BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15363
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 206 bits (524), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 108/123 (87%)
Query: 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 65
+LK VPNS+LWLL+FPAVGE NIQ AQ +GL Q+RI+FS VA KEEHVRRGQLADVCLD
Sbjct: 546 ILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLD 605
Query: 66 TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 125
TPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL LGC ELIA+ +EY+DIA++L
Sbjct: 606 TPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKL 665
Query: 126 GTD 128
GTD
Sbjct: 666 GTD 668
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 72/123 (58%)
Query: 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 65
VL+ VP+S+LWLL P +A ++A A A G+D R++F +++ R + AD+ LD
Sbjct: 400 VLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLD 459
Query: 66 TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 125
T N HTT+ D LWTG PV+T PGET A+RVA S LG E+ + A+ L
Sbjct: 460 THPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVAL 519
Query: 126 GTD 128
+D
Sbjct: 520 ASD 522
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 72/123 (58%)
Query: 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 65
VL+ VP+S+LWLL P +A ++A A A G+D R++F +++ R + AD+ LD
Sbjct: 400 VLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLD 459
Query: 66 TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 125
T N HTT+ D LWTG PV+T PGET A+RVA S LG E+ + A+ L
Sbjct: 460 THPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVAL 519
Query: 126 GTD 128
+D
Sbjct: 520 ASD 522
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 35 LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP---LCNGHTTSMDVL-WTGTPVVTLP- 89
+G QH + +N H DV L + N T +L W TP T
Sbjct: 132 IGSRQHEVFSNNQFIDSLH-------DVNLSPEIILMLNHQATDFGLLDWIETPAETFVD 184
Query: 90 -GETLASRVAASQLA--TLGCPELIARTHKEYQDIAIR 124
T A VA QL+ + G P+LI RTH +Y D ++R
Sbjct: 185 FSSTPADEVAFFQLSGGSTGTPKLIPRTHNDY-DYSVR 221
>pdb|1K25|A Chain A, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|C Chain C, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|D Chain D, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
Length = 685
Score = 29.6 bits (65), Expect = 0.52, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 80 WTGTPVVTLPGETLASRVAASQLA 103
+TG P++T+PG+ +A + +Q+A
Sbjct: 466 YTGKPIITVPGQNVAVKSGTAQIA 489
>pdb|1PMD|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x)
Length = 675
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 81 TGTPVVTLPGETLASRVAASQLA 103
TG P VT+PG+ +A + +Q+A
Sbjct: 457 TGKPTVTVPGQNVALKSGTAQIA 479
>pdb|1PYY|A Chain A, Double Mutant Pbp2x T338aM339F FROM STREPTOCOCCUS
PNEUMONIAE STRAIN R6 At 2.4 A Resolution
Length = 702
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 81 TGTPVVTLPGETLASRVAASQLA 103
TG P VT+PG+ +A + +Q+A
Sbjct: 484 TGKPTVTVPGQNVALKSGTAQIA 506
>pdb|1QME|A Chain A, Penicillin-binding Protein 2x (pbp-2x)
pdb|1QMF|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) Acyl-Enzyme Complex
Length = 702
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 81 TGTPVVTLPGETLASRVAASQLA 103
TG P VT+PG+ +A + +Q+A
Sbjct: 484 TGKPTVTVPGQNVALKSGTAQIA 506
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 94 ASRVAASQLA--TLGCPELIARTHKEY 118
A VA QL+ T G P+LI RTH +Y
Sbjct: 183 ADEVAYFQLSGGTTGTPKLIPRTHNDY 209
>pdb|2Z2L|B Chain B, Penicillin-Binding Protein 2x (Pbp2x) From Streptococcus
Pneumoniae
pdb|2Z2L|E Chain E, Penicillin-Binding Protein 2x (Pbp2x) From Streptococcus
Pneumoniae
pdb|2Z2M|B Chain B, Cefditoren-Acylated Penicillin-Binding Protein 2x (Pbp2x)
From Streptococcus Pneumoniae
pdb|2Z2M|E Chain E, Cefditoren-Acylated Penicillin-Binding Protein 2x (Pbp2x)
From Streptococcus Pneumoniae
pdb|2ZC3|B Chain B, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Biapenem) From Streptococcus Pneumoniae
pdb|2ZC3|E Chain E, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Biapenem) From Streptococcus Pneumoniae
pdb|2ZC4|B Chain B, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Tebipenem) From Streptococcus Pneumoniae
pdb|2ZC4|E Chain E, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Tebipenem) From Streptococcus Pneumoniae
Length = 385
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 81 TGTPVVTLPGETLASRVAASQLA 103
TG P VT+PG+ +A + +Q+A
Sbjct: 292 TGKPTVTVPGQNVALKSGTAQIA 314
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 78 VLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127
V+ GT T G LAS VA L + PE++ + + RL T
Sbjct: 272 VMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNT 321
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 36 GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG 71
G+DQ +I ++ A+E R G + VCL TP+ G
Sbjct: 177 GIDQRKI---HMLARENLPRLGYSSPVCLHTPILVG 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,539,997
Number of Sequences: 62578
Number of extensions: 121131
Number of successful extensions: 238
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 15
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)