RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15362
(200 letters)
>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41. This
family of glycosyltransferases includes O-linked
beta-N-acetylglucosamine (O-GlcNAc) transferase, an
enzyme which catalyzes the addition of O-GlcNAc to
serine and threonine residues. In addition to its
function as an O-GlcNAc transferase, human OGT, also
appears to proteolytically cleave the epigenetic
cell-cycle regulator HCF-1.
Length = 468
Score = 394 bits (1014), Expect = e-138
Identities = 156/200 (78%), Positives = 181/200 (90%)
Query: 1 MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFN 60
MI +GQ+Q ++NG+ +QNGLAT QTN K ATGEEVP++I++T+RQQYGLP+DAIVYCNFN
Sbjct: 233 MINTGQIQITINGVPIQNGLATTQTNNKAATGEEVPRTIIVTTRQQYGLPDDAIVYCNFN 292
Query: 61 QLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK 120
QLYKIDPSTLQMWVN+LK VPNS+LWLL+FPAVGEANIQA AQ +GL RI+FSNVA K
Sbjct: 293 QLYKIDPSTLQMWVNILKRVPNSVLWLLRFPAVGEANIQAYAQEMGLPPRRIVFSNVAPK 352
Query: 121 EEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPEL 180
EEHVRRGQLADVCLDTPLCNGHTT MDVLW GTP+VT+P ETLASRVAASQL TLGCPEL
Sbjct: 353 EEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPLETLASRVAASQLTTLGCPEL 412
Query: 181 IARTHKEYQDIAIRLGTDRD 200
IA+ +EY+DIA++LGTDR+
Sbjct: 413 IAKDRQEYEDIAVKLGTDRE 432
>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase,
SPINDLY family [Posttranslational modification, protein
turnover, chaperones].
Length = 620
Score = 154 bits (392), Expect = 3e-44
Identities = 69/159 (43%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 43 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGE--ANIQA 100
SR Q GLPEDA+V+C FN +KI P +W+ +L AVPNS+L L E A ++
Sbjct: 420 SRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRD 479
Query: 101 TAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 160
A+ G+D R+ F A E+H R +AD+ LDT GHTT+ D LW G PV+T G
Sbjct: 480 LAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRVG 539
Query: 161 ETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 199
E ASR AS G PEL+A + +Y + A+ G+DR
Sbjct: 540 EQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDR 578
>gnl|CDD|176112 cd08420, PBP2_CysL_like, C-terminal substrate binding domain of
LysR-type transcriptional regulator CysL, which
activates the transcription of the cysJI operon encoding
sulfite reductase, contains the type 2 periplasmic
binding fold. CysL, also known as YwfK, is a regular of
sulfur metabolism in Bacillus subtilis. Sulfur is
required for the synthesis of proteins and essential
cofactors in all living organism. Sulfur can be
assimilated either from inorganic sources (sulfate and
thiosulfate), or from organic sources (sulfate esters,
sulfamates, and sulfonates). CysL activates the
transcription of the cysJI operon encoding sulfite
reductase, which reduces sulfite to sulfide. Both cysL
mutant and cysJI mutant are unable to grow using sulfate
or sulfite as the sulfur source. Like other LysR-type
regulators, CysL also negatively regulates its own
transcription. In Escherichia coli, three LysR-type
activators are involved in the regulation of sulfur
metabolism: CysB, Cbl and MetR. The topology of this
substrate-binding domain is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 201
Score = 30.9 bits (71), Expect = 0.28
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 166 RVAASQLATLGC---PELIARTHKEYQDIAIRL 195
R+ AS T+G P L+AR K Y ++ + L
Sbjct: 3 RIGAST--TIGEYLLPRLLARFRKRYPEVRVSL 33
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzymes, Ornithine and Diaminopimelate
Decarboxylases, and Related Enzymes. This family
includes eukaryotic ornithine decarboxylase (ODC, EC
4.1.1.17), diaminopimelate decarboxylase (DapDC, EC
4.1.1.20), plant and prokaryotic biosynthetic arginine
decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine
decarboxylase (CANSDC), and ODC-like enzymes from
diverse bacterial species. These proteins are fold type
III PLP-dependent enzymes that catalyze essential steps
in the biosynthesis of polyamine and lysine. ODC and
ADC participate in alternative pathways of the
biosynthesis of putrescine, which is the precursor of
aliphatic polyamines in many organisms. ODC catalyzes
the direct synthesis of putrescine from L-ornithine,
while ADC converts L-arginine to agmatine, which is
hydrolysed to putrescine by agmatinase in a pathway that
exists only in plants and bacteria. DapDC converts
meso-2,6-diaminoheptanedioate to L-lysine, which is the
final step of lysine biosynthesis. CANSDC catalyzes the
decarboxylation of carboxynorspermidine, which is the
last step in the synthesis of norspermidine. The
PLP-dependent decarboxylases in this family contain an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. They exist as homodimers with active
sites that lie at the interface between the TIM barrel
domain of one subunit and the beta-sandwich domain of
the other subunit. Prokaryotic ornithine, lysine and
biodegradative arginine decarboxylases are fold type I
PLP-dependent enzymes and are not included in this
family.
Length = 368
Score = 30.7 bits (70), Expect = 0.51
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 58 NFNQLYKIDPSTLQMWVNVLKAVPNSIL------WLLKFPAV--GEANIQATAQALGLDQ 109
++ L + PS ++++ V KA PN + F GE + A A G+
Sbjct: 14 HYAALKEALPSGVKLFYAV-KANPNPHVLRTLAEAGTGFDVASKGELAL---ALAAGVPP 69
Query: 110 HRILFSNVAAKEEHVRRGQLADVCL 134
RI+F+ A + + V
Sbjct: 70 ERIIFTGPAKSVSEIEAALASGVDH 94
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 29.6 bits (67), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 159 PGETLASRVAASQLA--TLGCPELIARTHKEYQDIAIR 194
+ A VA QL+ + G P+LI RTH +Y ++R
Sbjct: 176 ATPSPADEVAFFQLSGGSTGTPKLIPRTHNDY-YYSVR 212
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 29.4 bits (66), Expect = 1.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 149 LWTGTPVVTLP-GETLASRVAASQLA--TLGCPELIARTHKEY 188
LW +P + T + VA QL+ + G P+LI RTH +Y
Sbjct: 165 LWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDY 207
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 29.3 bits (66), Expect = 1.5
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 18/106 (16%)
Query: 90 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD-----VCLDTPLCNGHTT 144
F + EA + A+ +R + AK +R +A L+ LC+
Sbjct: 120 FASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGL 179
Query: 145 SMDVLWTGTPVVTLPGETLASRVAASQLA--TLGCPELIARTHKEY 188
A VA QL+ T G P+LI RTH +Y
Sbjct: 180 F--TPAPPAD---------AGEVAFFQLSGGTTGTPKLIPRTHNDY 214
>gnl|CDD|222322 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.
Length = 134
Score = 28.1 bits (63), Expect = 1.9
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 83 SILWLLK--FPAVGEANIQATAQALG--LDQHRILFSNVA---AKEEHVRRGQLADVCLD 135
+LWLL+ P + +A +G ++ L NV E+ ADV L
Sbjct: 16 GLLWLLEEALPLLRKALPDVELHIIGSGPEELARLAPNVHFLGFVEDLAALLASADVALA 75
Query: 136 TPLCNGHTTSM---DVLWTGTPVVTLPGETLASRVAASQLA-TLGCPELIARTHKEYQDI 191
PL G + + + L G PVV + + A L LG L+A +E+ +
Sbjct: 76 -PLRFGAGSPLKLLEALAAGLPVVA-------TDIGAEGLPEDLGWGVLVADDPEEFAEA 127
Query: 192 AIRLGTD 198
+RL D
Sbjct: 128 IVRLLAD 134
>gnl|CDD|223098 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport
and metabolism].
Length = 394
Score = 28.0 bits (63), Expect = 3.3
Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 17/80 (21%)
Query: 58 NFNQLYKIDPSTLQMWVNVLKAV-PNSILWLLKFPA----------VGEANIQATAQALG 106
N +L P V AV NS +L+ A +GE A A G
Sbjct: 40 NARELKSAFP---GSGAKVFYAVKANSNPAILRLLAEEGSGFDVASLGEL---ELALAAG 93
Query: 107 LDQHRILFSNVAAKEEHVRR 126
RI+FS A EE +
Sbjct: 94 FPPERIVFSGPAKSEEEIAF 113
>gnl|CDD|237522 PRK13822, PRK13822, conjugal transfer coupling protein TraG;
Provisional.
Length = 641
Score = 28.0 bits (63), Expect = 3.7
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 21/86 (24%)
Query: 65 IDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRI------LFSNVA 118
+DP+ NVL W+ + E +I A A + D R F N A
Sbjct: 280 LDPTNPGTGFNVLD-------WIGRSGGTKEEDIVAVASWILSDSKRTESSRDDFFRNSA 332
Query: 119 AKEEHVRRGQLADVCLDTPLCNGHTT 144
+ LA VCL +G
Sbjct: 333 ---HQLLTALLAHVCL-----SGEYE 350
>gnl|CDD|182768 PRK10837, PRK10837, putative DNA-binding transcriptional regulator;
Provisional.
Length = 290
Score = 27.7 bits (62), Expect = 4.3
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 160 GETLASRVAASQLATLG---CPELIARTHKEYQDIAIRL 195
+ A R+ AS +T+G P +IAR ++Y + + L
Sbjct: 86 EDNGALRIYAS--STIGNYILPAMIARYRRDYPQLPLEL 122
>gnl|CDD|215965 pfam00516, GP120, Envelope glycoprotein GP120. The entry of HIV
requires interaction of viral GP120 with CD4 and a
chemokine receptor on the cell surface.
Length = 493
Score = 27.7 bits (62), Expect = 5.1
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 16 LQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFN 60
T TNT + T S I + ++ + C+FN
Sbjct: 94 TNGTATTTTTNTTSTTTIISETSYCIVDDNCTEMEKEEMKNCSFN 138
>gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA. This
bacterial (and Arabidopsis) protein, termed TypA or
BipA, a GTP-binding protein, is phosphorylated on a
tyrosine residue under some cellular conditions. Mutants
show altered regulation of some pathways, but the
precise function is unknown [Regulatory functions,
Other, Cellular processes, Adaptations to atypical
conditions, Protein synthesis, Translation factors].
Length = 594
Score = 27.3 bits (61), Expect = 7.0
Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 25 TNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKA 79
TN +++ +E ++ +T ++ L E A+ Y ++L ++ P ++++ VL
Sbjct: 539 TNVRSSGKDE---AVKLTPPRKLSL-EQALEYIEDDELVEVTPKSIRLRKRVLDP 589
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 27.1 bits (60), Expect = 8.0
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 146 MDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 199
MDV++ GT ET+AS + + + PE + R +E D+ +G +R
Sbjct: 310 MDVMFGGT-------ETVASAIEWAMAELMKSPEDLKRVQQELADV---VGLNR 353
>gnl|CDD|185087 PRK15133, PRK15133, microcin C ABC transporter permease YejB;
Provisional.
Length = 364
Score = 27.0 bits (60), Expect = 8.1
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 19 GLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVY 56
G A TK + +E+ + V+T+R + G+ E I++
Sbjct: 239 GFAALTMLTKNSFLDEIRKQYVVTARAK-GVSEKNILW 275
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 26.8 bits (60), Expect = 8.6
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 52 DAIVYCNFN---QLYKIDPSTLQMWVNVLKAVPNSILW 86
+ +VY +F +D LQM + K +P ++LW
Sbjct: 296 NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLW 333
>gnl|CDD|183688 PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 260
Score = 26.6 bits (59), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 143 TTSMDVLWTGTPVVTLPGETLASRVAASQLAT 174
TS+ + GT VT PG + A ++ QLAT
Sbjct: 146 ATSLTIGKDGTVSVTQPGSSNAVQIGQLQLAT 177
>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein. Royal jelly is the
food of queen bee larvae, and is responsible for the
high reproductive ability of the queen. Major royal
jelly proteins make up around 90% of larval jelly
proteins. This family also the sequence-related yellow
protein of drosophila which controls pigmentation of the
adult cuticle and larval mouth parts.
Length = 285
Score = 26.5 bits (59), Expect = 9.4
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 68 STLQMWVNVLKAVPNSILW-----LLKFPAVGEANIQATAQALGLDQHRILF 114
ST V + + N W F +G+ N Q+T AL +D + +LF
Sbjct: 152 STRLYSVP-TEVLRNETNWGNNAQYEDFKDLGDRNTQST--ALAVDPNGVLF 200
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.385
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,786,023
Number of extensions: 885104
Number of successful extensions: 801
Number of sequences better than 10.0: 1
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 25
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)