RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15362
(200 letters)
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 242 bits (617), Expect = 2e-76
Identities = 149/200 (74%), Positives = 172/200 (86%)
Query: 1 MIASGQVQTSVNGIVLQNGLATNQTNTKTATGEEVPQSIVITSRQQYGLPEDAIVYCNFN 60
MI GQ+Q ++NG + NGLAT Q N K ATGEEVP++I++T+R QYGLPEDAIVYCNFN
Sbjct: 471 MINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFN 530
Query: 61 QLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK 120
QLYKIDPSTLQMW N+LK VPNS+LWLL+FPAVGE NIQ AQ +GL Q+RI+FS VA K
Sbjct: 531 QLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPK 590
Query: 121 EEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPEL 180
EEHVRRGQLADVCLDTPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL LGC EL
Sbjct: 591 EEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLEL 650
Query: 181 IARTHKEYQDIAIRLGTDRD 200
IA+ +EY+DIA++LGTD +
Sbjct: 651 IAKNRQEYEDIAVKLGTDLE 670
Score = 55.6 bits (133), Expect = 2e-09
Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 14/139 (10%)
Query: 41 ITSRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQA 100
+ + + +Y N L ID L ++P+ + +K P G+ +
Sbjct: 397 LKKKAVIDFKSNGHIYDNRIVLNGID------LKAFLDSLPDVKIVKMKCPDGGDNADSS 450
Query: 101 TAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 160
+ A E + RGQ NG + S + T G
Sbjct: 451 NTALNMPVIPMNTIAE--AVIEMINRGQ------IQITINGFSISNGLATTQINNKAATG 502
Query: 161 ETLASRVAASQLATLGCPE 179
E + + + + G PE
Sbjct: 503 EEVPRTIIVTTRSQYGLPE 521
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 225 bits (575), Expect = 2e-71
Identities = 65/158 (41%), Positives = 92/158 (58%)
Query: 43 SRQQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATA 102
SR Q GLPE +V C FN YK++P ++ + VL+ VP+S+LWLL P +A ++A A
Sbjct: 367 SRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFA 426
Query: 103 QALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 162
A G+D R++F +++ R + AD+ LDT N HTT+ D LWTG PV+T PGET
Sbjct: 427 HAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGET 486
Query: 163 LASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 200
A+RVA S LG E+ + A+ L +D
Sbjct: 487 FAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPA 524
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 173 bits (440), Expect = 3e-51
Identities = 23/157 (14%), Positives = 52/157 (33%), Gaps = 6/157 (3%)
Query: 48 GLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKAVPNSILWLLKF---PAVGEANIQATAQA 104
+ + + K++P L+ + + + + ++ ++
Sbjct: 436 RENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKS 495
Query: 105 LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLA 164
D + +++R D+ ++ +D++ G V G +
Sbjct: 496 YLGD--SATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVH 553
Query: 165 SRVAASQLATLGCPE-LIARTHKEYQDIAIRLGTDRD 200
+ LG PE LIA T EY + A+RL +
Sbjct: 554 EHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQ 590
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 3e-05
Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 83/200 (41%)
Query: 10 SVNGI---VLQNGLATNQTNTKTATGEEV-------PQSIVITSRQQYGLPEDAIVYCNF 59
S++ + +Q+ + +TN+ G++V +++V++ G P+
Sbjct: 340 SISNLTQEQVQDYVN--KTNSHLPAGKQVEISLVNGAKNLVVS-----GPPQS------- 385
Query: 60 NQLYKIDPSTLQMWVNVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA 119
LY L + + KA GLDQ RI FS
Sbjct: 386 --LY-----GLNLTLRKAKAPS------------------------GLDQSRIPFS---- 410
Query: 120 KEEHVRRGQ-------------LADVCLDTPLCNGHTTSMDVLWTGT----PVV-TLPGE 161
E ++ L + L N +V + PV T G
Sbjct: 411 -ERKLKFSNRFLPVASPFHSHLLVPA---SDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 162 TLASRVAASQLATLGCPELI 181
L RV + ++ +I
Sbjct: 467 DL--RVLSGSISERIVDCII 484
Score = 29.2 bits (65), Expect = 1.0
Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 78/223 (34%)
Query: 10 SVNGIVLQNGLATNQTNTKTAT---GEEVPQSIVITSRQQYGLPEDAIVY-------CNF 59
S+ IV N T G E + I R+ Y A+++
Sbjct: 1660 SILDIV--------INNPVNLTIHFGGEKGKRI----RENY----SAMIFETIVDGKLKT 1703
Query: 60 NQLYK-IDPSTLQ-MWVN---VLK----------AVPNSILWLLK----FPA-------- 92
+++K I+ + + + +L + + LK PA
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 93 VGE--ANIQATAQALGL-DQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL 149
+GE A + + A + + ++F RG V + M +
Sbjct: 1764 LGEYAA-LASLADVMSIESLVEVVF----------YRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 150 WTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIA 192
G + E L V E + + +I
Sbjct: 1813 NPGRVAASFSQEALQYVV-----------ERVGKRTGWLVEIV 1844
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.36
Identities = 28/199 (14%), Positives = 53/199 (26%), Gaps = 50/199 (25%)
Query: 28 KTATGEEVPQSIVITSRQQYGL----------PEDAIVYCNFNQLYKIDP---------S 68
KT +V S + + + + PE + LY+IDP S
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSS 221
Query: 69 TLQMWVNVLKAVPNSILWLLKFPA-------VGEANIQATAQALGLDQHRILF----SNV 117
+++ ++ ++A +L + V A A L +IL V
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA---WNAFNL-SCKILLTTRFKQV 277
Query: 118 AAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVTLPGETLASRVAASQLATL 175
++ L +L + LP E
Sbjct: 278 TDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPRE-----------VLT 324
Query: 176 GCPELIARTHKEYQDIAIR 194
P ++ + +D
Sbjct: 325 TNPRRLSIIAESIRDGLAT 343
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2,
isoform CRA_B; HERG, PAS domain, voltage-gated
potassium channel, membrane; NMR {Homo sapiens} PDB:
2l1m_A 2l4r_A
Length = 138
Score = 28.8 bits (65), Expect = 0.75
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 33 EEVPQSIVITSRQQYGLPEDAIVYCN 58
E + +I + + ++YCN
Sbjct: 26 EGQSRKFIIANARVENCA---VIYCN 48
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.4 bits (64), Expect = 1.0
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 155 VVTLPGETLASRVAASQLATLGCPELIARTHKEYQ-DIAIRLGTDR 199
+V + AS + L L P + + Y + ++G DR
Sbjct: 75 IVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADR 120
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic
ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria
chlorella virus 1} PDB: 2nv9_A*
Length = 372
Score = 28.7 bits (65), Expect = 1.3
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 20/84 (23%)
Query: 62 LYKIDPSTL----QMWVNVLK------AV-PNSILWLLK--------FPAVGEANIQATA 102
Y P + W + AV N+ LLK F + I+
Sbjct: 19 FYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKK-V 77
Query: 103 QALGLDQHRILFSNVAAKEEHVRR 126
+G+ RI+F++ + +
Sbjct: 78 IQIGVSPSRIIFAHTMKTIDDLIF 101
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling
protein; HET: FMN; 2.63A {Pseudomonas putida}
Length = 162
Score = 28.0 bits (63), Expect = 1.5
Identities = 4/26 (15%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 33 EEVPQSIVITSRQQYGLPEDAIVYCN 58
+ IV+ ++ ++Y N
Sbjct: 32 DASNDGIVVAEKEGDDTI---LIYVN 54
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha
barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio
vulnificus} PDB: 2plk_A*
Length = 419
Score = 28.4 bits (64), Expect = 1.5
Identities = 2/27 (7%), Positives = 10/27 (37%)
Query: 100 ATAQALGLDQHRILFSNVAAKEEHVRR 126
+ G+ + ++ ++ +R
Sbjct: 113 ELVASEGVPADLTIHTHPIKRDADIRD 139
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP,
group IV decarboxylase, polyami parasitical,
chemotherapy target, putrescine; HET: PLP; 1.60A {Mus
musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Length = 424
Score = 28.4 bits (64), Expect = 1.7
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 100 ATAQALGLDQHRILFSNVAAKEEHVRR 126
Q LG+ R++++N + ++
Sbjct: 96 QLVQGLGVPAERVIYANPCKQVSQIKY 122
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY
beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei}
SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A*
1njj_A*
Length = 425
Score = 28.4 bits (64), Expect = 1.8
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 100 ATAQALGLDQHRILFSNVAAKEEHVRR 126
+ +G+ +I+++N + H+R
Sbjct: 96 QRVRGIGVPPEKIIYANPCKQISHIRY 122
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET:
PLP; 1.90A {Homo sapiens}
Length = 471
Score = 28.1 bits (63), Expect = 1.9
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 101 TAQALGLDQHRILFSNVAAKEEHVRR 126
Q+LG+ RI+++N + ++
Sbjct: 107 LVQSLGVPPERIIYANPCKQVSQIKY 132
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium
channel domain, membrane protein; 2.60A {Homo sapiens}
SCOP: d.110.3.6
Length = 110
Score = 27.1 bits (61), Expect = 2.1
Identities = 4/22 (18%), Positives = 10/22 (45%), Gaps = 3/22 (13%)
Query: 37 QSIVITSRQQYGLPEDAIVYCN 58
+ +I + + ++YCN
Sbjct: 2 RKFIIANARVENCA---VIYCN 20
>1xkw_A Fe(III)-pyochelin receptor; TONB dependent receptor, membrane
protein; HET: LDA 188; 2.00A {Pseudomonas aeruginosa}
Length = 665
Score = 28.0 bits (63), Expect = 2.4
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 5/27 (18%)
Query: 25 TNTKTATG-----EEVPQSIVITSRQQ 46
T E+PQS + ++
Sbjct: 9 PGVTTLGKVPLKPRELPQSASVIDHER 35
>3efm_A FAUA, ferric alcaligin siderophore receptor; membrane protein,
membrane receptor, membrane transporter, membrane, TONB
box; 2.33A {Bordetella pertussis}
Length = 707
Score = 27.7 bits (62), Expect = 2.7
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 25 TNTKTATG-EEVPQSIVITSRQQ 46
T T E PQS+ + +RQQ
Sbjct: 39 TATGLTLSPRETPQSVSVVTRQQ 61
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet
domain, structural genomics, israel structural
proteomics center, ISPC; 2.05A {Mus musculus}
Length = 448
Score = 27.7 bits (62), Expect = 2.8
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 100 ATAQALGLDQHRILFSNVAAKEEHVRRGQLADV 132
A Q LG+ I+F++ + ++ V
Sbjct: 96 ALVQELGVSPENIIFTSPCKQVSQIKYAAKVGV 128
>3t50_A Blue-light-activated histidine kinase; PAS superfamily,
blue-light photoreceptor, FMN binding, TRAN; HET: FMN;
1.64A {Brucella melitensis}
Length = 128
Score = 26.7 bits (60), Expect = 2.9
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 33 EEVPQSIVITSRQQYGLPEDAIVYCN 58
E ++IT+ P IV+ N
Sbjct: 4 EFTLMPMLITNPHLPDNP---IVFAN 26
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV,
PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN;
1.45A {Bacillus subtilis} PDB: 2pr6_A*
Length = 132
Score = 26.7 bits (60), Expect = 3.5
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 33 EEVPQSIVITSRQQYGLPEDAIVYCN 58
+ V +VIT P IVY N
Sbjct: 6 DHVRVGVVITDPALEDNP---IVYVN 28
>2w16_A FPVA, ferripyoverdine receptor; FPVA, iron, membrane, TONB BOX,
transport, siderop cell membrane; HET: N8E PVE FHO;
2.71A {Pseudomonas aeruginosa} PDB: 2o5p_A* 2iah_A*
2w6t_A* 2w6u_A* 2w75_A* 2w76_A* 2w77_A* 2w78_A* 1xkh_A*
Length = 772
Score = 27.3 bits (61), Expect = 4.0
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 25 TNTKTATG-EEVPQSIVITSRQQ 46
T T+ E PQSI + +RQ
Sbjct: 111 TATRLVLTPRETPQSITVVTRQN 133
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein,
structural genomics, PSI-biology, protei structure
initiative; 3.10A {Escherichia coli}
Length = 666
Score = 27.2 bits (60), Expect = 4.4
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 102 AQALGLDQHRILFSNVAAKEEHVRRGQLADVC 133
A ++ N E++R + +
Sbjct: 158 VLAHAGMTRSVIVCNGYKDREYIRLALIGEKM 189
>1qfg_A FHUA, protein (ferric hydroxamate uptake receptor);
TONB-dependent receptor, integral outer membrane
protein, ferrichrome-iron receptor; HET: PA1 GCN KDO
GMH GLC GLA FTT DAO MYR DDQ; 2.50A {Escherichia coli}
SCOP: f.4.3.3 PDB: 1qff_A* 1qjq_A* 1qkc_A* 2grx_A*
1fi1_A* 2fcp_A* 1by5_A* 1by3_A* 1fcp_A*
Length = 725
Score = 26.6 bits (59), Expect = 7.1
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 25 TNTKTATG-EEVPQSIVITSRQQ 46
T TKT T ++VPQSI + + ++
Sbjct: 35 TGTKTDTPIQKVPQSISVVTAEE 57
>3qlb_A FETA, enantio-pyochelin receptor; membrane protein, transport,
ferri-enantiopyochelin, outer M metal transport; HET:
CIT EFE; 3.26A {Pseudomonas fluorescens}
Length = 748
Score = 26.5 bits (59), Expect = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 25 TNTKTATG-EEVPQSIVITSRQQ 46
+ TKT E+PQSI + +R Q
Sbjct: 90 SGTKTDASLSEIPQSISVITRDQ 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.385
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,909,525
Number of extensions: 166610
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 30
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)