
Confidence 4567777764 34567888888888875444444433321 122211 146899998886321 1122222
Q ss_pred ---HcCCCeeecCCCcchhhhHHHHHhhcCCCcc-ee--cCHHHHHHHHHH
Q psy15362 150 ---WTGTPVVTLPGETLASRVAASQLATLGCPEL-IA--RTHKEYQDIAIR 194 (200)
Q Consensus 150 ---a~G~PVV~~~g~~~~~r~~~~~~~~~g~~~~-ia--~~~~~yv~~a~~ 194 (200)
..++++++. +...+..++..|.... ++ .+.+++++.+..
T Consensus 202 ~~~~~~~~~~ai------G~~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~ 246 (249)
T PRK05928 202 REWLLSCKAVVI------GERTAEALRELGIKVIIVPDSADNEALLRALKE 246 (249)
T ss_pred hHHHhCCeEEEe------CHHHHHHHHHcCCCcceecCCCChHHHHHHHHH
Confidence 124555543 3345566778887654 44 355666665544
No 497
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=21.51 E-value=3.8e+02 Score=22.40 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=18.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHHcCCCCCcEEEecc
Q psy15362 82 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV 117 (200)
Q Consensus 82 ~~~l~ivG~~~~~~~~l~~~~~~~gl~~~rv~f~g~ 117 (200)
+-+.+++|.||..+..+-.++ ++|. .+|.+..+
T Consensus 127 ~k~vlilGaGGaarAi~~aL~-~~g~--~~i~i~nR 159 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALV-THGV--QKLQVADL 159 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHH-HCCC--CEEEEEcC
Confidence 456778887655444444443 3565 34555554
No 498
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=21.48 E-value=2.7e+02 Score=25.48 Aligned_cols=72 Identities=11% Similarity=0.020 Sum_probs=51.6
Q ss_pred cEEEEEcCCc------ccHHHHHHHHHHcCCCCCcEEEeccCCHHHHHhhcccccEEEeCCCCCCchHHHHHHH--cCCC
Q psy15362 83 SILWLLKFPA------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTP 154 (200)
Q Consensus 83 ~~l~ivG~~~------~~~~~l~~~~~~~gl~~~rv~f~g~~~~~~~~~~~~~aDv~l~~~~~~~g~~~lEAma--~G~P 154 (200)
-++=|+|... .+..+++++++..|+. =+++|.+.-+.+|+.. +..|++-|..+++ .|..+.|.|- .|+|
T Consensus 164 ~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~-vn~v~~~g~sl~di~~-~~~A~~NIvl~~~-~g~~~A~~Le~~fgiP 240 (513)
T CHL00076 164 PSVNIIGIFTLGFHNQHDCRELKRLLQDLGIE-INQIIPEGGSVEDLKN-LPKAWFNIVPYRE-VGLMTAKYLEKEFGMP 240 (513)
T ss_pred CcEEEEecCCCCCCCcchHHHHHHHHHHCCCe-EEEEECCCCCHHHHHh-cccCcEEEEechh-hhHHHHHHHHHHhCCC
Confidence 3466776321 2347899999999997 6778877777788876 5677777766553 4566777776 6999
Q ss_pred eee
Q psy15362 155 VVT 157 (200)
Q Consensus 155 VV~ 157 (200)
.+.
T Consensus 241 ~i~ 243 (513)
T CHL00076 241 YIS 243 (513)
T ss_pred eEe
Confidence 986
No 499
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.46 E-value=4.1e+02 Score=20.92 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=8.7
Q ss_pred HHHHHcCCCCCcEEEeccC
Q psy15362 100 ATAQALGLDQHRILFSNVA 118 (200)
Q Consensus 100 ~~~~~~gl~~~rv~f~g~~ 118 (200)
+.++++|+. +.+.+.|+-
T Consensus 202 ~al~~~g~~-~di~vvg~d 219 (277)
T cd06319 202 DAIATAGKT-GKVLLICFD 219 (277)
T ss_pred HHHHHcCCC-CCEEEEEcC
Confidence 344445554 555555543
No 500
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=21.35 E-value=1.4e+02 Score=23.12 Aligned_cols=8 Identities=0% Similarity=0.094 Sum_probs=3.6
Q ss_pred CcEEEecc
Q psy15362 110 HRILFSNV 117 (200)
Q Consensus 110 ~rv~f~g~ 117 (200)
..+.+.|.
T Consensus 177 ~~vyicGp 184 (211)
T cd06185 177 THVYVCGP 184 (211)
T ss_pred CEEEEECC
Confidence 34444444
Done!