RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15362
         (200 letters)



>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean
          (Phaseolus vulgaris), phaseolin [TaxId: 3885]}
          Length = 162

 Score = 26.0 bits (57), Expect = 2.4
 Identities = 3/28 (10%), Positives = 13/28 (46%)

Query: 58 NFNQLYKIDPSTLQMWVNVLKAVPNSIL 85
           F  L +   ++L + ++ ++    ++ 
Sbjct: 6  EFGNLTERTDNSLNVLISSIEMEEGALF 33


>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
          Length = 170

 Score = 25.5 bits (55), Expect = 3.5
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 150 WTGTPVVTLPGETLASRVAASQLATLGCPELIART 184
              T ++ +PG T A R A      +  P+L ART
Sbjct: 126 ANKTLILAMPGSTKACRTA---WENIIAPQLDART 157


>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 213

 Score = 25.6 bits (56), Expect = 4.1
 Identities = 7/35 (20%), Positives = 19/35 (54%)

Query: 45  QQYGLPEDAIVYCNFNQLYKIDPSTLQMWVNVLKA 79
           ++ G+P++ +++ N    + +D + +  WV  L  
Sbjct: 86  RRLGIPKNKLLFANIEDFFAVDAAWIAAWVETLYP 120


>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
           [TaxId: 562]}
          Length = 221

 Score = 25.2 bits (54), Expect = 5.2
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 12/33 (36%)

Query: 147 DVLWTGTP------------VVTLPGETLASRV 167
           DV+ TGTP             VT  G +L +RV
Sbjct: 187 DVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRV 219


>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
           {Escherichia coli [TaxId: 562]}
          Length = 265

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 53  AIVYCNFNQLYKIDPSTLQ 71
            +   NF +L+ ID S LQ
Sbjct: 244 QVTTDNFARLFHIDASRLQ 262


>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
           (porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 320

 Score = 24.9 bits (54), Expect = 6.8
 Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 4/71 (5%)

Query: 80  VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC 139
           +   ++    F             A   ++   + +    ++         DVCL     
Sbjct: 63  LRCVLI----FGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTS 118

Query: 140 NGHTTSMDVLW 150
           +GH   +    
Sbjct: 119 HGHCGLLSENG 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 676,338
Number of extensions: 28243
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 7
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)