Query psy15363
Match_columns 130
No_of_seqs 134 out of 1023
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:58:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13844 Glyco_transf_41: Glyc 100.0 3.4E-36 7.3E-41 241.7 11.5 130 1-130 303-432 (468)
2 COG3914 Spy Predicted O-linked 100.0 4.1E-32 8.9E-37 219.3 11.6 127 2-129 449-578 (620)
3 KOG4626|consensus 99.9 3.4E-28 7.4E-33 198.3 8.8 130 1-130 777-906 (966)
4 PRK15427 colanic acid biosynth 99.8 1.7E-18 3.6E-23 137.9 12.1 121 2-130 243-373 (406)
5 cd05844 GT1_like_7 Glycosyltra 99.7 2.3E-17 5.1E-22 127.1 11.7 121 2-130 209-338 (367)
6 cd03796 GT1_PIG-A_like This fa 99.7 2.9E-17 6.2E-22 129.7 12.0 120 2-129 214-334 (398)
7 cd03806 GT1_ALG11_like This fa 99.7 3.7E-17 7.9E-22 130.7 11.9 123 2-129 258-393 (419)
8 cd03818 GT1_ExpC_like This fam 99.7 3.3E-17 7.2E-22 129.1 11.3 123 2-130 233-368 (396)
9 cd03812 GT1_CapH_like This fam 99.7 1.1E-16 2.3E-21 122.7 10.7 119 2-130 213-333 (358)
10 cd03805 GT1_ALG2_like This fam 99.7 2E-16 4.3E-21 123.4 12.1 121 2-130 232-366 (392)
11 PLN02846 digalactosyldiacylgly 99.7 8.9E-17 1.9E-21 130.1 10.4 114 2-128 249-363 (462)
12 TIGR03449 mycothiol_MshA UDP-N 99.7 2.1E-16 4.6E-21 124.3 12.0 121 2-129 240-369 (405)
13 cd03816 GT1_ALG1_like This fam 99.7 2.5E-16 5.4E-21 125.6 12.3 111 10-128 267-381 (415)
14 PRK15484 lipopolysaccharide 1, 99.7 3.4E-16 7.4E-21 123.5 12.0 119 2-130 214-346 (380)
15 PRK09922 UDP-D-galactose:(gluc 99.7 7.7E-16 1.7E-20 120.1 13.5 112 11-130 209-326 (359)
16 PLN02949 transferase, transfer 99.7 3.2E-16 6.9E-21 127.1 10.9 122 2-128 289-422 (463)
17 cd03821 GT1_Bme6_like This fam 99.7 7E-16 1.5E-20 116.7 11.7 121 2-129 224-346 (375)
18 PLN02275 transferase, transfer 99.7 7.8E-16 1.7E-20 121.0 12.3 109 9-126 258-371 (371)
19 TIGR02918 accessory Sec system 99.7 4.8E-16 1E-20 127.1 11.0 116 2-128 340-467 (500)
20 cd03817 GT1_UGDG_like This fam 99.7 7.4E-16 1.6E-20 116.7 11.2 121 2-130 223-345 (374)
21 cd03792 GT1_Trehalose_phosphor 99.7 1E-15 2.3E-20 119.5 12.1 121 2-129 211-338 (372)
22 PLN02871 UDP-sulfoquinovose:DA 99.7 6.9E-16 1.5E-20 124.5 11.0 117 3-130 281-402 (465)
23 PLN02501 digalactosyldiacylgly 99.7 7.4E-16 1.6E-20 128.9 10.7 115 2-129 567-682 (794)
24 TIGR03088 stp2 sugar transfera 99.7 8E-16 1.7E-20 119.7 10.3 118 2-129 215-339 (374)
25 KOG1111|consensus 99.7 4.1E-16 9E-21 121.3 8.5 86 2-89 216-302 (426)
26 PRK15490 Vi polysaccharide bio 99.6 1.2E-15 2.7E-20 125.3 11.0 102 2-113 419-521 (578)
27 cd04949 GT1_gtfA_like This fam 99.6 1.2E-15 2.7E-20 118.4 10.4 119 2-129 225-346 (372)
28 cd03799 GT1_amsK_like This is 99.6 2.9E-15 6.4E-20 114.2 11.8 121 2-130 200-329 (355)
29 PRK15179 Vi polysaccharide bio 99.6 1.5E-15 3.3E-20 128.1 11.0 116 2-127 538-658 (694)
30 cd03795 GT1_like_4 This family 99.6 9.2E-15 2E-19 111.6 13.0 120 4-130 210-334 (357)
31 cd03820 GT1_amsD_like This fam 99.6 4.4E-15 9.5E-20 111.1 11.0 120 2-130 199-321 (348)
32 cd03800 GT1_Sucrose_synthase T 99.6 6.3E-15 1.4E-19 114.3 12.1 121 2-129 241-369 (398)
33 cd04946 GT1_AmsK_like This fam 99.6 5.2E-15 1.1E-19 117.7 11.9 121 2-130 251-379 (407)
34 TIGR03087 stp1 sugar transfera 99.6 2.1E-15 4.6E-20 119.0 9.3 114 2-130 249-364 (397)
35 cd04962 GT1_like_5 This family 99.6 6E-15 1.3E-19 113.8 11.4 117 2-129 218-337 (371)
36 cd03804 GT1_wbaZ_like This fam 99.6 5.4E-15 1.2E-19 114.2 11.1 111 5-129 215-327 (351)
37 cd03813 GT1_like_3 This family 99.6 2.4E-15 5.2E-20 121.8 9.5 120 2-130 314-444 (475)
38 cd03801 GT1_YqgM_like This fam 99.6 7.7E-15 1.7E-19 109.9 10.7 121 2-130 220-343 (374)
39 PF00534 Glycos_transf_1: Glyc 99.6 3.6E-15 7.7E-20 104.6 7.8 119 3-129 37-159 (172)
40 cd03822 GT1_ecORF704_like This 99.6 1.3E-14 2.8E-19 110.4 11.4 120 2-129 206-335 (366)
41 PRK10307 putative glycosyl tra 99.6 1.1E-14 2.3E-19 115.3 11.1 113 8-129 255-374 (412)
42 cd03802 GT1_AviGT4_like This f 99.6 3.5E-14 7.6E-19 107.9 12.0 110 10-127 195-307 (335)
43 cd03798 GT1_wlbH_like This fam 99.6 4.9E-14 1.1E-18 106.0 12.1 121 2-130 223-346 (377)
44 cd03814 GT1_like_2 This family 99.6 3.2E-14 7E-19 107.9 10.7 114 2-130 218-334 (364)
45 TIGR02472 sucr_P_syn_N sucrose 99.6 2.5E-14 5.5E-19 114.7 10.3 95 28-129 306-407 (439)
46 cd04951 GT1_WbdM_like This fam 99.6 5.7E-14 1.2E-18 107.3 11.7 115 2-128 209-326 (360)
47 cd03809 GT1_mtfB_like This fam 99.6 1.4E-14 3.1E-19 110.1 8.0 120 2-130 216-338 (365)
48 cd03819 GT1_WavL_like This fam 99.5 1.1E-13 2.5E-18 105.8 11.7 116 2-126 206-328 (355)
49 PRK05749 3-deoxy-D-manno-octul 99.5 1.3E-13 2.8E-18 109.8 11.4 124 2-130 252-390 (425)
50 cd03808 GT1_cap1E_like This fa 99.5 1E-13 2.2E-18 104.1 10.3 119 2-130 209-331 (359)
51 TIGR02468 sucrsPsyn_pln sucros 99.5 9.1E-14 2E-18 120.7 11.1 98 26-130 535-639 (1050)
52 cd03823 GT1_ExpE7_like This fa 99.5 1.8E-13 3.9E-18 103.5 11.5 109 11-130 219-331 (359)
53 cd03811 GT1_WabH_like This fam 99.5 1.7E-13 3.7E-18 102.5 11.2 118 2-129 210-333 (353)
54 cd03807 GT1_WbnK_like This fam 99.5 1.8E-13 3.8E-18 103.2 11.4 116 2-129 214-333 (365)
55 cd04955 GT1_like_6 This family 99.5 1E-13 2.2E-18 106.2 9.7 108 12-129 221-331 (363)
56 cd03794 GT1_wbuB_like This fam 99.5 2.2E-13 4.8E-18 103.2 11.4 118 3-130 242-367 (394)
57 PF13692 Glyco_trans_1_4: Glyc 99.5 1.7E-14 3.8E-19 97.5 3.9 110 2-128 24-135 (135)
58 TIGR02470 sucr_synth sucrose s 99.5 2.9E-13 6.3E-18 115.2 11.3 117 3-126 572-707 (784)
59 PLN00142 sucrose synthase 99.5 4.6E-13 1E-17 114.2 12.5 117 2-125 594-729 (815)
60 cd03825 GT1_wcfI_like This fam 99.5 3.9E-13 8.5E-18 102.9 9.6 113 3-130 215-332 (365)
61 PHA01633 putative glycosyl tra 99.5 4.9E-13 1.1E-17 104.6 10.2 80 2-91 169-256 (335)
62 PHA01630 putative group 1 glyc 99.5 6.2E-13 1.3E-17 103.8 10.6 117 2-129 163-295 (331)
63 PLN02939 transferase, transfer 99.4 2.1E-12 4.6E-17 111.3 12.1 120 3-126 801-929 (977)
64 TIGR02149 glgA_Coryne glycogen 99.4 3.5E-12 7.6E-17 99.3 12.0 113 11-129 228-353 (388)
65 PRK14098 glycogen synthase; Pr 99.4 4.4E-12 9.5E-17 103.6 11.6 114 3-124 329-447 (489)
66 cd01635 Glycosyltransferase_GT 99.4 4E-12 8.6E-17 90.7 9.4 88 2-91 125-214 (229)
67 cd04950 GT1_like_1 Glycosyltra 99.4 5E-12 1.1E-16 99.4 10.7 111 3-127 223-339 (373)
68 PRK13609 diacylglycerol glucos 99.4 8.4E-12 1.8E-16 97.9 11.3 115 7-130 225-340 (380)
69 PRK00654 glgA glycogen synthas 99.3 1.3E-11 2.7E-16 100.0 11.8 121 2-127 303-427 (466)
70 TIGR02095 glgA glycogen/starch 99.3 1.1E-11 2.3E-16 100.3 11.1 121 2-127 312-436 (473)
71 PLN02316 synthase/transferase 99.3 2E-11 4.3E-16 106.4 12.1 123 2-127 861-997 (1036)
72 cd03788 GT1_TPS Trehalose-6-Ph 99.3 6.7E-12 1.5E-16 101.7 8.5 119 2-129 285-428 (460)
73 TIGR02400 trehalose_OtsA alpha 99.3 3.5E-11 7.6E-16 97.6 10.4 120 1-129 279-423 (456)
74 TIGR00236 wecB UDP-N-acetylglu 99.3 8.3E-11 1.8E-15 92.0 12.1 116 2-129 220-335 (365)
75 cd03791 GT1_Glycogen_synthase_ 99.3 7.8E-11 1.7E-15 94.9 11.4 114 3-127 318-441 (476)
76 PRK13608 diacylglycerol glucos 99.3 9.5E-11 2.1E-15 93.0 11.7 115 7-130 226-340 (391)
77 PRK14099 glycogen synthase; Pr 99.2 1E-10 2.2E-15 95.5 11.0 120 3-129 317-448 (485)
78 PLN02605 monogalactosyldiacylg 99.2 1.2E-10 2.7E-15 91.8 11.2 108 10-128 239-347 (382)
79 PRK00025 lpxB lipid-A-disaccha 99.2 9.3E-11 2E-15 91.7 10.0 117 3-130 211-343 (380)
80 cd03785 GT1_MurG MurG is an N- 99.2 2E-10 4.3E-15 88.5 10.7 109 11-129 210-325 (350)
81 PRK10125 putative glycosyl tra 99.2 7.6E-11 1.6E-15 94.2 8.5 68 11-91 270-339 (405)
82 COG0438 RfaG Glycosyltransfera 99.1 1.2E-09 2.7E-14 80.4 11.2 117 5-129 223-343 (381)
83 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 1.1E-09 2.3E-14 85.0 11.0 109 12-130 231-339 (363)
84 TIGR01133 murG undecaprenyldip 99.1 1.2E-09 2.7E-14 84.1 9.6 110 12-130 209-323 (348)
85 PRK00726 murG undecaprenyldiph 99.0 2.5E-09 5.4E-14 83.1 10.6 107 13-130 214-326 (357)
86 TIGR00215 lpxB lipid-A-disacch 99.0 6.4E-09 1.4E-13 82.6 12.0 117 4-129 217-348 (385)
87 PLN03063 alpha,alpha-trehalose 99.0 1.4E-09 3E-14 93.6 8.1 117 2-127 300-442 (797)
88 TIGR03713 acc_sec_asp1 accesso 99.0 2.2E-09 4.8E-14 88.5 8.9 118 2-129 341-489 (519)
89 KOG0853|consensus 98.9 8E-09 1.7E-13 84.1 9.5 114 11-130 308-435 (495)
90 PRK14501 putative bifunctional 98.9 1.7E-09 3.8E-14 92.1 5.7 118 2-129 286-429 (726)
91 TIGR02919 accessory Sec system 98.9 2E-08 4.4E-13 81.3 10.1 115 2-129 296-412 (438)
92 PRK09814 beta-1,6-galactofuran 98.8 2.9E-08 6.2E-13 77.2 9.7 99 9-125 187-297 (333)
93 TIGR02398 gluc_glyc_Psyn gluco 98.6 4.5E-07 9.8E-12 74.3 11.3 88 1-89 305-416 (487)
94 KOG1387|consensus 98.6 3.3E-07 7.1E-12 72.0 9.5 114 10-127 303-423 (465)
95 TIGR03492 conserved hypothetic 98.3 9.5E-06 2.1E-10 64.9 11.2 111 11-129 237-365 (396)
96 cd03793 GT1_Glycogen_synthase_ 98.3 1.5E-06 3.3E-11 72.3 6.3 68 26-93 429-509 (590)
97 PF13524 Glyco_trans_1_2: Glyc 98.2 2.3E-06 5E-11 54.4 3.7 63 62-130 1-64 (92)
98 cd03784 GT1_Gtf_like This fami 98.1 4.4E-05 9.5E-10 60.2 10.6 82 40-128 288-372 (401)
99 TIGR03590 PseG pseudaminic aci 98.1 1.9E-05 4.2E-10 60.3 7.9 64 16-89 204-267 (279)
100 TIGR01426 MGT glycosyltransfer 98.1 6.1E-05 1.3E-09 59.5 10.9 83 40-129 275-360 (392)
101 PLN03064 alpha,alpha-trehalose 98.1 3.1E-05 6.7E-10 67.8 9.6 86 2-87 384-493 (934)
102 COG0707 MurG UDP-N-acetylgluco 98.0 7.4E-05 1.6E-09 59.2 10.6 97 25-130 224-326 (357)
103 COG1519 KdtA 3-deoxy-D-manno-o 98.0 0.00028 6.2E-09 56.7 12.6 121 2-128 250-385 (419)
104 KOG2941|consensus 97.9 9.4E-05 2E-09 58.4 9.1 109 10-127 291-404 (444)
105 TIGR00661 MJ1255 conserved hyp 97.9 0.00011 2.3E-09 56.9 8.6 86 40-129 229-315 (321)
106 PF13528 Glyco_trans_1_3: Glyc 97.8 0.00045 9.8E-09 52.7 11.3 78 41-122 233-314 (318)
107 PF02684 LpxB: Lipid-A-disacch 97.8 0.00018 3.8E-09 57.5 8.8 117 4-129 210-341 (373)
108 PF02350 Epimerase_2: UDP-N-ac 97.8 0.00019 4.1E-09 56.5 8.8 107 4-127 207-317 (346)
109 TIGR03568 NeuC_NnaA UDP-N-acet 97.7 0.00072 1.6E-08 53.5 11.4 74 40-125 262-336 (365)
110 COG0297 GlgA Glycogen synthase 97.5 0.00092 2E-08 55.1 9.9 82 5-91 318-401 (487)
111 PRK12446 undecaprenyldiphospho 97.5 0.0016 3.4E-08 51.4 10.3 76 51-129 244-326 (352)
112 PF04101 Glyco_tran_28_C: Glyc 97.4 0.00029 6.2E-09 49.4 4.4 84 40-128 55-144 (167)
113 PHA03392 egt ecdysteroid UDP-g 97.3 0.0036 7.8E-08 51.8 10.7 85 40-129 346-433 (507)
114 COG1819 Glycosyl transferases, 97.3 0.0016 3.4E-08 52.5 8.3 82 40-128 284-368 (406)
115 PF00201 UDPGT: UDP-glucoronos 97.2 0.0011 2.4E-08 53.9 6.7 83 40-129 323-410 (500)
116 PLN02167 UDP-glycosyltransfera 97.0 0.0097 2.1E-07 48.9 10.1 47 40-90 340-386 (475)
117 PLN03004 UDP-glycosyltransfera 97.0 0.011 2.4E-07 48.3 10.3 45 40-90 334-380 (451)
118 COG0763 LpxB Lipid A disacchar 97.0 0.004 8.6E-08 49.7 7.3 100 4-113 214-317 (381)
119 PLN02562 UDP-glycosyltransfera 96.9 0.013 2.9E-07 47.8 10.5 47 40-90 328-374 (448)
120 PF05159 Capsule_synth: Capsul 96.9 0.0038 8.1E-08 47.2 6.5 80 3-90 146-226 (269)
121 PRK10422 lipopolysaccharide co 96.9 0.0068 1.5E-07 47.5 8.1 89 3-96 204-295 (352)
122 COG0381 WecB UDP-N-acetylgluco 96.8 0.023 5.1E-07 45.5 10.2 114 2-129 227-342 (383)
123 cd03789 GT1_LPS_heptosyltransf 96.7 0.015 3.2E-07 43.9 8.5 89 3-97 142-232 (279)
124 PLN02173 UDP-glucosyl transfer 96.6 0.013 2.9E-07 47.8 8.4 85 40-129 317-409 (449)
125 PRK01021 lpxB lipid-A-disaccha 96.6 0.042 9E-07 46.5 11.1 70 55-129 484-572 (608)
126 PRK10916 ADP-heptose:LPS hepto 96.6 0.017 3.8E-07 45.1 8.3 85 3-92 202-290 (348)
127 PLN02863 UDP-glucoronosyl/UDP- 96.5 0.033 7.1E-07 45.9 10.1 47 40-90 343-389 (477)
128 PRK10017 colanic acid biosynth 96.5 0.083 1.8E-06 43.0 12.1 94 27-129 295-393 (426)
129 TIGR02195 heptsyl_trn_II lipop 96.5 0.023 5E-07 44.0 8.6 87 3-96 196-284 (334)
130 TIGR02201 heptsyl_trn_III lipo 96.5 0.022 4.8E-07 44.3 8.4 86 3-93 202-290 (344)
131 PLN02410 UDP-glucoronosyl/UDP- 96.4 0.022 4.7E-07 46.6 8.4 47 40-90 324-370 (451)
132 PLN02448 UDP-glycosyltransfera 96.4 0.024 5.1E-07 46.3 8.5 44 41-90 324-369 (459)
133 PLN02992 coniferyl-alcohol glu 96.3 0.1 2.2E-06 43.2 11.8 83 40-129 338-428 (481)
134 PLN02210 UDP-glucosyl transfer 96.3 0.071 1.5E-06 43.6 10.8 45 40-90 324-370 (456)
135 PLN02555 limonoid glucosyltran 96.3 0.03 6.5E-07 46.2 8.5 47 40-90 337-383 (480)
136 COG3980 spsG Spore coat polysa 96.3 0.092 2E-06 40.7 10.4 64 17-90 191-256 (318)
137 TIGR02193 heptsyl_trn_I lipopo 96.3 0.034 7.5E-07 42.7 8.3 88 2-97 199-288 (319)
138 PF01075 Glyco_transf_9: Glyco 96.2 0.018 4E-07 42.4 6.4 90 3-98 126-218 (247)
139 PRK14089 ipid-A-disaccharide s 96.2 0.012 2.7E-07 46.5 5.7 53 55-111 231-286 (347)
140 PLN03007 UDP-glucosyltransfera 96.2 0.086 1.9E-06 43.4 10.8 44 40-89 345-390 (482)
141 PLN02670 transferase, transfer 96.2 0.11 2.5E-06 42.7 11.4 82 42-128 341-429 (472)
142 PLN02554 UDP-glycosyltransfera 96.1 0.018 3.9E-07 47.4 6.5 47 40-90 342-388 (481)
143 PLN02208 glycosyltransferase f 96.1 0.047 1E-06 44.6 8.5 82 41-129 312-402 (442)
144 PLN02152 indole-3-acetate beta 96.1 0.13 2.9E-06 42.1 11.1 78 4-90 283-373 (455)
145 PRK10964 ADP-heptose:LPS hepto 96.0 0.033 7.2E-07 43.0 7.2 87 3-97 199-287 (322)
146 PLN02207 UDP-glycosyltransfera 96.0 0.036 7.7E-07 45.6 7.5 46 40-89 332-377 (468)
147 TIGR02094 more_P_ylases alpha- 96.0 0.08 1.7E-06 44.9 9.6 77 12-89 424-510 (601)
148 PLN00414 glycosyltransferase f 95.9 0.056 1.2E-06 44.2 8.1 81 43-128 315-402 (446)
149 PLN00164 glucosyltransferase; 95.8 0.19 4.2E-06 41.4 11.2 78 42-128 341-431 (480)
150 cd04299 GT1_Glycogen_Phosphory 95.8 0.052 1.1E-06 47.3 7.9 78 12-90 513-600 (778)
151 PF10087 DUF2325: Uncharacteri 95.7 0.11 2.5E-06 33.3 7.6 77 15-93 2-86 (97)
152 PLN02764 glycosyltransferase f 95.6 0.079 1.7E-06 43.5 8.2 82 42-128 319-407 (453)
153 PF07429 Glyco_transf_56: 4-al 95.4 0.57 1.2E-05 37.3 11.8 82 25-112 231-314 (360)
154 PF06258 Mito_fiss_Elm1: Mitoc 95.3 0.29 6.3E-06 38.2 10.0 56 40-97 209-264 (311)
155 PLN02534 UDP-glycosyltransfera 94.8 0.092 2E-06 43.5 6.1 45 40-90 344-390 (491)
156 PRK02797 4-alpha-L-fucosyltran 94.6 0.2 4.3E-06 39.3 7.3 82 24-111 191-274 (322)
157 PF05693 Glycogen_syn: Glycoge 94.4 0.047 1E-06 46.2 3.7 66 26-91 424-502 (633)
158 TIGR03609 S_layer_CsaB polysac 94.1 0.73 1.6E-05 35.1 9.6 57 46-110 237-293 (298)
159 COG0859 RfaF ADP-heptose:LPS h 93.7 0.68 1.5E-05 36.2 8.8 72 13-92 209-280 (334)
160 PLN03015 UDP-glucosyl transfer 93.2 0.52 1.1E-05 38.9 7.6 45 42-90 337-381 (470)
161 PF06189 5-nucleotidase: 5'-nu 93.1 0.7 1.5E-05 35.4 7.6 73 11-88 35-108 (264)
162 TIGR01012 Sa_S2_E_A ribosomal 92.6 0.59 1.3E-05 34.3 6.5 76 12-88 61-137 (196)
163 PF00982 Glyco_transf_20: Glyc 92.6 0.19 4.1E-06 41.5 4.4 83 2-84 297-398 (474)
164 COG2327 WcaK Polysaccharide py 92.6 2.8 6.1E-05 33.9 10.7 66 39-112 265-330 (385)
165 PRK10494 hypothetical protein; 92.5 0.84 1.8E-05 34.7 7.5 89 5-93 114-212 (259)
166 PF01113 DapB_N: Dihydrodipico 91.7 0.21 4.6E-06 33.5 3.0 39 51-89 59-98 (124)
167 KOG1192|consensus 91.5 0.32 7E-06 39.4 4.4 50 41-93 336-387 (496)
168 PTZ00254 40S ribosomal protein 91.1 0.67 1.4E-05 35.2 5.5 77 10-88 70-147 (249)
169 PRK04020 rps2P 30S ribosomal p 91.0 1.2 2.5E-05 32.9 6.6 77 11-88 66-143 (204)
170 PF15024 Glyco_transf_18: Glyc 90.9 0.59 1.3E-05 39.3 5.4 88 40-128 322-430 (559)
171 PRK10117 trehalose-6-phosphate 90.8 1.4 3E-05 36.6 7.4 83 2-84 276-377 (474)
172 PLN02205 alpha,alpha-trehalose 90.8 1.5 3.2E-05 38.9 8.1 82 2-83 360-460 (854)
173 cd05565 PTS_IIB_lactose PTS_II 90.6 1.7 3.7E-05 28.3 6.4 63 25-91 17-81 (99)
174 COG0673 MviM Predicted dehydro 90.6 2.4 5.3E-05 32.5 8.4 79 3-90 19-99 (342)
175 PF10093 DUF2331: Uncharacteri 90.5 1.5 3.2E-05 35.3 7.1 81 3-88 200-288 (374)
176 COG2099 CobK Precorrin-6x redu 90.4 2.8 6.2E-05 32.0 8.3 76 40-125 45-127 (257)
177 PLN02819 lysine-ketoglutarate 90.4 6.3 0.00014 35.8 11.7 84 3-91 584-681 (1042)
178 TIGR01761 thiaz-red thiazoliny 90.1 2.5 5.4E-05 33.5 8.1 89 2-104 16-110 (343)
179 PF11071 DUF2872: Protein of u 90.0 1.2 2.6E-05 30.7 5.4 92 24-123 10-137 (141)
180 COG3563 KpsC Capsule polysacch 89.6 0.89 1.9E-05 37.9 5.4 80 2-90 171-252 (671)
181 PF04007 DUF354: Protein of un 89.6 1.7 3.6E-05 34.4 6.8 61 56-124 245-306 (335)
182 COG0380 OtsA Trehalose-6-phosp 89.5 4 8.8E-05 34.0 9.1 82 2-83 303-403 (486)
183 TIGR00715 precor6x_red precorr 89.4 6.6 0.00014 29.8 9.7 87 27-126 163-255 (256)
184 TIGR00725 conserved hypothetic 89.1 4.3 9.3E-05 28.5 8.0 66 55-122 87-158 (159)
185 COG4671 Predicted glycosyl tra 88.9 11 0.00024 30.4 11.0 58 70-127 302-364 (400)
186 COG4394 Uncharacterized protei 88.4 2.7 5.8E-05 33.0 6.9 44 41-88 239-282 (370)
187 PF04230 PS_pyruv_trans: Polys 88.3 4.3 9.3E-05 29.3 7.9 47 40-90 238-284 (286)
188 PF03016 Exostosin: Exostosin 88.1 0.75 1.6E-05 34.7 3.9 40 50-89 227-268 (302)
189 PF01408 GFO_IDH_MocA: Oxidore 88.0 4.9 0.00011 25.9 7.3 76 4-89 17-93 (120)
190 cd03129 GAT1_Peptidase_E_like 87.8 6.7 0.00014 28.4 8.6 87 3-89 18-121 (210)
191 PF09949 DUF2183: Uncharacteri 87.8 2 4.2E-05 28.1 5.1 38 3-43 55-93 (100)
192 PF04464 Glyphos_transf: CDP-G 87.3 1 2.2E-05 35.3 4.3 105 8-126 225-334 (369)
193 COG0062 Uncharacterized conser 86.8 11 0.00023 27.9 9.9 87 2-89 36-158 (203)
194 cd05564 PTS_IIB_chitobiose_lic 86.5 5.8 0.00013 25.4 6.8 66 25-94 16-83 (96)
195 TIGR03837 efp_adjacent_2 conse 86.2 4.4 9.5E-05 32.6 7.2 81 3-88 198-286 (371)
196 KOG0832|consensus 85.9 5.7 0.00012 30.0 7.3 28 61-88 175-202 (251)
197 COG1817 Uncharacterized protei 85.9 7.7 0.00017 30.7 8.3 56 70-129 259-315 (346)
198 PF03435 Saccharop_dh: Sacchar 85.7 4 8.7E-05 32.3 6.9 81 4-89 14-98 (386)
199 TIGR00036 dapB dihydrodipicoli 84.8 3.5 7.5E-05 31.3 6.0 55 58-114 67-126 (266)
200 TIGR03646 YtoQ_fam YtoQ family 84.4 3.6 7.9E-05 28.4 5.2 67 24-93 13-114 (144)
201 COG1152 CdhA CO dehydrogenase/ 84.2 5.6 0.00012 34.0 7.2 97 14-122 238-353 (772)
202 PRK05447 1-deoxy-D-xylulose 5- 84.2 9.2 0.0002 30.9 8.3 86 5-93 19-126 (385)
203 COG0058 GlgP Glucan phosphoryl 84.1 11 0.00023 33.2 9.1 85 8-93 519-614 (750)
204 cd01425 RPS2 Ribosomal protein 84.0 8.5 0.00018 27.8 7.4 79 12-90 56-158 (193)
205 COG1135 AbcC ABC-type metal io 83.0 20 0.00042 28.5 9.4 119 11-130 31-161 (339)
206 KOG1387|consensus 82.9 7.5 0.00016 31.4 7.1 87 2-89 63-179 (465)
207 TIGR02717 AcCoA-syn-alpha acet 82.7 25 0.00054 28.8 10.9 111 15-127 153-289 (447)
208 PRK06270 homoserine dehydrogen 82.2 19 0.0004 28.4 9.3 65 25-90 56-126 (341)
209 TIGR00853 pts-lac PTS system, 82.2 5.7 0.00012 25.5 5.3 74 14-91 5-84 (95)
210 TIGR02093 P_ylase glycogen/sta 82.1 6.6 0.00014 34.6 7.1 53 41-93 607-663 (794)
211 KOG3349|consensus 82.0 6.2 0.00014 28.0 5.7 48 55-105 76-123 (170)
212 PRK14046 malate--CoA ligase su 81.9 25 0.00055 28.3 12.8 97 30-127 274-386 (392)
213 TIGR01361 DAHP_synth_Bsub phos 81.8 17 0.00037 27.6 8.7 80 26-109 79-162 (260)
214 PRK04207 glyceraldehyde-3-phos 81.2 20 0.00043 28.3 9.1 82 3-91 16-111 (341)
215 PF00343 Phosphorylase: Carboh 81.0 22 0.00049 31.1 9.9 51 41-91 524-578 (713)
216 PRK13397 3-deoxy-7-phosphohept 80.9 19 0.00041 27.4 8.5 81 25-109 68-152 (250)
217 TIGR03759 conj_TIGR03759 integ 79.8 2.5 5.4E-05 31.1 3.3 37 5-42 129-165 (200)
218 PF01555 N6_N4_Mtase: DNA meth 79.5 3.9 8.4E-05 29.1 4.3 31 58-89 190-220 (231)
219 TIGR02802 Pal_lipo peptidoglyc 79.1 5.4 0.00012 25.5 4.5 46 3-48 22-80 (104)
220 PRK06091 membrane protein FdrA 77.7 25 0.00055 29.8 9.0 107 14-128 195-318 (555)
221 TIGR03682 arCOG04112 arCOG0411 77.3 6.7 0.00015 30.6 5.3 71 12-88 213-289 (308)
222 COG3660 Predicted nucleoside-d 76.3 26 0.00057 27.3 8.0 39 53-93 238-276 (329)
223 TIGR03845 sulfopyru_alph sulfo 76.3 8.8 0.00019 26.9 5.2 47 72-118 73-131 (157)
224 PF02602 HEM4: Uroporphyrinoge 76.2 14 0.0003 26.7 6.5 106 6-119 111-230 (231)
225 PRK05395 3-dehydroquinate dehy 75.9 13 0.00028 26.1 5.8 60 26-88 33-99 (146)
226 PRK10834 vancomycin high tempe 75.5 11 0.00025 28.4 5.9 85 5-89 75-168 (239)
227 PF11238 DUF3039: Protein of u 75.3 2.4 5.1E-05 25.0 1.7 26 68-93 10-35 (58)
228 TIGR02990 ectoine_eutA ectoine 74.9 33 0.00072 25.7 9.2 100 5-110 113-229 (239)
229 cd03145 GAT1_cyanophycinase Ty 74.7 31 0.00067 25.3 8.9 86 2-89 17-124 (217)
230 cd05566 PTS_IIB_galactitol PTS 74.6 16 0.00034 22.5 5.6 52 25-88 18-69 (89)
231 CHL00073 chlN photochlorophyll 74.2 23 0.00049 29.4 7.8 73 14-89 195-268 (457)
232 COG1121 ZnuC ABC-type Mn/Zn tr 74.0 30 0.00066 26.4 7.9 116 11-130 29-159 (254)
233 PRK08618 ornithine cyclodeamin 73.2 15 0.00031 28.7 6.2 77 12-91 127-223 (325)
234 COG4641 Uncharacterized protei 73.2 3.8 8.3E-05 32.9 3.0 73 51-129 249-328 (373)
235 PRK13398 3-deoxy-7-phosphohept 72.9 40 0.00086 25.8 8.6 79 26-109 81-164 (266)
236 PRK12595 bifunctional 3-deoxy- 72.9 45 0.00099 26.6 9.0 80 25-109 171-255 (360)
237 COG3737 Uncharacterized conser 72.8 9.8 0.00021 25.8 4.4 36 3-38 60-98 (127)
238 cd04300 GT1_Glycogen_Phosphory 72.6 45 0.00098 29.7 9.5 53 41-93 610-666 (797)
239 PF01488 Shikimate_DH: Shikima 72.4 9.7 0.00021 25.7 4.6 74 7-83 7-99 (135)
240 PF05014 Nuc_deoxyrib_tr: Nucl 72.1 4.6 0.0001 26.3 2.8 38 54-91 56-98 (113)
241 TIGR01088 aroQ 3-dehydroquinat 71.8 21 0.00045 24.9 6.0 60 26-88 31-97 (141)
242 PRK00048 dihydrodipicolinate r 71.5 40 0.00086 25.3 8.1 38 52-89 53-91 (257)
243 PRK13302 putative L-aspartate 71.0 31 0.00067 26.2 7.5 74 5-89 23-98 (271)
244 COG4370 Uncharacterized protei 70.6 5.6 0.00012 31.6 3.3 73 50-130 302-381 (412)
245 PF10649 DUF2478: Protein of u 70.3 5.9 0.00013 28.1 3.1 55 60-117 94-155 (159)
246 PF02571 CbiJ: Precorrin-6x re 70.1 24 0.00052 26.7 6.6 48 42-89 46-100 (249)
247 TIGR00322 diphth2_R diphthamid 69.4 15 0.00032 29.0 5.6 72 12-88 233-310 (332)
248 PF13607 Succ_CoA_lig: Succiny 68.6 22 0.00048 24.4 5.7 102 17-123 6-136 (138)
249 PF02302 PTS_IIB: PTS system, 68.2 20 0.00044 21.9 5.1 68 15-89 2-74 (90)
250 COG2885 OmpA Outer membrane pr 67.9 22 0.00048 25.3 5.8 46 3-48 105-163 (190)
251 cd01916 ACS_1 Acetyl-CoA synth 67.7 46 0.001 29.3 8.5 77 14-91 202-297 (731)
252 PRK14985 maltodextrin phosphor 67.6 28 0.00061 30.9 7.2 53 41-93 609-665 (798)
253 PRK05752 uroporphyrinogen-III 67.0 50 0.0011 24.6 9.0 106 11-124 129-249 (255)
254 PRK10510 putative outer membra 66.6 19 0.00041 26.7 5.4 64 3-66 134-218 (219)
255 PRK08673 3-deoxy-7-phosphohept 66.0 66 0.0014 25.6 8.6 81 25-109 146-230 (335)
256 PRK14986 glycogen phosphorylas 65.5 38 0.00083 30.2 7.7 53 41-93 623-679 (815)
257 PRK10802 peptidoglycan-associa 65.4 9.4 0.0002 27.2 3.4 46 3-48 91-149 (173)
258 cd00316 Oxidoreductase_nitroge 65.2 66 0.0014 25.3 8.8 91 14-107 154-251 (399)
259 PF00533 BRCT: BRCA1 C Terminu 65.0 14 0.0003 21.6 3.7 63 12-87 8-70 (78)
260 PRK05678 succinyl-CoA syntheta 64.4 65 0.0014 25.0 8.7 110 15-127 148-289 (291)
261 COG1058 CinA Predicted nucleot 64.1 33 0.00072 26.2 6.3 76 13-88 4-93 (255)
262 TIGR00272 DPH2 diphthamide bio 63.9 14 0.00031 30.8 4.6 72 12-88 282-359 (496)
263 cd00027 BRCT Breast Cancer Sup 63.9 23 0.0005 19.6 7.2 61 13-87 2-63 (72)
264 COG1120 FepC ABC-type cobalami 63.7 58 0.0013 24.9 7.6 116 11-130 27-158 (258)
265 PRK13015 3-dehydroquinate dehy 63.5 30 0.00066 24.2 5.5 60 26-88 33-99 (146)
266 COG1122 CbiO ABC-type cobalt t 63.2 56 0.0012 24.5 7.4 119 11-130 29-158 (235)
267 KOG2648|consensus 63.2 25 0.00053 29.1 5.7 69 25-96 285-364 (453)
268 PF03575 Peptidase_S51: Peptid 63.1 9.6 0.00021 26.2 3.1 57 26-89 3-76 (154)
269 PRK05954 precorrin-8X methylmu 63.0 59 0.0013 24.0 9.1 65 40-105 122-195 (203)
270 cd03266 ABC_NatA_sodium_export 62.6 28 0.00061 25.0 5.6 117 11-130 30-156 (218)
271 PRK00696 sucC succinyl-CoA syn 62.5 78 0.0017 25.2 12.6 114 12-127 256-386 (388)
272 TIGR02518 EutH_ACDH acetaldehy 62.5 34 0.00074 28.4 6.6 58 28-89 154-214 (488)
273 cd07185 OmpA_C-like Peptidogly 62.5 25 0.00054 22.0 4.8 48 2-49 23-83 (106)
274 COG4850 Uncharacterized conser 62.5 20 0.00043 28.6 4.9 32 4-35 269-301 (373)
275 cd01967 Nitrogenase_MoFe_alpha 62.3 56 0.0012 26.0 7.7 72 13-88 161-237 (406)
276 COG1111 MPH1 ERCC4-like helica 62.3 38 0.00082 28.6 6.7 63 4-67 51-115 (542)
277 PRK02910 light-independent pro 62.1 39 0.00085 28.2 7.0 72 14-88 160-239 (519)
278 PRK13396 3-deoxy-7-phosphohept 62.0 81 0.0018 25.3 8.7 81 25-109 154-238 (352)
279 COG0745 OmpR Response regulato 62.0 63 0.0014 23.9 10.1 107 14-128 2-118 (229)
280 TIGR03569 NeuB_NnaB N-acetylne 61.8 51 0.0011 26.1 7.2 78 26-108 79-161 (329)
281 cd00466 DHQase_II Dehydroquina 61.5 31 0.00068 24.0 5.3 60 26-88 31-97 (140)
282 TIGR03855 NAD_NadX aspartate d 61.3 42 0.00091 25.0 6.4 68 12-90 1-69 (229)
283 COG0052 RpsB Ribosomal protein 61.2 46 0.001 25.4 6.5 75 12-88 64-185 (252)
284 PF06925 MGDG_synth: Monogalac 61.1 13 0.00029 25.8 3.6 21 26-46 146-166 (169)
285 TIGR03789 pdsO proteobacterial 61.0 14 0.00031 27.8 3.9 46 3-48 157-215 (239)
286 PF04577 DUF563: Protein of un 60.9 32 0.00069 24.2 5.6 70 14-88 104-179 (206)
287 PF02662 FlpD: Methyl-viologen 60.7 15 0.00033 24.7 3.6 31 26-56 80-112 (124)
288 COG5153 CVT17 Putative lipase 60.6 10 0.00022 30.0 3.0 43 52-94 268-312 (425)
289 KOG4540|consensus 60.6 10 0.00022 30.0 3.0 43 52-94 268-312 (425)
290 KOG1021|consensus 60.4 41 0.0009 27.7 6.7 41 50-90 334-376 (464)
291 PRK08811 uroporphyrinogen-III 60.4 72 0.0016 24.1 9.7 111 10-127 136-261 (266)
292 PRK08057 cobalt-precorrin-6x r 60.1 73 0.0016 24.1 7.7 47 43-89 46-99 (248)
293 PRK11524 putative methyltransf 59.8 23 0.00049 27.0 4.9 32 59-91 208-239 (284)
294 PF04430 DUF498: Protein of un 59.5 13 0.00027 24.3 3.0 42 3-47 44-88 (110)
295 PF07302 AroM: AroM protein; 59.4 73 0.0016 23.8 8.4 30 59-88 178-208 (221)
296 cd06259 YdcF-like YdcF-like. Y 59.3 51 0.0011 22.1 7.0 79 5-83 28-119 (150)
297 PRK05928 hemD uroporphyrinogen 59.0 65 0.0014 23.2 7.3 107 11-125 124-247 (249)
298 PF12738 PTCB-BRCT: twin BRCT 59.0 27 0.00058 20.0 4.1 59 15-88 3-61 (63)
299 COG0289 DapB Dihydrodipicolina 59.0 82 0.0018 24.3 9.6 72 54-127 64-145 (266)
300 TIGR01188 drrA daunorubicin re 58.9 44 0.00095 25.6 6.3 119 11-130 18-144 (302)
301 COG1519 KdtA 3-deoxy-D-manno-o 58.6 1E+02 0.0022 25.4 8.9 108 4-117 70-188 (419)
302 cd06578 HemD Uroporphyrinogen- 58.6 52 0.0011 23.4 6.4 103 11-120 121-237 (239)
303 COG2099 CobK Precorrin-6x redu 57.7 85 0.0018 24.1 8.2 62 28-89 162-229 (257)
304 PRK08057 cobalt-precorrin-6x r 57.3 82 0.0018 23.8 8.2 79 35-125 163-246 (248)
305 PRK09590 celB cellobiose phosp 57.1 37 0.00081 22.1 4.9 72 15-90 4-83 (104)
306 TIGR01278 DPOR_BchB light-inde 56.5 32 0.00069 28.7 5.5 71 14-87 160-238 (511)
307 KOG0058|consensus 56.3 20 0.00044 31.3 4.4 117 11-129 493-623 (716)
308 PF01170 UPF0020: Putative RNA 56.3 12 0.00026 26.6 2.7 49 60-109 29-88 (179)
309 TIGR00314 cdhA CO dehydrogenas 56.2 53 0.0011 29.2 6.9 70 42-122 281-350 (784)
310 PRK00941 acetyl-CoA decarbonyl 56.1 87 0.0019 27.9 8.2 78 13-91 238-334 (781)
311 cd01080 NAD_bind_m-THF_DH_Cycl 55.9 58 0.0013 23.0 6.1 68 10-82 42-109 (168)
312 cd03292 ABC_FtsE_transporter F 55.8 72 0.0016 22.7 7.3 117 11-130 26-156 (214)
313 PF06189 5-nucleotidase: 5'-nu 55.7 25 0.00054 27.0 4.3 70 13-88 187-257 (264)
314 cd06185 PDR_like Phthalate dio 55.6 21 0.00046 25.3 3.9 39 6-45 169-208 (211)
315 cd01981 Pchlide_reductase_B Pc 55.3 78 0.0017 25.5 7.5 92 14-108 164-265 (430)
316 COG3340 PepE Peptidase E [Amin 55.1 61 0.0013 24.3 6.2 60 25-89 51-125 (224)
317 cd03255 ABC_MJ0796_Lo1CDE_FtsE 54.2 78 0.0017 22.6 8.4 119 11-130 29-160 (218)
318 TIGR00960 3a0501s02 Type II (G 54.2 78 0.0017 22.6 7.6 118 11-130 28-158 (216)
319 PRK12311 rpsB 30S ribosomal pr 54.1 96 0.0021 24.6 7.5 31 59-89 152-182 (326)
320 PRK10908 cell division protein 53.8 81 0.0017 22.7 7.7 117 10-130 26-157 (222)
321 PF00148 Oxidored_nitro: Nitro 53.8 70 0.0015 25.3 6.9 73 14-89 146-223 (398)
322 PRK13805 bifunctional acetalde 53.5 97 0.0021 27.6 8.3 58 28-89 158-218 (862)
323 KOG2741|consensus 53.5 76 0.0017 25.4 6.9 96 3-105 21-119 (351)
324 PF15608 PELOTA_1: PELOTA RNA 53.1 45 0.00097 21.8 4.7 40 6-49 51-90 (100)
325 COG1908 FrhD Coenzyme F420-red 53.0 17 0.00037 24.8 2.7 21 26-46 81-101 (132)
326 COG1126 GlnQ ABC-type polar am 52.5 1E+02 0.0022 23.4 9.3 119 11-130 27-156 (240)
327 cd06217 FNR_iron_sulfur_bindin 52.2 19 0.00042 26.0 3.3 32 12-44 201-232 (235)
328 smart00292 BRCT breast cancer 51.8 43 0.00093 18.9 6.8 65 11-87 4-69 (80)
329 cd03263 ABC_subfamily_A The AB 51.7 66 0.0014 23.0 6.0 117 11-130 27-153 (220)
330 PF00691 OmpA: OmpA family; I 51.5 44 0.00095 20.6 4.5 45 3-48 20-79 (97)
331 TIGR01862 N2-ase-Ialpha nitrog 51.5 76 0.0016 25.9 6.9 74 13-89 192-269 (443)
332 TIGR02314 ABC_MetN D-methionin 51.3 1.2E+02 0.0026 23.9 9.0 119 11-130 30-160 (343)
333 PF02698 DUF218: DUF218 domain 51.1 18 0.00039 24.5 2.8 43 6-48 32-79 (155)
334 COG1018 Hmp Flavodoxin reducta 51.0 34 0.00073 26.1 4.5 44 6-50 188-233 (266)
335 PF13271 DUF4062: Domain of un 50.9 44 0.00096 20.5 4.3 42 24-65 14-58 (83)
336 PF07683 CobW_C: Cobalamin syn 50.7 15 0.00033 22.7 2.2 25 8-33 67-91 (94)
337 PF04954 SIP: Siderophore-inte 50.4 18 0.00039 23.9 2.6 35 12-47 80-115 (119)
338 cd06578 HemD Uroporphyrinogen- 50.3 84 0.0018 22.3 6.4 94 25-124 10-117 (239)
339 PRK13940 glutamyl-tRNA reducta 50.2 1E+02 0.0022 25.2 7.3 78 7-88 176-270 (414)
340 COG2884 FtsE Predicted ATPase 50.1 1.1E+02 0.0023 22.9 8.4 118 12-130 28-157 (223)
341 cd06212 monooxygenase_like The 49.5 23 0.00049 25.7 3.3 19 25-43 209-227 (232)
342 cd06303 PBP1_LuxPQ_Quorum_Sens 49.5 1E+02 0.0022 22.6 6.9 12 74-85 228-239 (280)
343 COG1587 HemD Uroporphyrinogen- 49.3 75 0.0016 23.6 6.1 107 13-126 124-245 (248)
344 cd01971 Nitrogenase_VnfN_like 49.2 68 0.0015 26.0 6.3 63 24-89 174-238 (427)
345 PRK05299 rpsB 30S ribosomal pr 49.0 1.2E+02 0.0025 23.1 7.7 30 59-88 157-186 (258)
346 PRK10499 PTS system N,N'-diace 48.8 69 0.0015 20.8 5.2 74 14-91 5-82 (106)
347 PF04413 Glycos_transf_N: 3-De 48.5 52 0.0011 23.6 4.9 116 4-126 42-168 (186)
348 PRK11160 cysteine/glutathione 48.4 1.2E+02 0.0027 25.4 7.8 112 11-130 365-495 (574)
349 cd01965 Nitrogenase_MoFe_beta_ 48.4 1.4E+02 0.0031 24.0 8.1 73 14-89 157-252 (428)
350 PRK10310 PTS system galactitol 48.3 69 0.0015 20.3 8.8 52 14-69 4-60 (94)
351 PRK00421 murC UDP-N-acetylmura 48.2 1.5E+02 0.0032 24.1 8.2 74 11-87 6-95 (461)
352 PF01118 Semialdhyde_dh: Semia 48.1 27 0.00059 22.8 3.2 83 4-92 16-100 (121)
353 PF03447 NAD_binding_3: Homose 48.0 13 0.00028 24.1 1.6 39 51-90 52-91 (117)
354 TIGR01501 MthylAspMutase methy 48.0 60 0.0013 22.2 5.0 22 25-47 69-90 (134)
355 PRK09493 glnQ glutamine ABC tr 47.8 1.1E+02 0.0023 22.3 7.4 120 11-130 26-156 (240)
356 PRK08286 cbiC cobalt-precorrin 47.7 1.2E+02 0.0025 22.7 8.5 66 40-105 133-206 (214)
357 TIGR03522 GldA_ABC_ATP gliding 47.5 1.2E+02 0.0026 23.2 7.1 120 10-130 26-153 (301)
358 PF01866 Diphthamide_syn: Puta 47.3 37 0.00081 26.3 4.3 72 12-88 210-287 (307)
359 PF02571 CbiJ: Precorrin-6x re 47.3 1.2E+02 0.0026 22.8 9.9 57 34-90 166-227 (249)
360 cd01972 Nitrogenase_VnfE_like 47.2 1.5E+02 0.0033 23.9 8.0 73 14-89 163-244 (426)
361 cd06187 O2ase_reductase_like T 47.2 21 0.00045 25.6 2.7 9 8-16 152-160 (224)
362 cd01976 Nitrogenase_MoFe_alpha 47.0 1.4E+02 0.0031 24.1 7.8 74 13-89 173-250 (421)
363 PRK05331 putative phosphate ac 46.8 57 0.0012 25.8 5.3 40 5-48 24-63 (334)
364 cd05125 Mth938_2P1-like Mth938 46.5 42 0.0009 22.3 3.9 43 3-48 45-90 (114)
365 PRK06975 bifunctional uroporph 46.5 2E+02 0.0042 25.0 8.9 109 10-126 137-266 (656)
366 PF10672 Methyltrans_SAM: S-ad 46.5 75 0.0016 24.6 5.8 69 54-123 118-191 (286)
367 TIGR00758 UDG_fam4 uracil-DNA 46.4 46 0.00099 23.5 4.4 39 10-48 19-70 (173)
368 PRK10586 putative oxidoreducta 46.4 1.5E+02 0.0032 23.6 8.4 79 6-90 28-118 (362)
369 PRK06091 membrane protein FdrA 46.3 1.9E+02 0.0041 24.8 8.7 61 1-64 106-170 (555)
370 cd06184 flavohem_like_fad_nad_ 46.2 20 0.00043 26.3 2.5 33 13-46 210-242 (247)
371 cd06295 PBP1_CelR Ligand bindi 46.2 1E+02 0.0022 22.3 6.4 62 27-90 31-95 (275)
372 TIGR02868 CydC thiol reductant 45.9 1.6E+02 0.0034 24.3 8.0 112 11-130 360-490 (529)
373 PF01531 Glyco_transf_11: Glyc 45.7 1.2E+02 0.0027 23.2 7.0 57 3-66 197-254 (298)
374 COG3613 Nucleoside 2-deoxyribo 45.7 97 0.0021 22.3 5.8 86 13-99 5-117 (172)
375 cd00133 PTS_IIB PTS_IIB: subun 45.6 60 0.0013 18.8 5.1 53 25-89 17-69 (84)
376 PF00107 ADH_zinc_N: Zinc-bind 45.6 73 0.0016 20.4 5.1 113 5-124 8-127 (130)
377 PRK13538 cytochrome c biogenes 45.3 1.1E+02 0.0024 21.7 7.5 114 11-130 26-149 (204)
378 PF02670 DXP_reductoisom: 1-de 45.2 97 0.0021 21.1 6.2 80 5-87 16-119 (129)
379 cd03262 ABC_HisP_GlnQ_permease 45.2 1.1E+02 0.0024 21.7 7.7 120 10-130 24-155 (213)
380 PRK08328 hypothetical protein; 45.0 82 0.0018 23.3 5.7 51 46-96 105-157 (231)
381 TIGR02069 cyanophycinase cyano 44.9 1.3E+02 0.0029 22.6 7.7 85 3-89 17-123 (250)
382 COG1748 LYS9 Saccharopine dehy 44.5 1.7E+02 0.0037 23.8 9.4 45 46-90 55-100 (389)
383 PRK08285 cobH precorrin-8X met 43.8 1.3E+02 0.0029 22.3 8.8 65 40-105 128-203 (208)
384 PRK05282 (alpha)-aspartyl dipe 43.8 1.4E+02 0.003 22.4 7.1 70 11-89 30-120 (233)
385 PRK13699 putative methylase; P 43.6 60 0.0013 24.0 4.8 32 59-91 163-194 (227)
386 PRK08051 fre FMN reductase; Va 43.5 19 0.00041 26.3 2.1 13 5-17 153-165 (232)
387 PRK05805 phosphate butyryltran 43.1 72 0.0016 24.8 5.3 38 7-48 37-74 (301)
388 TIGR00640 acid_CoA_mut_C methy 43.0 88 0.0019 21.1 5.2 28 27-55 72-100 (132)
389 cd06215 FNR_iron_sulfur_bindin 42.9 29 0.00062 25.0 2.9 30 14-44 199-228 (231)
390 TIGR02853 spore_dpaA dipicolin 42.9 1.5E+02 0.0033 22.7 9.1 109 11-123 150-281 (287)
391 COG2247 LytB Putative cell wal 42.6 75 0.0016 25.3 5.3 85 4-92 69-165 (337)
392 TIGR01142 purT phosphoribosylg 42.6 1.6E+02 0.0035 22.9 9.9 72 14-86 1-89 (380)
393 PRK06264 cbiC precorrin-8X met 42.5 1.4E+02 0.003 22.2 8.7 26 79-104 175-200 (210)
394 cd05568 PTS_IIB_bgl_like PTS_I 42.5 73 0.0016 18.9 6.0 62 15-88 3-66 (85)
395 TIGR00243 Dxr 1-deoxy-D-xylulo 42.3 1.8E+02 0.0039 23.8 7.5 86 5-93 19-128 (389)
396 cd06194 FNR_N-term_Iron_sulfur 42.2 30 0.00065 24.8 2.9 20 25-44 199-218 (222)
397 PRK08291 ectoine utilization p 42.1 1.1E+02 0.0023 23.9 6.2 74 13-88 133-226 (330)
398 TIGR03608 L_ocin_972_ABC putat 42.1 1.2E+02 0.0026 21.3 7.8 119 11-130 23-154 (206)
399 PRK00877 hisD bifunctional his 42.1 34 0.00074 28.1 3.4 61 32-93 146-213 (425)
400 cd06188 NADH_quinone_reductase 41.9 22 0.00048 26.8 2.3 19 25-43 261-279 (283)
401 TIGR01019 sucCoAalpha succinyl 41.7 1.6E+02 0.0035 22.7 10.6 75 15-90 146-233 (286)
402 CHL00076 chlB photochlorophyll 41.7 1.2E+02 0.0026 25.4 6.7 73 13-88 164-244 (513)
403 PRK11475 DNA-binding transcrip 41.0 1.2E+02 0.0026 22.0 6.0 6 10-15 37-42 (207)
404 TIGR02536 eut_hyp ethanolamine 40.8 1.4E+02 0.0031 22.0 6.3 18 73-90 81-98 (207)
405 PRK13606 LPPG:FO 2-phospho-L-l 40.8 88 0.0019 24.6 5.4 67 40-108 163-244 (303)
406 TIGR03215 ac_ald_DH_ac acetald 40.8 96 0.0021 24.0 5.6 75 9-91 22-97 (285)
407 PRK05782 bifunctional sirohydr 40.6 1.9E+02 0.004 23.0 8.6 64 40-104 257-328 (335)
408 cd06191 FNR_iron_sulfur_bindin 40.4 26 0.00056 25.4 2.4 21 24-44 208-228 (231)
409 TIGR01283 nifE nitrogenase mol 40.4 1.1E+02 0.0023 25.1 6.1 72 13-87 198-273 (456)
410 TIGR01288 nodI ATP-binding ABC 40.3 1.4E+02 0.003 22.8 6.5 117 11-130 29-155 (303)
411 TIGR01319 glmL_fam conserved h 40.3 95 0.0021 25.9 5.8 59 4-63 114-176 (463)
412 COG2204 AtoC Response regulato 40.2 2.2E+02 0.0048 23.8 8.9 93 13-112 5-104 (464)
413 cd06211 phenol_2-monooxygenase 40.2 22 0.00047 26.0 1.9 12 6-17 161-172 (238)
414 PF07726 AAA_3: ATPase family 40.1 36 0.00077 23.4 2.8 42 14-55 1-43 (131)
415 PRK06856 DNA polymerase III su 40.0 32 0.0007 23.4 2.6 37 10-46 32-71 (128)
416 cd01574 PBP1_LacI Ligand-bindi 40.0 1.4E+02 0.003 21.4 6.8 17 74-90 71-87 (264)
417 PRK11153 metN DL-methionine tr 39.8 1.8E+02 0.004 22.7 8.9 117 11-130 30-160 (343)
418 PRK08300 acetaldehyde dehydrog 39.5 1.9E+02 0.004 22.7 7.9 76 9-91 25-103 (302)
419 cd06189 flavin_oxioreductase N 39.4 23 0.0005 25.6 1.9 12 6-17 150-161 (224)
420 cd05560 Xcc1710_like Xcc1710_l 39.3 67 0.0014 21.0 4.0 32 4-37 46-80 (109)
421 cd06198 FNR_like_3 NAD(P) bind 39.2 28 0.0006 24.9 2.3 31 13-44 182-212 (216)
422 cd06216 FNR_iron_sulfur_bindin 39.2 54 0.0012 23.9 4.0 30 13-44 211-240 (243)
423 PRK11866 2-oxoacid ferredoxin 39.1 1.5E+02 0.0032 22.9 6.4 66 25-92 19-87 (279)
424 PLN02696 1-deoxy-D-xylulose-5- 39.0 2.3E+02 0.005 23.6 7.9 42 52-93 140-184 (454)
425 TIGR03586 PseI pseudaminic aci 38.7 2E+02 0.0043 22.8 9.8 80 27-110 81-164 (327)
426 COG1049 AcnB Aconitase B [Ener 38.6 68 0.0015 28.0 4.7 114 13-126 693-825 (852)
427 TIGR01186 proV glycine betaine 38.5 1.8E+02 0.0039 23.2 7.0 118 11-130 18-149 (363)
428 cd07095 ALDH_SGSD_AstD N-succi 38.2 59 0.0013 26.3 4.3 43 67-109 105-154 (431)
429 TIGR00236 wecB UDP-N-acetylglu 38.2 1.9E+02 0.004 22.3 7.3 81 7-88 23-116 (365)
430 TIGR01016 sucCoAbeta succinyl- 38.1 2E+02 0.0044 22.8 12.5 112 13-126 257-385 (386)
431 cd06209 BenDO_FAD_NAD Benzoate 37.8 31 0.00068 24.9 2.5 18 26-43 206-223 (228)
432 TIGR01850 argC N-acetyl-gamma- 37.7 1E+02 0.0022 24.4 5.4 83 3-91 16-101 (346)
433 TIGR01860 VNFD nitrogenase van 37.6 2.3E+02 0.005 23.3 7.7 74 13-89 202-279 (461)
434 cd06196 FNR_like_1 Ferredoxin 37.3 33 0.0007 24.6 2.5 30 13-43 187-216 (218)
435 PRK13632 cbiO cobalt transport 37.0 82 0.0018 23.6 4.7 117 11-130 34-162 (271)
436 cd07113 ALDH_PADH_NahF Escheri 36.8 74 0.0016 26.1 4.7 42 68-109 151-199 (477)
437 cd06267 PBP1_LacI_sugar_bindin 36.8 1.5E+02 0.0032 20.8 7.3 32 59-90 55-86 (264)
438 TIGR03415 ABC_choXWV_ATP choli 36.6 2.3E+02 0.0049 22.9 9.4 116 11-130 49-184 (382)
439 PRK07742 phosphate butyryltran 36.2 2E+02 0.0044 22.2 7.2 54 6-64 35-95 (299)
440 PF13073 DUF3937: Protein of u 35.8 14 0.0003 22.3 0.3 20 1-20 44-63 (73)
441 COG0373 HemA Glutamyl-tRNA red 35.6 1.6E+02 0.0036 24.1 6.4 57 7-66 173-245 (414)
442 cd07037 TPP_PYR_MenD Pyrimidin 35.5 40 0.00087 23.6 2.6 23 72-94 76-98 (162)
443 PLN02419 methylmalonate-semial 35.5 85 0.0018 27.0 4.9 50 60-109 250-306 (604)
444 PLN02968 Probable N-acetyl-gam 35.4 64 0.0014 25.9 4.1 35 58-92 103-137 (381)
445 COG3414 SgaB Phosphotransferas 35.3 1E+02 0.0022 19.7 4.3 50 14-67 3-57 (93)
446 cd07142 ALDH_F2BC Arabidosis a 35.3 96 0.0021 25.4 5.2 36 74-109 161-198 (476)
447 TIGR01658 EYA-cons_domain eyes 35.2 38 0.00083 26.0 2.6 34 1-38 217-252 (274)
448 TIGR02627 rhamnulo_kin rhamnul 35.2 1.8E+02 0.0038 23.6 6.7 40 78-121 408-447 (454)
449 PRK10851 sulfate/thiosulfate t 35.0 2.3E+02 0.0049 22.4 7.1 117 11-130 27-156 (353)
450 PRK07239 bifunctional uroporph 35.0 2.3E+02 0.0049 22.4 7.5 110 11-126 141-276 (381)
451 cd03265 ABC_DrrA DrrA is the A 34.7 1.7E+02 0.0037 20.9 6.0 118 11-130 25-151 (220)
452 TIGR02130 dapB_plant dihydrodi 34.7 1.4E+02 0.0031 23.1 5.7 75 51-126 59-143 (275)
453 PRK13303 L-aspartate dehydroge 34.6 1.8E+02 0.004 21.8 6.3 33 58-90 60-93 (265)
454 TIGR01851 argC_other N-acetyl- 34.6 1E+02 0.0022 24.2 4.9 76 14-91 3-82 (310)
455 COG5017 Uncharacterized conser 34.5 1.7E+02 0.0036 20.7 6.2 48 42-92 48-95 (161)
456 PRK10886 DnaA initiator-associ 34.3 1.8E+02 0.0039 21.1 6.3 52 11-65 109-162 (196)
457 cd03231 ABC_CcmA_heme_exporter 34.3 1.7E+02 0.0036 20.7 8.4 112 11-130 25-145 (201)
458 cd00322 FNR_like Ferredoxin re 34.3 34 0.00074 24.2 2.2 9 9-17 152-160 (223)
459 cd07105 ALDH_SaliADH Salicylal 34.2 1.5E+02 0.0033 23.8 6.1 36 74-109 118-155 (432)
460 PRK11199 tyrA bifunctional cho 34.2 1.7E+02 0.0038 23.2 6.3 66 13-81 99-164 (374)
461 PRK12447 histidinol dehydrogen 34.2 47 0.001 27.3 3.1 61 32-93 141-208 (426)
462 KOG0830|consensus 34.2 2.1E+02 0.0046 21.8 7.6 78 10-89 41-119 (254)
463 TIGR00958 3a01208 Conjugate Tr 34.1 2E+02 0.0043 24.9 7.1 112 11-130 506-637 (711)
464 TIGR01082 murC UDP-N-acetylmur 34.1 2.5E+02 0.0055 22.7 7.7 30 58-87 57-87 (448)
465 PRK11579 putative oxidoreducta 34.1 1.3E+02 0.0029 23.3 5.6 73 5-89 22-95 (346)
466 PRK05718 keto-hydroxyglutarate 34.0 1.9E+02 0.0041 21.3 6.7 77 3-88 57-134 (212)
467 PF00763 THF_DHG_CYH: Tetrahyd 34.0 64 0.0014 21.3 3.3 49 11-59 30-81 (117)
468 PF00318 Ribosomal_S2: Ribosom 34.0 60 0.0013 23.7 3.5 30 60-89 144-173 (211)
469 TIGR02706 P_butyryltrans phosp 34.0 1.5E+02 0.0032 22.9 5.8 55 7-65 33-93 (294)
470 PRK00436 argC N-acetyl-gamma-g 34.0 1.5E+02 0.0032 23.3 5.8 35 58-92 67-102 (343)
471 PLN03033 2-dehydro-3-deoxyphos 33.9 2.3E+02 0.005 22.2 7.4 81 25-110 76-161 (290)
472 cd03218 ABC_YhbG The ABC trans 33.9 1.8E+02 0.0039 20.9 7.1 118 11-130 25-153 (232)
473 PF10933 DUF2827: Protein of u 33.8 1.1E+02 0.0023 24.8 5.0 59 26-87 238-299 (364)
474 cd01968 Nitrogenase_NifE_I Nit 33.8 1.7E+02 0.0038 23.4 6.3 73 13-88 159-235 (410)
475 cd06193 siderophore_interactin 33.7 51 0.0011 24.1 3.1 35 12-47 198-233 (235)
476 TIGR02015 BchY chlorophyllide 33.5 2.6E+02 0.0057 22.7 7.9 83 14-103 167-251 (422)
477 cd06195 FNR1 Ferredoxin-NADP+ 33.5 68 0.0015 23.3 3.7 32 12-44 201-238 (241)
478 PRK14573 bifunctional D-alanyl 33.4 3.4E+02 0.0074 24.0 8.5 70 15-87 7-92 (809)
479 PF10686 DUF2493: Protein of u 33.3 1.1E+02 0.0024 18.4 4.5 36 6-44 27-63 (71)
480 cd06183 cyt_b5_reduct_like Cyt 33.2 42 0.00091 24.1 2.5 29 14-43 203-232 (234)
481 PRK13770 histidinol dehydrogen 33.1 54 0.0012 26.9 3.3 61 32-93 136-203 (416)
482 cd06284 PBP1_LacI_like_6 Ligan 33.0 1.8E+02 0.0039 20.7 7.0 62 25-89 18-84 (267)
483 cd06214 PA_degradation_oxidore 32.9 35 0.00076 24.7 2.1 31 13-44 207-237 (241)
484 PF13174 TPR_6: Tetratricopept 32.9 25 0.00054 16.7 0.9 12 2-13 22-33 (33)
485 cd06301 PBP1_rhizopine_binding 32.9 1.9E+02 0.0041 20.8 6.2 9 3-11 145-153 (272)
486 COG1830 FbaB DhnA-type fructos 32.8 1.2E+02 0.0026 23.4 4.9 68 60-128 180-259 (265)
487 PRK11144 modC molybdate transp 32.8 2.4E+02 0.0053 22.1 7.4 111 11-130 23-148 (352)
488 COG0194 Gmk Guanylate kinase [ 32.7 83 0.0018 23.0 3.9 57 4-64 106-164 (191)
489 PRK12464 1-deoxy-D-xylulose 5- 32.6 2.7E+02 0.006 22.6 7.6 86 5-93 14-121 (383)
490 COG1440 CelA Phosphotransferas 32.5 1.5E+02 0.0032 19.5 6.2 73 14-90 3-81 (102)
491 PRK11869 2-oxoacid ferredoxin 32.4 1.5E+02 0.0033 22.8 5.6 66 25-92 20-88 (280)
492 CHL00067 rps2 ribosomal protei 32.3 59 0.0013 24.3 3.2 31 59-89 161-191 (230)
493 COG4230 Delta 1-pyrroline-5-ca 32.3 85 0.0018 27.2 4.3 44 66-109 243-293 (769)
494 COG0458 CarB Carbamoylphosphat 32.2 2.9E+02 0.0062 22.7 7.8 108 6-126 66-183 (400)
495 PF00389 2-Hacid_dh: D-isomer 32.1 1.5E+02 0.0032 19.4 8.3 61 28-93 11-71 (133)
496 PRK10684 HCP oxidoreductase, N 32.1 65 0.0014 24.9 3.5 77 12-91 203-287 (332)
497 PF13701 DDE_Tnp_1_4: Transpos 31.8 71 0.0015 26.3 3.8 37 2-38 207-243 (448)
498 TIGR01011 rpsB_bact ribosomal 31.8 2.2E+02 0.0047 21.2 8.1 31 59-89 155-185 (225)
499 COG2949 SanA Uncharacterized m 31.7 2.1E+02 0.0046 21.5 5.9 80 13-93 95-184 (235)
500 PF02570 CbiC: Precorrin-8X me 31.7 2.1E+02 0.0046 21.0 7.2 65 40-104 120-192 (198)
No 1
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=3.4e-36 Score=241.70 Aligned_cols=130 Identities=60% Similarity=0.904 Sum_probs=107.1
Q ss_pred ChHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 1 MSDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 1 ~~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
++|++||+++|+++|++...+...++.+++.++++|++++||+|.+..++++|+..|+.+||+|||+|++||+|++||||
T Consensus 303 ~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALw 382 (468)
T PF13844_consen 303 DLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALW 382 (468)
T ss_dssp HHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHH
Confidence 37999999999999999886545678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
||+||||++|+.+++|+++++|+.+|++|||+.|.++|+++|++|++|++
T Consensus 383 mGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~ 432 (468)
T PF13844_consen 383 MGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPE 432 (468)
T ss_dssp HT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HH
T ss_pred cCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999864
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.1e-32 Score=219.34 Aligned_cols=127 Identities=40% Similarity=0.574 Sum_probs=121.5
Q ss_pred hHHHHHhhCCCcEEEEeecCccc---HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVG---EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDV 78 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~---~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEA 78 (130)
.|.+|++.+||++|++.++ |++ ..++++++++.|++.+|++|++..+.++|.+.|+.+|+|||||||++++|++||
T Consensus 449 ~wmqIL~~vP~Svl~L~~~-~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~da 527 (620)
T COG3914 449 LWMQILSAVPNSVLLLKAG-GDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDA 527 (620)
T ss_pred HHHHHHHhCCCcEEEEecC-CCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCCCccchHHH
Confidence 6999999999999999996 343 568999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 79 LWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 79 la~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
+|||+||||..|+.+++|.+++|+...|++|+|++|.++|+++|+++++|.
T Consensus 528 Lwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dr 578 (620)
T COG3914 528 LWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDR 578 (620)
T ss_pred HHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccH
Confidence 999999999999999999999999999999999999999999999999985
No 3
>KOG4626|consensus
Probab=99.95 E-value=3.4e-28 Score=198.31 Aligned_cols=130 Identities=67% Similarity=1.070 Sum_probs=124.9
Q ss_pred ChHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 1 MSDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 1 ~~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
++|++||+++||++||+...+.-++++++..+.++|++++||+|.+-...+|+.+.++.+||+|||++++|.+|.+|.+|
T Consensus 777 ~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw 856 (966)
T KOG4626|consen 777 QMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHTTGMDVLW 856 (966)
T ss_pred HHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCcccchhhhc
Confidence 58999999999999999998666788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
+|+|+||++|+.+++|+++|++..+|++++|+.+.+||+++|++|+.|.+
T Consensus 857 ~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~ 906 (966)
T KOG4626|consen 857 AGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKE 906 (966)
T ss_pred cCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHH
Confidence 99999999999999999999999999999999999999999999999853
No 4
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.78 E-value=1.7e-18 Score=137.91 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=99.8
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-------CCCchH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-------CNGHTT 74 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-------~~~g~~ 74 (130)
+++++.++.|+.+++++|+ |+.++.++++++++|++ ++|.|+|+++.+++..+|+.||+|+.|+. ++.|++
T Consensus 243 a~~~l~~~~~~~~l~ivG~-G~~~~~l~~~~~~~~l~-~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~ 320 (406)
T PRK15427 243 ACRQLKEQGVAFRYRILGI-GPWERRLRTLIEQYQLE-DVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVA 320 (406)
T ss_pred HHHHHHhhCCCEEEEEEEC-chhHHHHHHHHHHcCCC-CeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHH
Confidence 4566777789999999996 67888999999999997 99999999999999999999999998874 567999
Q ss_pred HHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhcc-CCC
Q psy15363 75 SMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT-DRD 130 (130)
Q Consensus 75 ~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~-d~e 130 (130)
++|||+||+|||+++...... ++ ..|..+++. .|.+++.+...++++ |++
T Consensus 321 llEAma~G~PVI~t~~~g~~E-----~v-~~~~~G~lv~~~d~~~la~ai~~l~~~d~~ 373 (406)
T PRK15427 321 LMEAMAVGIPVVSTLHSGIPE-----LV-EADKSGWLVPENDAQALAQRLAAFSQLDTD 373 (406)
T ss_pred HHHHHhCCCCEEEeCCCCchh-----hh-cCCCceEEeCCCCHHHHHHHHHHHHhCCHH
Confidence 999999999999986543222 22 225566655 489999999999988 763
No 5
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.74 E-value=2.3e-17 Score=127.08 Aligned_cols=121 Identities=21% Similarity=0.187 Sum_probs=97.6
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-------CCCchH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-------CNGHTT 74 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-------~~~g~~ 74 (130)
++.++.++.|+.+|+++|. ++..+.++++++++|+. ++|+|.|.++.+++..+|+.+|+++.|+. +++|++
T Consensus 209 a~~~l~~~~~~~~l~ivG~-g~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~ 286 (367)
T cd05844 209 AFARLARRVPEVRLVIIGD-GPLLAALEALARALGLG-GRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVV 286 (367)
T ss_pred HHHHHHHhCCCeEEEEEeC-chHHHHHHHHHHHcCCC-CeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchH
Confidence 4667778889999999996 57778899999999997 99999999999999999999999998763 467999
Q ss_pred HHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 75 SMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 75 ~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
++|||+||+|||+.+...... ++.. +-.+++. .|.+++++...++++|++
T Consensus 287 ~~EA~a~G~PvI~s~~~~~~e-----~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 287 LLEAQASGVPVVATRHGGIPE-----AVED-GETGLLVPEGDVAALAAALGRLLADPD 338 (367)
T ss_pred HHHHHHcCCCEEEeCCCCchh-----heec-CCeeEEECCCCHHHHHHHHHHHHcCHH
Confidence 999999999999987653322 2211 3334444 488899999999888763
No 6
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.74 E-value=2.9e-17 Score=129.67 Aligned_cols=120 Identities=12% Similarity=-0.042 Sum_probs=96.8
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
++..+.++.|+.+|+++|. ++..+.++++++++|++ ++|.|+|.++.+++..+|+.+|+++.|+. +++|++++|||+
T Consensus 214 a~~~l~~~~~~~~l~i~G~-g~~~~~l~~~~~~~~l~-~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma 291 (398)
T cd03796 214 IIPEICKKHPNVRFIIGGD-GPKRILLEEMREKYNLQ-DRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAAS 291 (398)
T ss_pred HHHHHHhhCCCEEEEEEeC-CchHHHHHHHHHHhCCC-CeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHH
Confidence 4666777889999999996 57778899999999997 99999999999999999999999988874 577999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
||+|||+.+...... ++.. |-.-++..|.+++.+...++++++
T Consensus 292 ~G~PVI~s~~gg~~e-----~i~~-~~~~~~~~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 292 CGLLVVSTRVGGIPE-----VLPP-DMILLAEPDVESIVRKLEEAISIL 334 (398)
T ss_pred cCCCEEECCCCCchh-----heeC-CceeecCCCHHHHHHHHHHHHhCh
Confidence 999999986543322 2221 222345568888888888887753
No 7
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.73 E-value=3.7e-17 Score=130.72 Aligned_cols=123 Identities=18% Similarity=0.126 Sum_probs=97.7
Q ss_pred hHHHHHhhCCC-----cEEEEeecCcc-----cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CC
Q psy15363 2 SDIFVLKAVPN-----SILWLLKFPAV-----GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CN 70 (130)
Q Consensus 2 ~w~~il~~~P~-----a~l~i~g~~~~-----~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~ 70 (130)
+|+++.++.|+ .+|+|+|++.. ..+.|+++++++|++ ++|+|+|.++.+++..+|+.||+++.|+. ++
T Consensus 258 A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~-~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~ 336 (419)
T cd03806 258 AFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLE-DKVEFVVNAPFEELLEELSTASIGLHTMWNEH 336 (419)
T ss_pred HHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCC-CeEEEecCCCHHHHHHHHHhCeEEEECCccCC
Confidence 57778877764 99999996321 246788899999997 99999999999999999999999998874 67
Q ss_pred CchHHHHHHhcCCcEEecCCCchhhhhHHHHHH--hcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 71 GHTTSMDVLWTGTPVVTLPGETLASRVAASQLA--TLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 71 ~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~--~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
+|++++|||+||+|||+.+...... .++. ..|..+++.+|.+++.+...++++|+
T Consensus 337 Fgi~~lEAMa~G~pvIa~~~ggp~~----~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 337 FGIGVVEYMAAGLIPLAHASGGPLL----DIVVPWDGGPTGFLASTAEEYAEAIEKILSLS 393 (419)
T ss_pred cccHHHHHHHcCCcEEEEcCCCCch----heeeccCCCCceEEeCCHHHHHHHHHHHHhCC
Confidence 8999999999999999886321111 1111 02556777889999999999999875
No 8
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.73 E-value=3.3e-17 Score=129.13 Aligned_cols=123 Identities=19% Similarity=0.127 Sum_probs=92.0
Q ss_pred hHHHHHhhCCCcEEEEeecCcc--------cHHHHHHHHHHcCC--CCCCEEEecCCCHHHHHHhhccccEEEcCC-CCC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV--------GEANIQATAQALGL--DQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCN 70 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~--------~~~~l~~~~~~~g~--~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~ 70 (130)
+++++.++.|+.+|+++|++++ ..+..+++.++++. ..++|+|+|+++++++..+|+.+|+++.|+ +++
T Consensus 233 a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~ 312 (396)
T cd03818 233 ALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFV 312 (396)
T ss_pred HHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccc
Confidence 5677788899999999996321 11123344455443 238999999999999999999999998766 677
Q ss_pred CchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 71 GHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 71 ~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
.|++++|||+||+|||+++...... ++. .|.++++. .|.+++.+...++++|++
T Consensus 313 ~~~~llEAmA~G~PVIas~~~g~~e-----~i~-~~~~G~lv~~~d~~~la~~i~~ll~~~~ 368 (396)
T cd03818 313 LSWSLLEAMACGCLVVGSDTAPVRE-----VIT-DGENGLLVDFFDPDALAAAVIELLDDPA 368 (396)
T ss_pred cchHHHHHHHCCCCEEEcCCCCchh-----hcc-cCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 8999999999999999987543322 222 25556654 489999999999998863
No 9
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.70 E-value=1.1e-16 Score=122.68 Aligned_cols=119 Identities=20% Similarity=0.192 Sum_probs=95.9
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
++.++.++.|+.+++++|+ ++..+.+++.++++++. ++|.|+|+ .+++..+|+.||+++.|+. ++.|++++|||+
T Consensus 213 a~~~l~~~~~~~~l~ivG~-g~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma 288 (358)
T cd03812 213 IFAELLKKNPNAKLLLVGD-GELEEEIKKKVKELGLE-DKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQA 288 (358)
T ss_pred HHHHHHHhCCCeEEEEEeC-CchHHHHHHHHHhcCCC-CcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHH
Confidence 5677778889999999996 67778899999999997 99999998 4678889999999998875 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCcee-cCHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va-~~~~~y~~~a~~l~~d~e 130 (130)
+|+|||+++...... ++.. +...+.. ++++++.+...++++||+
T Consensus 289 ~G~PvI~s~~~~~~~-----~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 289 SGLPCILSDTITKEV-----DLTD-LVKFLSLDESPEIWAEEILKLKSEDR 333 (358)
T ss_pred hCCCEEEEcCCchhh-----hhcc-CccEEeCCCCHHHHHHHHHHHHhCcc
Confidence 999999987543322 2222 3333444 456999999999999985
No 10
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.70 E-value=2e-16 Score=123.35 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=95.8
Q ss_pred hHHHHHhhC---CCcEEEEeecCccc--------HHHHHHHHHH-cCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-
Q psy15363 2 SDIFVLKAV---PNSILWLLKFPAVG--------EANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL- 68 (130)
Q Consensus 2 ~w~~il~~~---P~a~l~i~g~~~~~--------~~~l~~~~~~-~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~- 68 (130)
++.++.++. |+.+|+++|++ +. .+.+++++++ +|++ ++|.|+|+++.+++..+|+.+|+++.|+.
T Consensus 232 a~~~l~~~~~~~~~~~l~i~G~~-~~~~~~~~~~~~~l~~~~~~~~~l~-~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~ 309 (392)
T cd03805 232 AFAILKDKLAEFKNVRLVIAGGY-DPRVAENVEYLEELQRLAEELLLLE-DQVIFLPSISDSQKELLLSSARALLYTPSN 309 (392)
T ss_pred HHHHHHhhcccccCeEEEEEcCC-CCCCchhHHHHHHHHHHHHHhcCCC-ceEEEeCCCChHHHHHHHhhCeEEEECCCc
Confidence 566777776 89999999963 32 2678888898 9997 99999999999999999999999987765
Q ss_pred CCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCc-eecCHHHHHHHHHHhccCCC
Q psy15363 69 CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPEL-IARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 69 ~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~-va~~~~~y~~~a~~l~~d~e 130 (130)
+++|++++|||+||+|||+++....... +.. |..++ +..|++++.+...++++|++
T Consensus 310 E~~g~~~lEAma~G~PvI~s~~~~~~e~-----i~~-~~~g~~~~~~~~~~a~~i~~l~~~~~ 366 (392)
T cd03805 310 EHFGIVPLEAMYAGKPVIACNSGGPLET-----VVD-GETGFLCEPTPEEFAEAMLKLANDPD 366 (392)
T ss_pred CCCCchHHHHHHcCCCEEEECCCCcHHH-----hcc-CCceEEeCCCHHHHHHHHHHHHhChH
Confidence 5679999999999999999875533332 221 33454 44688999999999888763
No 11
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.70 E-value=8.9e-17 Score=130.10 Aligned_cols=114 Identities=15% Similarity=0.022 Sum_probs=91.2
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+++++.+..|+.+|+|+|+ |+.++.|++.++++|++ .++ |.|..+.++ +|+.+|||+.||. +++|++++||||
T Consensus 249 a~~~l~~~~~~~~l~ivGd-Gp~~~~L~~~a~~l~l~-~~v-f~G~~~~~~---~~~~~DvFv~pS~~Et~g~v~lEAmA 322 (462)
T PLN02846 249 LLHKHQKELSGLEVDLYGS-GEDSDEVKAAAEKLELD-VRV-YPGRDHADP---LFHDYKVFLNPSTTDVVCTTTAEALA 322 (462)
T ss_pred HHHHHHhhCCCeEEEEECC-CccHHHHHHHHHhcCCc-EEE-ECCCCCHHH---HHHhCCEEEECCCcccchHHHHHHHH
Confidence 4667777789999999997 79999999999999986 555 889876654 6778899999885 678999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
||+|||+.+... ..++.. |-+.+..+|.++|++...+++++
T Consensus 323 ~G~PVVa~~~~~------~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 323 MGKIVVCANHPS------NEFFKQ-FPNCRTYDDGKGFVRATLKALAE 363 (462)
T ss_pred cCCcEEEecCCC------cceeec-CCceEecCCHHHHHHHHHHHHcc
Confidence 999999986541 123322 55566678999999999888774
No 12
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.70 E-value=2.1e-16 Score=124.25 Aligned_cols=121 Identities=23% Similarity=0.210 Sum_probs=95.9
Q ss_pred hHHHHHhhCCC--cEEEEeecC---c-ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchH
Q psy15363 2 SDIFVLKAVPN--SILWLLKFP---A-VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTT 74 (130)
Q Consensus 2 ~w~~il~~~P~--a~l~i~g~~---~-~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~ 74 (130)
++.+++++.|+ .+|+++|++ + +..+.++++++++++. ++|+|+|.++.+++..+|+.||+++.|+. +++|++
T Consensus 240 a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~-~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~ 318 (405)
T TIGR03449 240 AVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIA-DRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLV 318 (405)
T ss_pred HHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCC-ceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChH
Confidence 46677788887 899999952 2 3456789999999997 89999999999999999999999988764 677999
Q ss_pred HHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 75 SMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 75 ~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
++|||+||+|||+.+..... .++. .|-.+++. .|.+++.+...++++|+
T Consensus 319 ~lEAma~G~Pvi~~~~~~~~-----e~i~-~~~~g~~~~~~d~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 319 AMEAQACGTPVVAARVGGLP-----VAVA-DGETGLLVDGHDPADWADALARLLDDP 369 (405)
T ss_pred HHHHHHcCCCEEEecCCCcH-----hhhc-cCCceEECCCCCHHHHHHHHHHHHhCH
Confidence 99999999999998654222 2222 24455554 48899999998888775
No 13
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.70 E-value=2.5e-16 Score=125.57 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=90.5
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC----CCCchHHHHHHhcCCcE
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL----CNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~----~~~g~~~lEAla~G~Pv 85 (130)
.|+.+|+++|+ |+.++.++++++++|++ +.+.|.|+++.+++..+|+.||+++.+++ ++.+++++|||+||+||
T Consensus 267 ~~~i~l~ivG~-G~~~~~l~~~~~~~~l~-~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PV 344 (415)
T cd03816 267 LPKLLCIITGK-GPLKEKYLERIKELKLK-KVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPV 344 (415)
T ss_pred CCCEEEEEEec-CccHHHHHHHHHHcCCC-cEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCE
Confidence 48899999996 68889999999999996 66666789999999999999999984322 34699999999999999
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccC
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
|+++.... ..++. .|..+++..|.+++.+...+|++|
T Consensus 345 I~s~~~~~-----~eiv~-~~~~G~lv~d~~~la~~i~~ll~~ 381 (415)
T cd03816 345 CALDFKCI-----DELVK-HGENGLVFGDSEELAEQLIDLLSN 381 (415)
T ss_pred EEeCCCCH-----HHHhc-CCCCEEEECCHHHHHHHHHHHHhc
Confidence 99865422 23332 366677778999999999999988
No 14
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.69 E-value=3.4e-16 Score=123.47 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=91.7
Q ss_pred hHHHHHhhCCCcEEEEeecCccc---------HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC--CC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVG---------EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--CN 70 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~---------~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--~~ 70 (130)
+|.++.++.|+.+|+++|++ +. .+.+++++++++ ++|+|+|+++.+++..+|+.||+++.|+. ++
T Consensus 214 A~~~l~~~~p~~~lvivG~g-~~~~~~~~~~~~~~l~~~~~~l~---~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~ 289 (380)
T PRK15484 214 AFEKLATAHSNLKLVVVGDP-TASSKGEKAAYQKKVLEAAKRIG---DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEA 289 (380)
T ss_pred HHHHHHHhCCCeEEEEEeCC-ccccccchhHHHHHHHHHHHhcC---CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccc
Confidence 67888888999999999963 31 234555555554 68999999999999999999999998874 56
Q ss_pred CchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCc-e--ecCHHHHHHHHHHhccCCC
Q psy15363 71 GHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPEL-I--ARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 71 ~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~-v--a~~~~~y~~~a~~l~~d~e 130 (130)
+|++++|||+||+|||+++...... ++. .|..++ + ..|.+++.+...++++|++
T Consensus 290 f~~~~lEAma~G~PVI~s~~gg~~E-----iv~-~~~~G~~l~~~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 290 FCMVAVEAMAAGKPVLASTKGGITE-----FVL-EGITGYHLAEPMTSDSIISDINRTLADPE 346 (380)
T ss_pred cccHHHHHHHcCCCEEEeCCCCcHh-----hcc-cCCceEEEeCCCCHHHHHHHHHHHHcCHH
Confidence 7999999999999999986543322 222 255565 4 2588999999999998863
No 15
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.69 E-value=7.7e-16 Score=120.08 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=91.6
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC--HHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEEe
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--KEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~--~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~ 87 (130)
++.+|+++|+ |+.++.+++.++++++. ++|.|+|.++ .+++..+|..+|+++.|+. +++|++++|||+||+|||+
T Consensus 209 ~~~~l~ivG~-g~~~~~l~~~~~~~~l~-~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~ 286 (359)
T PRK09922 209 GEWQLHIIGD-GSDFEKCKAYSRELGIE-QRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCIS 286 (359)
T ss_pred CCeEEEEEeC-CccHHHHHHHHHHcCCC-CeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEE
Confidence 4789999996 67788999999999997 8999999874 4788889999999998876 4679999999999999999
Q ss_pred cC-CCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 88 LP-GETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 88 ~~-g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
++ ..... .++. .|..+++. .|.+++++...++++|++
T Consensus 287 s~~~~g~~-----eiv~-~~~~G~lv~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 287 SDCMSGPR-----DIIK-PGLNGELYTPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred eCCCCChH-----HHcc-CCCceEEECCCCHHHHHHHHHHHHhCcc
Confidence 87 43222 2332 35666553 689999999999999874
No 16
>PLN02949 transferase, transferring glycosyl groups
Probab=99.68 E-value=3.2e-16 Score=127.09 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=94.8
Q ss_pred hHHHHHhh----CCCcEEEEeecCcc-----cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC-CCCC
Q psy15363 2 SDIFVLKA----VPNSILWLLKFPAV-----GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNG 71 (130)
Q Consensus 2 ~w~~il~~----~P~a~l~i~g~~~~-----~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~~ 71 (130)
+|+++.++ .|+.+|+|+|++.. ..+.++++++++|++ ++|.|+|.++.+++..+|+.||+++.|+ .+++
T Consensus 289 A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~-~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~F 367 (463)
T PLN02949 289 AFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLD-GDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHF 367 (463)
T ss_pred HHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCC-CcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCC
Confidence 56666553 47899999996311 125788999999997 9999999999999999999999999876 5778
Q ss_pred chHHHHHHhcCCcEEecCCCchhhhhHHHHHHh--cCCCCceecCHHHHHHHHHHhccC
Q psy15363 72 HTTSMDVLWTGTPVVTLPGETLASRVAASQLAT--LGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 72 g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~--~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
|++++|||+||+|||+.+...... .++.. .|..++.++|.++|.+...++++|
T Consensus 368 GivvlEAMA~G~PVIa~~~gGp~~----eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 368 GISVVEYMAAGAVPIAHNSAGPKM----DIVLDEDGQQTGFLATTVEEYADAILEVLRM 422 (463)
T ss_pred ChHHHHHHHcCCcEEEeCCCCCcc----eeeecCCCCcccccCCCHHHHHHHHHHHHhC
Confidence 999999999999999986432110 11111 145677788999999999998874
No 17
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.67 E-value=7e-16 Score=116.68 Aligned_cols=121 Identities=20% Similarity=0.141 Sum_probs=94.9
Q ss_pred hHHHHHhhCCCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAl 79 (130)
+|.++.++.|+.+++++|.+.. ....++..+++.++. ++|.|+|+++.+++..+|+.||+++.|+. +++|++++|||
T Consensus 224 a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eam 302 (375)
T cd03821 224 AFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLE-DRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEAL 302 (375)
T ss_pred HHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCcc-ceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHH
Confidence 4667777789999999996432 344556666888997 99999999999999999999999988875 67899999999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
+||+|||+.+...... ++.. +..-++..+.+++++...++++|+
T Consensus 303 a~G~PvI~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 303 ACGTPVVTTDKVPWQE-----LIEY-GCGWVVDDDVDALAAALRRALELP 346 (375)
T ss_pred hcCCCEEEcCCCCHHH-----Hhhc-CceEEeCCChHHHHHHHHHHHhCH
Confidence 9999999987654433 2222 333345566699999999998875
No 18
>PLN02275 transferase, transferring glycosyl groups
Probab=99.67 E-value=7.8e-16 Score=120.99 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=86.6
Q ss_pred hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEec-CCCHHHHHHhhccccEEEcCC--C--CCCchHHHHHHhcCC
Q psy15363 9 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQLADVCLDTP--L--CNGHTTSMDVLWTGT 83 (130)
Q Consensus 9 ~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g-~~~~~~~~~~~~~~Dv~l~~~--~--~~~g~~~lEAla~G~ 83 (130)
+.|+.+|+++|+ |+.++.++++++++|++ + ++|.+ +++++++..+|+.||+|+.++ . ++.|++++|||+||+
T Consensus 258 ~~~~i~l~ivG~-G~~~~~l~~~~~~~~l~-~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~ 334 (371)
T PLN02275 258 LYPRLLFIITGK-GPQKAMYEEKISRLNLR-H-VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGL 334 (371)
T ss_pred cCCCeEEEEEeC-CCCHHHHHHHHHHcCCC-c-eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCC
Confidence 468999999996 68899999999999996 5 77755 699999999999999998542 2 457999999999999
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
|||+...... ..++. .|..+++.++.+++.+...+|+
T Consensus 335 PVVa~~~gg~-----~eiv~-~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 335 PVCAVSYSCI-----GELVK-DGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred CEEEecCCCh-----HHHcc-CCCCeEEECCHHHHHHHHHHhC
Confidence 9999864322 23333 3667777788888888777663
No 19
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.67 E-value=4.8e-16 Score=127.07 Aligned_cols=116 Identities=8% Similarity=-0.032 Sum_probs=91.3
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+|.++.++.|+++|.++|. |+.++.++++++++++. ++|.|.|+.+ +..+|+.+|+|+.|+. +++|++++|||+
T Consensus 340 A~~~l~~~~p~~~l~i~G~-G~~~~~l~~~i~~~~l~-~~V~f~G~~~---~~~~~~~adv~v~pS~~Egfgl~~lEAma 414 (500)
T TIGR02918 340 AVVKAKKSVPELTFDIYGE-GGEKQKLQKIINENQAQ-DYIHLKGHRN---LSEVYKDYELYLSASTSEGFGLTLMEAVG 414 (500)
T ss_pred HHHHHHhhCCCeEEEEEEC-chhHHHHHHHHHHcCCC-CeEEEcCCCC---HHHHHHhCCEEEEcCccccccHHHHHHHH
Confidence 6788888999999999996 67778999999999997 9999999874 4567889999998874 678999999999
Q ss_pred cCCcEEecCCC-chhhhhHHHHHHhcCCCCceec------C----HHHHHHHHHHhccC
Q psy15363 81 TGTPVVTLPGE-TLASRVAASQLATLGCPELIAR------T----HKEYQDIAIRLGTD 128 (130)
Q Consensus 81 ~G~PvV~~~g~-~~~~r~~~~~l~~~g~~~~va~------~----~~~y~~~a~~l~~d 128 (130)
||+|||+++-. .. ..++ ..|.++++.+ | .+++++...+|+++
T Consensus 415 ~G~PVI~~dv~~G~-----~eiI-~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~ 467 (500)
T TIGR02918 415 SGLGMIGFDVNYGN-----PTFI-EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNS 467 (500)
T ss_pred hCCCEEEecCCCCC-----HHHc-cCCCCEEEEeCCccccchhHHHHHHHHHHHHHhCh
Confidence 99999998632 11 1222 2377776654 2 67788888777743
No 20
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.67 E-value=7.4e-16 Score=116.73 Aligned_cols=121 Identities=21% Similarity=0.262 Sum_probs=96.2
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+|.++.++.|+.+++++|. ++..+.+++.++++++. ++|.|.|.++.+++..+|+.||+++.|+. +++|++++|||+
T Consensus 223 ~~~~~~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~ 300 (374)
T cd03817 223 AFARLLKEEPDVKLVIVGD-GPEREELEELARELGLA-DRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMA 300 (374)
T ss_pred HHHHHHHhCCCeEEEEEeC-CchHHHHHHHHHHcCCC-CcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHH
Confidence 4667777779999999996 57778889999999987 99999999999999999999999998875 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceecC-HHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIART-HKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~-~~~y~~~a~~l~~d~e 130 (130)
||+|||+.+.......+ . .|-.+++.++ .+++++...++.+|++
T Consensus 301 ~g~PvI~~~~~~~~~~i-----~-~~~~g~~~~~~~~~~~~~i~~l~~~~~ 345 (374)
T cd03817 301 AGLPVVAVDAPGLPDLV-----A-DGENGFLFPPGDEALAEALLRLLQDPE 345 (374)
T ss_pred cCCcEEEeCCCChhhhe-----e-cCceeEEeCCCCHHHHHHHHHHHhChH
Confidence 99999998765433222 1 2344555433 3388888888888764
No 21
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.67 E-value=1e-15 Score=119.51 Aligned_cols=121 Identities=21% Similarity=0.161 Sum_probs=91.6
Q ss_pred hHHHHHhhCCCcEEEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCC--CHHHHHHhhccccEEEcCCC-CCCchH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV----GEANIQATAQALGLDQHRILFSNVA--AKEEHVRRGQLADVCLDTPL-CNGHTT 74 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~--~~~~~~~~~~~~Dv~l~~~~-~~~g~~ 74 (130)
+|+++.++.|+.+|+++|++.. ..+.++++.++.++. ++|.|+|.. +.+++..+|+.+|+|+.|+. +++|++
T Consensus 211 a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~ 289 (372)
T cd03792 211 AYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGD-PDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLT 289 (372)
T ss_pred HHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCC-CCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHH
Confidence 4667777779999999996422 122345555567886 899999987 78889999999999998875 567999
Q ss_pred HHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 75 SMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 75 ~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
++|||+||+|||+.+...... ++ ..|..+++.++.++......++++|+
T Consensus 290 ~lEA~a~G~Pvv~s~~~~~~~-----~i-~~~~~g~~~~~~~~~a~~i~~ll~~~ 338 (372)
T cd03792 290 VTEALWKGKPVIAGPVGGIPL-----QI-EDGETGFLVDTVEEAAVRILYLLRDP 338 (372)
T ss_pred HHHHHHcCCCEEEcCCCCchh-----hc-ccCCceEEeCCcHHHHHHHHHHHcCH
Confidence 999999999999986543322 22 23666777788888888777887775
No 22
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.66 E-value=6.9e-16 Score=124.48 Aligned_cols=117 Identities=12% Similarity=0.100 Sum_probs=92.9
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~ 81 (130)
+.+++++.|+.+|+|+|+ |+.++.+++++++ .+|+|+|+++.+++..+|+.+|+|+.|+. +++|++++|||+|
T Consensus 281 li~a~~~~~~~~l~ivG~-G~~~~~l~~~~~~-----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~ 354 (465)
T PLN02871 281 LKRVMERLPGARLAFVGD-GPYREELEKMFAG-----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMAS 354 (465)
T ss_pred HHHHHHhCCCcEEEEEeC-ChHHHHHHHHhcc-----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHc
Confidence 456778889999999996 6777778777653 57999999999999999999999998875 5679999999999
Q ss_pred CCcEEecCCCchhhhhHHHHHHh--cCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 82 GTPVVTLPGETLASRVAASQLAT--LGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~--~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
|+|||+.+.... ..++.. .|-.+++. .|.+++.+...+|++|++
T Consensus 355 G~PVI~s~~gg~-----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 355 GVPVVAARAGGI-----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPE 402 (465)
T ss_pred CCCEEEcCCCCc-----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 999999865422 223332 25556654 489999999999988763
No 23
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.66 E-value=7.4e-16 Score=128.91 Aligned_cols=115 Identities=12% Similarity=-0.033 Sum_probs=91.7
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+|+++.++.|+.+|+|+|+ |+.++.++++++++|+ +|.|+|..+. ...+|+.+|||+.|+. +++|++++||||
T Consensus 567 Ala~L~~~~pnvrLvIVGD-GP~reeLe~la~eLgL---~V~FLG~~dd--~~~lyasaDVFVlPS~sEgFGlVlLEAMA 640 (794)
T PLN02501 567 LLAKHKNELDGFNLDVFGN-GEDAHEVQRAAKRLDL---NLNFLKGRDH--ADDSLHGYKVFINPSISDVLCTATAEALA 640 (794)
T ss_pred HHHHHHhhCCCeEEEEEcC-CccHHHHHHHHHHcCC---EEEecCCCCC--HHHHHHhCCEEEECCCcccchHHHHHHHH
Confidence 4667777889999999996 6888999999999887 3899998753 3367899999998875 678999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
||+|||+.+.... .++. .|.+.++..|.++|++.+.+++.|+
T Consensus 641 ~GlPVVATd~pG~------e~V~-~g~nGll~~D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 641 MGKFVVCADHPSN------EFFR-SFPNCLTYKTSEDFVAKVKEALANE 682 (794)
T ss_pred cCCCEEEecCCCC------ceEe-ecCCeEecCCHHHHHHHHHHHHhCc
Confidence 9999999865421 1111 1445566789999999999998876
No 24
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.65 E-value=8e-16 Score=119.69 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=92.7
Q ss_pred hHHHHHhhCC----CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHH
Q psy15363 2 SDIFVLKAVP----NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSM 76 (130)
Q Consensus 2 ~w~~il~~~P----~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~l 76 (130)
+|.+++++.| +.+|+++|. |+.++.+++.++++|+. +++.|.|.. +++..+|+.+|+++.|+. +++|++++
T Consensus 215 a~~~l~~~~~~~~~~~~l~i~G~-g~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~adi~v~pS~~Eg~~~~~l 290 (374)
T TIGR03088 215 AFALLVRQLPEGAERLRLVIVGD-GPARGACEQMVRAAGLA-HLVWLPGER--DDVPALMQALDLFVLPSLAEGISNTIL 290 (374)
T ss_pred HHHHHHHhCcccccceEEEEecC-CchHHHHHHHHHHcCCc-ceEEEcCCc--CCHHHHHHhcCEEEeccccccCchHHH
Confidence 4666777665 689999996 67778899999999997 899999964 678899999999998775 57799999
Q ss_pred HHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 77 DVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 77 EAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
|||+||+|||+++...... ++. .|..+++. .|.+++++...++.+|+
T Consensus 291 EAma~G~Pvv~s~~~g~~e-----~i~-~~~~g~~~~~~d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 291 EAMASGLPVIATAVGGNPE-----LVQ-HGVTGALVPPGDAVALARALQPYVSDP 339 (374)
T ss_pred HHHHcCCCEEEcCCCCcHH-----Hhc-CCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 9999999999986442222 222 24455544 57899999999988775
No 25
>KOG1111|consensus
Probab=99.65 E-value=4.1e-16 Score=121.34 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=79.7
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC-CCCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla 80 (130)
+-+++.++.|+++++++|+ ||.+..+++..+++-+. +||.|+|.+++++..+.|..-||||.|+ .+.+|++++||++
T Consensus 216 iIp~vc~~~p~vrfii~GD-GPk~i~lee~lEk~~l~-~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaS 293 (426)
T KOG1111|consen 216 IIPSVCDKHPEVRFIIIGD-GPKRIDLEEMLEKLFLQ-DRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAAS 293 (426)
T ss_pred HHHHHHhcCCCeeEEEecC-CcccchHHHHHHHhhcc-CceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHh
Confidence 4578999999999999997 68888899999999997 9999999999999999999999999998 5789999999999
Q ss_pred cCCcEEecC
Q psy15363 81 TGTPVVTLP 89 (130)
Q Consensus 81 ~G~PvV~~~ 89 (130)
||+|||++.
T Consensus 294 cGL~VVsTr 302 (426)
T KOG1111|consen 294 CGLPVVSTR 302 (426)
T ss_pred CCCEEEEee
Confidence 999999875
No 26
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.65 E-value=1.2e-15 Score=125.34 Aligned_cols=102 Identities=21% Similarity=0.172 Sum_probs=82.6
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla 80 (130)
++++++++.|+.+|+++|+ |+.++.++++++++|+. ++|+|+|+. ++...+|+.+|+|+.|+.+ ++|++++|||+
T Consensus 419 A~a~llk~~pdirLvIVGd-G~~~eeLk~la~elgL~-d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA 494 (578)
T PRK15490 419 FAARYLQHHPATRFVLVGD-GDLRAEAQKRAEQLGIL-ERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQM 494 (578)
T ss_pred HHHHHHhHCCCeEEEEEeC-chhHHHHHHHHHHcCCC-CcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHH
Confidence 4677888899999999996 67888999999999997 999999985 6788899999999988754 57999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceec
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIAR 113 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~ 113 (130)
||+|||+++...... ++. .|.++++.+
T Consensus 495 ~GlPVVATdvGG~~E-----iV~-dG~nG~LVp 521 (578)
T PRK15490 495 VGVPVISTPAGGSAE-----CFI-EGVSGFILD 521 (578)
T ss_pred hCCCEEEeCCCCcHH-----Hcc-cCCcEEEEC
Confidence 999999986542222 221 366666643
No 27
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.65 E-value=1.2e-15 Score=118.45 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=95.6
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
++.++.++.|+++|.++|. ++....+++..+++++. ++|.|.|.. +++..+|+.||+++.|+. +++|++++|||+
T Consensus 225 a~~~l~~~~~~~~l~i~G~-g~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma 300 (372)
T cd04949 225 AFAKVVKQVPDATLDIYGY-GDEEEKLKELIEELGLE-DYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGLSLMEALS 300 (372)
T ss_pred HHHHHHHhCCCcEEEEEEe-CchHHHHHHHHHHcCCc-ceEEEcCCC--CCHHHHHhhhhEEEecccccccChHHHHHHh
Confidence 5778888899999999996 56677788888999997 999999954 568889999999999986 467999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d~ 129 (130)
||+|||+.+.... ...++ ..|.++++.+ |.+++++...++++|+
T Consensus 301 ~G~PvI~~~~~~g----~~~~v-~~~~~G~lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 301 HGLPVISYDVNYG----PSEII-EDGENGYLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred CCCCEEEecCCCC----cHHHc-ccCCCceEeCCCcHHHHHHHHHHHHcCH
Confidence 9999999863211 11222 2366677766 8999999999999886
No 28
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.64 E-value=2.9e-15 Score=114.25 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=96.4
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-------CCCchH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-------CNGHTT 74 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-------~~~g~~ 74 (130)
++.++.++.|+.++.++|. ++..+.+++.+++.++. ++|+|.|.++.+++..+|+.+|+++.|+. +++|++
T Consensus 200 ~~~~l~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~ 277 (355)
T cd03799 200 ALALLKDRGIDFRLDIVGD-GPLRDELEALIAELGLE-DRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVV 277 (355)
T ss_pred HHHHHhhcCCCeEEEEEEC-CccHHHHHHHHHHcCCC-CeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHH
Confidence 3455556668999999996 57778899999999986 89999999999999999999999998874 567999
Q ss_pred HHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 75 SMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 75 ~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
++|||+||+|||+.+...... ++. .+..+++. .|.+++++...++++|++
T Consensus 278 ~~Ea~a~G~Pvi~~~~~~~~~-----~i~-~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 278 LMEAMAMGLPVISTDVSGIPE-----LVE-DGETGLLVPPGDPEALADAIERLLDDPE 329 (355)
T ss_pred HHHHHHcCCCEEecCCCCcch-----hhh-CCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 999999999999986543322 222 23345544 378999999999888763
No 29
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.64 E-value=1.5e-15 Score=128.08 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=89.3
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
++++++++.|+.+|+|+|+ |+.++.++++++++|+. ++|+|+|+.+ +...+|+.+|+|+.|+. +++|++++|||+
T Consensus 538 A~a~l~~~~p~~~LvIvG~-G~~~~~L~~l~~~lgL~-~~V~flG~~~--dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA 613 (694)
T PRK15179 538 AAQRFAASHPKVRFIMVGG-GPLLESVREFAQRLGMG-ERILFTGLSR--RVGYWLTQFNAFLLLSRFEGLPNVLIEAQF 613 (694)
T ss_pred HHHHHHHHCcCeEEEEEcc-CcchHHHHHHHHHcCCC-CcEEEcCCcc--hHHHHHHhcCEEEeccccccchHHHHHHHH
Confidence 5677888899999999996 67888999999999998 9999999974 67889999999998875 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--C--HHHHHHHHHHhcc
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIAR--T--HKEYQDIAIRLGT 127 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~--~~~y~~~a~~l~~ 127 (130)
||+|||+++..... .++. .|.++++.+ | .+++.+...++++
T Consensus 614 ~G~PVVat~~gG~~-----EiV~-dg~~GlLv~~~d~~~~~La~aL~~ll~ 658 (694)
T PRK15179 614 SGVPVVTTLAGGAG-----EAVQ-EGVTGLTLPADTVTAPDVAEALARIHD 658 (694)
T ss_pred cCCeEEEECCCChH-----HHcc-CCCCEEEeCCCCCChHHHHHHHHHHHh
Confidence 99999998644222 2222 366676653 3 2355555544443
No 30
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.62 E-value=9.2e-15 Score=111.58 Aligned_cols=120 Identities=23% Similarity=0.197 Sum_probs=95.0
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC---CCCchHHHHHHh
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL---CNGHTTSMDVLW 80 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~---~~~g~~~lEAla 80 (130)
.+++++.++.+++++|. ++..+.+++.+++.+.. ++|.|+|+++.+++..+|+.||+++.|+. +++|++++|||+
T Consensus 210 i~a~~~l~~~~l~i~G~-g~~~~~~~~~~~~~~~~-~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~ 287 (357)
T cd03795 210 LEAAAALPDAPLVIVGE-GPLEAELEALAAALGLL-DRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMA 287 (357)
T ss_pred HHHHHhccCcEEEEEeC-ChhHHHHHHHHHhcCCc-ceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHH
Confidence 34555666899999996 57777888888888987 89999999999999999999999998863 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
||+|||+.+...... .+...|-.+++. .|.+++++...++++|++
T Consensus 288 ~g~Pvi~~~~~~~~~-----~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~ 334 (357)
T cd03795 288 FGKPVISTEIGTGGS-----YVNLHGVTGLVVPPGDPAALAEAIRRLLEDPE 334 (357)
T ss_pred cCCCEEecCCCCchh-----HHhhCCCceEEeCCCCHHHHHHHHHHHHHCHH
Confidence 999999986543322 222224455554 579999999999988863
No 31
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.62 E-value=4.4e-15 Score=111.08 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=94.1
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+|.++.+..|+.+|+++|. ++.++.+++.+++.++. ++|.|.|. .+++..+|+.||+++.|+. +++|++++|||+
T Consensus 199 ~~~~l~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a 274 (348)
T cd03820 199 AWAKIAKKHPDWKLRIVGD-GPEREALEALIKELGLE-DRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMA 274 (348)
T ss_pred HHHHHHhcCCCeEEEEEeC-CCCHHHHHHHHHHcCCC-CeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHH
Confidence 5667777789999999996 57778888889999997 89999998 5789999999999998875 467999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
||+|||+.+...... .+...+..+++. .|.+++++...++++|++
T Consensus 275 ~G~Pvi~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 275 FGLPVISFDCPTGPS-----EIIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred cCCCEEEecCCCchH-----hhhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 999999986432111 111223345554 366999999999988874
No 32
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.62 E-value=6.3e-15 Score=114.34 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=94.2
Q ss_pred hHHHHHhhCCCcEEEEeecCccc-----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTS 75 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~-----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~ 75 (130)
++.++.++.|+.+|+++|++... .+.+++..+++++. +++.|+|.++.+++..+|+.+|+++.|+. ++.|+++
T Consensus 241 a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l 319 (398)
T cd03800 241 AYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVI-DRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTA 319 (398)
T ss_pred HHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCC-ceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHH
Confidence 45666677889999999963221 24567788889987 89999999999999999999999998874 5679999
Q ss_pred HHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 76 MDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 76 lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
+|||+||+|||+.+...... ++.. +-.+++. .|.+++++...++++|+
T Consensus 320 ~Ea~a~G~Pvi~s~~~~~~e-----~i~~-~~~g~~~~~~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 320 LEAMACGLPVVATAVGGPRD-----IVVD-GVTGLLVDPRDPEALAAALRRLLTDP 369 (398)
T ss_pred HHHHhcCCCEEECCCCCHHH-----HccC-CCCeEEeCCCCHHHHHHHHHHHHhCH
Confidence 99999999999987543322 2322 3345555 47899999999998875
No 33
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.62 E-value=5.2e-15 Score=117.73 Aligned_cols=121 Identities=14% Similarity=0.064 Sum_probs=93.3
Q ss_pred hHHHHHhhCCC--cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEEEcCCC-CCCchHHH
Q psy15363 2 SDIFVLKAVPN--SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVCLDTPL-CNGHTTSM 76 (130)
Q Consensus 2 ~w~~il~~~P~--a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~l~~~~-~~~g~~~l 76 (130)
++.++.++.|+ .+++++|+ |+..+.+++++++++.. ++|.|+|+++.+++..+|+. +|+|+.|+. ++.|++++
T Consensus 251 a~~~l~~~~p~~~l~~~iiG~-g~~~~~l~~~~~~~~~~-~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~ll 328 (407)
T cd04946 251 ALAALAKARPSIKIKWTHIGG-GPLEDTLKELAESKPEN-ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIM 328 (407)
T ss_pred HHHHHHHhCCCceEEEEEEeC-chHHHHHHHHHHhcCCC-ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHH
Confidence 46677777774 55677885 67778899999888886 89999999999999999975 789987775 56799999
Q ss_pred HHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee---cCHHHHHHHHHHhccCCC
Q psy15363 77 DVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 77 EAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va---~~~~~y~~~a~~l~~d~e 130 (130)
|||+||+|||+++..... .++. .|.++++. +|.+++++...++++|++
T Consensus 329 EAma~G~PVIas~vgg~~-----e~i~-~~~~G~l~~~~~~~~~la~~I~~ll~~~~ 379 (407)
T cd04946 329 EAMSFGIPVIATNVGGTP-----EIVD-NGGNGLLLSKDPTPNELVSSLSKFIDNEE 379 (407)
T ss_pred HHHHcCCCEEeCCCCCcH-----HHhc-CCCcEEEeCCCCCHHHHHHHHHHHHhCHH
Confidence 999999999998644322 2332 24345443 368999999999988763
No 34
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.62 E-value=2.1e-15 Score=119.00 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=84.3
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC--CCCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--CNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--~~~g~~~lEAl 79 (130)
+|+++.++.|+.+|+|+|+ ++. +. +++++.. ++|+|+|+++ ++..+|+.+|+++.|+. ++.+++++|||
T Consensus 249 ~~~~l~~~~p~~~l~ivG~-g~~-~~----~~~l~~~-~~V~~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAm 319 (397)
T TIGR03087 249 VFPAVRARRPAAEFYIVGA-KPS-PA----VRALAAL-PGVTVTGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAM 319 (397)
T ss_pred HHHHHHHHCCCcEEEEECC-CCh-HH----HHHhccC-CCeEEeeecC--CHHHHHHhCCEEEecccccCCcccHHHHHH
Confidence 4677788899999999996 443 23 3344544 7899999997 57789999999998875 45688999999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
+||+|||+++... ..+....|..-+++.|.+++++...+|++|++
T Consensus 320 a~G~PVV~t~~~~------~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 320 AMAKPVVASPEAA------EGIDALPGAELLVAADPADFAAAILALLANPA 364 (397)
T ss_pred HcCCCEEecCccc------ccccccCCcceEeCCCHHHHHHHHHHHHcCHH
Confidence 9999999986320 11111123333566899999999999998863
No 35
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.62 E-value=6e-15 Score=113.82 Aligned_cols=117 Identities=18% Similarity=0.157 Sum_probs=91.1
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+|.++.++ ++.+++++|. ++..+.+++.+++.+++ ++|.|.|.. +++..+|+.+|+++.|+. +++|++++|||+
T Consensus 218 a~~~l~~~-~~~~l~i~G~-g~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma 292 (371)
T cd04962 218 IFAKVRKE-VPARLLLVGD-GPERSPAERLARELGLQ-DDVLFLGKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMA 292 (371)
T ss_pred HHHHHHhc-CCceEEEEcC-CcCHHHHHHHHHHcCCC-ceEEEecCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHH
Confidence 35555444 5689999996 67788899999999997 899999977 468889999999998885 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d~ 129 (130)
||+|||+++...... ++. .|..+++.+ |.+++++...++++|+
T Consensus 293 ~g~PvI~s~~~~~~e-----~i~-~~~~G~~~~~~~~~~l~~~i~~l~~~~ 337 (371)
T cd04962 293 CGVPVVASNAGGIPE-----VVK-HGETGFLVDVGDVEAMAEYALSLLEDD 337 (371)
T ss_pred cCCCEEEeCCCCchh-----hhc-CCCceEEcCCCCHHHHHHHHHHHHhCH
Confidence 999999986543322 221 244565553 7889999999988875
No 36
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.62 E-value=5.4e-15 Score=114.17 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=85.9
Q ss_pred HHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCc
Q psy15363 5 FVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTP 84 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~P 84 (130)
+.+++.| .+|+++|+ ++..+.+++ +.. ++|+|+|+++.+++..+|+.||+++.|+.+++|++++|||+||+|
T Consensus 215 ~a~~~~~-~~l~ivG~-g~~~~~l~~-----~~~-~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~P 286 (351)
T cd03804 215 EAFNKLG-KRLVVIGD-GPELDRLRA-----KAG-PNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTP 286 (351)
T ss_pred HHHHHCC-CcEEEEEC-ChhHHHHHh-----hcC-CCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCC
Confidence 4556677 89999996 565555554 444 899999999999999999999999988777789999999999999
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
||+.+......- +. .|..+++. .|.+++++...++++|+
T Consensus 287 vi~~~~~~~~e~-----i~-~~~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 287 VIAYGKGGALET-----VI-DGVTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred EEEeCCCCCcce-----ee-CCCCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 999865432221 11 13345443 57889999999999887
No 37
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.62 E-value=2.4e-15 Score=121.83 Aligned_cols=120 Identities=17% Similarity=0.217 Sum_probs=93.1
Q ss_pred hHHHHHhhCCCcEEEEeecCcc---cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMD 77 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~---~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lE 77 (130)
++.++.++.|+.+++++|.+.. ..+.++++++++|+. ++|+|+| .+++..+|+.+|+++.|+. +++|++++|
T Consensus 314 a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~-~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlE 389 (475)
T cd03813 314 AAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLE-DNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILE 389 (475)
T ss_pred HHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCC-CeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHH
Confidence 5667778899999999996321 246788899999997 9999999 4567788999999988774 678999999
Q ss_pred HHhcCCcEEecCCCchhhhhHHHHHHh-----cCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 78 VLWTGTPVVTLPGETLASRVAASQLAT-----LGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 78 Ala~G~PvV~~~g~~~~~r~~~~~l~~-----~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
||+||+|||+++...... ++.. .|..+++. .|.+++.+...++++|++
T Consensus 390 Ama~G~PVVatd~g~~~e-----lv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 390 AMAAGIPVVATDVGSCRE-----LIEGADDEALGPAGEVVPPADPEALARAILRLLKDPE 444 (475)
T ss_pred HHHcCCCEEECCCCChHH-----HhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHH
Confidence 999999999986543322 3333 24455544 589999999999998863
No 38
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.61 E-value=7.7e-15 Score=109.87 Aligned_cols=121 Identities=21% Similarity=0.208 Sum_probs=96.5
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla 80 (130)
+|..+.++.|+.+|+++|. +...+.+++.+++.+.. ++|.|.|.++.+++..+|+.||+++.|+.. ++|++++|||+
T Consensus 220 ~~~~~~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~ 297 (374)
T cd03801 220 ALAKLRKEYPDVRLVIVGD-GPLREELEALAAELGLG-DRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMA 297 (374)
T ss_pred HHHHHhhhcCCeEEEEEeC-cHHHHHHHHHHHHhCCC-cceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHH
Confidence 4566777778999999995 57777888888888887 999999999999999999999999988764 67999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d~e 130 (130)
+|+|||+.+.......+ .. +-.+++.+ |.+++.+...++++|++
T Consensus 298 ~g~pvI~~~~~~~~~~~-----~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 298 AGLPVVASDVGGIPEVV-----ED-GETGLLVPPGDPEALAEAILRLLDDPE 343 (374)
T ss_pred cCCcEEEeCCCChhHHh-----cC-CcceEEeCCCCHHHHHHHHHHHHcChH
Confidence 99999998865443322 21 33444443 46899999999888763
No 39
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.60 E-value=3.6e-15 Score=104.56 Aligned_cols=119 Identities=14% Similarity=0.103 Sum_probs=92.4
Q ss_pred HHHHHhh-CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 3 DIFVLKA-VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 3 w~~il~~-~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+.++.++ .|+.+++++|. +.....++..++..++. ++++|.|.++.+++..+|+.+|+++.|+. +++|.+++|||+
T Consensus 37 ~~~l~~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~ 114 (172)
T PF00534_consen 37 FKKLKEKKNPNYKLVIVGD-GEYKKELKNLIEKLNLK-ENIIFLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMA 114 (172)
T ss_dssp HHHHHHHHHTTEEEEEESH-CCHHHHHHHHHHHTTCG-TTEEEEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHH
T ss_pred HHHHHhhcCCCeEEEEEcc-ccccccccccccccccc-ccccccccccccccccccccceeccccccccccccccccccc
Confidence 4445554 89999999995 46677889999999997 99999999999999999999999998875 578999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
||+|||+........- +. .+.++++. .+.+++++...++++|+
T Consensus 115 ~g~pvI~~~~~~~~e~-----~~-~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 115 CGCPVIASDIGGNNEI-----IN-DGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp TT-EEEEESSTHHHHH-----SG-TTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred cccceeeccccCCcee-----ec-cccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 9999999885533322 22 24456555 36699999999988765
No 40
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.60 E-value=1.3e-14 Score=110.40 Aligned_cols=120 Identities=21% Similarity=0.191 Sum_probs=90.7
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHH----HHHHHcCCCCCCEEEecC-CCHHHHHHhhccccEEEcCCC-C--CCch
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQ----ATAQALGLDQHRILFSNV-AAKEEHVRRGQLADVCLDTPL-C--NGHT 73 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~----~~~~~~g~~~~rv~f~g~-~~~~~~~~~~~~~Dv~l~~~~-~--~~g~ 73 (130)
+|.++.++.|+.+|+++|.+.......+ ++++++|+. ++|.|.|. ++.+++..+|+.+|+++.|+. + +.|.
T Consensus 206 a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~-~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~ 284 (366)
T cd03822 206 ALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLA-DRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSG 284 (366)
T ss_pred HHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCC-CcEEEecCcCCHHHHHHHHhhcCEEEecccccccccch
Confidence 4677777889999999996433222222 237888997 99999988 999999999999999998875 4 5689
Q ss_pred HHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 74 TSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 74 ~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
+++|||+||+|||+.+... .. .+.. +-.+++. .|.+++++...++.+|+
T Consensus 285 ~~~Ea~a~G~PvI~~~~~~-~~-----~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 285 VLAYAIGFGKPVISTPVGH-AE-----EVLD-GGTGLLVPPGDPAALAEAIRRLLADP 335 (366)
T ss_pred HHHHHHHcCCCEEecCCCC-hh-----eeee-CCCcEEEcCCCHHHHHHHHHHHHcCh
Confidence 9999999999999986542 11 1111 3344544 46899999999998875
No 41
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.60 E-value=1.1e-14 Score=115.34 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=88.5
Q ss_pred hhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCC-----CchHHHHHHhcC
Q psy15363 8 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN-----GHTTSMDVLWTG 82 (130)
Q Consensus 8 ~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~-----~g~~~lEAla~G 82 (130)
++.|+.+|+++|+ |+.++.++++++++|++ +|+|+|+++.+++..+|+.||+++.|+..+ .++.++|||+||
T Consensus 255 ~~~~~~~l~ivG~-g~~~~~l~~~~~~~~l~--~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G 331 (412)
T PRK10307 255 RDRPDLIFVICGQ-GGGKARLEKMAQCRGLP--NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASG 331 (412)
T ss_pred ccCCCeEEEEECC-ChhHHHHHHHHHHcCCC--ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcC
Confidence 4568999999996 67888899999999984 799999999999999999999998777533 356789999999
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
+|||+++.... ....++. + .+++. .|.+++.+...+|++|+
T Consensus 332 ~PVi~s~~~g~---~~~~~i~--~-~G~~~~~~d~~~la~~i~~l~~~~ 374 (412)
T PRK10307 332 RNVVATAEPGT---ELGQLVE--G-IGVCVEPESVEALVAAIAALARQA 374 (412)
T ss_pred CCEEEEeCCCc---hHHHHHh--C-CcEEeCCCCHHHHHHHHHHHHhCH
Confidence 99999853211 0112333 3 45443 58899999999998876
No 42
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.58 E-value=3.5e-14 Score=107.86 Aligned_cols=110 Identities=14% Similarity=0.013 Sum_probs=85.4
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcC-CCCCCEEEecCCCHHHHHHhhccccEEEcCCC--CCCchHHHHHHhcCCcEE
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALG-LDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--CNGHTTSMDVLWTGTPVV 86 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g-~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--~~~g~~~lEAla~G~PvV 86 (130)
.++.+|+++|. ++..+.+....++.. +. ++|.|+|+++.+++..+|+.+|+++.|+. +++|++++|||+||+|||
T Consensus 195 ~~~~~l~i~G~-~~~~~~~~~~~~~~~~~~-~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI 272 (335)
T cd03802 195 RAGIPLKLAGP-VSDPDYFYREIAPELLDG-PDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVI 272 (335)
T ss_pred hcCCeEEEEeC-CCCHHHHHHHHHHhcccC-CcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEE
Confidence 46799999996 566666666655554 54 89999999999999999999999998874 678999999999999999
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
+.+......-+ ..|.++++.++.+++++...++.+
T Consensus 273 ~~~~~~~~e~i------~~~~~g~l~~~~~~l~~~l~~l~~ 307 (335)
T cd03802 273 AFRRGAVPEVV------EDGVTGFLVDSVEELAAAVARADR 307 (335)
T ss_pred EeCCCCchhhe------eCCCcEEEeCCHHHHHHHHHHHhc
Confidence 98755333322 235567777778888888777654
No 43
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.57 E-value=4.9e-14 Score=106.04 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=96.4
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+|.++.++.|+.+++++|. ++..+.+++.+++.+.. ++|.+.|+++.+++..+|+.||+++.|+. +++|++++|||+
T Consensus 223 ~~~~~~~~~~~~~l~i~g~-~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~ 300 (377)
T cd03798 223 ALARLLKKRPDVHLVIVGD-GPLREALEALAAELGLE-DRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMA 300 (377)
T ss_pred HHHHHHhcCCCeEEEEEcC-CcchHHHHHHHHhcCCc-ceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHh
Confidence 4566666778999999996 56677888888888987 89999999999999999999999998875 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
+|+|||+.+...... ++.. +..+++. .|.+++++...++.+|++
T Consensus 301 ~G~pvI~~~~~~~~~-----~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 301 CGLPVVATDVGGIPE-----IITD-GENGLLVPPGDPEALAEAILRLLADPW 346 (377)
T ss_pred cCCCEEEecCCChHH-----HhcC-CcceeEECCCCHHHHHHHHHHHhcCcH
Confidence 999999987553322 2222 3334443 588999999999888763
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.56 E-value=3.2e-14 Score=107.94 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=86.8
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
++.++.++ |+.+|+++|. ++..+.++ +.. ++|.|.|.++.+++..+|+.||+++.|+. +++|++++|||+
T Consensus 218 ~~~~l~~~-~~~~l~i~G~-~~~~~~~~------~~~-~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a 288 (364)
T cd03814 218 ADLPLRRR-PPVRLVIVGD-GPARARLE------ARY-PNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMA 288 (364)
T ss_pred HHHHhhhc-CCceEEEEeC-CchHHHHh------ccC-CcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHH
Confidence 34555555 8899999996 56555544 343 89999999999999999999999998874 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
||+|||+.+.......+ .. +-.+++. .+.+++++...++.+|++
T Consensus 289 ~g~PvI~~~~~~~~~~i-----~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 289 SGLPVVAPDAGGPADIV-----TD-GENGLLVEPGDAEAFAAALAALLADPE 334 (364)
T ss_pred cCCCEEEcCCCCchhhh-----cC-CcceEEcCCCCHHHHHHHHHHHHcCHH
Confidence 99999999866443332 22 2344444 467779999999988864
No 45
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.56 E-value=2.5e-14 Score=114.72 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=75.5
Q ss_pred HHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----cEEEcCCC-CCCchHHHHHHhcCCcEEecCCCchhhhhHHHHH
Q psy15363 28 IQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----DVCLDTPL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQL 102 (130)
Q Consensus 28 l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----Dv~l~~~~-~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l 102 (130)
+++++++.++. ++|+|+|.++.+++..+|+.+ |+|+.|+. +++|++++|||+||+|||+++...... ++
T Consensus 306 ~~~~~~~~~l~-~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~e-----iv 379 (439)
T TIGR02472 306 VLLLIDRYDLY-GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRD-----II 379 (439)
T ss_pred HHHHHHHcCCC-ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHH-----Hh
Confidence 45567889997 999999999999999999877 99988875 567999999999999999987543322 22
Q ss_pred HhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 103 ATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 103 ~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
..|.++++. .|.+++.+...++++|+
T Consensus 380 -~~~~~G~lv~~~d~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 380 -ANCRNGLLVDVLDLEAIASALEDALSDS 407 (439)
T ss_pred -cCCCcEEEeCCCCHHHHHHHHHHHHhCH
Confidence 225556654 58899999888888875
No 46
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.56 E-value=5.7e-14 Score=107.33 Aligned_cols=115 Identities=11% Similarity=0.038 Sum_probs=90.1
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
++.++.++.|+.+|+++|+ ++..+.+++.++++++. ++|.|+|+. +++..+|+.||+++.|+. +++|++++|||+
T Consensus 209 a~~~l~~~~~~~~l~i~G~-g~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a 284 (360)
T cd04951 209 AFAKLLSDYLDIKLLIAGD-GPLRATLERLIKALGLS-NRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMA 284 (360)
T ss_pred HHHHHHhhCCCeEEEEEcC-CCcHHHHHHHHHhcCCC-CcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHH
Confidence 4566777789999999996 67778899999999987 899999976 567889999999998875 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCC--ceecCHHHHHHHHHHhccC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPE--LIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~--~va~~~~~y~~~a~~l~~d 128 (130)
+|+|||+.+...... +++. .+ +-..|.+++.+...+++++
T Consensus 285 ~G~PvI~~~~~~~~e-----~i~~---~g~~~~~~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 285 CELPVVATDAGGVRE-----VVGD---SGLIVPISDPEALANKIDEILKM 326 (360)
T ss_pred cCCCEEEecCCChhh-----EecC---CceEeCCCCHHHHHHHHHHHHhC
Confidence 999999986543322 2222 22 2237888999988888743
No 47
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.55 E-value=1.4e-14 Score=110.11 Aligned_cols=120 Identities=18% Similarity=0.107 Sum_probs=91.4
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
++.++.+..|+.+|+++|.++.......+..++.+.. ++|+|+|.++.+++..+|+.+|+++.|+. +++|.+++|||+
T Consensus 216 ~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a 294 (365)
T cd03809 216 AFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLG-DRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMA 294 (365)
T ss_pred HHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCC-CeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhc
Confidence 4566777777899999996444444444445777886 99999999999999999999999998875 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCC--ceecCHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPE--LIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~--~va~~~~~y~~~a~~l~~d~e 130 (130)
+|+|||+.+...+...+ +-.+ +...|.+++++...++++|++
T Consensus 295 ~G~pvI~~~~~~~~e~~--------~~~~~~~~~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 295 CGTPVIASNISSLPEVA--------GDAALYFDPLDPEALAAAIERLLEDPA 338 (365)
T ss_pred CCCcEEecCCCCcccee--------cCceeeeCCCCHHHHHHHHHHHhcCHH
Confidence 99999998765333322 1122 234678999999999888763
No 48
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.54 E-value=1.1e-13 Score=105.81 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=85.3
Q ss_pred hHHHHHhhCCCcEEEEeecCccc---HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC--CCCCchHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVG---EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP--LCNGHTTSM 76 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~---~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~--~~~~g~~~l 76 (130)
++.++.++.|+.+++++|.+... .+.+++.++++++. ++|.|+|+ .+++..+|+.+|+++.|+ ++++|++++
T Consensus 206 ~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~ 282 (355)
T cd03819 206 ALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQ-DRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAV 282 (355)
T ss_pred HHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCc-ceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHH
Confidence 45666666789999999964221 24456677888986 89999999 567889999999999887 356799999
Q ss_pred HHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhc
Q psy15363 77 DVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLG 126 (130)
Q Consensus 77 EAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~ 126 (130)
|||+||+|||+.+...... ++.. +..+++. .|.+++++....++
T Consensus 283 EA~a~G~PvI~~~~~~~~e-----~i~~-~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 283 EAQAMGRPVIASDHGGARE-----TVRP-GETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred HHHhcCCCEEEcCCCCcHH-----HHhC-CCceEEeCCCCHHHHHHHHHHHH
Confidence 9999999999987543333 2322 3345443 57888888775444
No 49
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.52 E-value=1.3e-13 Score=109.83 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=86.1
Q ss_pred hHHHHHhhCCCcEEEEeecCcccH-HHHHHHHHHcCCCC------------CCEEEecCCCHHHHHHhhccccEE-EcCC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGE-ANIQATAQALGLDQ------------HRILFSNVAAKEEHVRRGQLADVC-LDTP 67 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~-~~l~~~~~~~g~~~------------~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~ 67 (130)
+|.++.++.|+.+|+++|. ++.+ +.+++.++++|+.. .+|.+.+. ..++..+|+.||++ +.++
T Consensus 252 A~~~l~~~~~~~~liivG~-g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~--~~el~~~y~~aDi~~v~~S 328 (425)
T PRK05749 252 AHRALLKQFPNLLLILVPR-HPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT--MGELGLLYAIADIAFVGGS 328 (425)
T ss_pred HHHHHHHhCCCcEEEEcCC-ChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec--HHHHHHHHHhCCEEEECCC
Confidence 5777888899999999996 5665 78999999999841 13333332 36899999999995 5444
Q ss_pred -CCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 68 -LCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 68 -~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
..++|.+++|||+||+|||+.+...-..-. ...+...|. -+...|.+++.+...+|++|++
T Consensus 329 ~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~-~~~~~~~g~-~~~~~d~~~La~~l~~ll~~~~ 390 (425)
T PRK05749 329 LVKRGGHNPLEPAAFGVPVISGPHTFNFKEI-FERLLQAGA-AIQVEDAEDLAKAVTYLLTDPD 390 (425)
T ss_pred cCCCCCCCHHHHHHhCCCEEECCCccCHHHH-HHHHHHCCC-eEEECCHHHHHHHHHHHhcCHH
Confidence 356899999999999999986532111111 112222221 1224788999999999988864
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.52 E-value=1e-13 Score=104.07 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=87.7
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHH-HHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQAT-AQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~-~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAl 79 (130)
++.++.+..|+.+|+++|. +......+.. +.+.+.. ++|.|.|. .+++..+|+.||+++.|+. ++.|++++|||
T Consensus 209 ~~~~l~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~ 284 (359)
T cd03808 209 AARILKAKGPNVRLLLVGD-GDEENPAAILEIEKLGLE-GRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAM 284 (359)
T ss_pred HHHHHHhcCCCeEEEEEcC-CCcchhhHHHHHHhcCCc-ceEEEeec--cccHHHHHHhccEEEecCcccCcchHHHHHH
Confidence 3555666679999999996 4443333333 6666775 89999998 4678899999999998875 56799999999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
+||+|||+.+...... ++. .+..+++. +|.+++++...++.+|++
T Consensus 285 ~~G~Pvi~s~~~~~~~-----~i~-~~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 285 AMGRPVIATDVPGCRE-----AVI-DGVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred HcCCCEEEecCCCchh-----hhh-cCcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 9999999986553322 222 14445554 468999999998888763
No 51
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.52 E-value=9.1e-14 Score=120.68 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----cEEEcCCC-CCCchHHHHHHhcCCcEEecCCCchhhhhHHH
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----DVCLDTPL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAAS 100 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----Dv~l~~~~-~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~ 100 (130)
..++++++++++. ++|.|+|+++.+++..+|+.| |+|+.|+. +++|++++|||+||+|||+++......
T Consensus 535 ~~L~~li~~lgL~-g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~E----- 608 (1050)
T TIGR02468 535 TSVLKLIDKYDLY-GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVD----- 608 (1050)
T ss_pred HHHHHHHHHhCCC-CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHH-----
Confidence 4577889999997 999999999999999999988 69998875 678999999999999999986443322
Q ss_pred HHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 101 QLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 101 ~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
++ ..|.++++. .|.+++.+...++++|++
T Consensus 609 II-~~g~nGlLVdP~D~eaLA~AL~~LL~Dpe 639 (1050)
T TIGR02468 609 IH-RVLDNGLLVDPHDQQAIADALLKLVADKQ 639 (1050)
T ss_pred Hh-ccCCcEEEECCCCHHHHHHHHHHHhhCHH
Confidence 22 125667655 488999999999988863
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.52 E-value=1.8e-13 Score=103.51 Aligned_cols=109 Identities=18% Similarity=0.077 Sum_probs=82.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC--CCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--CNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--~~~g~~~lEAla~G~PvV~~ 88 (130)
|+.+|+++|. ++.....+... +.. ++|+|.|+++.+++..+|+.+|+++.|+. +++|++++|||+||+|||+.
T Consensus 219 ~~~~l~i~G~-~~~~~~~~~~~---~~~-~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~ 293 (359)
T cd03823 219 GDIELVIVGN-GLELEEESYEL---EGD-PRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIAS 293 (359)
T ss_pred cCcEEEEEcC-chhhhHHHHhh---cCC-CeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEEC
Confidence 7899999996 44433333222 554 89999999999999999999999998874 56899999999999999998
Q ss_pred CCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 89 PGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
+....... +. .+..+++. .|.+++++...++.+|++
T Consensus 294 ~~~~~~e~-----i~-~~~~g~~~~~~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 294 DIGGMAEL-----VR-DGVNGLLFPPGDAEDLAAALERLIDDPD 331 (359)
T ss_pred CCCCHHHH-----hc-CCCcEEEECCCCHHHHHHHHHHHHhChH
Confidence 76543332 22 23345444 457999999999988763
No 53
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.52 E-value=1.7e-13 Score=102.47 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=88.0
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+|.++.++.|+.+|+++|. ++..+.+++.++++++. ++|.|.|..+ ++..+|+.||+++.|+. ++.|++++|||+
T Consensus 210 ~~~~l~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~~~-~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~ 285 (353)
T cd03811 210 AFALLRKEGPDARLVILGD-GPLREELEALAKELGLA-DRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMA 285 (353)
T ss_pred HHHHhhhcCCCceEEEEcC-CccHHHHHHHHHhcCCC-ccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHH
Confidence 4566666678999999996 57777888899999987 8999999964 56788999999998876 467999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHH---HHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEY---QDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y---~~~a~~l~~d~ 129 (130)
+|+|||+.+...... ++. .+..+++. ++.+++ ++....+..|+
T Consensus 286 ~G~PvI~~~~~~~~e-----~i~-~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 286 LGTPVVATDCPGPRE-----ILE-DGENGLLVPVGDEAALAAAALALLDLLLDP 333 (353)
T ss_pred hCCCEEEcCCCChHH-----Hhc-CCCceEEECCCCHHHHHHHHHHHHhccCCh
Confidence 999999986553322 222 24455554 355666 55555555554
No 54
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.52 E-value=1.8e-13 Score=103.20 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=89.3
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHH-HcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQ-ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~-~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAl 79 (130)
++.++.++.|+.+|+++|. ++..+.+++... +.++. ++|.|.|.. +++..+|+.||+++.|+. +++|++++|||
T Consensus 214 a~~~l~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 289 (365)
T cd03807 214 AAALLLKKFPNARLLLVGD-GPDRANLELLALKELGLE-DKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAM 289 (365)
T ss_pred HHHHHHHhCCCeEEEEecC-CcchhHHHHHHHHhcCCC-ceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHH
Confidence 4566677789999999996 566666677666 88886 899999965 578889999999998875 46799999999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
+||+|||+.+...... ++.. .+++. .|.+++.+...++++|+
T Consensus 290 a~g~PvI~~~~~~~~e-----~~~~---~g~~~~~~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 290 ACGLPVVATDVGDNAE-----LVGD---TGFLVPPGDPEALAEAIEALLADP 333 (365)
T ss_pred hcCCCEEEcCCCChHH-----Hhhc---CCEEeCCCCHHHHHHHHHHHHhCh
Confidence 9999999986543322 2222 34333 57889999999888875
No 55
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.51 E-value=1e-13 Score=106.21 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=79.2
Q ss_pred CcEEEEeecCcccHHHHHHHHH-HcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC--CCCchHHHHHHhcCCcEEec
Q psy15363 12 NSILWLLKFPAVGEANIQATAQ-ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--CNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~-~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--~~~g~~~lEAla~G~PvV~~ 88 (130)
+.+|+++|+ ++..+.+++.++ +++.. ++|+|+|+++.+++..+|+.+|+++.|+. ++.|++++|||+||+|||++
T Consensus 221 ~~~l~ivG~-~~~~~~~~~~~~~~~~~~-~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s 298 (363)
T cd04955 221 GKKLVIVGN-ADHNTPYGKLLKEKAAAD-PRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLAS 298 (363)
T ss_pred CceEEEEcC-CCCcchHHHHHHHHhCCC-CcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEe
Confidence 799999996 444445555554 67776 89999999999999999999999987764 56799999999999999998
Q ss_pred CCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 89 PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
+......- + +-.+++.+..+.+.+...++++|+
T Consensus 299 ~~~~~~e~-----~---~~~g~~~~~~~~l~~~i~~l~~~~ 331 (363)
T cd04955 299 DNPFNREV-----L---GDKAIYFKVGDDLASLLEELEADP 331 (363)
T ss_pred cCCcccee-----e---cCCeeEecCchHHHHHHHHHHhCH
Confidence 64422211 1 123444343344777777777765
No 56
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.51 E-value=2.2e-13 Score=103.25 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=88.5
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCC------CchHHH
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN------GHTTSM 76 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~------~g~~~l 76 (130)
+.++.+. |+.+|+++|. ++..+.+++.....+. ++|.|.|.++.+++..+|+.+|+++.|+..+ .+++++
T Consensus 242 ~~~l~~~-~~~~l~i~G~-~~~~~~~~~~~~~~~~--~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~ 317 (394)
T cd03794 242 AALLKDR-PDIRFLIVGD-GPEKEELKELAKALGL--DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLF 317 (394)
T ss_pred HHHHhhc-CCeEEEEeCC-cccHHHHHHHHHHcCC--CcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHH
Confidence 4455555 7899999996 5777778887777676 6899999999999999999999999876532 267799
Q ss_pred HHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 77 DVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 77 EAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
|||+||+|||+.+......-. .. +-.+++. .|.+++++...++++|++
T Consensus 318 Ea~~~G~pvi~~~~~~~~~~~-----~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~ 367 (394)
T cd03794 318 EYMAAGKPVLASVDGESAELV-----EE-AGAGLVVPPGDPEALAAAILELLDDPE 367 (394)
T ss_pred HHHHCCCcEEEecCCCchhhh-----cc-CCcceEeCCCCHHHHHHHHHHHHhChH
Confidence 999999999998765332222 11 2233333 378999999999887763
No 57
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.50 E-value=1.7e-14 Score=97.49 Aligned_cols=110 Identities=19% Similarity=0.184 Sum_probs=75.7
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC--CCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC--NGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~--~~g~~~lEAl 79 (130)
+|.++.++.|+.+|.++|. ++. .++++ . .++|+|.|++ +++..+++.||+++.|+.. +.+++++|+|
T Consensus 24 ~~~~l~~~~p~~~l~i~G~-~~~--~l~~~-----~-~~~v~~~g~~--~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~ 92 (135)
T PF13692_consen 24 ALERLKEKHPDIELIIIGN-GPD--ELKRL-----R-RPNVRFHGFV--EELPEILAAADVGLIPSRFNEGFPNKLLEAM 92 (135)
T ss_dssp HHHHHHHHSTTEEEEEECE-SS---HHCCH-----H-HCTEEEE-S---HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHH
T ss_pred HHHHHHHHCcCEEEEEEeC-CHH--HHHHh-----c-CCCEEEcCCH--HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHH
Confidence 6788899999999999996 444 24444 2 2699999999 5899999999999998753 4689999999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccC
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
++|+|||+.+.. ...+....+.+-++..|.+++++...+|++|
T Consensus 93 ~~G~pvi~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 93 AAGKPVIASDNG------AEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp CTT--EEEEHHH------CHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred HhCCCEEECCcc------hhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 999999997641 1122222344456678999999999999887
No 58
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.49 E-value=2.9e-13 Score=115.18 Aligned_cols=117 Identities=9% Similarity=-0.055 Sum_probs=80.9
Q ss_pred HHHHHhhCCCcEEEEeecCcc-----------cHHHHHHHHHHcCCCCCCEEEecCC-CHHHHHHhhc----cccEEEcC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV-----------GEANIQATAQALGLDQHRILFSNVA-AKEEHVRRGQ----LADVCLDT 66 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~-----------~~~~l~~~~~~~g~~~~rv~f~g~~-~~~~~~~~~~----~~Dv~l~~ 66 (130)
|+++.+..++++|+|+|++.. ..+.++++++++|+. ++|.|+|.. +..+...+|+ .+|+|+.|
T Consensus 572 ~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~-g~V~flG~~~~~~~~~elyr~iAd~adVfV~P 650 (784)
T TIGR02470 572 YGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLH-GQIRWIGAQLNRVRNGELYRYIADTKGIFVQP 650 (784)
T ss_pred HHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCC-CeEEEccCcCCcccHHHHHHHhhccCcEEEEC
Confidence 444433446789999996321 123567788999998 999999975 4444444443 35899888
Q ss_pred CC-CCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 67 PL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 67 ~~-~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
+. +++|++++|||+||+|||+++......- + ..|.++++.+ |.+++.+...+++
T Consensus 651 S~~EpFGLvvLEAMAcGlPVVAT~~GG~~Ei-----V-~dg~tGfLVdp~D~eaLA~aL~~ll 707 (784)
T TIGR02470 651 ALYEAFGLTVLEAMTCGLPTFATRFGGPLEI-----I-QDGVSGFHIDPYHGEEAAEKIVDFF 707 (784)
T ss_pred CcccCCCHHHHHHHHcCCCEEEcCCCCHHHH-----h-cCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 75 5789999999999999999865433322 2 1366776653 6788887777654
No 59
>PLN00142 sucrose synthase
Probab=99.49 E-value=4.6e-13 Score=114.17 Aligned_cols=117 Identities=9% Similarity=-0.054 Sum_probs=83.9
Q ss_pred hHHHHHhhCCCcEEEEeecCc-c----cH------HHHHHHHHHcCCCCCCEEEecCC----CHHHHHHhhc-cccEEEc
Q psy15363 2 SDIFVLKAVPNSILWLLKFPA-V----GE------ANIQATAQALGLDQHRILFSNVA----AKEEHVRRGQ-LADVCLD 65 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~-~----~~------~~l~~~~~~~g~~~~rv~f~g~~----~~~~~~~~~~-~~Dv~l~ 65 (130)
+|+++.+..|+++|+|+|++. + +. +.++++++++|+. ++|.|+|.. +..++..+++ .+|+|+.
T Consensus 594 A~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~-~~V~flG~~~~~~~~~eLyr~iadaaDVfVl 672 (815)
T PLN00142 594 WYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLK-GQFRWIAAQTNRVRNGELYRYIADTKGAFVQ 672 (815)
T ss_pred HHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCC-CcEEEcCCcCCcccHHHHHHHHHhhCCEEEe
Confidence 456665667789999999641 1 11 3467788999998 999999854 3466766666 4799998
Q ss_pred CCC-CCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHh
Q psy15363 66 TPL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRL 125 (130)
Q Consensus 66 ~~~-~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l 125 (130)
|+. +++|++++|||+||+|||+++...... ++ ..|.++++. .|.+++.+...++
T Consensus 673 PS~~EgFGLvvLEAMA~GlPVVATdvGG~~E-----IV-~dG~tG~LV~P~D~eaLA~aI~~l 729 (815)
T PLN00142 673 PALYEAFGLTVVEAMTCGLPTFATCQGGPAE-----II-VDGVSGFHIDPYHGDEAANKIADF 729 (815)
T ss_pred CCcccCCCHHHHHHHHcCCCEEEcCCCCHHH-----Hh-cCCCcEEEeCCCCHHHHHHHHHHH
Confidence 875 568999999999999999986543322 22 237777765 3778877776543
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.46 E-value=3.9e-13 Score=102.88 Aligned_cols=113 Identities=19% Similarity=0.110 Sum_probs=82.0
Q ss_pred HHHHHhh-CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC-HHHHHHhhccccEEEcCCC-CCCchHHHHHH
Q psy15363 3 DIFVLKA-VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA-KEEHVRRGQLADVCLDTPL-CNGHTTSMDVL 79 (130)
Q Consensus 3 w~~il~~-~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~-~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAl 79 (130)
|.++.++ .|+.+++++|. ++.... .+.. ++|.|+|+++ .+++..+|+.||+++.|+. +++|.+++|||
T Consensus 215 ~~~l~~~~~~~~~~~i~G~-~~~~~~-------~~~~-~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam 285 (365)
T cd03825 215 LKRLAERWKDDIELVVFGA-SDPEIP-------PDLP-FPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEAL 285 (365)
T ss_pred HHHhhhccCCCeEEEEeCC-Cchhhh-------ccCC-CceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHH
Confidence 4443333 58899999986 332211 1555 8999999999 7889999999999998875 57899999999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
+||+|||+.+.......+. .+..+++. .|.+++++...++.+|++
T Consensus 286 ~~g~PvI~~~~~~~~e~~~------~~~~g~~~~~~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 286 ACGTPVVAFDVGGIPDIVD------HGVTGYLAKPGDPEDLAEGIEWLLADPD 332 (365)
T ss_pred hcCCCEEEecCCCChhhee------CCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 9999999986543333221 13345544 378899999888888763
No 61
>PHA01633 putative glycosyl transferase group 1
Probab=99.46 E-value=4.9e-13 Score=104.63 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=63.9
Q ss_pred hHHHHHhhCCC----cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe---cCCCHHHHHHhhccccEEEcCCC-CCCch
Q psy15363 2 SDIFVLKAVPN----SILWLLKFPAVGEANIQATAQALGLDQHRILFS---NVAAKEEHVRRGQLADVCLDTPL-CNGHT 73 (130)
Q Consensus 2 ~w~~il~~~P~----a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~---g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~ 73 (130)
+|.++.++.|+ .+++++|+ + ..+++++. ++|+|+ |.++.+++..+|+.+|+|+.|+. +++|+
T Consensus 169 A~~~L~~~~p~~~~~i~l~ivG~-----~----~~~~l~l~-~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGl 238 (335)
T PHA01633 169 VFNELNTKYPDIAKKIHFFVISH-----K----QFTQLEVP-ANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGM 238 (335)
T ss_pred HHHHHHHhCCCccccEEEEEEcH-----H----HHHHcCCC-CcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCH
Confidence 57778778775 47777763 1 23567786 899999 55678899999999999998875 67899
Q ss_pred HHHHHHhcCCcEEecCCC
Q psy15363 74 TSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 74 ~~lEAla~G~PvV~~~g~ 91 (130)
+++|||+||+|||+.+-.
T Consensus 239 vlLEAMA~G~PVVas~~~ 256 (335)
T PHA01633 239 PVLESMAMGTPVIHQLMP 256 (335)
T ss_pred HHHHHHHcCCCEEEccCC
Confidence 999999999999998544
No 62
>PHA01630 putative group 1 glycosyl transferase
Probab=99.46 E-value=6.2e-13 Score=103.78 Aligned_cols=117 Identities=7% Similarity=-0.037 Sum_probs=78.8
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+|+++.++.|+.+++++|+ +..+..+ .++. + +.+.++.+++..+|+.||+|+.|+. +++|++++|||+
T Consensus 163 A~~~l~~~~~~~~llivG~-~~~~~~l------~~~~-~---~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA 231 (331)
T PHA01630 163 IFHELQNEGYDFYFLIKSS-NMLDPRL------FGLN-G---VKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALA 231 (331)
T ss_pred HHHHHHhhCCCEEEEEEeC-cccchhh------cccc-c---eeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHH
Confidence 5777777889999999995 3332221 1332 2 3567889999999999999998885 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHH---HHHh------------cCCCCceecCHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAAS---QLAT------------LGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~---~l~~------------~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
||+|||+++...+..-+..+ ++-. -+..-++..+.++..+.+.+++.|+
T Consensus 232 ~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~ 295 (331)
T PHA01630 232 LGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANW 295 (331)
T ss_pred cCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCC
Confidence 99999998754333222110 0000 0111233457788888888888763
No 63
>PLN02939 transferase, transferring glycosyl groups
Probab=99.42 E-value=2.1e-12 Score=111.28 Aligned_cols=120 Identities=9% Similarity=-0.060 Sum_probs=83.0
Q ss_pred HHHHHhhCCCcEEEEeecCccc---HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHH
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVG---EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDV 78 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~---~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEA 78 (130)
|.++++ ++.+|+|+|+ |+. ++.++++++++++. ++|.|+|..+......+|+.+|+|+.|+. +++|++.+||
T Consensus 801 ~~~Ll~--~dvqLVIvGd-Gp~~~~e~eL~~La~~l~l~-drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEA 876 (977)
T PLN02939 801 IYKTAE--LGGQFVLLGS-SPVPHIQREFEGIADQFQSN-NNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIA 876 (977)
T ss_pred HHHHhh--cCCEEEEEeC-CCcHHHHHHHHHHHHHcCCC-CeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHH
Confidence 444443 5799999996 443 46788889999987 99999999987766789999999999886 4689999999
Q ss_pred HhcCCcEEecCCCchhhhhHH---HHHHhcCCCCcee--cCHHHHHHHHHHhc
Q psy15363 79 LWTGTPVVTLPGETLASRVAA---SQLATLGCPELIA--RTHKEYQDIAIRLG 126 (130)
Q Consensus 79 la~G~PvV~~~g~~~~~r~~~---~~l~~~g~~~~va--~~~~~y~~~a~~l~ 126 (130)
|+||+|+|+.+......-+.. ......|.++++. .|++++.+...+++
T Consensus 877 MAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL 929 (977)
T PLN02939 877 MRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAF 929 (977)
T ss_pred HHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHH
Confidence 999998887643322211100 0000113455543 47777766555543
No 64
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.41 E-value=3.5e-12 Score=99.31 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=81.3
Q ss_pred CCcEEEEeecCccc---HHHHHHHHHHcCCCCCCEEEe-cCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcE
Q psy15363 11 PNSILWLLKFPAVG---EANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 11 P~a~l~i~g~~~~~---~~~l~~~~~~~g~~~~rv~f~-g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~Pv 85 (130)
++.+++++|+++.. .+.+++.+++++...++++|. |.++.+++..+|+.||+|+.|+. +++|++++|||+||+||
T Consensus 228 ~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~Pv 307 (388)
T TIGR02149 228 KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPV 307 (388)
T ss_pred hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCE
Confidence 57888888753222 355677777777644567765 67899999999999999998875 56799999999999999
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCcee--cCH------HHHHHHHHHhccCC
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIA--RTH------KEYQDIAIRLGTDR 129 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va--~~~------~~y~~~a~~l~~d~ 129 (130)
|+++..... .++. .+..+++. .+. +++.+...++.+|+
T Consensus 308 I~s~~~~~~-----e~i~-~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~ 353 (388)
T TIGR02149 308 VASATGGIP-----EVVV-DGETGFLVPPDNSDADGFQAELAKAINILLADP 353 (388)
T ss_pred EEeCCCCHH-----HHhh-CCCceEEcCCCCCcccchHHHHHHHHHHHHhCH
Confidence 998754332 2222 24445543 244 78888888887775
No 65
>PRK14098 glycogen synthase; Provisional
Probab=99.39 E-value=4.4e-12 Score=103.57 Aligned_cols=114 Identities=11% Similarity=-0.076 Sum_probs=79.8
Q ss_pred HHHHHhhCCCcEEEEeecCcc--cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHH
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV--GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVL 79 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~--~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAl 79 (130)
+.++++ ++.+|+++|+ |+ .++.+++++++++ +||.|.|.++.++...+|+.+|+|+.||. +++|++.+|||
T Consensus 329 ~~~l~~--~~~~lvivG~-G~~~~~~~l~~l~~~~~---~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAm 402 (489)
T PRK14098 329 LEKLVE--LDIQLVICGS-GDKEYEKRFQDFAEEHP---EQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAM 402 (489)
T ss_pred HHHHHh--cCcEEEEEeC-CCHHHHHHHHHHHHHCC---CCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHH
Confidence 445543 4799999996 44 3578888888763 79999999999888999999999998885 56899999999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHH
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIR 124 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~ 124 (130)
+||+|+|+........-+.. +...+-++++. .|.+++.+...+
T Consensus 403 a~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~~~d~~~la~ai~~ 447 (489)
T PRK14098 403 SYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFHDYTPEALVAKLGE 447 (489)
T ss_pred hCCCCeEEecCCCCceeeec--CCCCCCceeEeCCCCHHHHHHHHHH
Confidence 99998887654322211100 00013345543 367777666554
No 66
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.38 E-value=4e-12 Score=90.67 Aligned_cols=88 Identities=17% Similarity=0.073 Sum_probs=70.3
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC-HHHHHHhhccccEEEcCCC-CCCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA-KEEHVRRGQLADVCLDTPL-CNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~-~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAl 79 (130)
++.++.++.|+.+++++|. +......++...+.+.. ++|.|.|.++ .+++..+++.||+++.|+. ++.|++++|||
T Consensus 125 a~~~l~~~~~~~~~~i~G~-~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam 202 (229)
T cd01635 125 AFALLKERGPDLKLVIAGD-GPEREYLEELLAALLLL-DRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAM 202 (229)
T ss_pred HHHHHHHhCCCeEEEEEeC-CCChHHHHHHHHhcCCc-ccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHH
Confidence 4667777889999999996 45555555556777776 8999999985 4555566666999998875 56799999999
Q ss_pred hcCCcEEecCCC
Q psy15363 80 WTGTPVVTLPGE 91 (130)
Q Consensus 80 a~G~PvV~~~g~ 91 (130)
+||+|+|+.+..
T Consensus 203 ~~g~pvi~s~~~ 214 (229)
T cd01635 203 ACGLPVIATDVG 214 (229)
T ss_pred hCCCCEEEcCCC
Confidence 999999998765
No 67
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.37 E-value=5e-12 Score=99.42 Aligned_cols=111 Identities=17% Similarity=0.006 Sum_probs=78.8
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC------CCchHHH
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC------NGHTTSM 76 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~------~~g~~~l 76 (130)
..++.+..|+.+++++|. ++......+ ... .++|+|+|.++++++..+|+.+|+++.|+.. +.++.++
T Consensus 223 l~~la~~~p~~~~vliG~-~~~~~~~~~---~~~--~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~ 296 (373)
T cd04950 223 LEALAKARPDWSFVLIGP-VDVSIDPSA---LLR--LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLF 296 (373)
T ss_pred HHHHHHHCCCCEEEEECC-CcCccChhH---hcc--CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHH
Confidence 456677889999999996 322111111 112 2799999999999999999999999988742 3578999
Q ss_pred HHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 77 DVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 77 EAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
|+|+||+|||+++.. ++....+...++..|.+++++...+++.
T Consensus 297 EylA~G~PVVat~~~--------~~~~~~~~~~~~~~d~~~~~~ai~~~l~ 339 (373)
T cd04950 297 EYLAAGKPVVATPLP--------EVRRYEDEVVLIADDPEEFVAAIEKALL 339 (373)
T ss_pred HHhccCCCEEecCcH--------HHHhhcCcEEEeCCCHHHHHHHHHHHHh
Confidence 999999999987532 2222222112345689999999988543
No 68
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.36 E-value=8.4e-12 Score=97.93 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=79.7
Q ss_pred HhhCCCcEEEEeecCc-ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcE
Q psy15363 7 LKAVPNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 7 l~~~P~a~l~i~g~~~-~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~Pv 85 (130)
+.+.|+.+++++++++ ..++.+++++++++ ++|+|+|+++ ++..+|+.||+++. ..+|++++|||+||+||
T Consensus 225 l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~---~~v~~~g~~~--~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~Pv 296 (380)
T PRK13609 225 LMSVPDLQVVVVCGKNEALKQSLEDLQETNP---DALKVFGYVE--NIDELFRVTSCMIT---KPGGITLSEAAALGVPV 296 (380)
T ss_pred HhhCCCcEEEEEeCCCHHHHHHHHHHHhcCC---CcEEEEechh--hHHHHHHhccEEEe---CCCchHHHHHHHhCCCE
Confidence 3455889988876422 34567777776654 6899999984 56788999999983 35689999999999999
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
|+...........+.++...|. .+...+.+++.+...++++|++
T Consensus 297 I~~~~~~g~~~~n~~~~~~~G~-~~~~~~~~~l~~~i~~ll~~~~ 340 (380)
T PRK13609 297 ILYKPVPGQEKENAMYFERKGA-AVVIRDDEEVFAKTEALLQDDM 340 (380)
T ss_pred EECCCCCCcchHHHHHHHhCCc-EEEECCHHHHHHHHHHHHCCHH
Confidence 9864211111222234444444 2455788999998888888763
No 69
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.35 E-value=1.3e-11 Score=99.97 Aligned_cols=121 Identities=16% Similarity=-0.047 Sum_probs=78.0
Q ss_pred hHHHHHhhCCCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAl 79 (130)
+|++++++ +.+|+++|++.+ .++.+++++++++ +++.|....+.+....+|+.||+|+.|+. +++|++.+|||
T Consensus 303 a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~---~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAm 377 (466)
T PRK00654 303 ALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYP---GKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYAL 377 (466)
T ss_pred HHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCC---CcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHH
Confidence 45556543 799999996322 3567888888876 46665433465556688999999999886 46799999999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhcc
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT 127 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~ 127 (130)
+||+|+|+.+......-+...--...+-.+++. .|.+++.+...++++
T Consensus 378 a~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 378 RYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred HCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 999999987543222211000000001335543 477788777766554
No 70
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.34 E-value=1.1e-11 Score=100.31 Aligned_cols=121 Identities=12% Similarity=-0.078 Sum_probs=81.4
Q ss_pred hHHHHHhhCCCcEEEEeecCc-ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPA-VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~-~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAl 79 (130)
++.++.++ +.+|+++|++. ..++.+++++++++ +++.|.+..+.++...+|+.||+++.|+.+ ++|++.+|||
T Consensus 312 a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~---~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAm 386 (473)
T TIGR02095 312 ALPELLEL--GGQLVVLGTGDPELEEALRELAERYP---GNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAM 386 (473)
T ss_pred HHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCC---CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHH
Confidence 34455433 49999999642 23567777777654 689999888888888899999999998865 6799999999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhcc
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT 127 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~ 127 (130)
+||+|||+.+......-+...--...+-.+++. .|.+++.+...+++.
T Consensus 387 a~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 387 RYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred HCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 999999998654332211100000011345543 477787777666554
No 71
>PLN02316 synthase/transferase
Probab=99.32 E-value=2e-11 Score=106.39 Aligned_cols=123 Identities=15% Similarity=-0.031 Sum_probs=81.3
Q ss_pred hHHHHHhhCCCcEEEEeecCccc---HHHHHHHHHHcCCC-CCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVG---EANIQATAQALGLD-QHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSM 76 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~---~~~l~~~~~~~g~~-~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~l 76 (130)
+++++++ ++++|+|+|+ |++ ++.++++++++|+. ++||.|.+..+......+|+.||+||.||. +++|++.+
T Consensus 861 Al~~ll~--~~~qlVIvG~-Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqL 937 (1036)
T PLN02316 861 AIWRTLE--RNGQVVLLGS-APDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQL 937 (1036)
T ss_pred HHHHHhh--cCcEEEEEeC-CCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHH
Confidence 3455554 4799999996 443 46788899988874 379999987765433478999999998886 56899999
Q ss_pred HHHhcCCcEEecCCCchhhhhHHH-------HHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 77 DVLWTGTPVVTLPGETLASRVAAS-------QLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 77 EAla~G~PvV~~~g~~~~~r~~~~-------~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|||+||+|+|+.+......-+... -....+-++|+.+ |.+++.....+++.
T Consensus 938 EAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~ 997 (1036)
T PLN02316 938 TAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAIS 997 (1036)
T ss_pred HHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHh
Confidence 999999887776543332221100 0000123455543 66666666555554
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.32 E-value=6.7e-12 Score=101.74 Aligned_cols=119 Identities=16% Similarity=0.080 Sum_probs=80.7
Q ss_pred hHHHHHhhCCC----cEEEEeecCc----ccHHHHH----HHHHHcCCC-----CCCEE-EecCCCHHHHHHhhccccEE
Q psy15363 2 SDIFVLKAVPN----SILWLLKFPA----VGEANIQ----ATAQALGLD-----QHRIL-FSNVAAKEEHVRRGQLADVC 63 (130)
Q Consensus 2 ~w~~il~~~P~----a~l~i~g~~~----~~~~~l~----~~~~~~g~~-----~~rv~-f~g~~~~~~~~~~~~~~Dv~ 63 (130)
+|.+++++.|+ .+|+++|.+. +..+.++ +++++.+.. ...|+ |.|.++.+++..+|+.||+|
T Consensus 285 A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~ 364 (460)
T cd03788 285 AFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVA 364 (460)
T ss_pred HHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEE
Confidence 57788889997 5788887431 2233343 333332211 12354 45788999999999999999
Q ss_pred EcCCC-CCCchHHHHHHhcCCc----EEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 64 LDTPL-CNGHTTSMDVLWTGTP----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 64 l~~~~-~~~g~~~lEAla~G~P----vV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
+.|+. ++.|++++|||+||+| ||+.... +..- . +.++++. .|.+++.+...++++++
T Consensus 365 v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~------G~~~--~-~~~g~lv~p~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 365 LVTPLRDGMNLVAKEYVACQDDDPGVLILSEFA------GAAE--E-LSGALLVNPYDIDEVADAIHRALTMP 428 (460)
T ss_pred EeCccccccCcccceeEEEecCCCceEEEeccc------cchh--h-cCCCEEECCCCHHHHHHHHHHHHcCC
Confidence 98875 6779999999999999 6665321 1100 1 3445554 48899999888888765
No 73
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.27 E-value=3.5e-11 Score=97.64 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=80.8
Q ss_pred ChHHHHHhhCCC----cEEEEeecC----cccHHHHHHHHHHc--------CCC-C-CCEEEecCCCHHHHHHhhccccE
Q psy15363 1 MSDIFVLKAVPN----SILWLLKFP----AVGEANIQATAQAL--------GLD-Q-HRILFSNVAAKEEHVRRGQLADV 62 (130)
Q Consensus 1 ~~w~~il~~~P~----a~l~i~g~~----~~~~~~l~~~~~~~--------g~~-~-~rv~f~g~~~~~~~~~~~~~~Dv 62 (130)
++|.+++++.|+ .+|+++|.+ ++..+.+++.++++ |.. . .-+.|.+.++.+++.++|+.||+
T Consensus 279 ~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv 358 (456)
T TIGR02400 279 LAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADV 358 (456)
T ss_pred HHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcE
Confidence 367888999997 457777632 23345566666554 211 0 12344567889999999999999
Q ss_pred EEcCCC-CCCchHHHHHHhcCCc----EEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 63 CLDTPL-CNGHTTSMDVLWTGTP----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 63 ~l~~~~-~~~g~~~lEAla~G~P----vV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
|+.|+. ++.|++++|||+||+| ||+...... +..+ + ++++. .|.+++.+...++++++
T Consensus 359 ~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~-----~~~l---~-~gllVnP~d~~~lA~aI~~aL~~~ 423 (456)
T TIGR02400 359 GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA-----AQEL---N-GALLVNPYDIDGMADAIARALTMP 423 (456)
T ss_pred EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC-----hHHh---C-CcEEECCCCHHHHHHHHHHHHcCC
Confidence 998875 6779999999999999 776643211 1222 2 34443 47788888777777654
No 74
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.27 E-value=8.3e-11 Score=91.96 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=80.4
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhc
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWT 81 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~ 81 (130)
++.++.++.|+.++++.+++++. ...++.+.++.. ++|+|++.++..++..+++.+|+++.++ |..++|||+|
T Consensus 220 a~~~l~~~~~~~~~vi~~~~~~~--~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~~ad~vv~~S----g~~~~EA~a~ 292 (365)
T TIGR00236 220 AIREIVEEFEDVQIVYPVHLNPV--VREPLHKHLGDS-KRVHLIEPLEYLDFLNLAANSHLILTDS----GGVQEEAPSL 292 (365)
T ss_pred HHHHHHHHCCCCEEEEECCCChH--HHHHHHHHhCCC-CCEEEECCCChHHHHHHHHhCCEEEECC----hhHHHHHHHc
Confidence 45666777899998887643222 112234445664 7999999999999999999999998554 4457999999
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
|+|||+..... +|. .+. ..|...++..|.++..+...++++|+
T Consensus 293 g~PvI~~~~~~--~~~--e~~-~~g~~~lv~~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 293 GKPVLVLRDTT--ERP--ETV-EAGTNKLVGTDKENITKAAKRLLTDP 335 (365)
T ss_pred CCCEEECCCCC--CCh--HHH-hcCceEEeCCCHHHHHHHHHHHHhCh
Confidence 99999974211 111 122 23544455568899988888888775
No 75
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.25 E-value=7.8e-11 Score=94.86 Aligned_cols=114 Identities=15% Similarity=-0.075 Sum_probs=78.3
Q ss_pred HHHHHhhCCCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+.++.++ +.+|+++|.+.. ..+.++++.+++ .+++.|.+..+.++...+|+.||+++.|+. +++|++.+|||+
T Consensus 318 ~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma 392 (476)
T cd03791 318 LPELLEL--GGQLVILGSGDPEYEEALRELAARY---PGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMR 392 (476)
T ss_pred HHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhh
Confidence 4444433 389999996422 245666666665 378988877777777789999999999886 467999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCC------CCcee--cCHHHHHHHHHHhcc
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGC------PELIA--RTHKEYQDIAIRLGT 127 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~------~~~va--~~~~~y~~~a~~l~~ 127 (130)
||+|||+.+...+..-+. .|. ++++. .|.+++.+...++++
T Consensus 393 ~G~pvI~~~~gg~~e~v~------~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 393 YGTVPIVRATGGLADTVI------DYNEDTGEGTGFVFEGYNADALLAALRRALA 441 (476)
T ss_pred CCCCCEECcCCCccceEe------CCcCCCCCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 999999986543322221 122 45443 467777777766553
No 76
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.25 E-value=9.5e-11 Score=92.97 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=79.3
Q ss_pred HhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEE
Q psy15363 7 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV 86 (130)
Q Consensus 7 l~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV 86 (130)
++..|+.+++++++++. +..+++.+..+.. ++|.|+|++ +++..+|+.||+++. ..+|+|++|||+||+|+|
T Consensus 226 ~~~~~~~~~vvv~G~~~--~l~~~l~~~~~~~-~~v~~~G~~--~~~~~~~~~aDl~I~---k~gg~tl~EA~a~G~PvI 297 (391)
T PRK13608 226 LAKSANAQVVMICGKSK--ELKRSLTAKFKSN-ENVLILGYT--KHMNEWMASSQLMIT---KPGGITISEGLARCIPMI 297 (391)
T ss_pred HhcCCCceEEEEcCCCH--HHHHHHHHHhccC-CCeEEEecc--chHHHHHHhhhEEEe---CCchHHHHHHHHhCCCEE
Confidence 44557888877764322 1122233334444 689999998 568889999999984 247889999999999999
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
+...........+.++...|.. +...|.+++.+...+|++|++
T Consensus 298 ~~~~~pgqe~~N~~~~~~~G~g-~~~~~~~~l~~~i~~ll~~~~ 340 (391)
T PRK13608 298 FLNPAPGQELENALYFEEKGFG-KIADTPEEAIKIVASLTNGNE 340 (391)
T ss_pred ECCCCCCcchhHHHHHHhCCcE-EEeCCHHHHHHHHHHHhcCHH
Confidence 9843222233445566666664 456789999998888888763
No 77
>PRK14099 glycogen synthase; Provisional
Probab=99.23 E-value=1e-10 Score=95.52 Aligned_cols=120 Identities=22% Similarity=0.049 Sum_probs=74.3
Q ss_pred HHHHHhhCCCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCE-EEecCCCHHHHHHhh-ccccEEEcCCC-CCCchHHHHH
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRI-LFSNVAAKEEHVRRG-QLADVCLDTPL-CNGHTTSMDV 78 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv-~f~g~~~~~~~~~~~-~~~Dv~l~~~~-~~~g~~~lEA 78 (130)
++++++ ++.+|+++|++.+ .++.+++++++++ +++ .|+|+ .+++..+| +.||+|+.||. +++|++.+||
T Consensus 317 ~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~---~~v~~~~G~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEA 389 (485)
T PRK14099 317 LPTLLG--EGAQLALLGSGDAELEARFRAAAQAYP---GQIGVVIGY--DEALAHLIQAGADALLVPSRFEPCGLTQLCA 389 (485)
T ss_pred HHHHHh--cCcEEEEEecCCHHHHHHHHHHHHHCC---CCEEEEeCC--CHHHHHHHHhcCCEEEECCccCCCcHHHHHH
Confidence 344443 3689999996322 3567888877764 455 78897 46777776 56999999886 5679999999
Q ss_pred HhcCCcEEecCCCchhhhhHH--HHHHhcC-CCCcee--cCHHHHHHHHHH---hccCC
Q psy15363 79 LWTGTPVVTLPGETLASRVAA--SQLATLG-CPELIA--RTHKEYQDIAIR---LGTDR 129 (130)
Q Consensus 79 la~G~PvV~~~g~~~~~r~~~--~~l~~~g-~~~~va--~~~~~y~~~a~~---l~~d~ 129 (130)
|+||+|+|+.+......-+.. ......| -.+++. .|.+++.+...+ +.+|+
T Consensus 390 ma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~ 448 (485)
T PRK14099 390 LRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADP 448 (485)
T ss_pred HHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCH
Confidence 999966555432222111110 0000001 235553 477777776654 66664
No 78
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.23 E-value=1.2e-10 Score=91.84 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=71.7
Q ss_pred CCCcE-EEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 10 VPNSI-LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 10 ~P~a~-l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.|+.+ ++++|. +. .+++.+++.... .+|+|+|+++ ++..+|+.||+++.+ ++|.|++|||+||+|+|++
T Consensus 239 ~~~~~~~vi~G~-~~---~~~~~L~~~~~~-~~v~~~G~~~--~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~ 308 (382)
T PLN02605 239 KPIGQVVVICGR-NK---KLQSKLESRDWK-IPVKVRGFVT--NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILN 308 (382)
T ss_pred CCCceEEEEECC-CH---HHHHHHHhhccc-CCeEEEeccc--cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEe
Confidence 36665 455554 32 223333333333 6899999995 688999999999953 3678999999999999998
Q ss_pred CCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccC
Q psy15363 89 PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
+--.......+..+...|.. +...|.+++.+...+|++|
T Consensus 309 ~~~pgqe~gn~~~i~~~g~g-~~~~~~~~la~~i~~ll~~ 347 (382)
T PLN02605 309 GYIPGQEEGNVPYVVDNGFG-AFSESPKEIARIVAEWFGD 347 (382)
T ss_pred cCCCccchhhHHHHHhCCce-eecCCHHHHHHHHHHHHcC
Confidence 63111111223344444553 3458999999999998877
No 79
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.22 E-value=9.3e-11 Score=91.74 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=78.6
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~ 81 (130)
+.++.++.|+.+++++|+++..++.+++..+++ |+. +.+.. .++..+|+.||+++.++ |++++|||++
T Consensus 211 ~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---v~~~~----~~~~~~~~~aDl~v~~s----G~~~lEa~a~ 279 (380)
T PRK00025 211 AQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---VTLLD----GQKREAMAAADAALAAS----GTVTLELALL 279 (380)
T ss_pred HHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---eEEEc----ccHHHHHHhCCEEEECc----cHHHHHHHHh
Confidence 445667789999999875345567788887777 653 55543 36788999999999654 7888899999
Q ss_pred CCcEEecCCCchhhhhHHHHH---HhcC----------CCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 82 GTPVVTLPGETLASRVAASQL---ATLG----------CPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l---~~~g----------~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
|+|+|+.+.........+..+ +..+ .++++. .|.+++.+...++++|++
T Consensus 280 G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~ 343 (380)
T PRK00025 280 KVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGA 343 (380)
T ss_pred CCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHH
Confidence 999998754332222111111 1112 233443 367889999999988874
No 80
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.20 E-value=2e-10 Score=88.53 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=77.4
Q ss_pred CCcEEE-EeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 11 PNSILW-LLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 11 P~a~l~-i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
++.+++ ++|. + .++.+++.++++ . ++|.|.|++ +++..+|+.||+++.++ ++++++|||++|+|||+.+
T Consensus 210 ~~~~~~~i~G~-g-~~~~l~~~~~~~--~-~~v~~~g~~--~~~~~~l~~ad~~v~~s---g~~t~~Eam~~G~Pvv~~~ 279 (350)
T cd03785 210 KRLQVIHQTGK-G-DLEEVKKAYEEL--G-VNYEVFPFI--DDMAAAYAAADLVISRA---GASTVAELAALGLPAILIP 279 (350)
T ss_pred cCeEEEEEcCC-c-cHHHHHHHHhcc--C-CCeEEeehh--hhHHHHHHhcCEEEECC---CHhHHHHHHHhCCCEEEee
Confidence 455544 5564 4 567788888776 3 799999998 77888999999999533 4788999999999999975
Q ss_pred CCc---hhhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhccCC
Q psy15363 90 GET---LASRVAASQLATLGCPELIAR---THKEYQDIAIRLGTDR 129 (130)
Q Consensus 90 g~~---~~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~~d~ 129 (130)
-.. -.....+..+...|..-.+.. |.+++.+...++++|+
T Consensus 280 ~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 280 LPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325 (350)
T ss_pred cCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCH
Confidence 321 111122344555566555543 7899999988888775
No 81
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.20 E-value=7.6e-11 Score=94.22 Aligned_cols=68 Identities=12% Similarity=0.007 Sum_probs=53.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC-CHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-AKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~-~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~ 88 (130)
++.+|+++|. ++... .+++.++|.. +.+++..+|+.+|+|+.|+. +++|++++|||+||+|||++
T Consensus 270 ~~~~L~ivG~-g~~~~------------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat 336 (405)
T PRK10125 270 DKIELHTFGK-FSPFT------------AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIAT 336 (405)
T ss_pred CCeEEEEEcC-CCccc------------ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEe
Confidence 4667777775 22110 1578888887 46789999999999988875 57899999999999999999
Q ss_pred CCC
Q psy15363 89 PGE 91 (130)
Q Consensus 89 ~g~ 91 (130)
+-.
T Consensus 337 ~~g 339 (405)
T PRK10125 337 HSD 339 (405)
T ss_pred CCC
Confidence 754
No 82
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=1.2e-09 Score=80.36 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=84.4
Q ss_pred HHHhhCCCcEEEEeecCccc-HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcC
Q psy15363 5 FVLKAVPNSILWLLKFPAVG-EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTG 82 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~-~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G 82 (130)
.+.+..|+..++++|. ++. .+.+.+.+++.+.. +++.|.|.++.+++..+++.+|+++.|+. ++.|.+++|||++|
T Consensus 223 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g 300 (381)
T COG0438 223 KLKKRGPDIKLVIVGD-GPERREELEKLAKKLGLE-DNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAG 300 (381)
T ss_pred HhhhhcCCeEEEEEcC-CCccHHHHHHHHHHhCCC-CcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcC
Confidence 3444445578999996 444 35677788888875 89999999997788888999999998876 57899999999999
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCC-ceec-CHHHHHHHHHHhccCC
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPE-LIAR-THKEYQDIAIRLGTDR 129 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~-~va~-~~~~y~~~a~~l~~d~ 129 (130)
+|||+........-+ ...+ .+ ++.. +.+++.+....+.+++
T Consensus 301 ~pvi~~~~~~~~e~~-----~~~~-~g~~~~~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 301 TPVIASDVGGIPEVV-----EDGE-TGLLVPPGDVEELADALEQLLEDP 343 (381)
T ss_pred CcEEECCCCChHHHh-----cCCC-ceEecCCCCHHHHHHHHHHHhcCH
Confidence 999998655332222 2211 13 2333 4788888888777653
No 83
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.11 E-value=1.1e-09 Score=84.97 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=78.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
+..+++.|+ +..++.+++.+++++...++|.|++.....++..+|+.||+++.++. | ...||+++|+|+|+....
T Consensus 231 ~~~vi~~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg---g-i~~Ea~~~g~PvI~~~~~ 305 (363)
T cd03786 231 DVPVVFPNH-PRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG---G-IQEEASFLGVPVLNLRDR 305 (363)
T ss_pred CCEEEEECC-CChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc---c-HHhhhhhcCCCEEeeCCC
Confidence 455555553 45678889888888873379999999888899999999999986653 3 579999999999998643
Q ss_pred chhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 92 TLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 92 ~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
.- .+ .+-..|..-++.++.++..+...++++|++
T Consensus 306 ~~-~~----~~~~~g~~~~~~~~~~~i~~~i~~ll~~~~ 339 (363)
T cd03786 306 TE-RP----ETVESGTNVLVGTDPEAILAAIEKLLSDEF 339 (363)
T ss_pred Cc-cc----hhhheeeEEecCCCHHHHHHHHHHHhcCch
Confidence 11 11 111235544454578899988888888763
No 84
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.06 E-value=1.2e-09 Score=84.08 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=74.5
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
+.++++++++ ...+.+++.++++++. +++.|.. .++..+|+.||+++.+ +++++++|||++|+|+|+.+-.
T Consensus 209 ~~~~~~~~g~-~~~~~l~~~~~~~~l~-~~v~~~~----~~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~ 279 (348)
T TIGR01133 209 GIQIVHQTGK-NDLEKVKNVYQELGIE-AIVTFID----ENMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYP 279 (348)
T ss_pred CcEEEEECCc-chHHHHHHHHhhCCce-EEecCcc----cCHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCC
Confidence 4455455433 3457888888888885 6777762 2677889999999853 2478999999999999987432
Q ss_pred ch--hhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhccCCC
Q psy15363 92 TL--ASRVAASQLATLGCPELIAR---THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 92 ~~--~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~~d~e 130 (130)
.. ..+..+.++...+..-++.. +.+++.+...++++|++
T Consensus 280 ~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~ 323 (348)
T TIGR01133 280 YAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPA 323 (348)
T ss_pred CCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHH
Confidence 11 12233445655454434432 48999999999988764
No 85
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.04 E-value=2.5e-09 Score=83.14 Aligned_cols=107 Identities=15% Similarity=0.193 Sum_probs=74.6
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCc
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 92 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~ 92 (130)
.+++++|. ++ .+.+++..+ +|+ + |.|.|++ +++..+|..||+++.++ ++++++|||++|+|||+.+...
T Consensus 214 ~~~~~~G~-g~-~~~~~~~~~-~~~--~-v~~~g~~--~~~~~~~~~~d~~i~~~---g~~~~~Ea~~~g~Pvv~~~~~~ 282 (357)
T PRK00726 214 QVIHQTGK-GD-LEEVRAAYA-AGI--N-AEVVPFI--DDMAAAYAAADLVICRA---GASTVAELAAAGLPAILVPLPH 282 (357)
T ss_pred EEEEEcCC-Cc-HHHHHHHhh-cCC--c-EEEeehH--hhHHHHHHhCCEEEECC---CHHHHHHHHHhCCCEEEecCCC
Confidence 45667775 44 355555555 776 3 9999998 67888999999998543 4688999999999999986321
Q ss_pred ---hhhhhHHHHHHhcCCCCceec-C--HHHHHHHHHHhccCCC
Q psy15363 93 ---LASRVAASQLATLGCPELIAR-T--HKEYQDIAIRLGTDRD 130 (130)
Q Consensus 93 ---~~~r~~~~~l~~~g~~~~va~-~--~~~y~~~a~~l~~d~e 130 (130)
......+..+...|..-++.. + .+++.+...++++|++
T Consensus 283 ~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~ 326 (357)
T PRK00726 283 AADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPE 326 (357)
T ss_pred CCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHH
Confidence 112223455555666444542 3 8899999999988763
No 86
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.01 E-value=6.4e-09 Score=82.63 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=79.9
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGT 83 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~ 83 (130)
.++.++.|+.++++.+.++..++.+++..++++.. .+|.+.+. +...+|+.||+++.++ |++++|+|++|+
T Consensus 217 ~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~ 287 (385)
T TIGR00215 217 QLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPD-LQLHLIDG----DARKAMFAADAALLAS----GTAALEAALIKT 287 (385)
T ss_pred HHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCC-CcEEEECc----hHHHHHHhCCEEeecC----CHHHHHHHHcCC
Confidence 55667789988877654445667777777777765 68877653 3446889999999666 778889999999
Q ss_pred cEEecCCCchhhhhHHHH-------------HHhcCCCCceec--CHHHHHHHHHHhccCC
Q psy15363 84 PVVTLPGETLASRVAASQ-------------LATLGCPELIAR--THKEYQDIAIRLGTDR 129 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~-------------l~~~g~~~~va~--~~~~y~~~a~~l~~d~ 129 (130)
|+|....-++.....+.. .+.--.+|++.+ +++...+.+.+|++|+
T Consensus 288 P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 288 PMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred CEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 988875544444332222 111223455533 5778888888888886
No 87
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.00 E-value=1.4e-09 Score=93.56 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=78.7
Q ss_pred hHHHHHhhCCCcE----EEEeecC----cccHHHHHHHHHHcC--CCCCC--------EEEe-cCCCHHHHHHhhccccE
Q psy15363 2 SDIFVLKAVPNSI----LWLLKFP----AVGEANIQATAQALG--LDQHR--------ILFS-NVAAKEEHVRRGQLADV 62 (130)
Q Consensus 2 ~w~~il~~~P~a~----l~i~g~~----~~~~~~l~~~~~~~g--~~~~r--------v~f~-g~~~~~~~~~~~~~~Dv 62 (130)
+|.++++++|+.+ |+.++.+ ++..+.+++.+++++ ++ ++ |+++ +.++.+++.++|+.||+
T Consensus 300 Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In-~~~g~~~~~pv~~l~~~v~~~el~aly~~ADv 378 (797)
T PLN03063 300 AFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRIN-GRFGSVSSVPIHHLDCSVDFNYLCALYAITDV 378 (797)
T ss_pred HHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhh-cccccCCCceeEEecCCCCHHHHHHHHHhCCE
Confidence 6888999999864 4434422 234556777777664 43 32 3333 47899999999999999
Q ss_pred EEcCCC-CCCchHHHHHHhcCCc----EEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhcc
Q psy15363 63 CLDTPL-CNGHTTSMDVLWTGTP----VVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT 127 (130)
Q Consensus 63 ~l~~~~-~~~g~~~lEAla~G~P----vV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~ 127 (130)
|+.|+. ++.+++++|||+||+| +|...-... +.. +|...++. .|.++..+...++++
T Consensus 379 fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~-----~~~---l~~~allVnP~D~~~lA~AI~~aL~ 442 (797)
T PLN03063 379 MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA-----GQS---LGAGALLVNPWNITEVSSAIKEALN 442 (797)
T ss_pred EEeCccccccCcchhhHheeecCCCCCEEeeCCcCc-----hhh---hcCCeEEECCCCHHHHHHHHHHHHh
Confidence 998875 6789999999999998 666532211 111 23344443 477777777777666
No 88
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.99 E-value=2.2e-09 Score=88.48 Aligned_cols=118 Identities=12% Similarity=0.085 Sum_probs=93.0
Q ss_pred hHHHHHhhCCCcEEEEeecCcc--cHHHHHHHHHHcCCC----------------------------CCCEEEecCCCHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV--GEANIQATAQALGLD----------------------------QHRILFSNVAAKE 51 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~--~~~~l~~~~~~~g~~----------------------------~~rv~f~g~~~~~ 51 (130)
++.++++++|++.|.+.|.+.. ..+.+++.+++++.+ .++|.|.|..+..
T Consensus 341 av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~~e~ 420 (519)
T TIGR03713 341 QLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTLTNEE 420 (519)
T ss_pred HHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEecCCHH
Confidence 5788999999999999996422 235676776666554 1699999999888
Q ss_pred HHHHhhccccEEEcCCCC-CCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 52 EHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 52 ~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
++...|..+.++++++.. +++ +.+||++.|+|+|-. |. +-+-..|.++++..+.+++.+.+..++.|+
T Consensus 421 dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqIny-g~--------~~~V~d~~NG~li~d~~~l~~al~~~L~~~ 489 (519)
T TIGR03713 421 DLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQINK-VE--------TDYVEHNKNGYIIDDISELLKALDYYLDNL 489 (519)
T ss_pred HHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCeeec-CC--------ceeeEcCCCcEEeCCHHHHHHHHHHHHhCH
Confidence 999999999999999864 567 999999999999922 11 112234888888899999999999988875
No 89
>KOG0853|consensus
Probab=98.92 E-value=8e-09 Score=84.14 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=82.3
Q ss_pred CCcEEEEeecCcc---------cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC-CCCCchHHHHHHh
Q psy15363 11 PNSILWLLKFPAV---------GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLW 80 (130)
Q Consensus 11 P~a~l~i~g~~~~---------~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla 80 (130)
++-++.++|+.|. ....+++++++.++..+.|.|+...++.+-..+++.+...+.+. .+.+|.|++|||+
T Consensus 308 ~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa 387 (495)
T KOG0853|consen 308 SSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMA 387 (495)
T ss_pred CceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHh
Confidence 5677878873321 13467788999999658899999998877777777888877654 4679999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCcee-cCHH---HHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIA-RTHK---EYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va-~~~~---~y~~~a~~l~~d~e 130 (130)
||+|||++.......-+- .|.++|.. .+.+ .+.+...++.+||+
T Consensus 388 ~glPvvAt~~GGP~EiV~------~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~ 435 (495)
T KOG0853|consen 388 CGLPVVATNNGGPAEIVV------HGVTGLLIDPGQEAVAELADALLKLRRDPE 435 (495)
T ss_pred cCCCEEEecCCCceEEEE------cCCcceeeCCchHHHHHHHHHHHHHhcCHH
Confidence 999999986543333221 26667544 4554 48888888888874
No 90
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.91 E-value=1.7e-09 Score=92.08 Aligned_cols=118 Identities=19% Similarity=0.116 Sum_probs=78.1
Q ss_pred hHHHHHhhCCC----cEEEEeecC---c-ccHHHHHHHHHHc--------CCC-C-CCEEEecCCCHHHHHHhhccccEE
Q psy15363 2 SDIFVLKAVPN----SILWLLKFP---A-VGEANIQATAQAL--------GLD-Q-HRILFSNVAAKEEHVRRGQLADVC 63 (130)
Q Consensus 2 ~w~~il~~~P~----a~l~i~g~~---~-~~~~~l~~~~~~~--------g~~-~-~rv~f~g~~~~~~~~~~~~~~Dv~ 63 (130)
+|.++++++|+ .+|+++|.+ + +..+.+++.++++ |-. . ..+.|.+.++++++.++|+.||+|
T Consensus 286 A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~ 365 (726)
T PRK14501 286 AFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVA 365 (726)
T ss_pred HHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEE
Confidence 67889999996 688888732 1 2234455544432 211 1 135677899999999999999999
Q ss_pred EcCCC-CCCchHHHHHHhc-----CCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 64 LDTPL-CNGHTTSMDVLWT-----GTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 64 l~~~~-~~~g~~~lEAla~-----G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
+.|+. ++.+++++|||+| |+||++..... +..+. ..++. .|.+++.+...++++++
T Consensus 366 v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~------~~~l~----~~llv~P~d~~~la~ai~~~l~~~ 429 (726)
T PRK14501 366 LVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA------AAELA----EALLVNPNDIEGIAAAIKRALEMP 429 (726)
T ss_pred EecccccccCcccceEEEEcCCCCceEEEecccch------hHHhC----cCeEECCCCHHHHHHHHHHHHcCC
Confidence 98875 5779999999999 55666653221 11111 23332 47778887777777654
No 91
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.87 E-value=2e-08 Score=81.25 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=84.4
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla 80 (130)
.+.++.++.|++.|-| |-+....+.|+++ .++ + +-+.|.|..+ .++..+|..||+|||++.. +.+.++.||+.
T Consensus 296 ~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y--~-nvvly~~~~~-~~l~~ly~~~dlyLdin~~e~~~~al~eA~~ 369 (438)
T TIGR02919 296 HLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY--D-NVKLYPNITT-QKIQELYQTCDIYLDINHGNEILNAVRRAFE 369 (438)
T ss_pred HHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc--C-CcEEECCcCh-HHHHHHHHhccEEEEccccccHHHHHHHHHH
Confidence 5788999999999998 6433335788888 666 3 5666666554 4577899999999999874 67999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCce-ecCHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELI-ARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~v-a~~~~~y~~~a~~l~~d~ 129 (130)
.|+||++.+.......... -+.++ ..+.++++++..++++|+
T Consensus 370 ~G~pI~afd~t~~~~~~i~-------~g~l~~~~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 370 YNLLILGFEETAHNRDFIA-------SENIFEHNEVDQLISKLKDLLNDP 412 (438)
T ss_pred cCCcEEEEecccCCccccc-------CCceecCCCHHHHHHHHHHHhcCH
Confidence 9999999875432221110 02233 367899999999998886
No 92
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.84 E-value=2.9e-08 Score=77.23 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=70.5
Q ss_pred hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC------------CCCCchHHH
Q psy15363 9 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP------------LCNGHTTSM 76 (130)
Q Consensus 9 ~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~------------~~~~g~~~l 76 (130)
..|+.+|+++|. |+.++ ... ++|.|.|+++.+++..+|+. |+.|-+. .++.+..+.
T Consensus 187 ~~~~~~l~i~G~-g~~~~---------~~~-~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~ 254 (333)
T PRK09814 187 WSQGIKLTVFGP-NPEDL---------ENS-ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLS 254 (333)
T ss_pred cCCCCeEEEECC-Ccccc---------ccC-CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHH
Confidence 357899999996 45432 233 79999999999999998887 6544221 345678899
Q ss_pred HHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHh
Q psy15363 77 DVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 125 (130)
Q Consensus 77 EAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l 125 (130)
++|+||+|||+.+..... .++.. +-.+++.++.++..+...++
T Consensus 255 ~ymA~G~PVI~~~~~~~~-----~~V~~-~~~G~~v~~~~el~~~l~~~ 297 (333)
T PRK09814 255 LYLAAGLPVIVWSKAAIA-----DFIVE-NGLGFVVDSLEELPEIIDNI 297 (333)
T ss_pred HHHHCCCCEEECCCccHH-----HHHHh-CCceEEeCCHHHHHHHHHhc
Confidence 999999999998654332 33333 44466667888877777664
No 93
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.64 E-value=4.5e-07 Score=74.35 Aligned_cols=88 Identities=19% Similarity=0.115 Sum_probs=66.9
Q ss_pred ChHHHHHhhCCC----cEEEEeecCc----cc----HHHHHHHHHHc-------CCCCCCEEEecCCCHHHHHHhhcccc
Q psy15363 1 MSDIFVLKAVPN----SILWLLKFPA----VG----EANIQATAQAL-------GLDQHRILFSNVAAKEEHVRRGQLAD 61 (130)
Q Consensus 1 ~~w~~il~~~P~----a~l~i~g~~~----~~----~~~l~~~~~~~-------g~~~~rv~f~g~~~~~~~~~~~~~~D 61 (130)
++|.++|+++|+ ++|+.+|.+. +. +..+++++.+. |.. .-+.|.+.++.+++.++|+.||
T Consensus 305 ~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~-pv~~~~~~v~~~el~alYr~AD 383 (487)
T TIGR02398 305 NAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWT-PLQFFTRSLPYEEVSAWFAMAD 383 (487)
T ss_pred HHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCc-cEEEEcCCCCHHHHHHHHHhCC
Confidence 368899999996 6899998642 11 23444444432 333 4578889999999999999999
Q ss_pred EEEcCCC-CCCchHHHHHHhcCC----cEEecC
Q psy15363 62 VCLDTPL-CNGHTTSMDVLWTGT----PVVTLP 89 (130)
Q Consensus 62 v~l~~~~-~~~g~~~lEAla~G~----PvV~~~ 89 (130)
|++.|+- .+.+++..|+++|+. |+|...
T Consensus 384 V~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSe 416 (487)
T TIGR02398 384 VMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSE 416 (487)
T ss_pred EEEECccccccCcchhhHHhhhcCCCCCEEEec
Confidence 9988774 677999999999988 777654
No 94
>KOG1387|consensus
Probab=98.62 E-value=3.3e-07 Score=72.01 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=85.9
Q ss_pred CCCcEEEEeecC--cccH---HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCC
Q psy15363 10 VPNSILWLLKFP--AVGE---ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGT 83 (130)
Q Consensus 10 ~P~a~l~i~g~~--~~~~---~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~ 83 (130)
.++.+|+++|+- ..++ ..|+.+++++.++ ++|.|.-.+|.+++..+|+-|.+-+.+.. +.+|+++.|+||+|+
T Consensus 303 ~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGl 381 (465)
T KOG1387|consen 303 VSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGL 381 (465)
T ss_pred cCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCc
Confidence 366899999952 2233 3577889999998 88999999999999999999999999875 678999999999996
Q ss_pred cEEecCCCchhhhhHHHHHHhcCC-CCceecCHHHHHHHHHHhcc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGC-PELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~-~~~va~~~~~y~~~a~~l~~ 127 (130)
=.|+.++....-.+. ....|- .++.+.+.+||++..+++..
T Consensus 382 Ipi~h~SgGP~lDIV---~~~~G~~tGFla~t~~EYaE~iLkIv~ 423 (465)
T KOG1387|consen 382 IPIVHNSGGPLLDIV---TPWDGETTGFLAPTDEEYAEAILKIVK 423 (465)
T ss_pred eEEEeCCCCCceeee---eccCCccceeecCChHHHHHHHHHHHH
Confidence 555554332211111 112343 36999999999998887765
No 95
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.33 E-value=9.5e-06 Score=64.92 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=73.0
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCC-------------CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHH
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQ-------------HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMD 77 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~-------------~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lE 77 (130)
|+..+++.-.++...+.+++...+.|+.. +++.+.... .++..+|+.||+++.. .|+++.|
T Consensus 237 ~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~ADlvI~r----SGt~T~E 310 (396)
T TIGR03492 237 QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR--GAFAEILHWADLGIAM----AGTATEQ 310 (396)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEech--HhHHHHHHhCCEEEEC----cCHHHHH
Confidence 67777665433456677887777767642 135555443 5678899999999944 5577799
Q ss_pred HHhcCCcEEecCCCchhhhhHHHHHHhc----CCCCc-eecCHHHHHHHHHHhccCC
Q psy15363 78 VLWTGTPVVTLPGETLASRVAASQLATL----GCPEL-IARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 78 Ala~G~PvV~~~g~~~~~r~~~~~l~~~----g~~~~-va~~~~~y~~~a~~l~~d~ 129 (130)
++++|+|+|..+.+.+. ..+.++... |-... ...+.+...+...++.+|+
T Consensus 311 ~a~lg~P~Ilip~~~~q--~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 311 AVGLGKPVIQLPGKGPQ--FTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADP 365 (396)
T ss_pred HHHhCCCEEEEeCCCCH--HHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCH
Confidence 99999999999854332 244444432 32222 3355677888888887775
No 96
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=98.30 E-value=1.5e-06 Score=72.31 Aligned_cols=68 Identities=12% Similarity=0.027 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCC---CCC--EEEecCC-C------HHHHHHhhccccEEEcCCCC-CCchHHHHHHhcCCcEEecCCCc
Q psy15363 26 ANIQATAQALGLD---QHR--ILFSNVA-A------KEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGTPVVTLPGET 92 (130)
Q Consensus 26 ~~l~~~~~~~g~~---~~r--v~f~g~~-~------~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G~PvV~~~g~~ 92 (130)
+.+-..+++.++. .|| |+|.+.. + ..++..+|+.||+|+.|+.+ ++|.+.+|||+||+|||+++...
T Consensus 429 D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~g 508 (590)
T cd03793 429 DPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSG 508 (590)
T ss_pred CHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcc
Confidence 3455556665554 144 6665542 1 23466778999999998864 67999999999999999998764
Q ss_pred h
Q psy15363 93 L 93 (130)
Q Consensus 93 ~ 93 (130)
+
T Consensus 509 f 509 (590)
T cd03793 509 F 509 (590)
T ss_pred h
Confidence 4
No 97
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=98.17 E-value=2.3e-06 Score=54.40 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=44.8
Q ss_pred EEEcCCCC-CCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 62 VCLDTPLC-NGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 62 v~l~~~~~-~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
|+|.+... +.+..++|+|+||+|||+.....+.. ++ ..|...+..+|++++.++...+++||+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~-----~~-~~~~~~~~~~~~~el~~~i~~ll~~~~ 64 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLRE-----IF-EDGEHIITYNDPEELAEKIEYLLENPE 64 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHH-----Hc-CCCCeEEEECCHHHHHHHHHHHHCCHH
Confidence 35666543 45789999999999999976532211 11 124455667899999999999999874
No 98
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.10 E-value=4.4e-05 Score=60.21 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=56.4
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
++|.+.+++|..++ +..||+++ ..+|.+|+.||+++|+|+|..+-..- ....+..+...|..-.+.. +.+
T Consensus 288 ~~v~~~~~~p~~~l---l~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~~l~~~~~~~~ 360 (401)
T cd03784 288 DNVRVVDFVPHDWL---LPRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGPALDPRELTAE 360 (401)
T ss_pred CceEEeCCCCHHHH---hhhhheee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCCCCCcccCCHH
Confidence 68888999886554 66799998 34566899999999999999865322 2234555666776654432 566
Q ss_pred HHHHHHHHhccC
Q psy15363 117 EYQDIAIRLGTD 128 (130)
Q Consensus 117 ~y~~~a~~l~~d 128 (130)
+..+...++++|
T Consensus 361 ~l~~al~~~l~~ 372 (401)
T cd03784 361 RLAAALRRLLDP 372 (401)
T ss_pred HHHHHHHHHhCH
Confidence 666666665543
No 99
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.08 E-value=1.9e-05 Score=60.25 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=47.2
Q ss_pred EEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 16 WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 16 ~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
+++|.+.+..+.+++..+.. .++.+.+++ +++..+|..||+++. .+|.|+.|++++|+|+|+.+
T Consensus 204 vv~G~~~~~~~~l~~~~~~~----~~i~~~~~~--~~m~~lm~~aDl~Is----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 204 LVTGSSNPNLDELKKFAKEY----PNIILFIDV--ENMAELMNEADLAIG----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred EEECCCCcCHHHHHHHHHhC----CCEEEEeCH--HHHHHHHHHCCEEEE----CCchHHHHHHHcCCCEEEEE
Confidence 34554334455666665542 478888777 568888999999994 46699999999999999874
No 100
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.08 E-value=6.1e-05 Score=59.50 Aligned_cols=83 Identities=19% Similarity=0.323 Sum_probs=58.3
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
++|.+.+++|..+ ++..||+++. .+|..|++||+++|+|+|+.+...- ...-+..+...|....+.. +.+
T Consensus 275 ~~v~~~~~~p~~~---ll~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~l~~~g~g~~l~~~~~~~~ 347 (392)
T TIGR01426 275 PNVEVRQWVPQLE---ILKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGAD-QPMTARRIAELGLGRHLPPEEVTAE 347 (392)
T ss_pred CCeEEeCCCCHHH---HHhhCCEEEE---CCCchHHHHHHHhCCCEEecCCccc-HHHHHHHHHHCCCEEEeccccCCHH
Confidence 7899999998754 4678999982 3455689999999999999875433 2234455566677654432 456
Q ss_pred HHHHHHHHhccCC
Q psy15363 117 EYQDIAIRLGTDR 129 (130)
Q Consensus 117 ~y~~~a~~l~~d~ 129 (130)
++.+...++++|+
T Consensus 348 ~l~~ai~~~l~~~ 360 (392)
T TIGR01426 348 KLREAVLAVLSDP 360 (392)
T ss_pred HHHHHHHHHhcCH
Confidence 7777777777765
No 101
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.06 E-value=3.1e-05 Score=67.85 Aligned_cols=86 Identities=15% Similarity=0.066 Sum_probs=58.0
Q ss_pred hHHHHHhhCCCcE--EEEe--ecC----cccHHHHHHHH--------HHcCCC-CCCEEEec-CCCHHHHHHhhccccEE
Q psy15363 2 SDIFVLKAVPNSI--LWLL--KFP----AVGEANIQATA--------QALGLD-QHRILFSN-VAAKEEHVRRGQLADVC 63 (130)
Q Consensus 2 ~w~~il~~~P~a~--l~i~--g~~----~~~~~~l~~~~--------~~~g~~-~~rv~f~g-~~~~~~~~~~~~~~Dv~ 63 (130)
+|.+.|+++|+.+ ++++ ..+ .+..+.+++.+ .++|-. ..-|+++. .++.+++.++|+.||||
T Consensus 384 AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~ 463 (934)
T PLN03064 384 AFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVA 463 (934)
T ss_pred HHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEE
Confidence 6888999999854 5554 211 22333444333 233321 12366554 47899999999999999
Q ss_pred EcCC-CCCCchHHHHHHhc-----CCcEEe
Q psy15363 64 LDTP-LCNGHTTSMDVLWT-----GTPVVT 87 (130)
Q Consensus 64 l~~~-~~~~g~~~lEAla~-----G~PvV~ 87 (130)
|.|+ .++.+++..|+|+| |++|+.
T Consensus 464 lvTslrDGmNLva~Eyva~~~~~~GvLILS 493 (934)
T PLN03064 464 LVTSLRDGMNLVSYEFVACQDSKKGVLILS 493 (934)
T ss_pred EeCccccccCchHHHHHHhhcCCCCCeEEe
Confidence 9887 46779999999999 666664
No 102
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=7.4e-05 Score=59.24 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCch---hhhhHHHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL---ASRVAASQ 101 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~---~~r~~~~~ 101 (130)
.+.+++.-+++|+ +.+.++. +++..+|+.+|+++ .-.|++|+.|..++|+|+|-.+-... ....-|..
T Consensus 224 ~~~~~~~~~~~~~----~~v~~f~--~dm~~~~~~ADLvI---sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~ 294 (357)
T COG0707 224 LEELKSAYNELGV----VRVLPFI--DDMAALLAAADLVI---SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKF 294 (357)
T ss_pred HHHHHHHHhhcCc----EEEeeHH--hhHHHHHHhccEEE---eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHH
Confidence 3444444454443 6777776 56888999999998 13678999999999999998876544 34456777
Q ss_pred HHhcCCCCceec---CHHHHHHHHHHhccCCC
Q psy15363 102 LATLGCPELIAR---THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 102 l~~~g~~~~va~---~~~~y~~~a~~l~~d~e 130 (130)
+...|..-++.+ +.+.+.+...++.++||
T Consensus 295 l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~ 326 (357)
T COG0707 295 LEKAGAALVIRQSELTPEKLAELILRLLSNPE 326 (357)
T ss_pred HHhCCCEEEeccccCCHHHHHHHHHHHhcCHH
Confidence 877787766654 35788888888877653
No 103
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=0.00028 Score=56.72 Aligned_cols=121 Identities=20% Similarity=0.183 Sum_probs=80.3
Q ss_pred hHHHHHhhCCCcEEEEeecCcccH-HHHHHHHHHcCCCC------------CCEEEecCCCHHHHHHhhccccEEEc--C
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGE-ANIQATAQALGLDQ------------HRILFSNVAAKEEHVRRGQLADVCLD--T 66 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~-~~l~~~~~~~g~~~------------~rv~f~g~~~~~~~~~~~~~~Dv~l~--~ 66 (130)
+|.+++++.||..|+++.. -+++ +.+.++++++|+.- ..|.+...+ -|+..+|+.+||..- |
T Consensus 250 ~~~~l~~~~~~~llIlVPR-HpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGS 326 (419)
T COG1519 250 AHQALKKQFPNLLLILVPR-HPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM--GELGLLYGIADIAFVGGS 326 (419)
T ss_pred HHHHHHhhCCCceEEEecC-ChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH--hHHHHHHhhccEEEECCc
Confidence 5778889999999999985 4543 56778888887531 244444444 689999999999853 4
Q ss_pred CCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccC
Q psy15363 67 PLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 67 ~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
+--.||--.+|+.++|+|||+-+.-.-..-+...+++. |- .++.++ .+..+.++.+..+
T Consensus 327 lv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga-~~~v~~-~~~l~~~v~~l~~ 385 (419)
T COG1519 327 LVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GA-GLQVED-ADLLAKAVELLLA 385 (419)
T ss_pred ccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhc-CC-eEEECC-HHHHHHHHHHhcC
Confidence 43356666999999999999966543333344444432 21 244555 5566666555443
No 104
>KOG2941|consensus
Probab=97.92 E-value=9.4e-05 Score=58.42 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=83.9
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEE-ecCCCHHHHHHhhccccEE--EcCCCCC--CchHHHHHHhcCCc
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVC--LDTPLCN--GHTTSMDVLWTGTP 84 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f-~g~~~~~~~~~~~~~~Dv~--l~~~~~~--~g~~~lEAla~G~P 84 (130)
.|+...+|-| .||.++...+.++++.. ++|.| +++...+|++.+++.||+- |-|+..+ -++.+++-..||+|
T Consensus 291 lP~llciITG-KGPlkE~Y~~~I~~~~~--~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglP 367 (444)
T KOG2941|consen 291 LPSLLCIITG-KGPLKEKYSQEIHEKNL--QHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLP 367 (444)
T ss_pred CCcEEEEEcC-CCchhHHHHHHHHHhcc--cceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCc
Confidence 4755555555 58999999999999887 46666 5888899999999999976 5555443 58999999999999
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
|++.+-.+.-+ |-..|-++++-.|.+++.+...-|-+
T Consensus 368 vcA~~fkcl~E------LVkh~eNGlvF~Ds~eLa~ql~~lf~ 404 (444)
T KOG2941|consen 368 VCAVNFKCLDE------LVKHGENGLVFEDSEELAEQLQMLFK 404 (444)
T ss_pred eeeecchhHHH------HHhcCCCceEeccHHHHHHHHHHHHh
Confidence 99987664433 22358889999999988887766655
No 105
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.87 E-value=0.00011 Score=56.91 Aligned_cols=86 Identities=13% Similarity=0.264 Sum_probs=62.3
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCc-hhhhhHHHHHHhcCCCCceecCHHHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET-LASRVAASQLATLGCPELIARTHKEY 118 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~-~~~r~~~~~l~~~g~~~~va~~~~~y 118 (130)
+++.+.++.+ +++..+|..||+++.. +|.+|+.||+++|+|+|..+-.. .....-+..+...|....+....-+.
T Consensus 229 ~~v~~~~~~~-~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~~~ 304 (321)
T TIGR00661 229 ENVEIRRITT-DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKELRL 304 (321)
T ss_pred CCEEEEECCh-HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhHHH
Confidence 5777777666 6788899999999943 34578999999999999987642 24555677788888876665544466
Q ss_pred HHHHHHhccCC
Q psy15363 119 QDIAIRLGTDR 129 (130)
Q Consensus 119 ~~~a~~l~~d~ 129 (130)
++...+..+|+
T Consensus 305 ~~~~~~~~~~~ 315 (321)
T TIGR00661 305 LEAILDIRNMK 315 (321)
T ss_pred HHHHHhccccc
Confidence 66666655553
No 106
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.81 E-value=0.00045 Score=52.75 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=55.0
Q ss_pred CEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCc-hhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 41 RILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET-LASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~-~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
+|.+.+.. ..++..++..||+++.. +|-+|+.||+++|+|+|..+-.. ..+..-+..++..|+...+.. +.+
T Consensus 233 ni~~~~~~-~~~~~~~m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~ 308 (318)
T PF13528_consen 233 NIHVRPFS-TPDFAELMAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPE 308 (318)
T ss_pred CEEEeecC-hHHHHHHHHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHH
Confidence 44444332 25678889999999932 34577999999999999997654 456667888999999877642 445
Q ss_pred HHHHHH
Q psy15363 117 EYQDIA 122 (130)
Q Consensus 117 ~y~~~a 122 (130)
.+.+..
T Consensus 309 ~l~~~l 314 (318)
T PF13528_consen 309 RLAEFL 314 (318)
T ss_pred HHHHHH
Confidence 554443
No 107
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.79 E-value=0.00018 Score=57.46 Aligned_cols=117 Identities=19% Similarity=0.179 Sum_probs=71.7
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGT 83 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~ 83 (130)
.++.++.|+.++++...+....+.+++..+..+.. -.+.+.. .+-...++.||+.+ -.+||+++|++.+|+
T Consensus 210 ~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~-~~~~~~~----~~~~~~m~~ad~al----~~SGTaTLE~Al~g~ 280 (373)
T PF02684_consen 210 KLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPD-VSIVIIE----GESYDAMAAADAAL----AASGTATLEAALLGV 280 (373)
T ss_pred HHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCC-CeEEEcC----CchHHHHHhCcchh----hcCCHHHHHHHHhCC
Confidence 45677889999887764333344466666666543 3333332 12334677999988 567899999999999
Q ss_pred cEEecCCCchh-hhhHHHHH--HhcCCCCcee------------cCHHHHHHHHHHhccCC
Q psy15363 84 PVVTLPGETLA-SRVAASQL--ATLGCPELIA------------RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 84 PvV~~~g~~~~-~r~~~~~l--~~~g~~~~va------------~~~~~y~~~a~~l~~d~ 129 (130)
|.|+...-++- -.++..++ +..|++.+++ -+++...+.+.+++.|+
T Consensus 281 P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~ 341 (373)
T PF02684_consen 281 PMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENP 341 (373)
T ss_pred CEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCH
Confidence 97766443332 22333332 2345554433 25666777777777765
No 108
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.78 E-value=0.00019 Score=56.54 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=63.5
Q ss_pred HHHHhhCCCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHH-HHHhc
Q psy15363 4 IFVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSM-DVLWT 81 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~l-EAla~ 81 (130)
.++.+. ++..+++...+.+ ....+.+.++++ +++++..++++.++..+++.|++.+ -.+| .+. ||.++
T Consensus 207 ~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~----~~v~~~~~l~~~~~l~ll~~a~~vv----gdSs-GI~eEa~~l 276 (346)
T PF02350_consen 207 KALAER-QNVPVIFPLHNNPRGSDIIIEKLKKY----DNVRLIEPLGYEEYLSLLKNADLVV----GDSS-GIQEEAPSL 276 (346)
T ss_dssp HHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-----TTEEEE----HHHHHHHHHHESEEE----ESSH-HHHHHGGGG
T ss_pred HHHHhc-CCCcEEEEecCCchHHHHHHHHhccc----CCEEEECCCCHHHHHHHHhcceEEE----EcCc-cHHHHHHHh
Confidence 344444 7777777765323 344555555544 3999999999999999999999998 4455 567 99999
Q ss_pred CCcEEecC--CCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 82 GTPVVTLP--GETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 82 G~PvV~~~--g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
|+|+|+.+ |+...+|.. |-+-++..+.++-.+.+.++++
T Consensus 277 g~P~v~iR~~geRqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 277 GKPVVNIRDSGERQEGRER-------GSNVLVGTDPEAIIQAIEKALS 317 (346)
T ss_dssp T--EEECSSS-S-HHHHHT-------TSEEEETSSHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCHHHHhh-------cceEEeCCCHHHHHHHHHHHHh
Confidence 99999994 333334432 4444555566665555555543
No 109
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.72 E-value=0.00072 Score=53.53 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=52.3
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCc-eecCHHHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPEL-IARTHKEY 118 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~-va~~~~~y 118 (130)
++|.+.+.++..++..+++.||+++ -+++..+-||.++|+|||+..++ ..+|. .|-+-+ +-.+.++.
T Consensus 262 ~~v~l~~~l~~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~R-~e~~~-------~g~nvl~vg~~~~~I 329 (365)
T TIGR03568 262 PNFRLFKSLGQERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIGTR-QKGRL-------RADSVIDVDPDKEEI 329 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeecCC-chhhh-------hcCeEEEeCCCHHHH
Confidence 6899999999999999999999999 33322348999999999988642 22221 133334 44567766
Q ss_pred HHHHHHh
Q psy15363 119 QDIAIRL 125 (130)
Q Consensus 119 ~~~a~~l 125 (130)
.+.+.++
T Consensus 330 ~~a~~~~ 336 (365)
T TIGR03568 330 VKAIEKL 336 (365)
T ss_pred HHHHHHH
Confidence 6666553
No 110
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.00092 Score=55.08 Aligned_cols=82 Identities=20% Similarity=-0.037 Sum_probs=59.7
Q ss_pred HHHhhCCCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcC
Q psy15363 5 FVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTG 82 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G 82 (130)
.++++. .+++++|.+.+ .++.++.+++++. +++.+.-..+..-...+|..+|++|-|+.+ .+|.+-++||..|
T Consensus 318 ~~l~~~--~~~vilG~gd~~le~~~~~la~~~~---~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryG 392 (487)
T COG0297 318 ELLEQG--WQLVLLGTGDPELEEALRALASRHP---GRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYG 392 (487)
T ss_pred HHHHhC--ceEEEEecCcHHHHHHHHHHHHhcC---ceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcC
Confidence 344444 88999997422 2456677777664 567766666655567788999999999976 5799999999999
Q ss_pred CcEEecCCC
Q psy15363 83 TPVVTLPGE 91 (130)
Q Consensus 83 ~PvV~~~g~ 91 (130)
++.|+.+-.
T Consensus 393 tvpIv~~tG 401 (487)
T COG0297 393 TLPIVRETG 401 (487)
T ss_pred CcceEcccC
Confidence 777766533
No 111
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.49 E-value=0.0016 Score=51.37 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=53.7
Q ss_pred HHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCc----hhhhhHHHHHHhcCCCCceec---CHHHHHHHHH
Q psy15363 51 EEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET----LASRVAASQLATLGCPELIAR---THKEYQDIAI 123 (130)
Q Consensus 51 ~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~----~~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~ 123 (130)
+++..+|..||+++. .+|++|+.|++++|+|.|..+-.. .....-+..+...|....+.+ +.+...+...
T Consensus 244 ~~m~~~~~~adlvIs---r~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~ 320 (352)
T PRK12446 244 GELPDILAITDFVIS---RAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVE 320 (352)
T ss_pred hhHHHHHHhCCEEEE---CCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHH
Confidence 457788999999882 357899999999999999885431 234445666777777654433 4567777777
Q ss_pred HhccCC
Q psy15363 124 RLGTDR 129 (130)
Q Consensus 124 ~l~~d~ 129 (130)
++.+|+
T Consensus 321 ~ll~~~ 326 (352)
T PRK12446 321 ELSHNN 326 (352)
T ss_pred HHHcCH
Confidence 777664
No 112
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.38 E-value=0.00029 Score=49.37 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=51.9
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCch---hhhhHHHHHHhcCCCCceec---
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL---ASRVAASQLATLGCPELIAR--- 113 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~---~~r~~~~~l~~~g~~~~va~--- 113 (130)
.+|.+.++.+ ++..+++.||+.+. .+|+.|+.|++++|+|.|..+-... ....-+..+...|....+.+
T Consensus 55 ~~v~~~~~~~--~m~~~m~~aDlvIs---~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~ 129 (167)
T PF04101_consen 55 PNVKVFGFVD--NMAELMAAADLVIS---HAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESEL 129 (167)
T ss_dssp CCCEEECSSS--SHHHHHHHHSEEEE---CS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-
T ss_pred CcEEEEechh--hHHHHHHHcCEEEe---CCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccC
Confidence 5899999985 46677889999981 3566899999999999988765541 22223445555666544332
Q ss_pred CHHHHHHHHHHhccC
Q psy15363 114 THKEYQDIAIRLGTD 128 (130)
Q Consensus 114 ~~~~y~~~a~~l~~d 128 (130)
+.++..+...++.+|
T Consensus 130 ~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 130 NPEELAEAIEELLSD 144 (167)
T ss_dssp SCCCHHHHHHCHCCC
T ss_pred CHHHHHHHHHHHHcC
Confidence 245566666665554
No 113
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.31 E-value=0.0036 Score=51.82 Aligned_cols=85 Identities=9% Similarity=0.067 Sum_probs=54.7
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee---cCHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---RTHK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va---~~~~ 116 (130)
++|.+.+++|..+++. ...+++|+ ..+|..++.||+.+|+|+|..+--.-. ..-+..+...|....+. -+.+
T Consensus 346 ~Nv~i~~w~Pq~~lL~-hp~v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~DQ-~~Na~rv~~~G~G~~l~~~~~t~~ 420 (507)
T PHA03392 346 ANVLTQKWFPQRAVLK-HKNVKAFV---TQGGVQSTDEAIDALVPMVGLPMMGDQ-FYNTNKYVELGIGRALDTVTVSAA 420 (507)
T ss_pred CceEEecCCCHHHHhc-CCCCCEEE---ecCCcccHHHHHHcCCCEEECCCCccH-HHHHHHHHHcCcEEEeccCCcCHH
Confidence 7888899999877642 24688887 346678899999999999999743211 12234445566654332 1445
Q ss_pred HHHHHHHHhccCC
Q psy15363 117 EYQDIAIRLGTDR 129 (130)
Q Consensus 117 ~y~~~a~~l~~d~ 129 (130)
+..+...++++||
T Consensus 421 ~l~~ai~~vl~~~ 433 (507)
T PHA03392 421 QLVLAIVDVIENP 433 (507)
T ss_pred HHHHHHHHHhCCH
Confidence 5555555555553
No 114
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.30 E-value=0.0016 Score=52.52 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=57.0
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee---cCHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---RTHK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va---~~~~ 116 (130)
++++..+.+|..+ ++..||+++ ..+|.+|+.||+..|+|+|..+.. +-.-.-+..+...|.+..+. .+.+
T Consensus 284 ~n~~v~~~~p~~~---~l~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~l~~~ 356 (406)
T COG1819 284 DNVIVADYVPQLE---LLPRADAVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEELTEE 356 (406)
T ss_pred CceEEecCCCHHH---HhhhcCEEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCcccCCHH
Confidence 6788888888766 457999998 245678999999999999999765 22223456667788876554 3455
Q ss_pred HHHHHHHHhccC
Q psy15363 117 EYQDIAIRLGTD 128 (130)
Q Consensus 117 ~y~~~a~~l~~d 128 (130)
...+...++++|
T Consensus 357 ~l~~av~~vL~~ 368 (406)
T COG1819 357 RLRAAVNEVLAD 368 (406)
T ss_pred HHHHHHHHHhcC
Confidence 555555555444
No 115
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.21 E-value=0.0011 Score=53.94 Aligned_cols=83 Identities=12% Similarity=0.244 Sum_probs=48.4
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC--CchhhhhHHHHHHhcCCCCcee---cC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVAASQLATLGCPELIA---RT 114 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g--~~~~~r~~~~~l~~~g~~~~va---~~ 114 (130)
+++.+..++|+.++++ ...+++|+ ..+|-+++.||+++|+|+|+.+- +.. .-+..+...|....+. -+
T Consensus 323 ~n~~~~~W~PQ~~lL~-hp~v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~---~na~~~~~~G~g~~l~~~~~~ 395 (500)
T PF00201_consen 323 KNVLIVKWLPQNDLLA-HPRVKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQP---RNAARVEEKGVGVVLDKNDLT 395 (500)
T ss_dssp TTEEEESS--HHHHHT-STTEEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHH---HHHHHHHHTTSEEEEGGGC-S
T ss_pred ceEEEeccccchhhhh-cccceeee---eccccchhhhhhhccCCccCCCCcccCC---ccceEEEEEeeEEEEEecCCc
Confidence 6778888888877654 34466776 25667899999999999999863 322 2344556667754332 14
Q ss_pred HHHHHHHHHHhccCC
Q psy15363 115 HKEYQDIAIRLGTDR 129 (130)
Q Consensus 115 ~~~y~~~a~~l~~d~ 129 (130)
.++..+...++++|+
T Consensus 396 ~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 396 EEELRAAIREVLENP 410 (500)
T ss_dssp HHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhhh
Confidence 556666666665553
No 116
>PLN02167 UDP-glycosyltransferase family protein
Probab=96.98 E-value=0.0097 Score=48.85 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=30.9
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
+|..+.+++|..+++. ...++.|+ ..+|-++++||+++|+|+|+.+-
T Consensus 340 ~rg~v~~w~PQ~~iL~-h~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~ 386 (475)
T PLN02167 340 GRGLVCGWAPQVEILA-HKAIGGFV---SHCGWNSVLESLWFGVPIATWPM 386 (475)
T ss_pred cCeeeeccCCHHHHhc-CcccCeEE---eeCCcccHHHHHHcCCCEEeccc
Confidence 3445556666655432 22355566 23455799999999999999863
No 117
>PLN03004 UDP-glycosyltransferase
Probab=96.96 E-value=0.011 Score=48.30 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=35.0
Q ss_pred CCEEEecCCCHHHHHHhhccccE--EEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv--~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
.++++.+++|..++ ++.+++ |+ ..+|-++++||+++|||+|+.+-
T Consensus 334 ~g~~v~~W~PQ~~i---L~H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~ 380 (451)
T PLN03004 334 KGMVVKSWAPQVPV---LNHKAVGGFV---THCGWNSILEAVCAGVPMVAWPL 380 (451)
T ss_pred CcEEEEeeCCHHHH---hCCCccceEe---ccCcchHHHHHHHcCCCEEeccc
Confidence 56788889988775 456776 55 24566899999999999999974
No 118
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.004 Score=49.71 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=57.0
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHH-HHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQA-TAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTG 82 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~-~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G 82 (130)
.++.+++|+.++++--.+ ...+.++. ..+..... -.+++.+.. -...+..||+.| -.+||+++|++.+|
T Consensus 214 ~~l~~~~~~~~~vlp~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~a~~~aD~al----~aSGT~tLE~aL~g 283 (381)
T COG0763 214 QELKARYPDLKFVLPLVN-AKYRRIIEEALKWEVAG-LSLILIDGE----KRKAFAAADAAL----AASGTATLEAALAG 283 (381)
T ss_pred HHHHhhCCCceEEEecCc-HHHHHHHHHHhhccccC-ceEEecCch----HHHHHHHhhHHH----HhccHHHHHHHHhC
Confidence 445568899998776543 33233333 33333321 234444433 234567899887 56789999999999
Q ss_pred CcEEecCCCchhhh-hHHHH--HHhcCCCCceec
Q psy15363 83 TPVVTLPGETLASR-VAASQ--LATLGCPELIAR 113 (130)
Q Consensus 83 ~PvV~~~g~~~~~r-~~~~~--l~~~g~~~~va~ 113 (130)
+|.|....-.+... +..-. +...+++.++++
T Consensus 284 ~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~ 317 (381)
T COG0763 284 TPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAG 317 (381)
T ss_pred CCEEEEEeccHHHHHHHHHhccCCcccchHHhcC
Confidence 99887654444333 22211 133466655543
No 119
>PLN02562 UDP-glycosyltransferase
Probab=96.94 E-value=0.013 Score=47.76 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=32.7
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
+|+.+.+++|+.+++.. ..+-.|+ ..+|-++++||+++|+|+|+.+-
T Consensus 328 ~~~~v~~w~PQ~~iL~h-~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~ 374 (448)
T PLN02562 328 KQGKVVSWAPQLEVLKH-QAVGCYL---THCGWNSTMEAIQCQKRLLCYPV 374 (448)
T ss_pred cCEEEEecCCHHHHhCC-CccceEE---ecCcchhHHHHHHcCCCEEeCCc
Confidence 57777788887765431 2233455 24556889999999999999863
No 120
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=96.89 E-value=0.0038 Score=47.19 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=51.4
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~ 81 (130)
...+.+..|+.+|++.-+|......-.+...+. +.. +++.+....+-.+ ++..||.++ --.+++-+||+.+
T Consensus 146 l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---Ll~~s~~Vv----tinStvGlEAll~ 217 (269)
T PF05159_consen 146 LESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLP-NVVIIDDDVNLYE---LLEQSDAVV----TINSTVGLEALLH 217 (269)
T ss_pred HHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCC-CeEEECCCCCHHH---HHHhCCEEE----EECCHHHHHHHHc
Confidence 345677889999998887421101111333333 332 5566666665444 467899987 3346889999999
Q ss_pred CCcEEecCC
Q psy15363 82 GTPVVTLPG 90 (130)
Q Consensus 82 G~PvV~~~g 90 (130)
|+||+++..
T Consensus 218 gkpVi~~G~ 226 (269)
T PF05159_consen 218 GKPVIVFGR 226 (269)
T ss_pred CCceEEecC
Confidence 999999743
No 121
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.88 E-value=0.0068 Score=47.45 Aligned_cols=89 Identities=16% Similarity=-0.003 Sum_probs=55.3
Q ss_pred HHHHHhhC--CCcEEEEeecCccc-HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH
Q psy15363 3 DIFVLKAV--PNSILWLLKFPAVG-EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL 79 (130)
Q Consensus 3 w~~il~~~--P~a~l~i~g~~~~~-~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl 79 (130)
|+++.+.. .+.+++++|+++.. .+..++..+... ....+.+.|..+-.++.++++.||+|+ ...+|.+= =|-
T Consensus 204 fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~-~~~~~~l~g~~sL~el~ali~~a~l~v--~nDSGp~H--lAa 278 (352)
T PRK10422 204 FSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQ-TPPVTALAGKTTFPELGALIDHAQLFI--GVDSAPAH--IAA 278 (352)
T ss_pred HHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcC-CCccccccCCCCHHHHHHHHHhCCEEE--ecCCHHHH--HHH
Confidence 55555443 25788888753222 222344443322 213466789999999999999999998 22333222 356
Q ss_pred hcCCcEEecCCCchhhh
Q psy15363 80 WTGTPVVTLPGETLASR 96 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r 96 (130)
|+|+|+|++-|.....+
T Consensus 279 A~g~P~v~lfGpt~p~~ 295 (352)
T PRK10422 279 AVNTPLICLFGATDHIF 295 (352)
T ss_pred HcCCCEEEEECCCCccc
Confidence 88999999977654333
No 122
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.75 E-value=0.023 Score=45.47 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=78.9
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHH-HHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATA-QALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~-~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
...+|++++|+..++.--++. +.+++.. ..++-. +||+++.++...++..++..|-+.+ -.+|.--=||-.
T Consensus 227 al~~i~~~~~~~~viyp~H~~---~~v~e~~~~~L~~~-~~v~li~pl~~~~f~~L~~~a~~il----tDSGgiqEEAp~ 298 (383)
T COG0381 227 ALREIAEEYPDVIVIYPVHPR---PRVRELVLKRLKNV-ERVKLIDPLGYLDFHNLMKNAFLIL----TDSGGIQEEAPS 298 (383)
T ss_pred HHHHHHHhCCCceEEEeCCCC---hhhhHHHHHHhCCC-CcEEEeCCcchHHHHHHHHhceEEE----ecCCchhhhHHh
Confidence 356788889888876655432 5566654 566654 7899999999999999999997776 334455789999
Q ss_pred cCCcEEecCCCc-hhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGET-LASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~-~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
.|+||++++..+ ...++.+ |-.-++-.+.+..++.+.++++|+
T Consensus 299 lg~Pvl~lR~~TERPE~v~a------gt~~lvg~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 299 LGKPVLVLRDTTERPEGVEA------GTNILVGTDEENILDAATELLEDE 342 (383)
T ss_pred cCCcEEeeccCCCCccceec------CceEEeCccHHHHHHHHHHHhhCh
Confidence 999999996432 2344433 333455556666666676666664
No 123
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.69 E-value=0.015 Score=43.91 Aligned_cols=89 Identities=18% Similarity=0.105 Sum_probs=58.6
Q ss_pred HHHHHhhCC--CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 3 DIFVLKAVP--NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 3 w~~il~~~P--~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
|.++.+... +.+++++|+ +.+++..+++.+..+ ..+-+.+.|..+-.|+..+++.||+++.+ .+ |..-+ |.+
T Consensus 142 ~~~l~~~l~~~~~~ivl~g~-~~e~~~~~~i~~~~~-~~~~~~~~~~~~l~e~~~li~~~~l~I~~--Ds-g~~Hl-A~a 215 (279)
T cd03789 142 FAALADRLLARGARVVLTGG-PAERELAEEIAAALG-GPRVVNLAGKTSLRELAALLARADLVVTN--DS-GPMHL-AAA 215 (279)
T ss_pred HHHHHHHHHHCCCEEEEEec-hhhHHHHHHHHHhcC-CCccccCcCCCCHHHHHHHHHhCCEEEee--CC-HHHHH-HHH
Confidence 444444432 678888885 345555666555544 22446678888889999999999999832 22 33333 358
Q ss_pred cCCcEEecCCCchhhhh
Q psy15363 81 TGTPVVTLPGETLASRV 97 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~ 97 (130)
.|+|+|+.-|.....++
T Consensus 216 ~~~p~i~l~g~~~~~~~ 232 (279)
T cd03789 216 LGTPTVALFGPTDPART 232 (279)
T ss_pred cCCCEEEEECCCCcccc
Confidence 99999999776554443
No 124
>PLN02173 UDP-glucosyl transferase family protein
Probab=96.64 E-value=0.013 Score=47.83 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=48.8
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHH-hcCCCCcee------
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA-TLGCPELIA------ 112 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~-~~g~~~~va------ 112 (130)
+++.+.+++|..+++. ...+..|+ ..+|.++++||+++|+|+|+.+--.- ...-+.++. ..|+.--+.
T Consensus 317 ~~~~i~~W~PQ~~iL~-H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~D-Q~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSPQLQVLS-NKAIGCFM---THCGWNSTMEGLSLGVPMVAMPQWTD-QPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCCHHHHhC-CCccceEE---ecCccchHHHHHHcCCCEEecCchhc-chHHHHHHHHHhCceEEEeecccCC
Confidence 5677788888766543 12234555 24567899999999999999973211 112223332 223332111
Q ss_pred -cCHHHHHHHHHHhccCC
Q psy15363 113 -RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 113 -~~~~~y~~~a~~l~~d~ 129 (130)
-+.++..+...++..|+
T Consensus 392 ~~~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGE 409 (449)
T ss_pred cccHHHHHHHHHHHhcCC
Confidence 14566666666666554
No 125
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.59 E-value=0.042 Score=46.55 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=43.9
Q ss_pred HhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC-CCchhhhhHHHHHH----hcCC----------CCce----ecCH
Q psy15363 55 RRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP-GETLASRVAASQLA----TLGC----------PELI----ARTH 115 (130)
Q Consensus 55 ~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~-g~~~~~r~~~~~l~----~~g~----------~~~v----a~~~ 115 (130)
.+++.||+.| -.+||+++|++.+|+|.|+.. -....-.++.-+++ ..++ ||++ .-++
T Consensus 484 ~~m~aaD~aL----aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 484 ELMRECDCAL----AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HHHHhcCeee----ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 5677888888 567899999999999977654 33222223333333 2333 4677 2346
Q ss_pred HHHHHHHHHhccCC
Q psy15363 116 KEYQDIAIRLGTDR 129 (130)
Q Consensus 116 ~~y~~~a~~l~~d~ 129 (130)
+...+. .+++.|+
T Consensus 560 e~La~~-l~lL~d~ 572 (608)
T PRK01021 560 EEVAAA-LDILKTS 572 (608)
T ss_pred HHHHHH-HHHhcCH
Confidence 666654 5777765
No 126
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.56 E-value=0.017 Score=45.06 Aligned_cols=85 Identities=14% Similarity=0.009 Sum_probs=55.9
Q ss_pred HHHHHhhC--CCcEEEEeecCcccHHHHHHHHHHcCCC-CCC-EEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHH
Q psy15363 3 DIFVLKAV--PNSILWLLKFPAVGEANIQATAQALGLD-QHR-ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDV 78 (130)
Q Consensus 3 w~~il~~~--P~a~l~i~g~~~~~~~~l~~~~~~~g~~-~~r-v~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEA 78 (130)
|+++.+.. .+.+++++|+ +.+++..++..+..+-. ..+ +.+.|..+-.++.++++.||+++ ...+|.+ ==|
T Consensus 202 ~a~l~~~l~~~~~~vvl~Gg-~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I--~nDTGp~--HlA 276 (348)
T PRK10916 202 YAELAQQLIDEGYQVVLFGS-AKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIV--TNDSGLM--HVA 276 (348)
T ss_pred HHHHHHHHHHCCCeEEEEeC-HHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHhCCEEE--ecCChHH--HHH
Confidence 66666543 3678888885 34555555554443321 023 56778888899999999999998 2222222 236
Q ss_pred HhcCCcEEecCCCc
Q psy15363 79 LWTGTPVVTLPGET 92 (130)
Q Consensus 79 la~G~PvV~~~g~~ 92 (130)
-|.|+|+|++-|..
T Consensus 277 aA~g~P~valfGpt 290 (348)
T PRK10916 277 AALNRPLVALYGPS 290 (348)
T ss_pred HHhCCCEEEEECCC
Confidence 78999999997754
No 127
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.54 E-value=0.033 Score=45.90 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=33.7
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
..+++.+++|..+++. ...++.|+ ..+|-++++||+++|+|+|+.+-
T Consensus 343 ~g~~v~~w~PQ~~vL~-h~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 343 RGLVIRGWAPQVAILS-HRAVGAFL---THCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred CCEEecCCCCHHHHhc-CCCcCeEE---ecCCchHHHHHHHcCCCEEeCCc
Confidence 3466778888766543 13467776 24556899999999999999963
No 128
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.50 E-value=0.083 Score=42.96 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=65.5
Q ss_pred HHHHHHHHcCCCCCCEEE-ecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhc
Q psy15363 27 NIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATL 105 (130)
Q Consensus 27 ~l~~~~~~~g~~~~rv~f-~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~ 105 (130)
..++..+...- ++++++ .+..+..|+..+++.||+++.+-- -+++=|+.+|+|+|...-+ .=..++++.+
T Consensus 295 ~~~~l~~~~~~-~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl----Ha~I~a~~~gvP~i~i~Y~----~K~~~~~~~l 365 (426)
T PRK10017 295 VALNLRQHVSD-PARYHVVMDELNDLEMGKILGACELTVGTRL----HSAIISMNFGTPAIAINYE----HKSAGIMQQL 365 (426)
T ss_pred HHHHHHHhccc-ccceeEecCCCChHHHHHHHhhCCEEEEecc----hHHHHHHHcCCCEEEeeeh----HHHHHHHHHc
Confidence 34455555543 255544 344455688899999999985432 3578899999999998643 3456788999
Q ss_pred CCCCceec----CHHHHHHHHHHhccCC
Q psy15363 106 GCPELIAR----THKEYQDIAIRLGTDR 129 (130)
Q Consensus 106 g~~~~va~----~~~~y~~~a~~l~~d~ 129 (130)
|+++++.+ +.++.++...++.+|.
T Consensus 366 g~~~~~~~~~~l~~~~Li~~v~~~~~~r 393 (426)
T PRK10017 366 GLPEMAIDIRHLLDGSLQAMVADTLGQL 393 (426)
T ss_pred CCccEEechhhCCHHHHHHHHHHHHhCH
Confidence 99998542 5677888888877764
No 129
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.50 E-value=0.023 Score=43.98 Aligned_cols=87 Identities=16% Similarity=0.023 Sum_probs=56.3
Q ss_pred HHHHHhhC--CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 3 DIFVLKAV--PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 3 w~~il~~~--P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
|+++.+.. .+..+++.|+ +.+++..++..+.. ....+.+.|..+-.++.++++.||+++ ...+|.+ ==|-|
T Consensus 196 ~~~li~~l~~~~~~ivl~G~-~~e~~~~~~i~~~~--~~~~~~l~g~~sL~el~ali~~a~l~I--~~DSGp~--HlAaA 268 (334)
T TIGR02195 196 YAELAKRLIDQGYQVVLFGS-AKDHPAGNEIEALL--PGELRNLAGETSLDEAVDLIALAKAVV--TNDSGLM--HVAAA 268 (334)
T ss_pred HHHHHHHHHHCCCEEEEEEC-hhhHHHHHHHHHhC--CcccccCCCCCCHHHHHHHHHhCCEEE--eeCCHHH--HHHHH
Confidence 55555443 3578888885 34555555544432 213345789889899999999999998 2222222 23668
Q ss_pred cCCcEEecCCCchhhh
Q psy15363 81 TGTPVVTLPGETLASR 96 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r 96 (130)
.|+|+|++-|.....+
T Consensus 269 ~~~P~i~lfG~t~p~~ 284 (334)
T TIGR02195 269 LNRPLVALYGSTSPDF 284 (334)
T ss_pred cCCCEEEEECCCChhh
Confidence 9999999977654333
No 130
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.48 E-value=0.022 Score=44.29 Aligned_cols=86 Identities=15% Similarity=0.013 Sum_probs=54.1
Q ss_pred HHHHHhhC--CCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH
Q psy15363 3 DIFVLKAV--PNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL 79 (130)
Q Consensus 3 w~~il~~~--P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl 79 (130)
|.++.+.. .+..++++|++.. +++..++..+..+-. .-+.+.|..+-.|+.++++.||+++. ..+|. +==|-
T Consensus 202 ~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~-~~~~l~g~~sL~el~ali~~a~l~Vs--~DSGp--~HlAa 276 (344)
T TIGR02201 202 FSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTP-RVTSLAGKLTLPQLAALIDHARLFIG--VDSVP--MHMAA 276 (344)
T ss_pred HHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCC-cccccCCCCCHHHHHHHHHhCCEEEe--cCCHH--HHHHH
Confidence 55555433 3577888885322 222334433332221 23557899999999999999999982 23332 23377
Q ss_pred hcCCcEEecCCCch
Q psy15363 80 WTGTPVVTLPGETL 93 (130)
Q Consensus 80 a~G~PvV~~~g~~~ 93 (130)
|+|+|+|++-|...
T Consensus 277 A~g~p~v~Lfgpt~ 290 (344)
T TIGR02201 277 ALGTPLVALFGPSK 290 (344)
T ss_pred HcCCCEEEEECCCC
Confidence 89999999977543
No 131
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.44 E-value=0.022 Score=46.59 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=34.1
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
+|....+++|..+++. ...+..|+ ..+|-++++||+++|+|+|+.+-
T Consensus 324 ~~g~v~~w~PQ~~iL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~ 370 (451)
T PLN02410 324 GRGYIVKWAPQKEVLS-HPAVGGFW---SHCGWNSTLESIGEGVPMICKPF 370 (451)
T ss_pred CCeEEEccCCHHHHhC-CCccCeee---ecCchhHHHHHHHcCCCEEeccc
Confidence 6777778888777643 23355566 23455799999999999999964
No 132
>PLN02448 UDP-glycosyltransferase family protein
Probab=96.42 E-value=0.024 Score=46.35 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=29.0
Q ss_pred CEEEecCCCHHHHHHhhccccE--EEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 41 RILFSNVAAKEEHVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv--~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
|+.+.+++|..+++. ..++ |+ ..+|-++++||+++|+|+|+.+-
T Consensus 324 ~~~v~~w~pQ~~iL~---h~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~ 369 (459)
T PLN02448 324 MGLVVPWCDQLKVLC---HSSVGGFW---THCGWNSTLEAVFAGVPMLTFPL 369 (459)
T ss_pred CEEEeccCCHHHHhc---cCccceEE---ecCchhHHHHHHHcCCCEEeccc
Confidence 455555555554432 3333 44 24566899999999999999974
No 133
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=96.34 E-value=0.1 Score=43.18 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=50.8
Q ss_pred CCEEEecCCCHHHHHHhhccccE--EEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHH-HhcCCCCcee----
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQL-ATLGCPELIA---- 112 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv--~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l-~~~g~~~~va---- 112 (130)
..+++.+++|+.+++ ....+ |+ ..+|-++++||+++|+|+|+.+--.- ...-+..+ ...|+.-.+.
T Consensus 338 rg~vv~~W~PQ~~iL---~h~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~D-Q~~na~~~~~~~g~gv~~~~~~~ 410 (481)
T PLN02992 338 RGFVVPSWAPQAEIL---AHQAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAE-QNMNAALLSDELGIAVRSDDPKE 410 (481)
T ss_pred CCEEEeecCCHHHHh---CCcccCeeE---ecCchhHHHHHHHcCCCEEecCccch-hHHHHHHHHHHhCeeEEecCCCC
Confidence 458888999987764 34444 55 34567899999999999999974211 11223333 3556553332
Q ss_pred -cCHHHHHHHHHHhccCC
Q psy15363 113 -RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 113 -~~~~~y~~~a~~l~~d~ 129 (130)
-+.++..+...++..|+
T Consensus 411 ~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 411 VISRSKIEALVRKVMVEE 428 (481)
T ss_pred cccHHHHHHHHHHHhcCC
Confidence 14456666666665543
No 134
>PLN02210 UDP-glucosyl transferase
Probab=96.31 E-value=0.071 Score=43.64 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=31.5
Q ss_pred CCEEEecCCCHHHHHHhhcccc--EEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLAD--VCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~D--v~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
+|..+.+++|..+++ +.+. .|+ ..+|-++++||+++|+|+|+.+-
T Consensus 324 ~~g~v~~w~PQ~~iL---~h~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~ 370 (456)
T PLN02210 324 GQGVVLEWSPQEKIL---SHMAISCFV---THCGWNSTIETVVAGVPVVAYPS 370 (456)
T ss_pred CCeEEEecCCHHHHh---cCcCcCeEE---eeCCcccHHHHHHcCCCEEeccc
Confidence 444566778776654 3444 666 23455789999999999999964
No 135
>PLN02555 limonoid glucosyltransferase
Probab=96.28 E-value=0.03 Score=46.18 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=33.8
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
+|+.+.+++|+.+++. ...+..|+ ..+|-++++||+++|+|+|+.+-
T Consensus 337 ~~g~v~~W~PQ~~iL~-H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~ 383 (480)
T PLN02555 337 DKGKIVQWCPQEKVLA-HPSVACFV---THCGWNSTMEALSSGVPVVCFPQ 383 (480)
T ss_pred CceEEEecCCHHHHhC-CCccCeEE---ecCCcchHHHHHHcCCCEEeCCC
Confidence 5666677777666542 24566666 24456899999999999999964
No 136
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.27 E-value=0.092 Score=40.72 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=46.4
Q ss_pred EeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCc--EEecCC
Q psy15363 17 LLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTP--VVTLPG 90 (130)
Q Consensus 17 i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~P--vV~~~g 90 (130)
++|...+....+++.++++ +++.+.-.. +++..++..||..+ -.+|.|+.||+..|+| +++...
T Consensus 191 V~gs~~p~l~~l~k~~~~~----~~i~~~~~~--~dma~LMke~d~aI----~AaGstlyEa~~lgvP~l~l~~a~ 256 (318)
T COG3980 191 VVGSSNPTLKNLRKRAEKY----PNINLYIDT--NDMAELMKEADLAI----SAAGSTLYEALLLGVPSLVLPLAE 256 (318)
T ss_pred EecCCCcchhHHHHHHhhC----CCeeeEecc--hhHHHHHHhcchhe----eccchHHHHHHHhcCCceEEeeec
Confidence 4554345556666666653 677766544 56778889999988 6689999999999999 666644
No 137
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.26 E-value=0.034 Score=42.68 Aligned_cols=88 Identities=18% Similarity=0.001 Sum_probs=55.9
Q ss_pred hHHHHHhhCC--CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH
Q psy15363 2 SDIFVLKAVP--NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P--~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl 79 (130)
-|+++.+... +..++++++++.+++..++..+..+ ...+.|..+-.++.++++.||+++ ...+|.+= =|-
T Consensus 199 ~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~----~~~l~g~~sL~el~ali~~a~l~I--~~DSgp~H--lAa 270 (319)
T TIGR02193 199 RWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALP----GAVVLPKMSLAEVAALLAGADAVV--GVDTGLTH--LAA 270 (319)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCC----CCeecCCCCHHHHHHHHHcCCEEE--eCCChHHH--HHH
Confidence 3666665543 4677777533234444555544322 235778889899999999999998 22232222 255
Q ss_pred hcCCcEEecCCCchhhhh
Q psy15363 80 WTGTPVVTLPGETLASRV 97 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~ 97 (130)
++|+|+|++-|.....++
T Consensus 271 a~g~P~i~lfg~t~p~~~ 288 (319)
T TIGR02193 271 ALDKPTVTLYGATDPGRT 288 (319)
T ss_pred HcCCCEEEEECCCCHhhc
Confidence 789999999876655554
No 138
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=96.23 E-value=0.018 Score=42.41 Aligned_cols=90 Identities=23% Similarity=0.158 Sum_probs=52.6
Q ss_pred HHHHHhhCCC--cEEEEeecCccc-HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH
Q psy15363 3 DIFVLKAVPN--SILWLLKFPAVG-EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL 79 (130)
Q Consensus 3 w~~il~~~P~--a~l~i~g~~~~~-~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl 79 (130)
|.++.+...+ ..++++|++ .+ .+.+.+.+.+ +.....+.+.|..+-.++..+++.||+++. ..+| .+==|.
T Consensus 126 ~~~l~~~l~~~~~~vvl~g~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~e~~ali~~a~~~I~--~Dtg--~~HlA~ 199 (247)
T PF01075_consen 126 WAELIERLKERGYRVVLLGGP-EEQEKEIADQIAA-GLQNPVINLAGKTSLRELAALISRADLVIG--NDTG--PMHLAA 199 (247)
T ss_dssp HHHHHHHHCCCT-EEEE--SS-HHHHHHHHHHHHT-THTTTTEEETTTS-HHHHHHHHHTSSEEEE--ESSH--HHHHHH
T ss_pred HHHHHHHHHhhCceEEEEccc-hHHHHHHHHHHHH-hcccceEeecCCCCHHHHHHHHhcCCEEEe--cCCh--HHHHHH
Confidence 6666666653 467888853 33 2222222222 332136888899999999999999999982 1221 233477
Q ss_pred hcCCcEEecCCCchhhhhH
Q psy15363 80 WTGTPVVTLPGETLASRVA 98 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~ 98 (130)
+.|+|+|++-|.....+++
T Consensus 200 a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 200 ALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HTT--EEEEESSS-HHHHS
T ss_pred HHhCCEEEEecCCCHHHhC
Confidence 8999999998876655554
No 139
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.21 E-value=0.012 Score=46.53 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=33.2
Q ss_pred HhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHH---hcCCCCce
Q psy15363 55 RRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLA---TLGCPELI 111 (130)
Q Consensus 55 ~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~---~~g~~~~v 111 (130)
.+|+.||+.+ ..+|++++|++.+|+|.|....-++.+..-+..+- ..|++.++
T Consensus 231 ~~m~~aDlal----~~SGT~TLE~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii 286 (347)
T PRK14089 231 KALLEAEFAF----ICSGTATLEAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIF 286 (347)
T ss_pred HHHHhhhHHH----hcCcHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHh
Confidence 4566777777 56789999999999998875433333332233333 44555544
No 140
>PLN03007 UDP-glucosyltransferase family protein
Probab=96.20 E-value=0.086 Score=43.38 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=31.5
Q ss_pred CCEEEecCCCHHHHHHhhccccE--EEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv--~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
.++++.+++|..+++ ..+++ |+ ..+|-++++||+++|+|+|+.+
T Consensus 345 ~g~~v~~w~PQ~~iL---~h~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 345 KGLIIRGWAPQVLIL---DHQATGGFV---THCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred CCEEEecCCCHHHHh---ccCccceee---ecCcchHHHHHHHcCCCeeecc
Confidence 456777777766543 34444 55 2445689999999999999996
No 141
>PLN02670 transferase, transferring glycosyl groups
Probab=96.19 E-value=0.11 Score=42.72 Aligned_cols=82 Identities=10% Similarity=0.012 Sum_probs=45.8
Q ss_pred EEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee-------cC
Q psy15363 42 ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA-------RT 114 (130)
Q Consensus 42 v~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va-------~~ 114 (130)
+++.+++|..+++. ...+..|+ ..+|-++++||+++|+|+|+.+--. -....+.++...|+.--+. -+
T Consensus 341 ~vv~~W~PQ~~IL~-H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~-DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQVKILS-HESVGGFL---THCGWNSVVEGLGFGRVLILFPVLN-EQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCHHHHhc-Ccccceee---ecCCcchHHHHHHcCCCEEeCcchh-ccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 55567777766532 12233355 2446689999999999999996311 1122333444455553221 13
Q ss_pred HHHHHHHHHHhccC
Q psy15363 115 HKEYQDIAIRLGTD 128 (130)
Q Consensus 115 ~~~y~~~a~~l~~d 128 (130)
.++..+.+.++..|
T Consensus 416 ~e~i~~av~~vm~~ 429 (472)
T PLN02670 416 SDSVAESVRLAMVD 429 (472)
T ss_pred HHHHHHHHHHHhcC
Confidence 45555555555544
No 142
>PLN02554 UDP-glycosyltransferase family protein
Probab=96.14 E-value=0.018 Score=47.38 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=32.1
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
+|+.+.+++|..+++. ...+..|+ ..+|-++++||+++|+|+|+.+-
T Consensus 342 ~~g~v~~W~PQ~~iL~-H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~ 388 (481)
T PLN02554 342 DIGKVIGWAPQVAVLA-KPAIGGFV---THCGWNSILESLWFGVPMAAWPL 388 (481)
T ss_pred cCceEEeeCCHHHHhC-CcccCccc---ccCccchHHHHHHcCCCEEecCc
Confidence 4555667777665542 24455555 23456799999999999999963
No 143
>PLN02208 glycosyltransferase family protein
Probab=96.06 E-value=0.047 Score=44.58 Aligned_cols=82 Identities=6% Similarity=0.045 Sum_probs=46.5
Q ss_pred CEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC--CchhhhhHHHH-HHhcCCCCcee-----
Q psy15363 41 RILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVAASQ-LATLGCPELIA----- 112 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g--~~~~~r~~~~~-l~~~g~~~~va----- 112 (130)
.+++.+++|+.+++. ......|+ ..+|-++++||+++|+|+|+.+- +.. ..+.+ .+..|+.--+.
T Consensus 312 g~~v~~W~PQ~~iL~-H~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~---~na~~~~~~~g~gv~~~~~~~~ 384 (442)
T PLN02208 312 GVVWGGWVQQPLILD-HPSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQV---LFTRLMTEEFEVSVEVSREKTG 384 (442)
T ss_pred CcEeeccCCHHHHhc-CCccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhH---HHHHHHHHHhceeEEeccccCC
Confidence 455567777666543 12233455 23456899999999999999963 322 22233 23345543221
Q ss_pred -cCHHHHHHHHHHhccCC
Q psy15363 113 -RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 113 -~~~~~y~~~a~~l~~d~ 129 (130)
-+.++..+...++.+|+
T Consensus 385 ~~~~~~l~~ai~~~m~~~ 402 (442)
T PLN02208 385 WFSKESLSNAIKSVMDKD 402 (442)
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 14556666666666543
No 144
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=96.05 E-value=0.13 Score=42.13 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=47.8
Q ss_pred HHHHhhCCCcEEEEeecCcc-------c-HHH---HHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccE--EEcCCCCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAV-------G-EAN---IQATAQALGLDQHRILFSNVAAKEEHVRRGQLADV--CLDTPLCN 70 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~-------~-~~~---l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv--~l~~~~~~ 70 (130)
+.-+++.|.-.||.+..+.. . .+. .+.+.++ +. +|..+.+++|..+++ +...+ |+ ..+
T Consensus 283 a~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~--~~-~~g~v~~W~PQ~~iL---~h~~vg~fv---tH~ 353 (455)
T PLN02152 283 ARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE--LE-EVGMIVSWCSQIEVL---RHRAVGCFV---THC 353 (455)
T ss_pred HHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh--cc-CCeEEEeeCCHHHHh---CCcccceEE---eeC
Confidence 45566677777777763110 0 001 1122222 33 677788889877654 45554 44 245
Q ss_pred CchHHHHHHhcCCcEEecCC
Q psy15363 71 GHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 71 ~g~~~lEAla~G~PvV~~~g 90 (130)
|.++++||+++|+|+|+.+-
T Consensus 354 G~nS~~Ea~~~GvP~l~~P~ 373 (455)
T PLN02152 354 GWSSSLESLVLGVPVVAFPM 373 (455)
T ss_pred CcccHHHHHHcCCCEEeccc
Confidence 66899999999999999963
No 145
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.01 E-value=0.033 Score=42.97 Aligned_cols=87 Identities=15% Similarity=-0.039 Sum_probs=54.6
Q ss_pred HHHHHhhCC--CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 3 DIFVLKAVP--NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 3 w~~il~~~P--~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
|+++.+... +.++++.++++.+++..++..+ . . .++.+.|..+-.|+.++++.||+++. ..+| .+==|-+
T Consensus 199 ~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~-~-~--~~~~l~g~~sL~elaali~~a~l~I~--nDSG--p~HlA~A 270 (322)
T PRK10964 199 WRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAE-G-F--PYVEVLPKLSLEQVARVLAGAKAVVS--VDTG--LSHLTAA 270 (322)
T ss_pred HHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHc-c-C--CcceecCCCCHHHHHHHHHhCCEEEe--cCCc--HHHHHHH
Confidence 555555442 4566665322234444444433 2 2 35778898898999999999999982 2222 2334778
Q ss_pred cCCcEEecCCCchhhhh
Q psy15363 81 TGTPVVTLPGETLASRV 97 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~ 97 (130)
+|+|+|++-|.....+.
T Consensus 271 ~g~p~valfGpt~p~~~ 287 (322)
T PRK10964 271 LDRPNITLYGPTDPGLI 287 (322)
T ss_pred hCCCEEEEECCCCcccc
Confidence 99999999776544443
No 146
>PLN02207 UDP-glycosyltransferase
Probab=95.98 E-value=0.036 Score=45.63 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=32.1
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
+|+.+.+++|+.+++. ...+..|+ ..+|-++++||+++|+|+|+.+
T Consensus 332 ~~g~i~~W~PQ~~IL~-H~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P 377 (468)
T PLN02207 332 GRGMICGWSPQVEILA-HKAVGGFV---SHCGWNSIVESLWFGVPIVTWP 377 (468)
T ss_pred CCeEEEEeCCHHHHhc-ccccceee---ecCccccHHHHHHcCCCEEecC
Confidence 5666667777766543 13344465 2345578999999999999996
No 147
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=95.96 E-value=0.08 Score=44.92 Aligned_cols=77 Identities=13% Similarity=0.012 Sum_probs=56.7
Q ss_pred CcEEEEeecCccc-------HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEc-CCC-C-CCchHHHHHHhc
Q psy15363 12 NSILWLLKFPAVG-------EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPL-C-NGHTTSMDVLWT 81 (130)
Q Consensus 12 ~a~l~i~g~~~~~-------~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~-~~~-~-~~g~~~lEAla~ 81 (130)
+..+++.|++.+. .+.+.+++++-... +||.|+..-+..--..++..||++|. |+. + .+|++=+=||.-
T Consensus 424 pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~-~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~n 502 (601)
T TIGR02094 424 PVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFR-GRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMN 502 (601)
T ss_pred CeEEEEEEecCcccchHHHHHHHHHHHHhcccCC-CCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHc
Confidence 4889999975443 23344444433344 79999987775555567899999999 764 5 589999999999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|.+.++.-
T Consensus 503 GgL~~sv~ 510 (601)
T TIGR02094 503 GVLNLSIL 510 (601)
T ss_pred CCceeecc
Confidence 99999874
No 148
>PLN00414 glycosyltransferase family protein
Probab=95.86 E-value=0.056 Score=44.17 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=45.3
Q ss_pred EEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHH-HhcCCCCcee------cCH
Q psy15363 43 LFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQL-ATLGCPELIA------RTH 115 (130)
Q Consensus 43 ~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l-~~~g~~~~va------~~~ 115 (130)
++.+++|..+++. ...++.|+ ..+|-++++||+++|+|+|+.+--.- ....+.++ +..|..--+. -+.
T Consensus 315 vv~~w~PQ~~vL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~d-Q~~na~~~~~~~g~g~~~~~~~~~~~~~ 389 (446)
T PLN00414 315 VWEGWVEQPLILS-HPSVGCFV---NHCGFGSMWESLVSDCQIVFIPQLAD-QVLITRLLTEELEVSVKVQREDSGWFSK 389 (446)
T ss_pred EEeccCCHHHHhc-CCccceEE---ecCchhHHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCeEEEeccccCCccCH
Confidence 4446666655432 13345566 24566899999999999999974211 22233344 3445542221 245
Q ss_pred HHHHHHHHHhccC
Q psy15363 116 KEYQDIAIRLGTD 128 (130)
Q Consensus 116 ~~y~~~a~~l~~d 128 (130)
++..+...++..|
T Consensus 390 ~~i~~~v~~~m~~ 402 (446)
T PLN00414 390 ESLRDTVKSVMDK 402 (446)
T ss_pred HHHHHHHHHHhcC
Confidence 5665555555544
No 149
>PLN00164 glucosyltransferase; Provisional
Probab=95.83 E-value=0.19 Score=41.39 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=42.5
Q ss_pred EEEecCCCHHHHHHhhcccc--EEEcCCCCCCchHHHHHHhcCCcEEecCC--CchhhhhHHH-HHHhcCCCCcee----
Q psy15363 42 ILFSNVAAKEEHVRRGQLAD--VCLDTPLCNGHTTSMDVLWTGTPVVTLPG--ETLASRVAAS-QLATLGCPELIA---- 112 (130)
Q Consensus 42 v~f~g~~~~~~~~~~~~~~D--v~l~~~~~~~g~~~lEAla~G~PvV~~~g--~~~~~r~~~~-~l~~~g~~~~va---- 112 (130)
+++.+++|..+++ ...+ .|+ ..+|-++++||+++|+|+|+.+- +.. .-+. +....|+.-.+.
T Consensus 341 ~~v~~w~PQ~~iL---~h~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~~~~~~gvG~~~~~~~~ 411 (480)
T PLN00164 341 LVWPTWAPQKEIL---AHAAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQH---LNAFELVADMGVAVAMKVDRK 411 (480)
T ss_pred eEEeecCCHHHHh---cCcccCeEE---eecccchHHHHHHcCCCEEeCCccccch---hHHHHHHHHhCeEEEeccccc
Confidence 3444555555443 3333 344 23456799999999999999963 322 1222 234455543221
Q ss_pred ----cCHHHHHHHHHHhccC
Q psy15363 113 ----RTHKEYQDIAIRLGTD 128 (130)
Q Consensus 113 ----~~~~~y~~~a~~l~~d 128 (130)
-+.++..+...++..|
T Consensus 412 ~~~~~~~e~l~~av~~vm~~ 431 (480)
T PLN00164 412 RDNFVEAAELERAVRSLMGG 431 (480)
T ss_pred cCCcCcHHHHHHHHHHHhcC
Confidence 1345555555566554
No 150
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=95.76 E-value=0.052 Score=47.33 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=56.7
Q ss_pred CcEEEEeecCccc----HH---HHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC--C-CCchHHHHHHhc
Q psy15363 12 NSILWLLKFPAVG----EA---NIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--C-NGHTTSMDVLWT 81 (130)
Q Consensus 12 ~a~l~i~g~~~~~----~~---~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--~-~~g~~~lEAla~ 81 (130)
...+++.|+..|. ++ .+.++++...+. +||.|+..-+..--..+++.|||+|.|+. + .+|++=+=||.-
T Consensus 513 pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~-~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~N 591 (778)
T cd04299 513 PVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFR-GRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALN 591 (778)
T ss_pred CeEEEEEEecCccchHHHHHHHHHHHHHhCcCCC-CcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHc
Confidence 3889999964332 22 233334433454 79999988876555667899999999874 4 589999999999
Q ss_pred CCcEEecCC
Q psy15363 82 GTPVVTLPG 90 (130)
Q Consensus 82 G~PvV~~~g 90 (130)
|.+-++.-.
T Consensus 592 G~LnlSvlD 600 (778)
T cd04299 592 GGLNLSVLD 600 (778)
T ss_pred CCeeeeccc
Confidence 999998744
No 151
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.69 E-value=0.11 Score=33.32 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=51.7
Q ss_pred EEEeecCcccHHHHHHHHHHcCCCCCCEEE--ecCCCHH--HHHHhhccccEEEcCCCCCCch----HHHHHHhcCCcEE
Q psy15363 15 LWLLKFPAVGEANIQATAQALGLDQHRILF--SNVAAKE--EHVRRGQLADVCLDTPLCNGHT----TSMDVLWTGTPVV 86 (130)
Q Consensus 15 l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f--~g~~~~~--~~~~~~~~~Dv~l~~~~~~~g~----~~lEAla~G~PvV 86 (130)
++++|+-......+++.++++|. +.+.+ -+..... .+...+..+|+.+-.-.+.+.. +--+|-..|+|++
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~--~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGG--KLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCC--EEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEE
Confidence 46777423567889999999997 46666 1222233 4888889999997554443333 3456677899999
Q ss_pred ecCCCch
Q psy15363 87 TLPGETL 93 (130)
Q Consensus 87 ~~~g~~~ 93 (130)
...+..+
T Consensus 80 ~~~~~~~ 86 (97)
T PF10087_consen 80 YSRSRGV 86 (97)
T ss_pred EECCCCH
Confidence 9876544
No 152
>PLN02764 glycosyltransferase family protein
Probab=95.65 E-value=0.079 Score=43.46 Aligned_cols=82 Identities=10% Similarity=0.094 Sum_probs=47.2
Q ss_pred EEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHH-HhcCCCCcee------cC
Q psy15363 42 ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQL-ATLGCPELIA------RT 114 (130)
Q Consensus 42 v~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l-~~~g~~~~va------~~ 114 (130)
+++.+++|..+++. ...+..|+ ..+|-++++||+++|+|+|+.+--. -....+.++ +..|+.--+. -+
T Consensus 319 ~v~~~W~PQ~~vL~-h~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~-DQ~~na~~l~~~~g~gv~~~~~~~~~~~ 393 (453)
T PLN02764 319 VVWGGWVQQPLILS-HPSVGCFV---SHCGFGSMWESLLSDCQIVLVPQLG-DQVLNTRLLSDELKVSVEVAREETGWFS 393 (453)
T ss_pred cEEeCCCCHHHHhc-CcccCeEE---ecCCchHHHHHHHcCCCEEeCCccc-chHHHHHHHHHHhceEEEeccccCCccC
Confidence 44457777766543 23355566 2456689999999999999997421 122223333 3344432111 15
Q ss_pred HHHHHHHHHHhccC
Q psy15363 115 HKEYQDIAIRLGTD 128 (130)
Q Consensus 115 ~~~y~~~a~~l~~d 128 (130)
.++..+...++.+|
T Consensus 394 ~e~i~~av~~vm~~ 407 (453)
T PLN02764 394 KESLRDAINSVMKR 407 (453)
T ss_pred HHHHHHHHHHHhcC
Confidence 56666666666655
No 153
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=95.39 E-value=0.57 Score=37.33 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCCCCCEEE-ecCCCHHHHHHhhccccEEEcCCCCC-CchHHHHHHhcCCcEEecCCCchhhhhHHHHH
Q psy15363 25 EANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTGTPVVTLPGETLASRVAASQL 102 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f-~g~~~~~~~~~~~~~~Dv~l~~~~~~-~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l 102 (130)
.+.+++..+++--+ +++.. ...+|.+||.++++.||+.+..+.-- +--+++=.+.+|+||+......+ ...+
T Consensus 231 i~~V~~~~~~lF~~-~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~-----~~~l 304 (360)
T PF07429_consen 231 IQQVIQAGKELFGA-ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPF-----WQDL 304 (360)
T ss_pred HHHHHHHHHHhcCc-cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChH-----HHHH
Confidence 45566666665332 67765 57999999999999999999777543 33357889999999998765433 3445
Q ss_pred HhcCCCCcee
Q psy15363 103 ATLGCPELIA 112 (130)
Q Consensus 103 ~~~g~~~~va 112 (130)
...|++=+..
T Consensus 305 ~~~~ipVlf~ 314 (360)
T PF07429_consen 305 KEQGIPVLFY 314 (360)
T ss_pred HhCCCeEEec
Confidence 5667765544
No 154
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.31 E-value=0.29 Score=38.23 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhh
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRV 97 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~ 97 (130)
..+.|...-+..=|..+|..||.++-|- .+-+.+.||.+.|+||-+.+-+.-.+|+
T Consensus 209 ~~~~~~~~~~~nPy~~~La~ad~i~VT~--DSvSMvsEA~~tG~pV~v~~l~~~~~r~ 264 (311)
T PF06258_consen 209 PGVYIWDGTGENPYLGFLAAADAIVVTE--DSVSMVSEAAATGKPVYVLPLPGRSGRF 264 (311)
T ss_pred CceEEecCCCCCcHHHHHHhCCEEEEcC--ccHHHHHHHHHcCCCEEEecCCCcchHH
Confidence 4553333333333667777888887443 2346689999999999988654433343
No 155
>PLN02534 UDP-glycosyltransferase
Probab=94.76 E-value=0.092 Score=43.49 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=33.8
Q ss_pred CCEEEecCCCHHHHHHhhccccE--EEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADV--CLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv--~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
.++++.+++|..+++ ...++ |+ ..+|.++++||+++|+|+|+.+-
T Consensus 344 ~g~~v~~w~pq~~iL---~h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 344 RGLLIKGWAPQVLIL---SHPAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred CCeeccCCCCHHHHh---cCCccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 567777888876643 45555 44 34567899999999999999975
No 156
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=94.60 E-value=0.2 Score=39.29 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHcCCCCCCEEE-ecCCCHHHHHHhhccccEEEcCCCCC-CchHHHHHHhcCCcEEecCCCchhhhhHHHH
Q psy15363 24 GEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTGTPVVTLPGETLASRVAASQ 101 (130)
Q Consensus 24 ~~~~l~~~~~~~g~~~~rv~f-~g~~~~~~~~~~~~~~Dv~l~~~~~~-~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~ 101 (130)
+.+.+++..+++--. +++.. ...+|.+|+.++++.||+....+.-- +--+++=.+..|+||+.....++ ...
T Consensus 191 Yi~~V~~~~~~lF~~-~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~f-----wqd 264 (322)
T PRK02797 191 YIEEVRQAGLALFGA-ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPF-----WQD 264 (322)
T ss_pred HHHHHHHHHHHhcCc-ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCch-----HHH
Confidence 345666776766543 67665 57789999999999999998776543 33357789999999998765433 334
Q ss_pred HHhcCCCCce
Q psy15363 102 LATLGCPELI 111 (130)
Q Consensus 102 l~~~g~~~~v 111 (130)
+.+.|++-+.
T Consensus 265 l~e~gv~Vlf 274 (322)
T PRK02797 265 LTEQGLPVLF 274 (322)
T ss_pred HHhCCCeEEe
Confidence 5567777643
No 157
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=94.44 E-value=0.047 Score=46.19 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCC---CCC--EEEecCC-C------HHHHHHhhccccEEEcCCCC-CCchHHHHHHhcCCcEEecCCC
Q psy15363 26 ANIQATAQALGLD---QHR--ILFSNVA-A------KEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 26 ~~l~~~~~~~g~~---~~r--v~f~g~~-~------~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G~PvV~~~g~ 91 (130)
+.+-..+++.|+. .|| |+|.+.. + .-++..+++.||+.+.|+.| .-|-|-+|+.++|+|.||++=.
T Consensus 424 DpILn~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLs 502 (633)
T PF05693_consen 424 DPILNMIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLS 502 (633)
T ss_dssp -HHHHHHHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTB
T ss_pred CHHHHHHHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccch
Confidence 4556666777653 255 5665531 1 23455667899999999865 4789999999999999998643
No 158
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=94.15 E-value=0.73 Score=35.08 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=42.3
Q ss_pred cCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCc
Q psy15363 46 NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPEL 110 (130)
Q Consensus 46 g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~ 110 (130)
...+.+|+...++.||+++.+.- -.++=|+.+|+|+|....+ .=..++++.+|++.+
T Consensus 237 ~~~~~~e~~~~i~~~~~vI~~Rl----H~~I~A~~~gvP~i~i~y~----~K~~~~~~~~g~~~~ 293 (298)
T TIGR03609 237 SPLDPEELLGLFASARLVIGMRL----HALILAAAAGVPFVALSYD----PKVRAFAADAGVPGF 293 (298)
T ss_pred ecCCHHHHHHHHhhCCEEEEech----HHHHHHHHcCCCEEEeecc----HHHHHHHHHhCCCcc
Confidence 44566788889999998884432 2478899999999988532 234678888898875
No 159
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.72 E-value=0.68 Score=36.17 Aligned_cols=72 Identities=22% Similarity=0.163 Sum_probs=50.4
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCc
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 92 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~ 92 (130)
.++++.|++ .+.+..++..+.++- -+.+.|..+-.++.+++..||+++ ...+|. +==|-|.|+|+|+.-|..
T Consensus 209 ~~Vvl~g~~-~e~e~~~~i~~~~~~---~~~l~~k~sL~e~~~li~~a~l~I--~~DSg~--~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 209 YQVVLFGGP-DEEERAEEIAKGLPN---AVILAGKTSLEELAALIAGADLVI--GNDSGP--MHLAAALGTPTIALYGPT 280 (334)
T ss_pred CEEEEecCh-HHHHHHHHHHHhcCC---ccccCCCCCHHHHHHHHhcCCEEE--ccCChH--HHHHHHcCCCEEEEECCC
Confidence 577788853 555566666665542 233889999999999999999997 222221 233678999999997654
No 160
>PLN03015 UDP-glucosyl transferase
Probab=93.16 E-value=0.52 Score=38.92 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=31.8
Q ss_pred EEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 42 ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 42 v~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
+++.+++|..+++. ...+-.|+. .+|-++++||+++|+|+|+.+-
T Consensus 337 l~v~~W~PQ~~vL~-h~~vg~fvt---H~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 337 LVVTQWAPQVEILS-HRSIGGFLS---HCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred eEEEecCCHHHHhc-cCccCeEEe---cCCchhHHHHHHcCCCEEeccc
Confidence 56668888777654 233444552 3455799999999999999963
No 161
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=93.06 E-value=0.7 Score=35.35 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=55.2
Q ss_pred CCcEEEEeecCccc-HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVG-EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~-~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
|-..++++..+.++ .-++-+-++.+|++..|..|++--+...|+..+ .+|+||.+-+ .-+-+|+.+|.|--+.
T Consensus 35 ~~VEVVllSRNspdTGlRv~nSI~hygL~ItR~~ft~G~~~~~Yl~af-~v~LFLSan~----~DV~~Ai~~G~~Aa~v 108 (264)
T PF06189_consen 35 PLVEVVLLSRNSPDTGLRVFNSIRHYGLDITRAAFTGGESPYPYLKAF-NVDLFLSANE----DDVQEAIDAGIPAATV 108 (264)
T ss_pred CceEEEEEecCCHHHHHHHHHhHHHhCCcceeeeecCCCCHHHHHHHh-CCceEeeCCH----HHHHHHHHcCCCcEEe
Confidence 44666777764332 225667789999999999999888877777766 6899996554 5699999999996554
No 162
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=92.64 E-value=0.59 Score=34.26 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=49.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEec-CCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g-~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
...++++|........+++.+++.|...-.=+|+| ..+.... .-++.=|+.+-+-|..-...+.||..+|+|+|+.
T Consensus 61 ~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai 137 (196)
T TIGR01012 61 PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREPEVVVVTDPRADHQALKEASEVGIPIVAL 137 (196)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCCCEEEEECCccccHHHHHHHHcCCCEEEE
Confidence 56778888754456667777777664321224554 3343221 2356777776555666678999999999999987
No 163
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=92.62 E-value=0.19 Score=41.47 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=46.6
Q ss_pred hHHHHHhhCCC----cEEEEeecCc----cc----HHHHHHHH----HHcCCC-CCCEEEe-cCCCHHHHHHhhccccEE
Q psy15363 2 SDIFVLKAVPN----SILWLLKFPA----VG----EANIQATA----QALGLD-QHRILFS-NVAAKEEHVRRGQLADVC 63 (130)
Q Consensus 2 ~w~~il~~~P~----a~l~i~g~~~----~~----~~~l~~~~----~~~g~~-~~rv~f~-g~~~~~~~~~~~~~~Dv~ 63 (130)
+|.+.|+++|+ ..|+-++.+. +. ++.+.+++ .++|-. ..-|.+. +.++.+++.++|+.||++
T Consensus 297 Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~ 376 (474)
T PF00982_consen 297 AFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVA 376 (474)
T ss_dssp HHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEE
T ss_pred HHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhE
Confidence 68889999996 4555555321 11 22333332 245643 1246665 458999999999999999
Q ss_pred EcCCC-CCCchHHHHHHhcCCc
Q psy15363 64 LDTPL-CNGHTTSMDVLWTGTP 84 (130)
Q Consensus 64 l~~~~-~~~g~~~lEAla~G~P 84 (130)
|.|+. .|.-++..|..+|-.+
T Consensus 377 lvTslrDGmNLva~Eyva~q~~ 398 (474)
T PF00982_consen 377 LVTSLRDGMNLVAKEYVACQDD 398 (474)
T ss_dssp EE--SSBS--HHHHHHHHHS-T
T ss_pred EecchhhccCCcceEEEEEecC
Confidence 98875 5668899999999876
No 164
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=92.55 E-value=2.8 Score=33.86 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=49.0
Q ss_pred CCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee
Q psy15363 39 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA 112 (130)
Q Consensus 39 ~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va 112 (130)
.+++.+..-...+++...++.+|+.+-+-- -+++=|++.|+|+|+..-+ .=...+++.+|++++.-
T Consensus 265 ~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~----HsaI~al~~g~p~i~i~Y~----~K~~~l~~~~gl~~~~~ 330 (385)
T COG2327 265 SAEILVSSDEYAEELGGILAACDLIVGMRL----HSAIMALAFGVPAIAIAYD----PKVRGLMQDLGLPGFAI 330 (385)
T ss_pred ccceEeecchHHHHHHHHhccCceEEeehh----HHHHHHHhcCCCeEEEeec----HHHHHHHHHcCCCcccc
Confidence 378888764444567779999999984432 3588899999999998643 22457889999998764
No 165
>PRK10494 hypothetical protein; Provisional
Probab=92.55 E-value=0.84 Score=34.71 Aligned_cols=89 Identities=19% Similarity=0.107 Sum_probs=62.2
Q ss_pred HHHhhCCCcEEEEeecCcc-----cHHHHHHHHHHcCCCCCCEEEecCCC--HHHH---HHhhccccEEEcCCCCCCchH
Q psy15363 5 FVLKAVPNSILWLLKFPAV-----GEANIQATAQALGLDQHRILFSNVAA--KEEH---VRRGQLADVCLDTPLCNGHTT 74 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~-----~~~~l~~~~~~~g~~~~rv~f~g~~~--~~~~---~~~~~~~Dv~l~~~~~~~g~~ 74 (130)
++.++.|+.++++-|+.+. +-+..++.+.++|+++++++..+... .++. ..++..-.+.|-|+.+.-.-+
T Consensus 114 ~L~r~~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTsa~Hm~RA 193 (259)
T PRK10494 114 RLWRANPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRA 193 (259)
T ss_pred HHHHhCCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECCHHHHHHH
Confidence 4567789999988885431 23466778899999977888866543 3332 333344458888888876666
Q ss_pred HHHHHhcCCcEEecCCCch
Q psy15363 75 SMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 75 ~lEAla~G~PvV~~~g~~~ 93 (130)
...+-..|+.|+..+.++.
T Consensus 194 ~~~f~~~Gl~v~p~Ptd~~ 212 (259)
T PRK10494 194 MIFFQQEGLNPLPAPANQL 212 (259)
T ss_pred HHHHHHcCCceeecCCcce
Confidence 7777778999998876643
No 166
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=91.66 E-value=0.21 Score=33.54 Aligned_cols=39 Identities=21% Similarity=0.065 Sum_probs=25.1
Q ss_pred HHHHHhhccccEEEcCC-CCCCchHHHHHHhcCCcEEecC
Q psy15363 51 EEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 51 ~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G~PvV~~~ 89 (130)
+++...+..+|+.+|-+ |...-.-+-.++..|+|+|+-.
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEEC
Confidence 34667777899999854 5444445667788899999743
No 167
>KOG1192|consensus
Probab=91.47 E-value=0.32 Score=39.41 Aligned_cols=50 Identities=16% Similarity=0.421 Sum_probs=33.6
Q ss_pred CEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC--CCch
Q psy15363 41 RILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP--GETL 93 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~--g~~~ 93 (130)
+|.+.+++|..+++.-......|+ ..+|=++++|++.+|+|+|+.+ ++.+
T Consensus 336 nV~~~~W~PQ~~lll~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~ 387 (496)
T KOG1192|consen 336 NVVLSKWAPQNDLLLDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQP 387 (496)
T ss_pred ceEEecCCCcHHHhcCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccch
Confidence 588889999887651223345555 1334466799999999999764 4544
No 168
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=91.09 E-value=0.67 Score=35.22 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=48.5
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe-cCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~-g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.|+- ++++|........+++.++..|...-.=+|+ |..+.. ....+..=|+.+-+-|..-...+.||-.+|+|||++
T Consensus 70 ~~~~-Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~-~~~~f~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal 147 (249)
T PTZ00254 70 NPAD-VVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQ-IQKKFMEPRLLIVTDPRTDHQAIREASYVNIPVIAL 147 (249)
T ss_pred CCCc-EEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCc-cccccCCCCEEEEeCCCcchHHHHHHHHhCCCEEEE
Confidence 3544 5577764445667777777776432111344 333432 223456677776555666678999999999999987
No 169
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=91.03 E-value=1.2 Score=32.93 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=48.9
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe-cCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~-g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.+-.++++|.....+..+++.+++.|...-.=+|+ |..+.... ..+..=|+.+-.-|..-...+.||.-.|+|||+.
T Consensus 66 ~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~-~~~~~Pdliiv~dp~~~~~AI~EA~kl~IP~Iai 143 (204)
T PRK04020 66 EPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSL-KGYIEPDVVVVTDPRGDAQAVKEAIEVGIPVVAL 143 (204)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcch-hccCCCCEEEEECCcccHHHHHHHHHhCCCEEEE
Confidence 44567788875445667777777776431111344 34443332 2344666665445555678999999999999987
No 170
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=90.88 E-value=0.59 Score=39.32 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=57.0
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEc-CCCCCCchHHHHHHhcCCcEEecCCCchhhhhHH----------------HHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAA----------------SQL 102 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~-~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~----------------~~l 102 (130)
+-|.=.|.++++|+..+++.+-||+- -||+. |-+-+||+++|+|-|-..-....+|... -.+
T Consensus 322 ~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~E-gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~ 400 (559)
T PF15024_consen 322 SFVKNHGILSGDEFQQLLRKAKVFIGLGFPYE-GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYA 400 (559)
T ss_pred hhhhhcCcCCHHHHHHHHHhhhEeeecCCCCC-CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHH
Confidence 34555677899999999999999985 36776 4568999999999886542222222111 112
Q ss_pred H-hcCCCC---ceecCHHHHHHHHHHhccC
Q psy15363 103 A-TLGCPE---LIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 103 ~-~~g~~~---~va~~~~~y~~~a~~l~~d 128 (130)
. .+|-|- +-.+|.+++.+.+.+.+++
T Consensus 401 e~~iG~PhVytVd~~n~~~v~~Avk~il~~ 430 (559)
T PF15024_consen 401 EEFIGEPHVYTVDINNSTEVEAAVKAILAT 430 (559)
T ss_pred HhhCCCCeEEEEcCCCHHHHHHHHHHHHhc
Confidence 2 356654 2235677777766666554
No 171
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=90.82 E-value=1.4 Score=36.58 Aligned_cols=83 Identities=12% Similarity=0.066 Sum_probs=55.0
Q ss_pred hHHHHHhhCCC----cEEEEeecCc----cc----HHHHHHHHH----HcCCC-CCCEEEe-cCCCHHHHHHhhccccEE
Q psy15363 2 SDIFVLKAVPN----SILWLLKFPA----VG----EANIQATAQ----ALGLD-QHRILFS-NVAAKEEHVRRGQLADVC 63 (130)
Q Consensus 2 ~w~~il~~~P~----a~l~i~g~~~----~~----~~~l~~~~~----~~g~~-~~rv~f~-g~~~~~~~~~~~~~~Dv~ 63 (130)
+|.+.|+++|+ ..|+-+..+. +. +..+.+.+. ++|-. ..-|+++ ..++++++.++|+.|||+
T Consensus 276 Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~ 355 (474)
T PRK10117 276 AYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVG 355 (474)
T ss_pred HHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEE
Confidence 68889999995 5566666421 11 223333322 34532 1126655 557899999999999999
Q ss_pred EcCC-CCCCchHHHHHHhcCCc
Q psy15363 64 LDTP-LCNGHTTSMDVLWTGTP 84 (130)
Q Consensus 64 l~~~-~~~~g~~~lEAla~G~P 84 (130)
|.|+ ..|.-.+.-|..+|-.|
T Consensus 356 lVTplRDGMNLVAkEyva~q~~ 377 (474)
T PRK10117 356 LVTPLRDGMNLVAKEYVAAQDP 377 (474)
T ss_pred EecccccccccccchheeeecC
Confidence 8776 45667899999999653
No 172
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=90.81 E-value=1.5 Score=38.92 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=55.0
Q ss_pred hHHHHHhhCCCc----EEEEeecCc----ccHH----HHHHHH----HHcCCC-CCCEEEe-cCCCHHHHHHhhccccEE
Q psy15363 2 SDIFVLKAVPNS----ILWLLKFPA----VGEA----NIQATA----QALGLD-QHRILFS-NVAAKEEHVRRGQLADVC 63 (130)
Q Consensus 2 ~w~~il~~~P~a----~l~i~g~~~----~~~~----~l~~~~----~~~g~~-~~rv~f~-g~~~~~~~~~~~~~~Dv~ 63 (130)
+|.+.|+++|+. .|+-+..+. .+.+ .+.+.+ .++|-. ..-|+++ ..++.+++.++|+.||++
T Consensus 360 A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~ 439 (854)
T PLN02205 360 AMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECC 439 (854)
T ss_pred HHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEE
Confidence 678899999964 566665431 1112 222322 244532 2347776 557999999999999999
Q ss_pred EcCCC-CCCchHHHHHHhcCC
Q psy15363 64 LDTPL-CNGHTTSMDVLWTGT 83 (130)
Q Consensus 64 l~~~~-~~~g~~~lEAla~G~ 83 (130)
|.|+- .+.-.+..|-.+|-.
T Consensus 440 lVT~lRDGMNLva~Eyia~~~ 460 (854)
T PLN02205 440 LVTAVRDGMNLIPYEYIISRQ 460 (854)
T ss_pred EeccccccccccchheeEEcc
Confidence 88774 555778999998854
No 173
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=90.61 E-value=1.7 Score=28.32 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCcEEecCCC
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVTLPGE 91 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~PvV~~~g~ 91 (130)
.+.+++.++++|++ +.+. ..+..++......+|++|-+.....-..-++.. ..|+||...+..
T Consensus 17 a~km~~~a~~~gi~---~~i~-a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~ 81 (99)
T cd05565 17 ANALNKGAKERGVP---LEAA-AGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGK 81 (99)
T ss_pred HHHHHHHHHHCCCc---EEEE-EeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHH
Confidence 56889999999995 3332 445566777788899998666543333334433 448999998754
No 174
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=90.58 E-value=2.4 Score=32.49 Aligned_cols=79 Identities=15% Similarity=0.052 Sum_probs=52.9
Q ss_pred HHHHHhhCCC-cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC-CCCCchHHHHHHh
Q psy15363 3 DIFVLKAVPN-SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLW 80 (130)
Q Consensus 3 w~~il~~~P~-a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla 80 (130)
+...+.+.++ ..++-+.+ ...++.++.++++|+. ..+.+.+++++ -...|++.-.. +....-.++.|+.
T Consensus 19 ~~~~~~~~~~~~~~vav~d--~~~~~a~~~a~~~~~~------~~~~~~~~ll~-~~~iD~V~Iatp~~~H~e~~~~AL~ 89 (342)
T COG0673 19 HLPALAALGGGLELVAVVD--RDPERAEAFAEEFGIA------KAYTDLEELLA-DPDIDAVYIATPNALHAELALAALE 89 (342)
T ss_pred hHHHHHhCCCceEEEEEec--CCHHHHHHHHHHcCCC------cccCCHHHHhc-CCCCCEEEEcCCChhhHHHHHHHHh
Confidence 5567777787 46666654 4567788899999984 22334455543 12278885444 4455667899999
Q ss_pred cCCcEEecCC
Q psy15363 81 TGTPVVTLPG 90 (130)
Q Consensus 81 ~G~PvV~~~g 90 (130)
.|++|++-+-
T Consensus 90 aGkhVl~EKP 99 (342)
T COG0673 90 AGKHVLCEKP 99 (342)
T ss_pred cCCEEEEcCC
Confidence 9999999653
No 175
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=90.47 E-value=1.5 Score=35.30 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=53.6
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHH----HcC----CCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchH
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQ----ALG----LDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTT 74 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~----~~g----~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~ 74 (130)
|-+.+++.+....+++.. |...+.+++++. +.| -..=++.++++++.+++-.++..||+-. --|=-+
T Consensus 200 ll~~~~~~~~pv~llvp~-g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~Nf----VRGEDS 274 (374)
T PF10093_consen 200 LLDAWAASPKPVHLLVPE-GRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNF----VRGEDS 274 (374)
T ss_pred HHHHHhcCCCCeEEEecC-CccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccce----EecchH
Confidence 334445556555555553 455566655553 111 1113688899999999999999999865 223356
Q ss_pred HHHHHhcCCcEEec
Q psy15363 75 SMDVLWTGTPVVTL 88 (130)
Q Consensus 75 ~lEAla~G~PvV~~ 88 (130)
.+-|.++|+|-|=.
T Consensus 275 fVRAqwAgkPFvWh 288 (374)
T PF10093_consen 275 FVRAQWAGKPFVWH 288 (374)
T ss_pred HHHHHHhCCCceEe
Confidence 78999999999943
No 176
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=90.45 E-value=2.8 Score=31.96 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=50.9
Q ss_pred CCEEEecCCCHHHHHHhhcc--ccEEEcC-CCCC---CchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee-
Q psy15363 40 HRILFSNVAAKEEHVRRGQL--ADVCLDT-PLCN---GHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA- 112 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~--~Dv~l~~-~~~~---~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va- 112 (130)
..+++.|+...+++..+++. .|+.+|. .||. +-+.+-=|--.|+|.+-+.-..+.. .-+.|+.
T Consensus 45 ~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~----------~gd~~~~V 114 (257)
T COG2099 45 GPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAP----------NGDNWIEV 114 (257)
T ss_pred CCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCcccc----------CCCceEEe
Confidence 46889999999999998866 8889995 5785 3455556667899999885443322 1123332
Q ss_pred cCHHHHHHHHHHh
Q psy15363 113 RTHKEYQDIAIRL 125 (130)
Q Consensus 113 ~~~~~y~~~a~~l 125 (130)
.|.++-++.+.++
T Consensus 115 ~d~~ea~~~~~~~ 127 (257)
T COG2099 115 ADIEEAAEAAKQL 127 (257)
T ss_pred cCHHHHHHHHhcc
Confidence 5666666655544
No 177
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.43 E-value=6.3 Score=35.84 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=55.1
Q ss_pred HHHHHhhCCCcE------------EEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC
Q psy15363 3 DIFVLKAVPNSI------------LWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC 69 (130)
Q Consensus 3 w~~il~~~P~a~------------l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~ 69 (130)
.++.+.+.|++. ++.+++ ...+..+++++.+ ++. -+. +...+.+++.++++.+|+++...|.
T Consensus 584 ~a~~La~~~~~~~~~~~~~~~~~~lV~VaD--~~~~~a~~la~~~~~~~--~v~-lDv~D~e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 584 AAEYLASVKTISYYGDDSEEPTDVHVIVAS--LYLKDAKETVEGIENAE--AVQ-LDVSDSESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHHHhCcCccccccccccccccEEEEEC--CCHHHHHHHHHhcCCCc--eEE-eecCCHHHHHHhhcCCCEEEECCCc
Confidence 345666667655 556664 3344556666654 321 122 2234567888888899999987776
Q ss_pred C-CchHHHHHHhcCCcEEecCCC
Q psy15363 70 N-GHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 70 ~-~g~~~lEAla~G~PvV~~~g~ 91 (130)
. ....+..|+..|+++|+....
T Consensus 659 ~~H~~VAkaAieaGkHvv~eky~ 681 (1042)
T PLN02819 659 SCHAVVAKACIELKKHLVTASYV 681 (1042)
T ss_pred hhhHHHHHHHHHcCCCEEECcCC
Confidence 5 466788899999999998743
No 178
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=90.06 E-value=2.5 Score=33.55 Aligned_cols=89 Identities=19% Similarity=0.118 Sum_probs=56.4
Q ss_pred hHHHHHhhCC-CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE--Ec-CC-C-CCCchHH
Q psy15363 2 SDIFVLKAVP-NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC--LD-TP-L-CNGHTTS 75 (130)
Q Consensus 2 ~w~~il~~~P-~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~--l~-~~-~-~~~g~~~ 75 (130)
.+.+.+.+.| ++.|+-+.+ ...++.++.++++|+. .+.+.+++. ...|+. .- +. | ....-.+
T Consensus 16 ~h~~al~~~~~~~eLvaV~d--~~~erA~~~A~~~gi~-------~y~~~eell---~d~Di~~V~ipt~~P~~~H~e~a 83 (343)
T TIGR01761 16 FYLAAFAAAPERFELAGILA--QGSERSRALAHRLGVP-------LYCEVEELP---DDIDIACVVVRSAIVGGQGSALA 83 (343)
T ss_pred HHHHHHHhCCCCcEEEEEEc--CCHHHHHHHHHHhCCC-------ccCCHHHHh---cCCCEEEEEeCCCCCCccHHHHH
Confidence 3556677788 899888775 3456778889999873 234556665 344444 22 22 2 3445678
Q ss_pred HHHHhcCCcEEecCCCchhhhhHHHHHHh
Q psy15363 76 MDVLWTGTPVVTLPGETLASRVAASQLAT 104 (130)
Q Consensus 76 lEAla~G~PvV~~~g~~~~~r~~~~~l~~ 104 (130)
.+|+..|+.|++-+-- ...-...+++.
T Consensus 84 ~~aL~aGkHVL~EKPl--a~~Ea~el~~~ 110 (343)
T TIGR01761 84 RALLARGIHVLQEHPL--HPRDIQDLLRL 110 (343)
T ss_pred HHHHhCCCeEEEcCCC--CHHHHHHHHHH
Confidence 9999999999996432 23334444433
No 179
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=90.02 E-value=1.2 Score=30.68 Aligned_cols=92 Identities=22% Similarity=0.185 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHcCCCCCCEEEecCCCH---HH-H--------------------------HHhhccccEEEcCCC-----
Q psy15363 24 GEANIQATAQALGLDQHRILFSNVAAK---EE-H--------------------------VRRGQLADVCLDTPL----- 68 (130)
Q Consensus 24 ~~~~l~~~~~~~g~~~~rv~f~g~~~~---~~-~--------------------------~~~~~~~Dv~l~~~~----- 68 (130)
-|+.+++-+++.|++ |.|.+++.. .| . ..++..|||.+--|.
T Consensus 10 WRe~I~~ga~~~~L~---v~F~~PvtdH~~SD~~G~~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFGekYKQ 86 (141)
T PF11071_consen 10 WREEIKEGAKAAGLP---VEFTSPVTDHEASDDCGVDILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFGEKYKQ 86 (141)
T ss_pred HHHHHHHHHHHcCCC---eEEecCCCCchhhhhhhHHHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEechHHHH
Confidence 477788888887774 778777651 11 1 235678999986663
Q ss_pred CCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCC-CCceecCHHHHHHHHH
Q psy15363 69 CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGC-PELIARTHKEYQDIAI 123 (130)
Q Consensus 69 ~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~-~~~va~~~~~y~~~a~ 123 (130)
|+..+-.--|.+.|+|.|++..+.+.- -|+++.. -..+++++++-+++..
T Consensus 87 WNaAfDAg~a~AlgKplI~lh~~~~~H-----pLKEvda~A~a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 87 WNAAFDAGYAAALGKPLITLHPEELHH-----PLKEVDAAALAVAETPEQVVEILR 137 (141)
T ss_pred HHHHhhHHHHHHcCCCeEEecchhccc-----cHHHHhHhhHhhhCCHHHHHHHHH
Confidence 233333444688999999997654321 1111111 1234567766665543
No 180
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=89.64 E-value=0.89 Score=37.93 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=52.6
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC-CHHHHHHhhcccc-EEEcCCCCCCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-AKEEHVRRGQLAD-VCLDTPLCNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~-~~~~~~~~~~~~D-v~l~~~~~~~g~~~lEAl 79 (130)
++.....++|.+-+++.-++......-+..+.++... .||+++..- .. ..+++..| ||.-|+.. -+||+
T Consensus 171 m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~-~r~~ll~edfnp---isll~~~dkvy~~ts~m-----gfeal 241 (671)
T COG3563 171 MFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQ-HRVHLLAEDFNP---ISLLQNVDKVYCVTSQM-----GFEAL 241 (671)
T ss_pred HHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccC-ceEEEecccCCh---HHHHHhcceeEEeeccc-----cHHHH
Confidence 4566788999999999887532222334456666664 889887642 22 23455555 44555554 37999
Q ss_pred hcCCcEEecCC
Q psy15363 80 WTGTPVVTLPG 90 (130)
Q Consensus 80 a~G~PvV~~~g 90 (130)
.||+|++|..-
T Consensus 242 l~~~~~~~fg~ 252 (671)
T COG3563 242 LCGKPLTTFGL 252 (671)
T ss_pred hcCCceeeecc
Confidence 99999999743
No 181
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=89.62 E-value=1.7 Score=34.43 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=38.0
Q ss_pred hhccccEEEcCCCCCCchHHHHHHhcCCcEEec-CCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHH
Q psy15363 56 RGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL-PGETLASRVAASQLATLGCPELIARTHKEYQDIAIR 124 (130)
Q Consensus 56 ~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~-~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~ 124 (130)
++.-||+++ -+||+.+.||-..|+|+|.. +|.... ....+...|+ -+-..|.++-++...+
T Consensus 245 Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~---vd~~L~~~Gl-l~~~~~~~ei~~~v~~ 306 (335)
T PF04007_consen 245 LLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA---VDKYLIEKGL-LYHSTDPDEIVEYVRK 306 (335)
T ss_pred HHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh---HHHHHHHCCC-eEecCCHHHHHHHHHH
Confidence 444556655 56899999999999999985 444211 1223444465 3344677776665543
No 182
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=89.49 E-value=4 Score=33.95 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=54.6
Q ss_pred hHHHHHhhCCC----cEEEEeecCcc-c-------HHHHHHHH----HHcCCC-CCCEEEecC-CCHHHHHHhhccccEE
Q psy15363 2 SDIFVLKAVPN----SILWLLKFPAV-G-------EANIQATA----QALGLD-QHRILFSNV-AAKEEHVRRGQLADVC 63 (130)
Q Consensus 2 ~w~~il~~~P~----a~l~i~g~~~~-~-------~~~l~~~~----~~~g~~-~~rv~f~g~-~~~~~~~~~~~~~Dv~ 63 (130)
+|.++|..+|+ +.|+-++.+.. . +..+++.+ .++|-. ..-|+|+-. ++++++.++|+.+|++
T Consensus 303 Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~ 382 (486)
T COG0380 303 AFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVM 382 (486)
T ss_pred HHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhcee
Confidence 68899999984 56666664311 1 11222222 244532 234777655 7899999999999999
Q ss_pred EcCC-CCCCchHHHHHHhcCC
Q psy15363 64 LDTP-LCNGHTTSMDVLWTGT 83 (130)
Q Consensus 64 l~~~-~~~~g~~~lEAla~G~ 83 (130)
+.|+ ..+--++..|..+|--
T Consensus 383 lVtplrDGMNLvakEyVa~q~ 403 (486)
T COG0380 383 LVTPLRDGMNLVAKEYVAAQR 403 (486)
T ss_pred eeccccccccHHHHHHHHhhc
Confidence 7765 5666889999988743
No 183
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=89.43 E-value=6.6 Score=29.83 Aligned_cols=87 Identities=15% Similarity=0.059 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCCCCEEE-ecCCCHHHHHHhhcc--ccEEEcC-CCCCCch--HHHHHHhcCCcEEecCCCchhhhhHHH
Q psy15363 27 NIQATAQALGLDQHRILF-SNVAAKEEHVRRGQL--ADVCLDT-PLCNGHT--TSMDVLWTGTPVVTLPGETLASRVAAS 100 (130)
Q Consensus 27 ~l~~~~~~~g~~~~rv~f-~g~~~~~~~~~~~~~--~Dv~l~~-~~~~~g~--~~lEAla~G~PvV~~~g~~~~~r~~~~ 100 (130)
.++ .+.++|+.+++++. .|+.+.+.=.++++. +|+.+.= +...||. .+--|+.+|+|||...-...
T Consensus 163 ~l~-~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~------- 234 (256)
T TIGR00715 163 ALA-QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQT------- 234 (256)
T ss_pred hhH-HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC-------
Confidence 444 57888998788666 588886655566654 7777732 3233333 46778889999998754311
Q ss_pred HHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 101 QLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 101 ~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
..+.-+..+.++.++...+++
T Consensus 235 -----~~~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 235 -----IPGVAIFDDISQLNQFVARLL 255 (256)
T ss_pred -----CCCCccCCCHHHHHHHHHHhc
Confidence 111234578888887776654
No 184
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=89.07 E-value=4.3 Score=28.53 Aligned_cols=66 Identities=24% Similarity=0.120 Sum_probs=40.1
Q ss_pred HhhccccEEEcCCCCCCch--HHHHHHhcCCcEEecCCCchh-hhhHHHHHHhcCCC-C--ceecCHHHHHHHH
Q psy15363 55 RRGQLADVCLDTPLCNGHT--TSMDVLWTGTPVVTLPGETLA-SRVAASQLATLGCP-E--LIARTHKEYQDIA 122 (130)
Q Consensus 55 ~~~~~~Dv~l~~~~~~~g~--~~lEAla~G~PvV~~~g~~~~-~r~~~~~l~~~g~~-~--~va~~~~~y~~~a 122 (130)
.+...+|.|+- .|-+.|+ .+.||+..++||+.++++.+. .++. .++..-+.. + .+++|+++-++++
T Consensus 87 ~m~~~sda~Iv-lpGG~GTL~E~~~a~~~~kpv~~l~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 87 ILVRSADVVVS-VGGGYGTAIEILGAYALGGPVVVLRGTGGWTDRLS-QVLIEGVYLDERVIVEITPAEAVKLA 158 (159)
T ss_pred HHHHHCCEEEE-cCCchhHHHHHHHHHHcCCCEEEEECCCcchHHHH-HHHhccccccceeEecCCHHHHHHhh
Confidence 34567898863 2434443 589999999999999876443 3333 222222222 2 3457888877665
No 185
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=88.91 E-value=11 Score=30.43 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=38.3
Q ss_pred CCchHHHHHHhcCCcEEecCCCch--hhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhcc
Q psy15363 70 NGHTTSMDVLWTGTPVVTLPGETL--ASRVAASQLATLGCPELIAR---THKEYQDIAIRLGT 127 (130)
Q Consensus 70 ~~g~~~lEAla~G~PvV~~~g~~~--~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~~ 127 (130)
+|=+|++|=+..|+|-+..+-... ..-+-|.-+..+|+-+.+-. +.+.+.+..+.+.+
T Consensus 302 ~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 302 GGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred ccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhccc
Confidence 345899999999999877643221 33456778888999876543 35555555554443
No 186
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.43 E-value=2.7 Score=33.01 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=36.0
Q ss_pred CEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 41 RILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
||.-++++|.+++-.++..||+-+ .-|--+-.-|.++|+|-+=.
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~----VRGEDSFVRAq~agkPflWH 282 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNL----VRGEDSFVRAQLAGKPFLWH 282 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccce----eecchHHHHHHHcCCCcEEE
Confidence 677889999999999999999876 33445678899999998743
No 187
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=88.29 E-value=4.3 Score=29.25 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=35.8
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
.........+.+++..+++.+|+++.+-- -..+=|+..|+|+|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~Is~Rl----H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 238 NVIIIDYSLSPDELLELISQADLVISMRL----HGAILALSLGVPVIAISY 284 (286)
T ss_pred ceeEecCCCCHHHHHHHHhcCCEEEecCC----HHHHHHHHcCCCEEEEec
Confidence 34444555678999999999999995433 247779999999998754
No 188
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=88.09 E-value=0.75 Score=34.71 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=33.1
Q ss_pred HHHHHHhhccccEEEcCCCCC-CchHHHHHHhcC-CcEEecC
Q psy15363 50 KEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTG-TPVVTLP 89 (130)
Q Consensus 50 ~~~~~~~~~~~Dv~l~~~~~~-~g~~~lEAla~G-~PvV~~~ 89 (130)
..++...|+.+..+|-|...+ ...-+.|||.+| +|||..+
T Consensus 227 ~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d 268 (302)
T PF03016_consen 227 PSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISD 268 (302)
T ss_pred chHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecC
Confidence 456889999999999866654 567899999999 8999854
No 189
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=87.97 E-value=4.9 Score=25.88 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=50.4
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEc-CCCCCCchHHHHHHhcC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTG 82 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~-~~~~~~g~~~lEAla~G 82 (130)
..+++..|+..++-+-+ +..++.++..++.|+. .| .+.+++...- ..|+.+- +.+......+.+++..|
T Consensus 17 ~~~~~~~~~~~v~~v~d--~~~~~~~~~~~~~~~~----~~---~~~~~ll~~~-~~D~V~I~tp~~~h~~~~~~~l~~g 86 (120)
T PF01408_consen 17 RALLRSSPDFEVVAVCD--PDPERAEAFAEKYGIP----VY---TDLEELLADE-DVDAVIIATPPSSHAEIAKKALEAG 86 (120)
T ss_dssp HHHHHTTTTEEEEEEEC--SSHHHHHHHHHHTTSE----EE---SSHHHHHHHT-TESEEEEESSGGGHHHHHHHHHHTT
T ss_pred HHHHhcCCCcEEEEEEe--CCHHHHHHHHHHhccc----ch---hHHHHHHHhh-cCCEEEEecCCcchHHHHHHHHHcC
Confidence 34555668888776664 3456677778888874 22 3345554322 5888854 44455567899999999
Q ss_pred CcEEecC
Q psy15363 83 TPVVTLP 89 (130)
Q Consensus 83 ~PvV~~~ 89 (130)
++|++-+
T Consensus 87 ~~v~~EK 93 (120)
T PF01408_consen 87 KHVLVEK 93 (120)
T ss_dssp SEEEEES
T ss_pred CEEEEEc
Confidence 9999864
No 190
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=87.85 E-value=6.7 Score=28.44 Aligned_cols=87 Identities=13% Similarity=0.023 Sum_probs=53.1
Q ss_pred HHHHHhhC--CCcEEEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC----CC---
Q psy15363 3 DIFVLKAV--PNSILWLLKFPAV----GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP----LC--- 69 (130)
Q Consensus 3 w~~il~~~--P~a~l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~----~~--- 69 (130)
+.++++.. ++.+++++..... .-+..++.++++|+....+......+.++..+.+..+|+..-+- ..
T Consensus 18 ~~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~ 97 (210)
T cd03129 18 LQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSV 97 (210)
T ss_pred HHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHH
Confidence 34444444 5788888875321 23466778889998633333333334567788899999987332 10
Q ss_pred ---C-CchHHHHHHhcCCcEEecC
Q psy15363 70 ---N-GHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 70 ---~-~g~~~lEAla~G~PvV~~~ 89 (130)
+ .--.+.+..+-|+|++...
T Consensus 98 l~~t~~~~~i~~~~~~G~v~~G~S 121 (210)
T cd03129 98 LRETPLLDAILKRVARGVVIGGTS 121 (210)
T ss_pred HHhCChHHHHHHHHHcCCeEEEcC
Confidence 1 1124677777899999764
No 191
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=87.77 E-value=2 Score=28.09 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=27.2
Q ss_pred HHHHHhhCCCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCEE
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRIL 43 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv~ 43 (130)
..+|++..|+-+++++|++|. +-+.-.+.++++ ++||.
T Consensus 55 i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~---P~~i~ 93 (100)
T PF09949_consen 55 IERILRDFPERKFILIGDSGQHDPEIYAEIARRF---PGRIL 93 (100)
T ss_pred HHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHC---CCCEE
Confidence 467899999999999998654 344555666666 36654
No 192
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=87.32 E-value=1 Score=35.31 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=54.6
Q ss_pred hhCCCcEEEEeecCcccHHHHHHHHHH-cCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEE
Q psy15363 8 KAVPNSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV 86 (130)
Q Consensus 8 ~~~P~a~l~i~g~~~~~~~~l~~~~~~-~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV 86 (130)
...++..|++..++ . .+..... .... ++|++...-+ ++..++..+|+++.=+ +.+..|++.+++|||
T Consensus 225 ~~~~~~~li~k~Hp--~---~~~~~~~~~~~~-~~i~~~~~~~--~~~~ll~~aDiLITDy----SSi~fD~~~l~KPii 292 (369)
T PF04464_consen 225 LLKNNYVLIIKPHP--N---MKKKFKDFKEDN-SNIIFVSDNE--DIYDLLAAADILITDY----SSIIFDFLLLNKPII 292 (369)
T ss_dssp HHTTTEEEEE--SH--H---HHTT----TT-T-TTEEE-TT-S---HHHHHHT-SEEEESS-----THHHHHGGGT--EE
T ss_pred HhCCCcEEEEEeCc--h---hhhchhhhhccC-CcEEECCCCC--CHHHHHHhcCEEEEec----hhHHHHHHHhCCCEE
Confidence 45567887777763 1 2222222 2333 7888876543 6677788999998333 368999999999999
Q ss_pred ecCCC--chh-hhhHHHHHH-hcCCCCceecCHHHHHHHHHHhc
Q psy15363 87 TLPGE--TLA-SRVAASQLA-TLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 87 ~~~g~--~~~-~r~~~~~l~-~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
...-+ ... .|-. ... ..-.++-++.+.+++++......
T Consensus 293 fy~~D~~~Y~~~rg~--~~~~~~~~pg~~~~~~~eL~~~i~~~~ 334 (369)
T PF04464_consen 293 FYQPDLEEYEKERGF--YFDYEEDLPGPIVYNFEELIEAIENII 334 (369)
T ss_dssp EE-TTTTTTTTTSSB--SS-TTTSSSS-EESSHHHHHHHHTTHH
T ss_pred EEeccHHHHhhccCC--CCchHhhCCCceeCCHHHHHHHHHhhh
Confidence 66332 121 1110 001 11345567888888887665543
No 193
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=86.80 E-value=11 Score=27.88 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=52.5
Q ss_pred hHHHHHhhCCCc----EEEEeecCccc-HH-HHHHHHHHcCCCCCCEEEecCCC---HHHHHHh----------------
Q psy15363 2 SDIFVLKAVPNS----ILWLLKFPAVG-EA-NIQATAQALGLDQHRILFSNVAA---KEEHVRR---------------- 56 (130)
Q Consensus 2 ~w~~il~~~P~a----~l~i~g~~~~~-~~-~l~~~~~~~g~~~~rv~f~g~~~---~~~~~~~---------------- 56 (130)
+|..|++++|+. .+++.|+++-. .. ...+.+...|.+ =.|.+++.-. .+...+.
T Consensus 36 Va~~i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~ 114 (203)
T COG0062 36 VARAILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELE 114 (203)
T ss_pred HHHHHHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEEEeCCCCCccHHHHHHHHHhhcCCcceeecccc
Confidence 577889999974 55666643222 22 233456777854 5677766443 3444333
Q ss_pred --hccccEEEcCC-CCC--Cc-----hHHHHHHh-cCCcEEecC
Q psy15363 57 --GQLADVCLDTP-LCN--GH-----TTSMDVLW-TGTPVVTLP 89 (130)
Q Consensus 57 --~~~~Dv~l~~~-~~~--~g-----~~~lEAla-~G~PvV~~~ 89 (130)
...+|+.+|.. -.+ +. -+++|++- .|+|||+.+
T Consensus 115 ~~~~~~dvIVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVD 158 (203)
T COG0062 115 DEPESADVIVDALFGTGLSGPLREPFASLIEAINASGKPIVAVD 158 (203)
T ss_pred cccccCCEEEEeceecCCCCCCccHHHHHHHHHHhcCCceEEEe
Confidence 33578998874 222 11 35677766 999999874
No 194
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=86.53 E-value=5.8 Score=25.36 Aligned_cols=66 Identities=20% Similarity=0.115 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHH--HHhcCCcEEecCCCchh
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMD--VLWTGTPVVTLPGETLA 94 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lE--Ala~G~PvV~~~g~~~~ 94 (130)
-+.+++.++++|++ -.|...+. .++.......|++|-+.....-..-++ +.-.++||...+...+.
T Consensus 16 ~~ki~~~~~~~~~~-~~v~~~~~---~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~ 83 (96)
T cd05564 16 VKKMKKAAEKRGID-AEIEAVPE---SELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYG 83 (96)
T ss_pred HHHHHHHHHHCCCc-eEEEEecH---HHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcc
Confidence 45788899999986 34444433 344445678999986655444444455 34578999998866443
No 195
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=86.18 E-value=4.4 Score=32.57 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=52.5
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHc----C----CCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchH
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQAL----G----LDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTT 74 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~----g----~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~ 74 (130)
|-+.+++.+....+++.. |.....+++++... | ...=++.++++++.++|-.++-.||+-+ --|=-+
T Consensus 198 ll~~~~~~~~pv~lLvp~-Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~Nf----VRGEDS 272 (371)
T TIGR03837 198 LLDALAQSGSPVHLLVPE-GRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNF----VRGEDS 272 (371)
T ss_pred HHHHHHhCCCCeEEEecC-CccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChhcE----eechhH
Confidence 334444444444455553 45555666655211 1 1112688899999999999999999865 223356
Q ss_pred HHHHHhcCCcEEec
Q psy15363 75 SMDVLWTGTPVVTL 88 (130)
Q Consensus 75 ~lEAla~G~PvV~~ 88 (130)
.+-|.++|+|-|=.
T Consensus 273 FVRAqWAgkPfvWh 286 (371)
T TIGR03837 273 FVRAQWAGKPFVWH 286 (371)
T ss_pred HHHHHHcCCCceee
Confidence 88999999999944
No 196
>KOG0832|consensus
Probab=85.93 E-value=5.7 Score=30.00 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=21.4
Q ss_pred cEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 61 DVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 61 Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
|+++---+....++++||.-+++|+|..
T Consensus 175 D~vvvln~~e~~sAilEA~K~~IPTIgI 202 (251)
T KOG0832|consen 175 DLVVVLNPEENHSAILEAAKMAIPTIGI 202 (251)
T ss_pred ceeEecCcccccHHHHHHHHhCCCeEEE
Confidence 4443334556779999999999999987
No 197
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.90 E-value=7.7 Score=30.72 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=36.5
Q ss_pred CCchHHHHHHhcCCcEEec-CCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 70 NGHTTSMDVLWTGTPVVTL-PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 70 ~~g~~~lEAla~G~PvV~~-~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
+||+..-||...|+|.|.. +|... .....+-..|+ -+-..|+.+-+++|++++.++
T Consensus 259 ~ggTMarEaAlLGtpaIs~~pGkll---~vdk~lie~G~-~~~s~~~~~~~~~a~~~l~~~ 315 (346)
T COG1817 259 AGGTMAREAALLGTPAISCYPGKLL---AVDKYLIEKGL-LYHSTDEIAIVEYAVRNLKYR 315 (346)
T ss_pred CCchHHHHHHHhCCceEEecCCccc---cccHHHHhcCc-eeecCCHHHHHHHHHHHhhch
Confidence 4788999999999999976 55311 01122222222 122367789999999988765
No 198
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=85.68 E-value=4 Score=32.29 Aligned_cols=81 Identities=14% Similarity=0.021 Sum_probs=51.9
Q ss_pred HHHHhhCCCc-EEEEeecCcccHHHHHHHHHHcCCCCCCEEEe--cCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHH
Q psy15363 4 IFVLKAVPNS-ILWLLKFPAVGEANIQATAQALGLDQHRILFS--NVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVL 79 (130)
Q Consensus 4 ~~il~~~P~a-~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~--g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAl 79 (130)
.+.|.+.++. ++++.+.+ .+++++.+++.. ..++.+. ...+.+++.++++.+|++++..+ +.+...+--|+
T Consensus 14 ~~~L~~~~~~~~v~va~r~---~~~~~~~~~~~~--~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~~~v~~~~i 88 (386)
T PF03435_consen 14 ARLLARRGPFEEVTVADRN---PEKAERLAEKLL--GDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFGEPVARACI 88 (386)
T ss_dssp HHHHHCTTCE-EEEEEESS---HHHHHHHHT--T--TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEECC---HHHHHHHHhhcc--ccceeEEEEecCCHHHHHHHHhcCCEEEECCccchhHHHHHHHH
Confidence 4566677766 77777753 456666666532 2455554 33456778899999999999874 53445667789
Q ss_pred hcCCcEEecC
Q psy15363 80 WTGTPVVTLP 89 (130)
Q Consensus 80 a~G~PvV~~~ 89 (130)
..|++.|-..
T Consensus 89 ~~g~~yvD~~ 98 (386)
T PF03435_consen 89 EAGVHYVDTS 98 (386)
T ss_dssp HHT-EEEESS
T ss_pred HhCCCeeccc
Confidence 9999999843
No 199
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=84.82 E-value=3.5 Score=31.32 Aligned_cols=55 Identities=18% Similarity=0.031 Sum_probs=33.9
Q ss_pred ccccEEEcCC-CCCCchHHHHHHhcCCcEEec-CCCchhhhhHHHH---HHhcCCCCceecC
Q psy15363 58 QLADVCLDTP-LCNGHTTSMDVLWTGTPVVTL-PGETLASRVAASQ---LATLGCPELIART 114 (130)
Q Consensus 58 ~~~Dv~l~~~-~~~~g~~~lEAla~G~PvV~~-~g~~~~~r~~~~~---l~~~g~~~~va~~ 114 (130)
..+|+.+|.+ |...--.+..|+..|+|||+. +|-.. .....+ .+..|.+-+++.+
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~--e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSE--EDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCH--HHHHHHHHHHhcCCccEEEECc
Confidence 4589998855 444556789999999999974 34221 122222 2334555566555
No 200
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=84.38 E-value=3.6 Score=28.41 Aligned_cols=67 Identities=22% Similarity=0.192 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHcCCCCCCEEEecCCCH----HHH--------------------------HHhhccccEEEcCCC-----
Q psy15363 24 GEANIQATAQALGLDQHRILFSNVAAK----EEH--------------------------VRRGQLADVCLDTPL----- 68 (130)
Q Consensus 24 ~~~~l~~~~~~~g~~~~rv~f~g~~~~----~~~--------------------------~~~~~~~Dv~l~~~~----- 68 (130)
-|+++++-+++.|++ |.|.+++.. ++. ..++..|||.+--|.
T Consensus 13 WRe~I~~ga~~~~L~---v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrFGekYKQ 89 (144)
T TIGR03646 13 WREEIKEGAKSKNLP---IVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALFGEKYKQ 89 (144)
T ss_pred HHHHHHHHHHHcCCC---eEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEechHHHH
Confidence 478888888888875 788877641 111 245677999986663
Q ss_pred CCCchHHHHHHhcCCcEEecCCCch
Q psy15363 69 CNGHTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 69 ~~~g~~~lEAla~G~PvV~~~g~~~ 93 (130)
|+...-.--|.+.|+|.|++..+.+
T Consensus 90 WNaAfDAg~aaAlgKplI~lh~~~~ 114 (144)
T TIGR03646 90 WNAAFDAGYAAALGKPLIILRPEEL 114 (144)
T ss_pred HHHHhhHHHHHHcCCCeEEecchhc
Confidence 2333334446889999999976543
No 201
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=84.19 E-value=5.6 Score=34.05 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=56.4
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEec-------------------CCCHHHHHHhhccccEEEcCCCCCCchH
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSN-------------------VAAKEEHVRRGQLADVCLDTPLCNGHTT 74 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g-------------------~~~~~~~~~~~~~~Dv~l~~~~~~~g~~ 74 (130)
.++++|++...-..+.+++.+.|+. +.|.+.| +++++-..-.-..+||.+.-=..-.+-.
T Consensus 238 ~il~iGHnv~~~~~i~dyleE~~l~-d~vE~~GlccTA~D~tRy~~~aKvvGpls~ql~~IrsG~aDViVvDEqCir~Di 316 (772)
T COG1152 238 TILVIGHNVAPGTYIMDYLEENGLE-DEVELAGLCCTAIDMTRYDEAAKVVGPLSKQLKVIRSGKADVIVVDEQCIREDI 316 (772)
T ss_pred eEEEeccccccchHHHHHHHhccch-hhhheeeeeeeccccchhhhhhhhhchhhhhhhhhhcCCceEEEecccccchhH
Confidence 4556776533345667777777775 6655544 3332211112234788763223334567
Q ss_pred HHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHH
Q psy15363 75 SMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIA 122 (130)
Q Consensus 75 ~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a 122 (130)
+-||+-.|.|||++.... .+|+++....++++.++..
T Consensus 317 leea~k~g~~vIat~~k~-----------~~gLpD~Td~~~d~iV~~L 353 (772)
T COG1152 317 LEEASKLGIPVIATNEKG-----------MLGLPDVTDEDVDEIVESL 353 (772)
T ss_pred HHHHhccCCceEechhHH-----------hcCCCccccCCHHHHHHHH
Confidence 889999999999876431 2377766666666555543
No 202
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=84.17 E-value=9.2 Score=30.95 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=51.2
Q ss_pred HHHhhCCC-cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH------------------HHHHHhhc--cccEE
Q psy15363 5 FVLKAVPN-SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK------------------EEHVRRGQ--LADVC 63 (130)
Q Consensus 5 ~il~~~P~-a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~------------------~~~~~~~~--~~Dv~ 63 (130)
.++++.|+ .+++-+.. +...+.+.+++++++- +.|.....-.. +.+..+.. .+|++
T Consensus 19 ~vi~~~p~~f~VvaLaa-~~n~~~l~~q~~~f~p--~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~~~~l~~~~~vD~V 95 (385)
T PRK05447 19 DVIRRNPDRFRVVALSA-GKNVELLAEQAREFRP--KYVVVADEEAAKELKEALAAAGIEVLAGEEGLCELAALPEADVV 95 (385)
T ss_pred HHHHhCccccEEEEEEc-CCCHHHHHHHHHHhCC--CEEEEcCHHHHHHHHHhhccCCceEEEChhHHHHHhcCCCCCEE
Confidence 35666774 45444442 3456677777777763 44443332111 22222332 47999
Q ss_pred EcCCC-CCCchHHHHHHhcCCcEEecCCCch
Q psy15363 64 LDTPL-CNGHTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 64 l~~~~-~~~g~~~lEAla~G~PvV~~~g~~~ 93 (130)
+...+ ..+-..+++|+.+|++|.+-..+..
T Consensus 96 v~Ai~G~aGl~ptl~Ai~aGK~VaLANKEsl 126 (385)
T PRK05447 96 VAAIVGAAGLLPTLAAIRAGKRIALANKESL 126 (385)
T ss_pred EEeCcCcccHHHHHHHHHCCCcEEEeCHHHH
Confidence 87765 4455679999999999998655544
No 203
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=84.11 E-value=11 Score=33.16 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=56.9
Q ss_pred hhCCCcEEEEeecCccc----HHHHH---HHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC--C-CCCchHHHH
Q psy15363 8 KAVPNSILWLLKFPAVG----EANIQ---ATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP--L-CNGHTTSMD 77 (130)
Q Consensus 8 ~~~P~a~l~i~g~~~~~----~~~l~---~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~--~-~~~g~~~lE 77 (130)
...|-..+++.|.-.|. ++.++ ..++.-+.- .+|+|++.-+-.--..++..+||-+.++ + +.+||+-+=
T Consensus 519 d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~-lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK 597 (750)
T COG0058 519 DWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNK-LKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMK 597 (750)
T ss_pred CCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhccc-ceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcch
Confidence 34566777777753332 33333 223332332 6899999877544455789999998765 3 568999999
Q ss_pred HHhcCCcEEec-CCCch
Q psy15363 78 VLWTGTPVVTL-PGETL 93 (130)
Q Consensus 78 Ala~G~PvV~~-~g~~~ 93 (130)
++--|.|.+.+ +|.+.
T Consensus 598 ~alNGaltigtlDGanv 614 (750)
T COG0058 598 AALNGALTLGTLDGANV 614 (750)
T ss_pred HHhcCCceeeccccHHH
Confidence 99999999966 66543
No 204
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=83.98 E-value=8.5 Score=27.84 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=48.6
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe-cCCCHH-HHH----------------------HhhccccEEEcCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAKE-EHV----------------------RRGQLADVCLDTP 67 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~-g~~~~~-~~~----------------------~~~~~~Dv~l~~~ 67 (130)
+-+++++|........+++.+++.|...-.=.++ |..+.. ... .....-|+.+-.-
T Consensus 56 ~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~ 135 (193)
T cd01425 56 GGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLD 135 (193)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeC
Confidence 4677888875344556666676655321112344 444532 221 1345677775455
Q ss_pred CCCCchHHHHHHhcCCcEEecCC
Q psy15363 68 LCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 68 ~~~~g~~~lEAla~G~PvV~~~g 90 (130)
|..-...+.||..+|+|+|+.-.
T Consensus 136 ~~~~~~ai~Ea~~l~IP~I~i~D 158 (193)
T cd01425 136 PRKEHQAIREASKLGIPVIAIVD 158 (193)
T ss_pred CccchHHHHHHHHcCCCEEEEec
Confidence 55557889999999999998843
No 205
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.03 E-value=20 Score=28.51 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=79.7
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCC-CCCEEEec----CCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcE
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLD-QHRILFSN----VAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~-~~rv~f~g----~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~Pv 85 (130)
++-.+=++|.+|.++..|-+.++.+.-+ ..+|..-| ..+..++.+.=+..-...--|..-+..|+.|..|+-+-+
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 3456778887788899999999876543 24777777 344555555444444444344444567888888876555
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
-..+......| .+.++.-.|++++... ....-|.+|-+|+++|+
T Consensus 111 ag~~k~ei~~R-V~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~ 161 (339)
T COG1135 111 AGVPKAEIKQR-VAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK 161 (339)
T ss_pred cCCCHHHHHHH-HHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC
Confidence 54433333444 4678888999987653 45788999999999985
No 206
>KOG1387|consensus
Probab=82.93 E-value=7.5 Score=31.44 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=51.7
Q ss_pred hHHHH---HhhCCCcEEEEeecC-cc-cHHHHHHHHHHcCC--CCCCEEEecC-----CC--HH---------------H
Q psy15363 2 SDIFV---LKAVPNSILWLLKFP-AV-GEANIQATAQALGL--DQHRILFSNV-----AA--KE---------------E 52 (130)
Q Consensus 2 ~w~~i---l~~~P~a~l~i~g~~-~~-~~~~l~~~~~~~g~--~~~rv~f~g~-----~~--~~---------------~ 52 (130)
+|..+ .++.||.+.++..+. .. ..+.|++.-+..++ ++++|.|.-- ++ .. .
T Consensus 63 LW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVea~~~~hfTllgQaigsmIl~ 142 (465)
T KOG1387|consen 63 LWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVEASTWKHFTLLGQAIGSMILA 142 (465)
T ss_pred hhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeeecccccceehHHHHHHHHHHH
Confidence 35544 578999999988742 11 23455555556664 4578877521 11 01 1
Q ss_pred HHHhhcc-ccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 53 HVRRGQL-ADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 53 ~~~~~~~-~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
+-++++. -|||+||..+.+.-.++-. -.+.||++.-
T Consensus 143 ~Eai~r~~Pdi~IDtMGY~fs~p~~r~-l~~~~V~aYv 179 (465)
T KOG1387|consen 143 FEAIIRFPPDIFIDTMGYPFSYPIFRR-LRRIPVVAYV 179 (465)
T ss_pred HHHHHhCCchheEecCCCcchhHHHHH-HccCceEEEE
Confidence 1233333 5999999766555555544 6799999873
No 207
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=82.75 E-value=25 Score=28.78 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=63.6
Q ss_pred EEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC---CHHHHHHhhcc---cc---EEEcCCCCCCc-hHHHHHHhcCCc
Q psy15363 15 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVA---AKEEHVRRGQL---AD---VCLDTPLCNGH-TTSMDVLWTGTP 84 (130)
Q Consensus 15 l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~---~~~~~~~~~~~---~D---v~l~~~~~~~g-~~~lEAla~G~P 84 (130)
+-+++.+|..-..+-.++.+.|+....++=+|.- +..|++.++.. .. +|+.+...+.. ...+...+.++|
T Consensus 153 valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa~~a~~~KP 232 (447)
T TIGR02717 153 IAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAREISKKKP 232 (447)
T ss_pred EEEEechHHHHHHHHHHHHhcCCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHHHHHHcCCCC
Confidence 3444433333345667778878776778878753 46778777754 33 33444332211 234444455999
Q ss_pred EEecCC-Cchhhhh---------------HHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 85 VVTLPG-ETLASRV---------------AASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 85 vV~~~g-~~~~~r~---------------~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
||.++. ++-.++- -.++++..|+ ...+|.+|+.+.+.-|..
T Consensus 233 Vv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv--~~~~~~~el~~~~~~l~~ 289 (447)
T TIGR02717 233 IVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGV--IRADSIEELFDLARLLSN 289 (447)
T ss_pred EEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCe--EEeCCHHHHHHHHHHHhc
Confidence 999854 4322221 1123333332 556899999999887764
No 208
>PRK06270 homoserine dehydrogenase; Provisional
Probab=82.24 E-value=19 Score=28.38 Aligned_cols=65 Identities=18% Similarity=0.017 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCC--C----chHHHHHHhcCCcEEecCC
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN--G----HTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~--~----g~~~lEAla~G~PvV~~~g 90 (130)
.+.+.++.++.|.....-......+.+++..- ..+|++++..|.. + -..+.+|+..|++|||...
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK 126 (341)
T PRK06270 56 LELALKVKEETGKLADYPEGGGEISGLEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNK 126 (341)
T ss_pred HHHHHHHHhccCCcccCccccccCCHHHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCc
Confidence 44556665655531010000012244554321 3589999865432 1 2346899999999999643
No 209
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=82.17 E-value=5.7 Score=25.45 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=46.0
Q ss_pred EEEEeecCccc----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh--cCCcEEe
Q psy15363 14 ILWLLKFPAVG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVT 87 (130)
Q Consensus 14 ~l~i~g~~~~~----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla--~G~PvV~ 87 (130)
+++++++.|-. -..+++.++++|++ -.|.-. +..++.......|++|-+.....-..-++..+ .|+||++
T Consensus 5 ~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~---~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 5 NILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAG---SYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEe---cHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEE
Confidence 45555544432 35788889999986 333333 33445555678899986665444444555554 4679999
Q ss_pred cCCC
Q psy15363 88 LPGE 91 (130)
Q Consensus 88 ~~g~ 91 (130)
.+..
T Consensus 81 I~~~ 84 (95)
T TIGR00853 81 INGA 84 (95)
T ss_pred eChh
Confidence 8764
No 210
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=82.10 E-value=6.6 Score=34.64 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=42.4
Q ss_pred CEEEecCCCHHHHHHhhccccEEEcCC--C-CCCchHHHHHHhcCCcEEec-CCCch
Q psy15363 41 RILFSNVAAKEEHVRRGQLADVCLDTP--L-CNGHTTSMDVLWTGTPVVTL-PGETL 93 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv~l~~~--~-~~~g~~~lEAla~G~PvV~~-~g~~~ 93 (130)
+|+|+..-.-.--..++..|||.+..+ + +.+||+-+=+|.-|.+.+++ +|.+.
T Consensus 607 kVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanv 663 (794)
T TIGR02093 607 KVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV 663 (794)
T ss_pred eEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhH
Confidence 899999877555556789999998765 3 56899999999999999966 66544
No 211
>KOG3349|consensus
Probab=81.95 E-value=6.2 Score=28.04 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=34.4
Q ss_pred HhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhc
Q psy15363 55 RRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATL 105 (130)
Q Consensus 55 ~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~ 105 (130)
..++.||+.+ ...|.-+.+|.+..|+|.|+...+..-..+...+...+
T Consensus 76 e~I~~AdlVI---sHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL 123 (170)
T KOG3349|consen 76 EDIRSADLVI---SHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQL 123 (170)
T ss_pred HHHhhccEEE---ecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHH
Confidence 3456799987 23455679999999999988877766666665554443
No 212
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=81.90 E-value=25 Score=28.32 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=60.6
Q ss_pred HHHHHcCCCC-CCEEEecCCCHHHHHHhhcc------ccEEEcCCC--CCCchHHHHHHh-------cCCcEEecCCCch
Q psy15363 30 ATAQALGLDQ-HRILFSNVAAKEEHVRRGQL------ADVCLDTPL--CNGHTTSMDVLW-------TGTPVVTLPGETL 93 (130)
Q Consensus 30 ~~~~~~g~~~-~rv~f~g~~~~~~~~~~~~~------~Dv~l~~~~--~~~g~~~lEAla-------~G~PvV~~~g~~~ 93 (130)
..+..+|..+ +-+.+.|..+.+.+...++. +|..+-... ......+.+++. .++|+|+.-.. .
T Consensus 274 D~i~~~gg~paNPlDlgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G-~ 352 (392)
T PRK14046 274 DMIKLAGGEPANFLDVGGGASPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAG-T 352 (392)
T ss_pred HHHHhcCCCCcCCEEecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCC-C
Confidence 5567777665 45777555555555444432 456642222 122233555544 57899876433 2
Q ss_pred hhhhHHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 94 ASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 94 ~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
....+..+++..|++-+..+|.++=+++|+++++
T Consensus 353 ~~e~~~~iL~~~Gipvf~~~~~~~a~~~~v~~~~ 386 (392)
T PRK14046 353 NVEEGRKILAESGLPIITADTLAEAAEKAVEAWK 386 (392)
T ss_pred CHHHHHHHHHHcCCCeeecCCHHHHHHHHHHHHh
Confidence 2334566788889999999999999999999875
No 213
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=81.82 E-value=17 Score=27.60 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH-hcCCcEEecCCCc--hh-hhhHHHH
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL-WTGTPVVTLPGET--LA-SRVAASQ 101 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl-a~G~PvV~~~g~~--~~-~r~~~~~ 101 (130)
..|++.++++|+. ++.-..+.++...+...+|++-=++....-..+++++ ..|+||+...|-. +. -......
T Consensus 79 ~~l~~~~~~~Gl~----~~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 154 (260)
T TIGR01361 79 KLLRRAADEHGLP----VVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEY 154 (260)
T ss_pred HHHHHHHHHhCCC----EEEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 4566777788875 3333333333333334588884344333334455555 4699999998854 21 1224455
Q ss_pred HHhcCCCC
Q psy15363 102 LATLGCPE 109 (130)
Q Consensus 102 l~~~g~~~ 109 (130)
+...|.++
T Consensus 155 i~~~Gn~~ 162 (260)
T TIGR01361 155 ILSSGNGN 162 (260)
T ss_pred HHHcCCCc
Confidence 66667765
No 214
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=81.20 E-value=20 Score=28.28 Aligned_cols=82 Identities=16% Similarity=0.003 Sum_probs=49.7
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCC-------------CCEEEecCCCHHHHHHhhccccEEEcCCC-
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQ-------------HRILFSNVAAKEEHVRRGQLADVCLDTPL- 68 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~-------------~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~- 68 (130)
..+.+.+.|+..|+-+.+. ..+....+++++|.+. ..+.+.+. ...++..+|+.++..+
T Consensus 16 va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~-----~~el~~~vDVVIdaT~~ 88 (341)
T PRK04207 16 VADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGT-----IEDLLEKADIVVDATPG 88 (341)
T ss_pred HHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCCccccCccccccccCCceEEcCC-----hhHhhccCCEEEECCCc
Confidence 4566677899998877752 2344555566565320 11222222 2233467999998665
Q ss_pred CCCchHHHHHHhcCCcEEecCCC
Q psy15363 69 CNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 69 ~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
+...-..-.+..+|+|||...+.
T Consensus 89 ~~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 89 GVGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred hhhHHHHHHHHHCCCEEEEcCCC
Confidence 44444556678889999988764
No 215
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=81.00 E-value=22 Score=31.09 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=37.5
Q ss_pred CEEEecCCCHHHHHHhhccccEEEcCC--C-CCCchHHHHHHhcCCcEEec-CCC
Q psy15363 41 RILFSNVAAKEEHVRRGQLADVCLDTP--L-CNGHTTSMDVLWTGTPVVTL-PGE 91 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv~l~~~--~-~~~g~~~lEAla~G~PvV~~-~g~ 91 (130)
||+|+..-+-.--..++..+||.+.++ | +.+||+-+=++.-|.+.+++ +|.
T Consensus 524 kVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~ 578 (713)
T PF00343_consen 524 KVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGW 578 (713)
T ss_dssp EEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTC
T ss_pred eEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccch
Confidence 799999887665566789999999866 4 46899999999999999977 554
No 216
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=80.93 E-value=19 Score=27.40 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH-hcCCcEEecCCCch--h-hhhHHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL-WTGTPVVTLPGETL--A-SRVAAS 100 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl-a~G~PvV~~~g~~~--~-~r~~~~ 100 (130)
.+.|++..+++|+. +++-..+.++...+...+|++==++....-..+++++ ..|+||+..+|-.. . -...+.
T Consensus 68 l~~L~~~~~~~Gl~----~~Tev~d~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e 143 (250)
T PRK13397 68 IRYLHEVCQEFGLL----SVSEIMSERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALS 143 (250)
T ss_pred HHHHHHHHHHcCCC----EEEeeCCHHHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHH
Confidence 35677788898986 4444445444444445699983343333336677776 56999999988322 1 122455
Q ss_pred HHHhcCCCC
Q psy15363 101 QLATLGCPE 109 (130)
Q Consensus 101 ~l~~~g~~~ 109 (130)
.+...|.++
T Consensus 144 ~i~~~Gn~~ 152 (250)
T PRK13397 144 YLQDTGKSN 152 (250)
T ss_pred HHHHcCCCe
Confidence 566667765
No 217
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=79.77 E-value=2.5 Score=31.09 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCE
Q psy15363 5 FVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRI 42 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv 42 (130)
+++...-..-|+++|+ ..+.+.|+.++++++|++++|
T Consensus 129 ~l~a~~~~~Diylvgs-~~dD~~Ir~WA~~~~Idp~~V 165 (200)
T TIGR03759 129 RLLADNAPLDLYLVGS-QGDDERIRQWANRHQIDPAKV 165 (200)
T ss_pred HHhcCCCceeEEEecC-CCCHHHHHHHHHHcCCCHHHe
Confidence 3444444577889995 456788999999999986554
No 218
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=79.53 E-value=3.9 Score=29.14 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=22.7
Q ss_pred ccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 58 QLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 58 ~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
..-|++|||| .|+|+|...|.-+|.--|...
T Consensus 190 ~~gdiVlDpF-~GSGTT~~aa~~l~R~~ig~E 220 (231)
T PF01555_consen 190 NPGDIVLDPF-AGSGTTAVAAEELGRRYIGIE 220 (231)
T ss_dssp -TT-EEEETT--TTTHHHHHHHHTT-EEEEEE
T ss_pred ccceeeehhh-hccChHHHHHHHcCCeEEEEe
Confidence 3489999998 467899999999998887643
No 219
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=79.10 E-value=5.4 Score=25.49 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=34.1
Q ss_pred HHHHHhhCCCcEEEEeecCcc---c---------H-HHHHHHHHHcCCCCCCEEEecCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---G---------E-ANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~---------~-~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
+++++++.|+..+.|.|.... . + ..+++++.++|++++|+...|+-
T Consensus 22 ~a~~l~~~~~~~i~I~Ghtd~~g~~~~N~~LS~~RA~~V~~~L~~~gi~~~ri~~~g~G 80 (104)
T TIGR02802 22 HAAYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQAKGVSASQIETVSYG 80 (104)
T ss_pred HHHHHHHCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEeec
Confidence 678899999999999996321 1 1 24567777889998898887753
No 220
>PRK06091 membrane protein FdrA; Validated
Probab=77.68 E-value=25 Score=29.84 Aligned_cols=107 Identities=17% Similarity=0.074 Sum_probs=64.6
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC---------CHHHHHHhhcc---ccEE---EcCCCCCCchHHHHH
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA---------AKEEHVRRGQL---ADVC---LDTPLCNGHTTSMDV 78 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~---------~~~~~~~~~~~---~Dv~---l~~~~~~~g~~~lEA 78 (130)
.+-+++.+|..-..+-.++.+.|+--.+++=+|.. +..|++.++.. ..+. +-|..++-.-..+++
T Consensus 195 ~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~~fl~a 274 (555)
T PRK06091 195 NIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKIINA 274 (555)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHHHHHHH
Confidence 34456654555556777788877765667767765 35666666643 3333 323223334466665
Q ss_pred H-hcCCcEEecC-CCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccC
Q psy15363 79 L-WTGTPVVTLP-GETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 79 l-a~G~PvV~~~-g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
+ .+|+|||++. |..-.++ + -.+-+.+++.+|.++.|..|++-
T Consensus 275 ar~~~KPVVvlk~Grs~~g~------~--q~GVi~a~tleEl~~~A~~la~~ 318 (555)
T PRK06091 275 MKATGKPVVALFLGYTPAVA------R--DENVWFASTLDEAARLACLLSRV 318 (555)
T ss_pred HhhCCCCEEEEEecCCchhh------h--cCCeEEeCCHHHHHHHHHHHhcc
Confidence 4 5699999985 4333222 1 11235679999999999988753
No 221
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=77.29 E-value=6.7 Score=30.62 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=50.4
Q ss_pred CcEEEEeecCcc-c----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcC-CCCCCchHHHHHHhcCCcE
Q psy15363 12 NSILWLLKFPAV-G----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 12 ~a~l~i~g~~~~-~----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~-~~~~~g~~~lEAla~G~Pv 85 (130)
+..=+++|+-+. . -++++++++++|.. -.++.+|..+.+.+..+ ..|+|+.+ .|. +++.+.-..-+||
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk-~y~i~~~~in~~kL~nf--~iD~fV~~aCPr---~sidd~~~f~kPv 286 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEELGKE-ALLILLDNISPDQLRNL--DFDAYVNTACPR---IAIDDYARFKKPV 286 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHHcCCe-EEEEEeCCCCHHHHhcC--CcCEEEEccCCC---cccccHhhCCCcc
Confidence 344456775321 1 35788889999986 67888999998877554 59999754 364 4566777788999
Q ss_pred Eec
Q psy15363 86 VTL 88 (130)
Q Consensus 86 V~~ 88 (130)
||.
T Consensus 287 lTP 289 (308)
T TIGR03682 287 LTP 289 (308)
T ss_pred cCH
Confidence 984
No 222
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=76.33 E-value=26 Score=27.31 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=27.6
Q ss_pred HHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCch
Q psy15363 53 HVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 53 ~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~ 93 (130)
|..++..||.++.|- .+-+...||.+.|+||-+..-.++
T Consensus 238 Y~~~La~Adyii~Ta--DSinM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 238 YIDMLAAADYIISTA--DSINMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred hHHHHhhcceEEEec--chhhhhHHHhccCCCeEEEecCCc
Confidence 556667788777443 233567899999999998865544
No 223
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=76.28 E-value=8.8 Score=26.87 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=34.1
Q ss_pred chHHHHHH-hcCCcEEecC-----------CCchhhhhHHHHHHhcCCCCceecCHHHH
Q psy15363 72 HTTSMDVL-WTGTPVVTLP-----------GETLASRVAASQLATLGCPELIARTHKEY 118 (130)
Q Consensus 72 g~~~lEAl-a~G~PvV~~~-----------g~~~~~r~~~~~l~~~g~~~~va~~~~~y 118 (130)
-+.+.+|. ..++|||... +....++++...++.++++-....+.++.
T Consensus 73 ~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i~~~~i~~~e~~ 131 (157)
T TIGR03845 73 INALASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGIPYTIPREPEEA 131 (157)
T ss_pred HHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCCCeEEeCCHHHH
Confidence 45678999 9999999887 44445667777888888875555555544
No 224
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=76.22 E-value=14 Score=26.73 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=65.0
Q ss_pred HHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC---HHHHHHhh--ccccEEEcCCCCCCchHHHH---
Q psy15363 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---KEEHVRRG--QLADVCLDTPLCNGHTTSMD--- 77 (130)
Q Consensus 6 il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~---~~~~~~~~--~~~Dv~l~~~~~~~g~~~lE--- 77 (130)
+.+..++.++++..++ ..++.|.+.+++.|..-.++..--..+ ..++...+ ...|+++.+++.+-- ..++
T Consensus 111 l~~~~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~~~~v~ftS~~~~~-~~~~~~~ 188 (231)
T PF02602_consen 111 LKEQLRGKRVLILRGE-GGRPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGEIDAVVFTSPSAVR-AFLELLK 188 (231)
T ss_dssp HHHCCTTEEEEEEESS-SSCHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTTTSEEEESSHHHHH-HHHHHSS
T ss_pred HHhhCCCCeEEEEcCC-CccHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCCCCEEEECCHHHHH-HHHHHhH
Confidence 3335566677776643 456788999999997655655555411 23444444 457999988864311 1122
Q ss_pred ---HHhcCCcEEecCCCchhhhhHHHHHHhcCCCC-ceec--CHHHHH
Q psy15363 78 ---VLWTGTPVVTLPGETLASRVAASQLATLGCPE-LIAR--THKEYQ 119 (130)
Q Consensus 78 ---Ala~G~PvV~~~g~~~~~r~~~~~l~~~g~~~-~va~--~~~~y~ 119 (130)
.....+++++.. ..++..++..|.+. .+++ +.++.+
T Consensus 189 ~~~~~~~~~~~~~ig------~~ta~~l~~~g~~~~~va~~~~~~~lv 230 (231)
T PF02602_consen 189 KNGALLKRVPIVAIG------PRTAKALRELGFKVDIVAERPTIEALV 230 (231)
T ss_dssp GHHHHHTTSEEEESS------HHHHHHHHHTT-SCSEEESSSSHHHHH
T ss_pred hhhhhhhCCEEEEEC------HHHHHHHHHcCCCceEECCCCChhHhh
Confidence 356788888853 45777888899987 5654 445444
No 225
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=75.95 E-value=13 Score=26.07 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----c-EEEcCCCCC-CchHHHHHHh-cCCcEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVLW-TGTPVVTL 88 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----D-v~l~~~~~~-~g~~~lEAla-~G~PvV~~ 88 (130)
+.+++.++++|+ .+.|.-.=...++..+++.+ | +.++|--|+ .+..+.||+. .++|+|=.
T Consensus 33 ~~~~~~a~~~g~---~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEV 99 (146)
T PRK05395 33 ALLEEEAAELGV---ELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEV 99 (146)
T ss_pred HHHHHHHHHcCC---EEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEE
Confidence 456666677776 37777666667777777665 3 557777776 4788999985 68999844
No 226
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=75.52 E-value=11 Score=28.43 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=54.6
Q ss_pred HHHhhCCCcEEEEeecCc----ccHHHHHHHHHHcCCCCCCEEEecC--CCHHHHH---HhhccccEEEcCCCCCCchHH
Q psy15363 5 FVLKAVPNSILWLLKFPA----VGEANIQATAQALGLDQHRILFSNV--AAKEEHV---RRGQLADVCLDTPLCNGHTTS 75 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~----~~~~~l~~~~~~~g~~~~rv~f~g~--~~~~~~~---~~~~~~Dv~l~~~~~~~g~~~ 75 (130)
++.++.|..++++-|+++ ++-+.+++.+.++|+++++|+.-.. -+.+... .++..-++.+-|..|...-++
T Consensus 75 ~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~fHm~RA~ 154 (239)
T PRK10834 75 NAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERAL 154 (239)
T ss_pred HHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCHHHHHHHH
Confidence 455677777887777532 2245678889999998666665432 2334332 233333466667777666677
Q ss_pred HHHHhcCCcEEecC
Q psy15363 76 MDVLWTGTPVVTLP 89 (130)
Q Consensus 76 lEAla~G~PvV~~~ 89 (130)
.-|-..|..+++..
T Consensus 155 ~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 155 FIALHMGIQAQCYA 168 (239)
T ss_pred HHHHHcCCceEEEe
Confidence 77888899888764
No 227
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=75.32 E-value=2.4 Score=24.99 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=21.2
Q ss_pred CCCCchHHHHHHhcCCcEEecCCCch
Q psy15363 68 LCNGHTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 68 ~~~~g~~~lEAla~G~PvV~~~g~~~ 93 (130)
+|..-..+.|++-+|.||+++=|..|
T Consensus 10 HYv~K~kI~esav~G~pVvALCGk~w 35 (58)
T PF11238_consen 10 HYVRKDKIAESAVMGTPVVALCGKVW 35 (58)
T ss_pred eecchhHHHHHHhcCceeEeeeCcee
Confidence 45556779999999999999987755
No 228
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=74.87 E-value=33 Score=25.75 Aligned_cols=100 Identities=19% Similarity=0.091 Sum_probs=53.8
Q ss_pred HHHhhCCCcEEEEeecCccc--HHHHHHHHHHcCCCCCCEE--------EecCCCHHHHHHhhcc-----ccEEEcCCCC
Q psy15363 5 FVLKAVPNSILWLLKFPAVG--EANIQATAQALGLDQHRIL--------FSNVAAKEEHVRRGQL-----ADVCLDTPLC 69 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~--~~~l~~~~~~~g~~~~rv~--------f~g~~~~~~~~~~~~~-----~Dv~l~~~~~ 69 (130)
+.++..---|+-++. |... .+.+++++++.|++--.+. =.++++.+.+...... +|..+-+..-
T Consensus 113 ~AL~alg~~RIalvT-PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTn 191 (239)
T TIGR02990 113 DGLAALGVRRISLLT-PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTA 191 (239)
T ss_pred HHHHHcCCCEEEEEC-CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 445555434655554 4432 4678888888887522221 1445777766665553 5544322111
Q ss_pred CCchHHHHHH--hcCCcEEecCCCchhhhhHHHHHHhcCCCCc
Q psy15363 70 NGHTTSMDVL--WTGTPVVTLPGETLASRVAASQLATLGCPEL 110 (130)
Q Consensus 70 ~~g~~~lEAl--a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~ 110 (130)
-...-+++.+ ..|+|||+...- ....+|+..|++.-
T Consensus 192 Lrt~~vi~~lE~~lGkPVlsSNqa-----t~W~~Lr~~G~~~~ 229 (239)
T TIGR02990 192 LRAATCAQRIEQAIGKPVVTSNQA-----TAWRCLRLCGDPDM 229 (239)
T ss_pred chhHHHHHHHHHHHCCCEEEHHHH-----HHHHHHHHcCCCCC
Confidence 1123344443 269999996532 23556777777653
No 229
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=74.70 E-value=31 Score=25.28 Aligned_cols=86 Identities=13% Similarity=0.005 Sum_probs=50.0
Q ss_pred hHHHHHhhC--CCcEEEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCC-----CHHHHHHhhccccEEEcC----
Q psy15363 2 SDIFVLKAV--PNSILWLLKFPAV----GEANIQATAQALGLDQHRILFSNVA-----AKEEHVRRGQLADVCLDT---- 66 (130)
Q Consensus 2 ~w~~il~~~--P~a~l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~-----~~~~~~~~~~~~Dv~l~~---- 66 (130)
+|.++++.. ++.+++++..... ..+...+.++++|+. .+.++... ...+..+.+..+|+..-+
T Consensus 17 i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~--~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~ 94 (217)
T cd03145 17 ILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAR--EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQ 94 (217)
T ss_pred HHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCc--eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcH
Confidence 355566555 4778888875321 134566777888874 44443322 345667788899998622
Q ss_pred CCCC---Cc----hHHHHHHhcCCcEEecC
Q psy15363 67 PLCN---GH----TTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 67 ~~~~---~g----~~~lEAla~G~PvV~~~ 89 (130)
+.+. .+ ..+-++...|+|++...
T Consensus 95 ~~~~~~l~~t~l~~~l~~~~~~G~v~~G~S 124 (217)
T cd03145 95 LRITSALGGTPLLDALRKVYRGGVVIGGTS 124 (217)
T ss_pred HHHHHHHcCChHHHHHHHHHHcCCEEEEcc
Confidence 1100 11 12445667899998654
No 230
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=74.61 E-value=16 Score=22.52 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
..++++.+.++++. ..+..... .++...+..+|+++.|.+... ..++|+|..
T Consensus 18 ~~~i~~~~~~~~i~-~~v~~~~~---~~~~~~~~~~Dliist~~~~~--------~~~~p~i~v 69 (89)
T cd05566 18 ASKVKELLKENGID-VKVEQCKI---AEVPSLLDDADLIVSTTKVPE--------DYGIPVING 69 (89)
T ss_pred HHHHHHHHHHCCCc-eEEEEecH---HHhhcccCCCcEEEEcCCcCC--------CCCCCEEEE
Confidence 45788888888885 55554332 333334578999998887643 225788854
No 231
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=74.18 E-value=23 Score=29.36 Aligned_cols=73 Identities=8% Similarity=-0.037 Sum_probs=49.3
Q ss_pred EEEEeecC-cccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 14 ILWLLKFP-AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 14 ~l~i~g~~-~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
.+.++|+= ......+++++++.|+. -+.|++....+|+..+- .+.+.+-.+||.+.+...=+--+|+|.+..+
T Consensus 195 ~vnl~G~~~~~~~~~i~~lL~~lGI~--v~~~lp~~~~~eL~~~~-~~~~~c~~~P~ls~aa~~Le~~~gvp~~~~P 268 (457)
T CHL00073 195 PLVLFGSLPSTVASQLTLELKRQGIK--VSGWLPSQRYTDLPSLG-EGVYVCGVNPFLSRTATTLMRRRKCKLIGAP 268 (457)
T ss_pred cEEEEEecCcccHHHHHHHHHHcCCe--EeEEeCCCCHHHHHhhC-cccEEEEcCcchHHHHHHHHHHhCCceeecC
Confidence 47778852 22467899999999995 33666666678887655 6666676788866333222236799998875
No 232
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=74.00 E-value=30 Score=26.39 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=67.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHH-cCCCCCCEEEecCCCHHHHHHhhccccEE-E---cCCCCCCchHHHHHHhcCCcE
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVC-L---DTPLCNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~-~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l---~~~~~~~g~~~lEAla~G~Pv 85 (130)
++..+-++|.+|.++..|-+.+-- +--...+|.+.|.-...... .--|- + ..+.+++++|+.|-+.+|..-
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~----~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~ 104 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK----RLRIGYVPQKSSVDRSFPITVKDVVLLGRYG 104 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc----CCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence 457788999888888887776542 22222578876653221110 00111 1 124567889999999999432
Q ss_pred Ee-cCCCc-hh-hhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 86 VT-LPGET-LA-SRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 86 V~-~~g~~-~~-~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
=. .-+.. -. -......|+..|+.++... ....=+-+|..|++||+
T Consensus 105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ 159 (254)
T COG1121 105 KKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPD 159 (254)
T ss_pred cccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCC
Confidence 11 00000 00 1234566788888876543 35667778888888885
No 233
>PRK08618 ornithine cyclodeaminase; Validated
Probab=73.19 E-value=15 Score=28.70 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=45.2
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH--------------------HHHHHhhccccEEEcCCCCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK--------------------EEHVRRGQLADVCLDTPLCNG 71 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~--------------------~~~~~~~~~~Dv~l~~~~~~~ 71 (130)
..++.++|.++..+..++.++...++ ++|.+.++-+. ++....++.+|+++..-|...
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~--~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDI--ERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCc--cEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC
Confidence 45677777643344455444444444 45555544321 112334467899987666555
Q ss_pred chHHHHHHhcCCcEEecCCC
Q psy15363 72 HTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 72 g~~~lEAla~G~PvV~~~g~ 91 (130)
.... +.+-.|+-|+.....
T Consensus 205 p~i~-~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 205 PVFS-EKLKKGVHINAVGSF 223 (325)
T ss_pred cchH-HhcCCCcEEEecCCC
Confidence 5556 888999999877543
No 234
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.19 E-value=3.8 Score=32.92 Aligned_cols=73 Identities=12% Similarity=0.012 Sum_probs=48.3
Q ss_pred HHHHHhhccccEEEcCC--CC--CC---chHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHH
Q psy15363 51 EEHVRRGQLADVCLDTP--LC--NG---HTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAI 123 (130)
Q Consensus 51 ~~~~~~~~~~Dv~l~~~--~~--~~---g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~ 123 (130)
..+...++.-|+++.-. +. ++ .+-+.|+++||.|.+|-.-....+... -|-.-.+++|..|+.+++.
T Consensus 249 ~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~------pgk~~iv~~d~kdl~~~~~ 322 (373)
T COG4641 249 DGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFK------PGKDIIVYQDSKDLKEKLK 322 (373)
T ss_pred chhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcC------CchheEEecCHHHHHHHHH
Confidence 55566666777776422 21 22 567999999999999865432222221 2334477899999999999
Q ss_pred HhccCC
Q psy15363 124 RLGTDR 129 (130)
Q Consensus 124 ~l~~d~ 129 (130)
.+++-+
T Consensus 323 yll~h~ 328 (373)
T COG4641 323 YLLNHP 328 (373)
T ss_pred HHhcCc
Confidence 888754
No 235
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.88 E-value=40 Score=25.77 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHH-HHHhcCCcEEecCCCc--hh-hhhHHH
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSM-DVLWTGTPVVTLPGET--LA-SRVAAS 100 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~l-EAla~G~PvV~~~g~~--~~-~r~~~~ 100 (130)
..+++..++.|+. +++-..+..+...+...+|++ +-++.... ..++ ++-..|+||+..+|.. .. -...+.
T Consensus 81 ~~l~~~~~~~Gl~----~~te~~d~~~~~~l~~~vd~~kIga~~~~n-~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e 155 (266)
T PRK13398 81 KILKEVGDKYNLP----VVTEVMDTRDVEEVADYADMLQIGSRNMQN-FELLKEVGKTKKPILLKRGMSATLEEWLYAAE 155 (266)
T ss_pred HHHHHHHHHcCCC----EEEeeCChhhHHHHHHhCCEEEECcccccC-HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 4566777788875 333333333332233447877 43333332 3344 4445799999998854 21 122345
Q ss_pred HHHhcCCCC
Q psy15363 101 QLATLGCPE 109 (130)
Q Consensus 101 ~l~~~g~~~ 109 (130)
.+..-|.++
T Consensus 156 ~i~~~Gn~~ 164 (266)
T PRK13398 156 YIMSEGNEN 164 (266)
T ss_pred HHHhcCCCe
Confidence 566667766
No 236
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=72.86 E-value=45 Score=26.64 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHh-cCCcEEecCCCc--hhh-hhHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLW-TGTPVVTLPGET--LAS-RVAA 99 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla-~G~PvV~~~g~~--~~~-r~~~ 99 (130)
...|++.++++|+. +++-..+..+...+...+|++ +-++.... ..++++++ .|+||+...|-. +.. ....
T Consensus 171 l~~L~~~~~~~Gl~----~~t~v~d~~~~~~l~~~vd~lkI~s~~~~n-~~LL~~~a~~gkPVilk~G~~~t~~e~~~Av 245 (360)
T PRK12595 171 LKILKQVADEYGLA----VISEIVNPADVEVALDYVDVIQIGARNMQN-FELLKAAGRVNKPVLLKRGLSATIEEFIYAA 245 (360)
T ss_pred HHHHHHHHHHcCCC----EEEeeCCHHHHHHHHHhCCeEEECcccccC-HHHHHHHHccCCcEEEeCCCCCCHHHHHHHH
Confidence 34677888899986 344444444444444559999 54443333 55666554 699999998852 222 1234
Q ss_pred HHHHhcCCCC
Q psy15363 100 SQLATLGCPE 109 (130)
Q Consensus 100 ~~l~~~g~~~ 109 (130)
..+...|.++
T Consensus 246 e~i~~~Gn~~ 255 (360)
T PRK12595 246 EYIMSQGNGQ 255 (360)
T ss_pred HHHHHCCCCC
Confidence 4555667765
No 237
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=72.77 E-value=9.8 Score=25.82 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=26.4
Q ss_pred HHHHHhhCCCcEEEEeecCcc---cHHHHHHHHHHcCCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---GEANIQATAQALGLD 38 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~~~~l~~~~~~~g~~ 38 (130)
|.++++..|+..++++|.+.. -.+.++..+++.||.
T Consensus 60 f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIs 98 (127)
T COG3737 60 FERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGIS 98 (127)
T ss_pred HHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCc
Confidence 678888888888888886421 135677778888876
No 238
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=72.64 E-value=45 Score=29.66 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=42.1
Q ss_pred CEEEecCCCHHHHHHhhccccEEEcCC--C-CCCchHHHHHHhcCCcEEec-CCCch
Q psy15363 41 RILFSNVAAKEEHVRRGQLADVCLDTP--L-CNGHTTSMDVLWTGTPVVTL-PGETL 93 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv~l~~~--~-~~~g~~~lEAla~G~PvV~~-~g~~~ 93 (130)
+|.|+..-.-.--..++..|||.+..+ + +.+||+-+=+|.-|.+.+++ +|.+.
T Consensus 610 kVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanv 666 (797)
T cd04300 610 KVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV 666 (797)
T ss_pred EEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhH
Confidence 899999877554456789999998765 3 56899999999999999976 66543
No 239
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=72.37 E-value=9.7 Score=25.66 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=40.3
Q ss_pred HhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH-------------------HHHHHhhccccEEEcCC
Q psy15363 7 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK-------------------EEHVRRGQLADVCLDTP 67 (130)
Q Consensus 7 l~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~-------------------~~~~~~~~~~Dv~l~~~ 67 (130)
.....+.+.+++|.++..+..+.. +.+.|+ ++|.+..+-.. +++...+..+|+.+.+.
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~-L~~~g~--~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAA-LAALGA--KEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHH-HHHTTS--SEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred cCCcCCCEEEEECCHHHHHHHHHH-HHHcCC--CEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEec
Confidence 345567888888875444443333 444465 46776666431 12223445678887766
Q ss_pred CCCCchHHHHHHhcCC
Q psy15363 68 LCNGHTTSMDVLWTGT 83 (130)
Q Consensus 68 ~~~~g~~~lEAla~G~ 83 (130)
+.+.....-|.+..+.
T Consensus 84 ~~~~~~i~~~~~~~~~ 99 (135)
T PF01488_consen 84 PSGMPIITEEMLKKAS 99 (135)
T ss_dssp STTSTSSTHHHHTTTC
T ss_pred CCCCcccCHHHHHHHH
Confidence 5544444445555554
No 240
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=72.14 E-value=4.6 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=24.9
Q ss_pred HHhhccccEEEcCC---CCCCch--HHHHHHhcCCcEEecCCC
Q psy15363 54 VRRGQLADVCLDTP---LCNGHT--TSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~---~~~~g~--~~lEAla~G~PvV~~~g~ 91 (130)
.+.++.||+++--. +...|+ =+-=|.+.|+||++...+
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 56788899996433 223332 345588899999988554
No 241
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=71.79 E-value=21 Score=24.87 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----c-EEEcCCCCC-CchHHHHHHh-cCCcEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVLW-TGTPVVTL 88 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----D-v~l~~~~~~-~g~~~lEAla-~G~PvV~~ 88 (130)
+.+++.++++|+ .+.|.-.=...++..+++.+ | +.++|--|+ .+..+.||+. .++|+|=.
T Consensus 31 ~~~~~~a~~~g~---~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEV 97 (141)
T TIGR01088 31 EIIETFAAQLNV---ELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEV 97 (141)
T ss_pred HHHHHHHHHcCC---EEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEE
Confidence 456666777776 47777666666777777665 3 457777676 4788999985 68999844
No 242
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=71.51 E-value=40 Score=25.33 Aligned_cols=38 Identities=21% Similarity=-0.003 Sum_probs=27.6
Q ss_pred HHHHhhccccEEEcCC-CCCCchHHHHHHhcCCcEEecC
Q psy15363 52 EHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 52 ~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G~PvV~~~ 89 (130)
++..++..+|+.+|.. |...--.+..|+..|+|||+-+
T Consensus 53 dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigt 91 (257)
T PRK00048 53 DLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGT 91 (257)
T ss_pred CHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 4444455799999654 4555566889999999999764
No 243
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=71.00 E-value=31 Score=26.25 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=44.9
Q ss_pred HHHhh-CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCC-CchHHHHHHhcC
Q psy15363 5 FVLKA-VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTG 82 (130)
Q Consensus 5 ~il~~-~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~-~g~~~lEAla~G 82 (130)
+.+.+ .|+..+..+.+ ...++.+++++++|.. .. ..+.+++ +..+|+++...|.. ..-...+++..|
T Consensus 23 ~~L~~~~~~~el~aV~d--r~~~~a~~~a~~~g~~-~~-----~~~~eel---l~~~D~Vvi~tp~~~h~e~~~~aL~aG 91 (271)
T PRK13302 23 QALDRGLPGLTLSAVAV--RDPQRHADFIWGLRRP-PP-----VVPLDQL---ATHADIVVEAAPASVLRAIVEPVLAAG 91 (271)
T ss_pred HHHHhcCCCeEEEEEEC--CCHHHHHHHHHhcCCC-cc-----cCCHHHH---hcCCCEEEECCCcHHHHHHHHHHHHcC
Confidence 34444 47777766654 2334456666666532 11 1234444 45789998766543 345568889999
Q ss_pred CcEEecC
Q psy15363 83 TPVVTLP 89 (130)
Q Consensus 83 ~PvV~~~ 89 (130)
++|++..
T Consensus 92 k~Vi~~s 98 (271)
T PRK13302 92 KKAIVLS 98 (271)
T ss_pred CcEEEec
Confidence 9999864
No 244
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.59 E-value=5.6 Score=31.60 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=46.3
Q ss_pred HHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCch------hhhhHHHHHHhcCCCCceecCHHHHHHHHH
Q psy15363 50 KEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL------ASRVAASQLATLGCPELIARTHKEYQDIAI 123 (130)
Q Consensus 50 ~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~------~~r~~~~~l~~~g~~~~va~~~~~y~~~a~ 123 (130)
.+.+..+++.+|+.| -..|+.+=.+.-.|+|||..+|... +.|. .+-+|..-......+.-.+.++
T Consensus 302 qqsfadiLH~adaal----gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ----~rLLG~sltlv~~~aq~a~~~~ 373 (412)
T COG4370 302 QQSFADILHAADAAL----GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQ----QRLLGASLTLVRPEAQAAAQAV 373 (412)
T ss_pred HHHHHHHHHHHHHHH----HhccchHHHhhccCCceeecCCCCCCcChHHHHHH----HHHhcceeeecCCchhhHHHHH
Confidence 466777788888865 3357888899999999999987532 2222 2334666544443333334444
Q ss_pred H-hccCCC
Q psy15363 124 R-LGTDRD 130 (130)
Q Consensus 124 ~-l~~d~e 130 (130)
+ +..||+
T Consensus 374 q~ll~dp~ 381 (412)
T COG4370 374 QELLGDPQ 381 (412)
T ss_pred HHHhcChH
Confidence 4 777764
No 245
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=70.33 E-value=5.9 Score=28.09 Aligned_cols=55 Identities=16% Similarity=0.048 Sum_probs=32.6
Q ss_pred ccEE-EcCCC----CCCc--hHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHH
Q psy15363 60 ADVC-LDTPL----CNGH--TTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKE 117 (130)
Q Consensus 60 ~Dv~-l~~~~----~~~g--~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~ 117 (130)
+|++ ++-|. .+.| ..+.+|++.|+||+|.-...+...+.. -.-|+...+..+.+.
T Consensus 94 ~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l~~W~~---Fagg~a~~L~~d~~a 155 (159)
T PF10649_consen 94 ADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNLEAWRA---FAGGLATELPPDREA 155 (159)
T ss_pred CCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHH---hcCCccccCCCCHHH
Confidence 8888 45562 2334 468999999999999755433222210 112555566666554
No 246
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=70.06 E-value=24 Score=26.68 Aligned_cols=48 Identities=10% Similarity=-0.012 Sum_probs=36.3
Q ss_pred EEEecCC-CHHHHHHhhc--cccEEEcC-CCCC---CchHHHHHHhcCCcEEecC
Q psy15363 42 ILFSNVA-AKEEHVRRGQ--LADVCLDT-PLCN---GHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 42 v~f~g~~-~~~~~~~~~~--~~Dv~l~~-~~~~---~g~~~lEAla~G~PvV~~~ 89 (130)
-+..|.+ +.+++..+++ ..++++|. .||. ..+..--|-.+|+|.+-..
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 4566777 8888988885 58999994 6885 3455666788999999764
No 247
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=69.38 E-value=15 Score=29.02 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=50.7
Q ss_pred CcEEEEeecCcc-----cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcC-CCCCCchHHHHHHhcCCcE
Q psy15363 12 NSILWLLKFPAV-----GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 12 ~a~l~i~g~~~~-----~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~-~~~~~g~~~lEAla~G~Pv 85 (130)
+..=+++|+-+. --++|+++++++|.. -.++.+|..+.+.+. .+...|+|+.+ .|. +++-+.-..-+||
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk-~y~i~~~~in~~kL~-nf~eiD~fV~~aCPr---~sidd~~~f~kPv 307 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKT-VLIILLSNVSPAKLL-MFDQIDVFVQVACPR---IAIDDGYLFNKPL 307 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCc-EEEEEeCCCCHHHHh-CCCCcCEEEEecCCC---ceecchhhcCCcc
Confidence 344456664321 135788889999986 778889999887764 45679999754 353 5566777788999
Q ss_pred Eec
Q psy15363 86 VTL 88 (130)
Q Consensus 86 V~~ 88 (130)
||.
T Consensus 308 lTP 310 (332)
T TIGR00322 308 LTP 310 (332)
T ss_pred ccH
Confidence 984
No 248
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=68.62 E-value=22 Score=24.38 Aligned_cols=102 Identities=18% Similarity=0.068 Sum_probs=48.6
Q ss_pred EeecCcccHHHHHHHHHHcCCCCCCEEEecCC---CHHHHHHhhcc---cc---EEEcCCCCCCchHHH----HHHhcCC
Q psy15363 17 LLKFPAVGEANIQATAQALGLDQHRILFSNVA---AKEEHVRRGQL---AD---VCLDTPLCNGHTTSM----DVLWTGT 83 (130)
Q Consensus 17 i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~---~~~~~~~~~~~---~D---v~l~~~~~~~g~~~l----EAla~G~ 83 (130)
++...|..-..+-+++.+.|+....++=+|.. +..|++.++.. .. +|+.++.. +-..+ ++-.. +
T Consensus 6 lisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d--~~~f~~~~~~a~~~-K 82 (138)
T PF13607_consen 6 LISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGD--GRRFLEAARRAARR-K 82 (138)
T ss_dssp EEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S---HHHHHHHHHHHCCC-S
T ss_pred EEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCC--HHHHHHHHHHHhcC-C
Confidence 44433333445667778877766778778774 35777777755 33 33443332 33333 33334 9
Q ss_pred cEEecCCC-chhhh---------------hHHHHHHhcCCCCceecCHHHHHHHHH
Q psy15363 84 PVVTLPGE-TLASR---------------VAASQLATLGCPELIARTHKEYQDIAI 123 (130)
Q Consensus 84 PvV~~~g~-~~~~r---------------~~~~~l~~~g~~~~va~~~~~y~~~a~ 123 (130)
|||.++.. .-.++ +-.++++..| -+.++|.+|+++.+.
T Consensus 83 PVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aG--v~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 83 PVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAG--VVRVDDLDELLDAAK 136 (138)
T ss_dssp -EEEEE---------------------HHHHHHHHHHCT--EEEESSHHHHHHHHC
T ss_pred CEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcC--ceEECCHHHHHHHHH
Confidence 99999543 22211 1122233222 256688888877653
No 249
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=68.15 E-value=20 Score=21.88 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=37.1
Q ss_pred EEEeecCccc-----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 15 LWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 15 l~i~g~~~~~-----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
++++++.|.. ...+++.++++|++ -.+.-.. .. +.......+|+++.+..... --..-..++|+...+
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~-~~--~~~~~~~~~D~il~~~~i~~---~~~~~~~~~pv~~I~ 74 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS-IL--EVEEIADDADLILLTPQIAY---EDLKEFAGKPVPVIP 74 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE-TT--THHHHHTT-SEEEEEESSGG---HHHHHHTTSBEEEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec-cc--ccccccCCCcEEEEcCccch---hhhhhhcCCeEEEEE
Confidence 4555544532 46889999999985 3433333 22 22234467999986655433 122333446655444
No 250
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=67.87 E-value=22 Score=25.27 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=35.2
Q ss_pred HHHHHhhCCCcEEEEeecCc---cc----------HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPA---VG----------EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~---~~----------~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.++.|+++|..++.|.|+.. .. -+.+++++.+.|+.++||...|+-
T Consensus 105 ~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~~~i~~~G~G 163 (190)
T COG2885 105 LAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGVVADRISTVGYG 163 (190)
T ss_pred HHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCCCcccEEEEEcC
Confidence 57889999999999999742 11 125777888889887888888764
No 251
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=67.71 E-value=46 Score=29.31 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=51.1
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEe-------------------cCCCHHHHHHhhccccEEEcCCCCCCchH
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFS-------------------NVAAKEEHVRRGQLADVCLDTPLCNGHTT 74 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~-------------------g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~ 74 (130)
.+++.|++...-..+.+.+++.|+. +.|.+. |....+++.-.-..+|+++.-...-.+..
T Consensus 202 nIvv~GHnp~l~~~iv~~~ee~~l~-~~i~~~G~cCt~~d~~R~~~~~~~~g~~~~qe~~i~tG~~D~~vvD~qCi~~~I 280 (731)
T cd01916 202 VILVIGHNVAPGAEIMDYLEENGLE-DKVEVGGICCTAIDLTRYNEKAKVVGPLSRQLKVVRSGIADVVVVDEQCIRADI 280 (731)
T ss_pred EEEEECCCCccHHHHHHHHhccchh-hCceEEEEecccchHhhhccCCCccCcHHHHHHHHHcCCCcEEEEecccCcccH
Confidence 4567787544566777777777765 555333 33334444444466899975555556677
Q ss_pred HHHHHhcCCcEEecCCC
Q psy15363 75 SMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 75 ~lEAla~G~PvV~~~g~ 91 (130)
.-+|--.|.|+|++..+
T Consensus 281 ~eiA~kyG~g~I~tt~r 297 (731)
T cd01916 281 LEEAQKLGIPVIATNDK 297 (731)
T ss_pred HHHHHHhCCCEEEechh
Confidence 88889999999998754
No 252
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=67.57 E-value=28 Score=30.89 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=42.4
Q ss_pred CEEEecCCCHHHHHHhhccccEEEcCC--C-CCCchHHHHHHhcCCcEEec-CCCch
Q psy15363 41 RILFSNVAAKEEHVRRGQLADVCLDTP--L-CNGHTTSMDVLWTGTPVVTL-PGETL 93 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv~l~~~--~-~~~g~~~lEAla~G~PvV~~-~g~~~ 93 (130)
+|+|+..-.-.--..++..|||.+..+ + +.+||+-+=+|.-|.+.+.+ +|.+.
T Consensus 609 kVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanv 665 (798)
T PRK14985 609 KVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANV 665 (798)
T ss_pred eEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHH
Confidence 899999877555556789999998765 3 56899999999999999954 66543
No 253
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=67.02 E-value=50 Score=24.55 Aligned_cols=106 Identities=8% Similarity=0.020 Sum_probs=64.4
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC----CHHHHHHhhcc--ccEEEcCCCCCCchHHHH------H
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA----AKEEHVRRGQL--ADVCLDTPLCNGHTTSMD------V 78 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~----~~~~~~~~~~~--~Dv~l~~~~~~~g~~~lE------A 78 (130)
++.+++++.+ ...++.|.+.+++.|..-+++..-... +..++...+.. .|..+.+|+.+.-. .++ .
T Consensus 129 ~~~~vLi~rg-~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~~~~-~~~~~~~~~~ 206 (255)
T PRK05752 129 PDPRVLIMRG-EGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQGFEH-LQQLAGADWP 206 (255)
T ss_pred CCCEEEEEcc-CccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHHHHHH-HHHHhChhHH
Confidence 5556666653 356788999999999765665544322 23444444443 78888776543100 111 1
Q ss_pred HhcCCcEEecCCCchhhhhHHHHHHhcCCCCc-ee--cCHHHHHHHHHH
Q psy15363 79 LWTGTPVVTLPGETLASRVAASQLATLGCPEL-IA--RTHKEYQDIAIR 124 (130)
Q Consensus 79 la~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~-va--~~~~~y~~~a~~ 124 (130)
...++|+++.. ..++..++..|+... ++ .|.+.+++...+
T Consensus 207 ~~~~~~~~~ig------~~ta~a~~~~G~~~~~~a~~~t~~~L~~al~~ 249 (255)
T PRK05752 207 ELARLPLFVPS------PRVAEQARAAGAQTVVDCRGASAAALLAALRR 249 (255)
T ss_pred HhcCceEEEeC------HHHHHHHHHcCCCceeeCCCCChHHHHHHHHh
Confidence 24678888753 346777888899765 34 356777766654
No 254
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=66.57 E-value=19 Score=26.65 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=42.6
Q ss_pred HHHHHhhCCCcEEEEeecCcc---c---------H-HHHHHHHHHcCCCCCCEEEecCCCH--------HHHHHhhcccc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---G---------E-ANIQATAQALGLDQHRILFSNVAAK--------EEHVRRGQLAD 61 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~---------~-~~l~~~~~~~g~~~~rv~f~g~~~~--------~~~~~~~~~~D 61 (130)
.+.+++++|+.++.|.|+... . | +.+++++.+.|++++|+...|+-+. ++-...=+.++
T Consensus 134 ia~~L~~~p~~~I~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~G~G~~~Pi~~n~t~~gra~NRRVE 213 (219)
T PRK10510 134 VAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRRVE 213 (219)
T ss_pred HHHHHHhCCCceEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEcCCCcCCCCcChhHHHhcCcEE
Confidence 467888999999999996321 1 1 2466777888999999999886321 11223345677
Q ss_pred EEEcC
Q psy15363 62 VCLDT 66 (130)
Q Consensus 62 v~l~~ 66 (130)
|.+.|
T Consensus 214 I~i~p 218 (219)
T PRK10510 214 ITLSP 218 (219)
T ss_pred EEEec
Confidence 77654
No 255
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=65.99 E-value=66 Score=25.56 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHhcCCcEEecCCCc--hh-hhhHHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLWTGTPVVTLPGET--LA-SRVAAS 100 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla~G~PvV~~~g~~--~~-~r~~~~ 100 (130)
.+.|++..++.|+. +++-..+.++...+...+|++ +-++-...-.-+-++-..|+||+..+|-. +. =...+.
T Consensus 146 L~~L~~~~~~~Gl~----v~tev~d~~~~~~l~~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e 221 (335)
T PRK08673 146 LKLLAEAREETGLP----IVTEVMDPRDVELVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAE 221 (335)
T ss_pred HHHHHHHHHHcCCc----EEEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 34677778888986 444444544444444558988 43443333333455556799999998854 22 122455
Q ss_pred HHHhcCCCC
Q psy15363 101 QLATLGCPE 109 (130)
Q Consensus 101 ~l~~~g~~~ 109 (130)
.+...|.+.
T Consensus 222 ~i~~~GN~~ 230 (335)
T PRK08673 222 YILAEGNPN 230 (335)
T ss_pred HHHHcCCCe
Confidence 566667765
No 256
>PRK14986 glycogen phosphorylase; Provisional
Probab=65.48 E-value=38 Score=30.17 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=42.4
Q ss_pred CEEEecCCCHHHHHHhhccccEEEcCC--C-CCCchHHHHHHhcCCcEEec-CCCch
Q psy15363 41 RILFSNVAAKEEHVRRGQLADVCLDTP--L-CNGHTTSMDVLWTGTPVVTL-PGETL 93 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv~l~~~--~-~~~g~~~lEAla~G~PvV~~-~g~~~ 93 (130)
+|+|+..-.-.--..++..|||.+..+ + +.+||+-+=+|.-|.+.+.+ +|.+.
T Consensus 623 kVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nv 679 (815)
T PRK14986 623 KVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANV 679 (815)
T ss_pred eEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchh
Confidence 899999877555556789999998766 3 46899999999999999954 67543
No 257
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=65.43 E-value=9.4 Score=27.22 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=33.6
Q ss_pred HHHHHhhCCCcEEEEeecCcc---c---------H-HHHHHHHHHcCCCCCCEEEecCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---G---------E-ANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~---------~-~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.+++++++|+.++.|.|+... . | +.+++++...|++++|+...|+-
T Consensus 91 ~a~~L~~~p~~~v~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G 149 (173)
T PRK10802 91 HANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYG 149 (173)
T ss_pred HHHHHHhCCCceEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEec
Confidence 467888999999999996321 1 1 24667777889998898887754
No 258
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=65.20 E-value=66 Score=25.30 Aligned_cols=91 Identities=14% Similarity=0.051 Sum_probs=56.2
Q ss_pred EEEEeecCcc---cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh--cCCcEEec
Q psy15363 14 ILWLLKFPAV---GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVTL 88 (130)
Q Consensus 14 ~l~i~g~~~~---~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla--~G~PvV~~ 88 (130)
.+-++|.... +...+++++++.|+. -+..|.+..+.+++.. +..|.+.+-.+++ .|..+.|.|. .|+|.+..
T Consensus 154 ~vNlig~~~~~~~d~~el~~ll~~~G~~-v~~~~~~~~s~~~i~~-~~~A~~nlv~~~~-~g~~~a~~l~~~~g~p~~~~ 230 (399)
T cd00316 154 SVNLIGGYNLGGGDLRELKRLLEEMGIR-VNALFDGGTTVEELRE-LGNAKLNLVLCRE-SGLYLARYLEEKYGIPYILI 230 (399)
T ss_pred cEEEECCCCCchhhHHHHHHHHHHcCCc-EEEEcCCCCCHHHHHh-hccCcEEEEecHh-HHHHHHHHHHHHhCCCeEEe
Confidence 4566674322 557899999999996 5555655567788865 5677777655552 3444555553 89998876
Q ss_pred C--CCchhhhhHHHHHHhcCC
Q psy15363 89 P--GETLASRVAASQLATLGC 107 (130)
Q Consensus 89 ~--g~~~~~r~~~~~l~~~g~ 107 (130)
. |-.-..++-..+.+.+|+
T Consensus 231 ~p~G~~~t~~~l~~i~~~~g~ 251 (399)
T cd00316 231 NPIGLEATDAFLRKLAELFGI 251 (399)
T ss_pred CCcCHHHHHHHHHHHHHHhCC
Confidence 5 111223444445555665
No 259
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=64.98 E-value=14 Score=21.58 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=40.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEe
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~ 87 (130)
+..+.+-+.+...++.++++++++|-. + .... -..++.++-..+.....-...|...|+|+|.
T Consensus 8 g~~f~i~~~~~~~~~~l~~~i~~~GG~---v--~~~~--------~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~ 70 (78)
T PF00533_consen 8 GCTFCISGFDSDEREELEQLIKKHGGT---V--SNSF--------SKKTTHVIVGNPNKRTKKYKAAIANGIPIVS 70 (78)
T ss_dssp TEEEEESSTSSSHHHHHHHHHHHTTEE---E--ESSS--------STTSSEEEESSSHCCCHHHHHHHHTTSEEEE
T ss_pred CEEEEEccCCCCCHHHHHHHHHHcCCE---E--Eeec--------ccCcEEEEeCCCCCccHHHHHHHHCCCeEec
Confidence 456666343335688999999999943 3 1111 2355666533333456679999999999996
No 260
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=64.45 E-value=65 Score=24.98 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=60.7
Q ss_pred EEEeecCcccHHHHHHHHHHcCCCCCCEEEecC-----CCHHHHHHhhcc---cc---EEEcCCCCCCchHHHHHHh--c
Q psy15363 15 LWLLKFPAVGEANIQATAQALGLDQHRILFSNV-----AAKEEHVRRGQL---AD---VCLDTPLCNGHTTSMDVLW--T 81 (130)
Q Consensus 15 l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~-----~~~~~~~~~~~~---~D---v~l~~~~~~~g~~~lEAla--~ 81 (130)
+-+++.+|..-..+-.++++.|+.-..++=+|. ++..|++.++.. .. +|+.+...... ...+-+. .
T Consensus 148 valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~-~a~~~~~~~~ 226 (291)
T PRK05678 148 VGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEE-EAAEYIKANV 226 (291)
T ss_pred EEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHH-HHHHHHHHcC
Confidence 445554343344667778888876567777775 356788877744 22 33433222111 2223333 3
Q ss_pred CCcEEecC-CCch-hh---hhHHHH--------------HHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 82 GTPVVTLP-GETL-AS---RVAASQ--------------LATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 82 G~PvV~~~-g~~~-~~---r~~~~~--------------l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
++|||.++ |.+- .+ .++.++ ++..|+ ...+|.+|+.+.+..++.
T Consensus 227 ~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gv--i~v~~~~el~~~~~~~~~ 289 (291)
T PRK05678 227 TKPVVGYIAGVTAPPGKRMGHAGAIISGGKGTAEEKKEALEAAGV--KVARTPSEIGELLKEVLK 289 (291)
T ss_pred CCCEEEEEecCCCCCCCcccchhhhccCCCCCHHHHHHHHHHCCC--eECCCHHHHHHHHHHHHc
Confidence 89999984 3322 11 122233 222222 456899999999888764
No 261
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=64.08 E-value=33 Score=26.21 Aligned_cols=76 Identities=18% Similarity=0.117 Sum_probs=50.1
Q ss_pred cEEEEeecC---c----ccHHHHHHHHHHcCCCCCCEEEecCCC---HHHHHHhhccccEEEcCCCCC--CchHHHH--H
Q psy15363 13 SILWLLKFP---A----VGEANIQATAQALGLDQHRILFSNVAA---KEEHVRRGQLADVCLDTPLCN--GHTTSMD--V 78 (130)
Q Consensus 13 a~l~i~g~~---~----~~~~~l~~~~~~~g~~~~rv~f~g~~~---~~~~~~~~~~~Dv~l~~~~~~--~g~~~lE--A 78 (130)
+-++.+|+. | ..-+.|.+.+.++|++..++...|--+ .+.+......+|+.+.|-..+ .-=.+.| |
T Consensus 4 a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~DDiT~e~vA 83 (255)
T COG1058 4 AEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHDDLTAEAVA 83 (255)
T ss_pred EEEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCccHhHHHHHH
Confidence 456667742 1 235688899999999878888888765 245666667799998553221 1112444 5
Q ss_pred HhcCCcEEec
Q psy15363 79 LWTGTPVVTL 88 (130)
Q Consensus 79 la~G~PvV~~ 88 (130)
-++|+|.+-.
T Consensus 84 ka~g~~lv~~ 93 (255)
T COG1058 84 KALGRPLVLD 93 (255)
T ss_pred HHhCCCcccC
Confidence 5789999865
No 262
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=63.90 E-value=14 Score=30.85 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=49.8
Q ss_pred CcEEEEeecCcc-----cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcC-CCCCCchHHHHHHhcCCcE
Q psy15363 12 NSILWLLKFPAV-----GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 12 ~a~l~i~g~~~~-----~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~-~~~~~g~~~lEAla~G~Pv 85 (130)
+..=+++|.-+. --++|+++++++|.. ..++..|......+ +-+..+|+|+.. .|. +++.+.-..-+||
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK-~yl~~vgkinpaKL-aNF~eID~fV~vaCPr---~sidd~~~F~KPV 356 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTAGKK-HYLFVVGKPNPAKL-ANFEDIDIFVLLGCSQ---SGIIDSNEFYRPI 356 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCc-EEEEEeCCCCHHHH-hCCCCCCEEEEccCCC---cccccHhhCCCce
Confidence 344456775321 135788999999986 77888999988777 445679999754 354 3344666677888
Q ss_pred Eec
Q psy15363 86 VTL 88 (130)
Q Consensus 86 V~~ 88 (130)
||.
T Consensus 357 lTP 359 (496)
T TIGR00272 357 VTP 359 (496)
T ss_pred ecH
Confidence 875
No 263
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=63.90 E-value=23 Score=19.57 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=38.4
Q ss_pred cEEEEeecC-cccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEe
Q psy15363 13 SILWLLKFP-AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 13 a~l~i~g~~-~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~ 87 (130)
..+.+.|.. +..++.++++++++|-. +. ...+ ..++.++.+...... ....|...|+|+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~---v~--~~~~--------~~~thvI~~~~~~~~-~~~~~~~~~~~iV~ 63 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK---VT--SSVS--------KKTTHVIVGSDAGPK-KLLKAIKLGIPIVT 63 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE---Ee--cccc--------CCceEEEECCCCCch-HHHHHHHcCCeEec
Confidence 356677753 46788999999999842 22 2222 345555544332221 27889999999996
No 264
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=63.70 E-value=58 Score=24.90 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=71.4
Q ss_pred CCcEEEEeecCcccHHHHHHHHHH-cCCCCCCEEEecCC----CHHHHHHhhccccEEEcCC-CCCCchHHHHHHhcC-C
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVA----AKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTG-T 83 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~-~g~~~~rv~f~g~~----~~~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G-~ 83 (130)
++-...++|.+|.++..|-+.+.. +......|.+-|.- +..++.+ -=-|+.-. +..++.++.|...+| .
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk----~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAK----KLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhh----hEEEeccCCCCCCCcEEeehHhhcCC
Confidence 356778899888888877776554 44443568887753 2333322 22344433 456789999999999 5
Q ss_pred cEEecCCCchhh-h-hHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 84 PVVTLPGETLAS-R-VAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 84 PvV~~~g~~~~~-r-~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
|-...-+..-.. + .....+..+|+.++... .+-.-+-+|..|+.+++
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 645444311111 1 34445777888765543 45677788888887764
No 265
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=63.54 E-value=30 Score=24.20 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----c-EEEcCCCCC-CchHHHHHHh-cCCcEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVLW-TGTPVVTL 88 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----D-v~l~~~~~~-~g~~~lEAla-~G~PvV~~ 88 (130)
+.+++.++++|+ .+.|.-.=...++..+++.+ | +.++|--++ .+..+.||+. .++|+|=.
T Consensus 33 ~~~~~~a~~~g~---~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEV 99 (146)
T PRK13015 33 ALCRAAAEALGL---EVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEV 99 (146)
T ss_pred HHHHHHHHHcCC---EEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEE
Confidence 456666677776 47777665566777666653 4 457777675 4788899975 68999844
No 266
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=63.24 E-value=56 Score=24.47 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=77.6
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCC-CCEEEecCCCH--HHHHHhh-ccccEEEcCCCCCCchHHHHHHhcCCcEE
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQ-HRILFSNVAAK--EEHVRRG-QLADVCLDTPLCNGHTTSMDVLWTGTPVV 86 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~-~rv~f~g~~~~--~~~~~~~-~~~Dv~l~~~~~~~g~~~lEAla~G~PvV 86 (130)
++-++.++|.+|.++..+.+.+.-+-.+. ..|.+-|.... .....+- +...||-+|-..-++.++.|=++.|..=.
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~ 108 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL 108 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc
Confidence 56788999988889999998888554442 35655554322 2222222 23566666655556778888899999888
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCcee-------cCHHHHHHHHHHhccCCC
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIA-------RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va-------~~~~~y~~~a~~l~~d~e 130 (130)
..+.+....|+ ...+...|+.++-. .....-+++|..|+.+|+
T Consensus 109 g~~~~e~~~rv-~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ 158 (235)
T COG1122 109 GLPREEIEERV-AEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE 158 (235)
T ss_pred CCCHHHHHHHH-HHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence 77665555554 45666778875533 234566778887777764
No 267
>KOG2648|consensus
Probab=63.17 E-value=25 Score=29.10 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEc-CCCCC---------C-chHHHHHHhcCCcEEecCCCch
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCN---------G-HTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~-~~~~~---------~-g~~~lEAla~G~PvV~~~g~~~ 93 (130)
-++|++++++.|.. ..++.+|......+ +.+..+|+|+- ..|.. . =.|..||-.+.-|. +..++..
T Consensus 285 l~~L~~~~~~~Gkk-~y~l~~g~inPaKL-AnF~eIDvfV~iaCp~lsid~s~~F~kPiltPfEa~~Al~~~-~W~~~~~ 361 (453)
T KOG2648|consen 285 LEHLRKLLKAAGKK-SYVLALGEINPAKL-ANFPEIDVFVQIACPRLSIDWSKEFYKPLLTPFEAEVALNPI-AWTGDYL 361 (453)
T ss_pred HHHHHHHHHHcCCc-eEEEEecCCCHHHh-cCCccccEEEEEeCcccchhhhhhhccccccHHHHHHhcCcc-ccCCccc
Confidence 35788899999986 78888999886655 66788999952 33331 1 14567777777776 6655554
Q ss_pred hhh
Q psy15363 94 ASR 96 (130)
Q Consensus 94 ~~r 96 (130)
..+
T Consensus 362 ~~~ 364 (453)
T KOG2648|consen 362 APF 364 (453)
T ss_pred cch
Confidence 444
No 268
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=63.06 E-value=9.6 Score=26.25 Aligned_cols=57 Identities=11% Similarity=0.190 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCC--HHHHHHhhccccEEEcCCCCCCch---------------HHHHHHhcCCcEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAA--KEEHVRRGQLADVCLDTPLCNGHT---------------TSMDVLWTGTPVVTL 88 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~--~~~~~~~~~~~Dv~l~~~~~~~g~---------------~~lEAla~G~PvV~~ 88 (130)
+..++.++++|+. +.-+...+ .++..+.+..+|+.. .+||. .+-|+...|.|++..
T Consensus 3 ~~~~~~f~~~g~~---v~~l~~~~~~~~~~~~~i~~ad~I~----~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~ 75 (154)
T PF03575_consen 3 EKFRKAFRKLGFE---VDQLDLSDRNDADILEAIREADAIF----LGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGT 75 (154)
T ss_dssp HHHHHHHHHCT-E---EEECCCTSCGHHHHHHHHHHSSEEE----E--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCE---EEEEeccCCChHHHHHHHHhCCEEE----ECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEE
Confidence 4567888999985 54444443 567888889999986 33332 356778899999866
Q ss_pred C
Q psy15363 89 P 89 (130)
Q Consensus 89 ~ 89 (130)
.
T Consensus 76 S 76 (154)
T PF03575_consen 76 S 76 (154)
T ss_dssp T
T ss_pred C
Confidence 3
No 269
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=62.97 E-value=59 Score=24.00 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=36.4
Q ss_pred CCEEEecCCCH--HHHHHhhccc----cEEEcCCCCCCchH--H-HHHHhcCCcEEecCCCchhhhhHHHHHHhc
Q psy15363 40 HRILFSNVAAK--EEHVRRGQLA----DVCLDTPLCNGHTT--S-MDVLWTGTPVVTLPGETLASRVAASQLATL 105 (130)
Q Consensus 40 ~rv~f~g~~~~--~~~~~~~~~~----Dv~l~~~~~~~g~~--~-lEAla~G~PvV~~~g~~~~~r~~~~~l~~~ 105 (130)
+.|+..|..|- -++..++..- .+.+ -.|-++..+ . -+-+.+|+|-|+..|..=-+-+.+++++++
T Consensus 122 ~~IvvIGNAPTAL~~l~eli~~g~~~PalVI-g~PVGFV~A~ESKe~L~~~~iP~It~~GrkGGS~vAaAivNAL 195 (203)
T PRK05954 122 EAIYVIGNAPTALLALCQQIRAGRVKPSLVI-GVPVGFVSVVEAKQALAQLDVPQIRVEGRKGGSPVAAAIVNAL 195 (203)
T ss_pred CCEEEEeCCHHHHHHHHHHHHcCCCCCCEEE-EECCcccCHHHHHHHHHhCCCCEEEEecCCCcHHHHHHHHHHH
Confidence 45777887773 3333333221 2222 224333221 2 223567999999988766677777777653
No 270
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=62.60 E-value=28 Score=24.95 Aligned_cols=117 Identities=16% Similarity=0.080 Sum_probs=61.3
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEE-EcCCC-CCCchHHHHHHhcCCcEEe
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPL-CNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~-~~~g~~~lEAla~G~PvV~ 87 (130)
|+-.+.++|.+|.++..|-+.+..+ .....+|.+-|.-.... ...++. .+. +...+ .-.+.++.|-+......-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 107 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE-PAEARR-RLGFVSDSTGLYDRLTARENLEYFAGLYG 107 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC-HHHHHh-hEEEecCCcccCcCCCHHHHHHHHHHHcC
Confidence 5677889998888999888877633 22235788776421111 111221 232 32222 1223466666654322100
Q ss_pred cCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 88 LPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 88 ~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
.. ..........+++.+|+.++... ....-+.+|..|+.+|+
T Consensus 108 ~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 108 LK-GDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred CC-HHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 00 00111223567788888765432 34566788888887774
No 271
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=62.54 E-value=78 Score=25.22 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=64.3
Q ss_pred CcEEEEeecCcccHHH-HHHHHHHcCCCCC-CEEEecCCCHHHHHHhhcc------ccEEEcCCC--CCCchHHHHHHh-
Q psy15363 12 NSILWLLKFPAVGEAN-IQATAQALGLDQH-RILFSNVAAKEEHVRRGQL------ADVCLDTPL--CNGHTTSMDVLW- 80 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~-l~~~~~~~g~~~~-rv~f~g~~~~~~~~~~~~~------~Dv~l~~~~--~~~g~~~lEAla- 80 (130)
+-++.+++. +.+-.. ....+.++|..+. -+.+.|..+.+.+...+.. .|..+-... ......+.+++.
T Consensus 256 ~~~i~ii~n-g~G~~~~~~D~l~~~g~~~~NPvDl~g~~~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~ 334 (388)
T PRK00696 256 DGNIGCMVN-GAGLAMATMDIIKLYGGEPANFLDVGGGATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIA 334 (388)
T ss_pred CCcEEEEEC-CchHHHHHHHHHHHcCCCcCCeEEecCCCCHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 345556653 233222 3356777877654 4888666555555444432 455542111 111233444443
Q ss_pred ------cCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 81 ------TGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 81 ------~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
+++|+++.-.. ........+|+..|++-.+.+++++=++.+.++++
T Consensus 335 ~~~~~~~~kPvv~~~~g-~~~~~~~~~L~~~Gi~ip~f~~pe~A~~al~~~~~ 386 (388)
T PRK00696 335 AVKEVGVTVPLVVRLEG-TNVELGKKILAESGLNIIAADTLDDAAQKAVEAAK 386 (388)
T ss_pred HHHhcCCCCcEEEEeCC-CCHHHHHHHHHHCCCCceecCCHHHHHHHHHHHhc
Confidence 68999776433 23334566788888766677888887777777654
No 272
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=62.54 E-value=34 Score=28.39 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEEEcCCCCCCchHHHHHH-hcCCcEEecC
Q psy15363 28 IQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVCLDTPLCNGHTTSMDVL-WTGTPVVTLP 89 (130)
Q Consensus 28 l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~l~~~~~~~g~~~lEAl-a~G~PvV~~~ 89 (130)
+++.+++.|++++-|.++...+.+.-..+++. .|..+ ++|+..+..+. ..++|++..-
T Consensus 154 l~~~l~eaGlP~gvv~~v~g~~~e~~~~L~~~~~vd~V~----fTGs~~v~~~a~~~~~pv~~e~ 214 (488)
T TIGR02518 154 MRKAAEEAGAPEGAIGCITVPTIEGTNELMKNKDTSLIL----ATGGEAMVKAAYSSGTPAIGVG 214 (488)
T ss_pred HHHHHHHcCcCcccEEEEcCCCHHHHHHHHhCCCcCEEE----EeCCHHHHHHHHHcCCCEEEEc
Confidence 56777899998677777754444444445544 44544 55655555544 4789998654
No 273
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=62.52 E-value=25 Score=21.96 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=33.9
Q ss_pred hHHHHHhhCCCcEEEEeecCcc---c----------HHHHHHHHHHcCCCCCCEEEecCCC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV---G----------EANIQATAQALGLDQHRILFSNVAA 49 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~---~----------~~~l~~~~~~~g~~~~rv~f~g~~~ 49 (130)
.|...++..|+.++.|.|...+ . -..+++++.+.|+..+++...|.-.
T Consensus 23 ~~~~~l~~~~~~~v~v~g~a~~~g~~~~n~~Ls~~RA~~v~~~L~~~g~~~~~i~~~~~G~ 83 (106)
T cd07185 23 KLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83 (106)
T ss_pred HHHHHHHHCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEeCC
Confidence 3677889999989999985321 1 1246667778898878888876653
No 274
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=62.46 E-value=20 Score=28.63 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=23.1
Q ss_pred HHHHhhCCCcEEEEeecCccc-HHHHHHHHHHc
Q psy15363 4 IFVLKAVPNSILWLLKFPAVG-EANIQATAQAL 35 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~-~~~l~~~~~~~ 35 (130)
..|++++|+.+++++|++|.. .+...+.++++
T Consensus 269 ~nil~~~p~~kfvLVGDsGE~DpeIYae~v~~f 301 (373)
T COG4850 269 RNILRRYPDRKFVLVGDSGEHDPEIYAEMVRCF 301 (373)
T ss_pred HHHHHhCCCceEEEecCCCCcCHHHHHHHHHhC
Confidence 348899999999999987653 34445566665
No 275
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=62.31 E-value=56 Score=25.99 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=47.2
Q ss_pred cEEEEeecCc--ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchH---HHHHHhcCCcEEe
Q psy15363 13 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTT---SMDVLWTGTPVVT 87 (130)
Q Consensus 13 a~l~i~g~~~--~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~---~lEAla~G~PvV~ 87 (130)
-.+-|+|.-. .+...|++++++.|+. -+.+|.+..+.+++.. +..|.+-+-.++.. +.. .|+.- .|+|.+.
T Consensus 161 ~~VNiig~~~~~~d~~el~~lL~~~Gi~-~~~~~~~~~~~~~i~~-~~~A~~niv~~~~~-~~~~a~~L~~r-~GiP~~~ 236 (406)
T cd01967 161 YDVNIIGEYNIGGDAWVIKPLLEELGIR-VNATFTGDGTVDELRR-AHRAKLNLVHCSRS-MNYLAREMEER-YGIPYME 236 (406)
T ss_pred CeEEEEeccccchhHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhh-CccCCEEEEEChHH-HHHHHHHHHHh-hCCCEEE
Confidence 4566777421 2457899999999997 5677777788888876 66677665434321 222 33333 7999986
Q ss_pred c
Q psy15363 88 L 88 (130)
Q Consensus 88 ~ 88 (130)
.
T Consensus 237 ~ 237 (406)
T cd01967 237 V 237 (406)
T ss_pred e
Confidence 3
No 276
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=62.29 E-value=38 Score=28.61 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=45.2
Q ss_pred HHHHhhCCCcEEEEeecCcc-cHHHHHHHHHHcCCCCC-CEEEecCCCHHHHHHhhccccEEEcCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQH-RILFSNVAAKEEHVRRGQLADVCLDTP 67 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~-rv~f~g~~~~~~~~~~~~~~Dv~l~~~ 67 (130)
+..+...|. +.+|+....| -.++.+...+-.|++++ =+.|+|.++.++-...|....||+.|.
T Consensus 51 ~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTP 115 (542)
T COG1111 51 ANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATP 115 (542)
T ss_pred HHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhCCEEEecc
Confidence 456677888 5555542234 35566666677899654 478999999988888999999998765
No 277
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=62.14 E-value=39 Score=28.24 Aligned_cols=72 Identities=18% Similarity=0.028 Sum_probs=49.9
Q ss_pred EEEEeecCc------ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh--cCCcE
Q psy15363 14 ILWLLKFPA------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPV 85 (130)
Q Consensus 14 ~l~i~g~~~------~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla--~G~Pv 85 (130)
.+-|+|... .+-..+++++++.|+. -+++|.+..+.+++.+ +..|++-+-.+++ .|..+.+.|- +|+|.
T Consensus 160 ~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~-vn~v~p~g~s~~di~~-l~~A~~nivl~~~-~g~~~A~~Lee~fGiP~ 236 (519)
T PRK02910 160 SVNLLGPTALGFHHRDDLTELRRLLATLGID-VNVVAPLGASPADLKR-LPAAWFNVVLYRE-IGESAARYLEREFGQPY 236 (519)
T ss_pred eEEEEecCccCCCChhHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHh-cccCcEEEEeCHH-HHHHHHHHHHHHhCCcc
Confidence 466777421 2446799999999997 6777877777788755 6677877765664 3455556544 79998
Q ss_pred Eec
Q psy15363 86 VTL 88 (130)
Q Consensus 86 V~~ 88 (130)
+..
T Consensus 237 i~~ 239 (519)
T PRK02910 237 VKT 239 (519)
T ss_pred ccc
Confidence 863
No 278
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.01 E-value=81 Score=25.26 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH-hcCCcEEecCCCch-hh--hhHHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL-WTGTPVVTLPGETL-AS--RVAAS 100 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl-a~G~PvV~~~g~~~-~~--r~~~~ 100 (130)
.+.|++..++.|+. +++-..+.++...+...+|++-=++....-..+++++ ..|+||+..+|-.. .. ...+.
T Consensus 154 l~~L~~~~~e~Gl~----~~tev~d~~~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e 229 (352)
T PRK13396 154 LELLAAAREATGLG----IITEVMDAADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAE 229 (352)
T ss_pred HHHHHHHHHHcCCc----EEEeeCCHHHHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHH
Confidence 34667777888886 4444455444433344589993333332335667666 57999999988652 11 22445
Q ss_pred HHHhcCCCC
Q psy15363 101 QLATLGCPE 109 (130)
Q Consensus 101 ~l~~~g~~~ 109 (130)
.+...|.++
T Consensus 230 ~i~~~Gn~~ 238 (352)
T PRK13396 230 YILAAGNPN 238 (352)
T ss_pred HHHHcCCCe
Confidence 555557665
No 279
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=61.95 E-value=63 Score=23.95 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=65.9
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc-ccEE-EcC-CCCCCchHHHHHHh----cCCcEE
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVC-LDT-PLCNGHTTSMDVLW----TGTPVV 86 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~-~Dv~-l~~-~~~~~g~~~lEAla----~G~PvV 86 (130)
+++++-+...-.+.+...+++.|.+ ...+. .. ++....... .|+. ||- .|...|..++.-+- ...|||
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~--v~~~~-~~--~~a~~~~~~~~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi 76 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYE--VDVAA-DG--EEALEAAREQPDLVLLDLMLPDLDGLELCRRLRAKKGSGPPII 76 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE--EEEEC-CH--HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEE
Confidence 4667765333456777788888863 22222 11 333333322 7887 664 47777888777777 778999
Q ss_pred ecCCCc-hhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccC
Q psy15363 87 TLPGET-LASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTD 128 (130)
Q Consensus 87 ~~~g~~-~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d 128 (130)
.+.... ...++. .-..|.++++.. ++.++.++...+++.
T Consensus 77 ~Lta~~~~~d~v~---gl~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 77 VLTARDDEEDRVL---GLEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred EEECCCcHHHHHH---HHhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 886542 233332 123477887763 889999998887663
No 280
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=61.76 E-value=51 Score=26.08 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc-ccEE-EcCCCCCCchHHHHHHh-cCCcEEecCCCchhhh--hHHH
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVC-LDTPLCNGHTTSMDVLW-TGTPVVTLPGETLASR--VAAS 100 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~-~Dv~-l~~~~~~~g~~~lEAla-~G~PvV~~~g~~~~~r--~~~~ 100 (130)
..|.+.++++|+. .|.-..+.+.+--+... +|++ +-++-. .-..++++++ .|+|||...|-.--.- ...+
T Consensus 79 ~~L~~~~~~~Gi~----~~stpfd~~svd~l~~~~v~~~KIaS~~~-~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~ 153 (329)
T TIGR03569 79 RELKEYCESKGIE----FLSTPFDLESADFLEDLGVPRFKIPSGEI-TNAPLLKKIARFGKPVILSTGMATLEEIEAAVG 153 (329)
T ss_pred HHHHHHHHHhCCc----EEEEeCCHHHHHHHHhcCCCEEEECcccc-cCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHH
Confidence 4677888899986 45555554433322334 7777 544332 3355666554 6999999887532221 2445
Q ss_pred HHHhcCCC
Q psy15363 101 QLATLGCP 108 (130)
Q Consensus 101 ~l~~~g~~ 108 (130)
.+...|.+
T Consensus 154 ~i~~~G~~ 161 (329)
T TIGR03569 154 VLRDAGTP 161 (329)
T ss_pred HHHHcCCC
Confidence 56666765
No 281
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=61.50 E-value=31 Score=23.95 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----c-EEEcCCCCC-CchHHHHHHh-cCCcEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVLW-TGTPVVTL 88 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----D-v~l~~~~~~-~g~~~lEAla-~G~PvV~~ 88 (130)
+.+++.++++|+ .+.|.-.=...++..+++.+ | +.++|--|+ .+..+.+|+. .++|+|=.
T Consensus 31 ~~l~~~a~~~g~---~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEV 97 (140)
T cd00466 31 ALLRELAAELGV---EVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEV 97 (140)
T ss_pred HHHHHHHHHcCC---EEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEE
Confidence 456666777776 47776665566777777664 4 447776675 4778899975 57999844
No 282
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=61.29 E-value=42 Score=25.03 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=45.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEEecCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~~g 90 (130)
|+.|+.+.+ ...++.+++++++|+. -..+.+++.. ...|+.+...| ...--....++..|++|++..-
T Consensus 1 ~~eLvaV~D--~~~e~a~~~a~~~g~~-------~~~d~~eLl~--~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~ 69 (229)
T TIGR03855 1 NFEIAAVYD--RNPKDAKELAERCGAK-------IVSDFDEFLP--EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSV 69 (229)
T ss_pred CeEEEEEEC--CCHHHHHHHHHHhCCc-------eECCHHHHhc--CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECC
Confidence 356666664 4556778888888752 1234566654 46999976544 4445668899999999999743
No 283
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=61.16 E-value=46 Score=25.41 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=45.3
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC-CCH-H---HHHHhhc----------------------------
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-AAK-E---EHVRRGQ---------------------------- 58 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~-~~~-~---~~~~~~~---------------------------- 58 (130)
+..++++|.....++.+++.+++-|...=.=+|+|- ++. . .-...|.
T Consensus 64 ~g~ILfVgTK~~a~~~V~~~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l~l~re~~kL 143 (252)
T COG0052 64 GGKILFVGTKKQAQEPVKEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEALMLTRELEKL 143 (252)
T ss_pred CCEEEEEechHHHHHHHHHHHHHhCCceecCcccCccccCchhHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHH
Confidence 466678887544567788888888754222334433 332 1 1011222
Q ss_pred ------------cccEE--EcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 59 ------------LADVC--LDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 59 ------------~~Dv~--l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.=|+. +||-.+ -.++.||--.|+|||++
T Consensus 144 ~k~lgGIk~m~~~Pd~l~ViDp~~e--~iAv~EA~klgIPVvAl 185 (252)
T COG0052 144 EKSLGGIKDMKGLPDVLFVIDPRKE--KIAVKEANKLGIPVVAL 185 (252)
T ss_pred HHhhcchhhccCCCCEEEEeCCcHh--HHHHHHHHHcCCCEEEE
Confidence 14554 455543 48899999999999987
No 284
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=61.07 E-value=13 Score=25.82 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCCCCEEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSN 46 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g 46 (130)
+..++.+.+.|++++||..+|
T Consensus 146 e~~~~~l~~~Gi~~~~I~vtG 166 (169)
T PF06925_consen 146 EEVKEELIERGIPPERIHVTG 166 (169)
T ss_pred HHHHHHHHHcCCChhHEEEeC
Confidence 567787888999999999988
No 285
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=61.04 E-value=14 Score=27.84 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=34.4
Q ss_pred HHHHHhhCCCcEEEEeecCc---cc---------H-HHHHHHHHHcCCCCCCEEEecCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPA---VG---------E-ANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~---~~---------~-~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.+.+++..|+.++.|.|+.. +. | ..+++++.+.|++++|+...|+-
T Consensus 157 iA~~Lk~~p~~~V~I~GHTD~~Gs~~~N~~LS~~RA~aV~~yLv~~GI~~~RI~~~G~G 215 (239)
T TIGR03789 157 VATLMKQSPELKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARLTTQAFG 215 (239)
T ss_pred HHHHHHhCCCCeEEEEEeCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 56788899999999999632 11 1 25667788889998999987764
No 286
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=60.88 E-value=32 Score=24.19 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=44.6
Q ss_pred EEEEeec--Cc----ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEe
Q psy15363 14 ILWLLKF--PA----VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 14 ~l~i~g~--~~----~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~ 87 (130)
+++++.. ++ ..++.+.+.+++.|+. ++..+..+..|..++++.+|+++. +.|++.+-+==|--|.=||.
T Consensus 104 ~i~~i~R~~~~~R~i~Ne~el~~~l~~~~~~---~v~~~~~s~~eqv~~~~~a~viig--~hGs~l~n~~F~~~~s~vie 178 (206)
T PF04577_consen 104 RILYISRRKSGSRRILNEDELLEILKKYGFE---VVDPEDLSFEEQVKLFASAKVIIG--PHGSALTNLLFMPPGSTVIE 178 (206)
T ss_pred eEEEEecCCCCCCcCcCHHHHHHHHhhCCeE---EEeCCCCCHHHHHHHhcCCCEEEe--cCchHhheeeecCCCCEEEE
Confidence 6767665 11 1356777778877762 555667888888889999999993 34444443333344555666
Q ss_pred c
Q psy15363 88 L 88 (130)
Q Consensus 88 ~ 88 (130)
.
T Consensus 179 i 179 (206)
T PF04577_consen 179 I 179 (206)
T ss_pred E
Confidence 5
No 287
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=60.66 E-value=15 Score=24.71 Aligned_cols=31 Identities=10% Similarity=0.273 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCCCCCEEEe--cCCCHHHHHHh
Q psy15363 26 ANIQATAQALGLDQHRILFS--NVAAKEEHVRR 56 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~--g~~~~~~~~~~ 56 (130)
+.+++.+++.|++++||.|. .....+.+.+.
T Consensus 80 ~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~ 112 (124)
T PF02662_consen 80 ERLKKLLEELGIEPERVRLYWISAPEGKRFAEI 112 (124)
T ss_pred HHHHHHHHHcCCChhHeEEEEeCcccHHHHHHH
Confidence 36778899999999999994 33334445443
No 288
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=60.62 E-value=10 Score=29.98 Aligned_cols=43 Identities=28% Similarity=0.293 Sum_probs=33.6
Q ss_pred HHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec--CCCchh
Q psy15363 52 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL--PGETLA 94 (130)
Q Consensus 52 ~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~--~g~~~~ 94 (130)
.....|..+-|.|.-...+|.++.+-.+..|+|+|+. +|+.++
T Consensus 268 ~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fglP~VaFesPGd~~a 312 (425)
T COG5153 268 AVRRIYPDARIWLTGHSLGGAIASLLGIRFGLPVVAFESPGDAYA 312 (425)
T ss_pred HHHHhCCCceEEEeccccchHHHHHhccccCCceEEecCchhhhh
Confidence 3466777888888666778888999999999999998 454443
No 289
>KOG4540|consensus
Probab=60.62 E-value=10 Score=29.98 Aligned_cols=43 Identities=28% Similarity=0.293 Sum_probs=33.6
Q ss_pred HHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec--CCCchh
Q psy15363 52 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL--PGETLA 94 (130)
Q Consensus 52 ~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~--~g~~~~ 94 (130)
.....|..+-|.|.-...+|.++.+-.+..|+|+|+. +|+.++
T Consensus 268 ~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fglP~VaFesPGd~~a 312 (425)
T KOG4540|consen 268 AVRRIYPDARIWLTGHSLGGAIASLLGIRFGLPVVAFESPGDAYA 312 (425)
T ss_pred HHHHhCCCceEEEeccccchHHHHHhccccCCceEEecCchhhhh
Confidence 3466777888888666778888999999999999998 454443
No 290
>KOG1021|consensus
Probab=60.41 E-value=41 Score=27.71 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHhhccccEEEcCCCCC-CchHHHHHHhcC-CcEEecCC
Q psy15363 50 KEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTG-TPVVTLPG 90 (130)
Q Consensus 50 ~~~~~~~~~~~Dv~l~~~~~~-~g~~~lEAla~G-~PvV~~~g 90 (130)
...+...++.+-.||.|..++ ..-.+.||+..| +|||..++
T Consensus 334 ~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~ 376 (464)
T KOG1021|consen 334 PLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDG 376 (464)
T ss_pred cchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCC
Confidence 366778889999999988764 456899999999 89998776
No 291
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=60.38 E-value=72 Score=24.14 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=66.6
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC----CHHHHHHhh--ccccEEEcCCCCCC-ch-HHHH----
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA----AKEEHVRRG--QLADVCLDTPLCNG-HT-TSMD---- 77 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~----~~~~~~~~~--~~~Dv~l~~~~~~~-g~-~~lE---- 77 (130)
.++-+++++.+. ..++.|.+.+++.|..-+++..--+. +.+....+. ...|+.+.|++..- .. ..++
T Consensus 136 ~~g~~vLi~rg~-~gr~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~l~~~~~~d~i~ftS~sav~~f~~~l~~~~~ 214 (266)
T PRK08811 136 APLQAVGLITAP-GGRGLLAPTLQQRGARILRADVYQRVPLRLRASTLAALSRAAPRSVLALSSAEALTLILQQLPDALR 214 (266)
T ss_pred CCCCEEEEEeCC-CcHHHHHHHHHHCCCEEeEEEEEeeeCCCCCHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhhhHH
Confidence 355565544422 45788999999999776666554333 222232322 24788887765431 11 1121
Q ss_pred HHhcCCcEEecCCCchhhhhHHHHHHhcCCCCc-eec--CHHHHHHHHHHhcc
Q psy15363 78 VLWTGTPVVTLPGETLASRVAASQLATLGCPEL-IAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 78 Ala~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~-va~--~~~~y~~~a~~l~~ 127 (130)
....++++|+.. ...+..++..|.... +++ +.+.+++.+..+.+
T Consensus 215 ~~l~~~~~v~is------~rtA~~a~~~G~~~v~vA~~~~~~~l~~a~~~~~~ 261 (266)
T PRK08811 215 RALQQRPVVASS------DRLLDAAHAAGFIHVMRAAGPLPAQLAAAAAAIMT 261 (266)
T ss_pred HHHhCCCEEEeC------HHHHHHHHHcCCCceeeCCCCCHHHHHHHHHhhcC
Confidence 123678888753 346677888898874 553 68889988887765
No 292
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=60.12 E-value=73 Score=24.08 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=35.1
Q ss_pred EEecCC-CHHHHHHhhc--cccEEEcC-CCCCC---chHHHHHHhcCCcEEecC
Q psy15363 43 LFSNVA-AKEEHVRRGQ--LADVCLDT-PLCNG---HTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 43 ~f~g~~-~~~~~~~~~~--~~Dv~l~~-~~~~~---g~~~lEAla~G~PvV~~~ 89 (130)
+..|.+ +.+++..+++ ..++++|. .||.. .+..-=+-..|+|.+=..
T Consensus 46 v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 46 VRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 446888 8888988887 58999995 58863 444555677899999764
No 293
>PRK11524 putative methyltransferase; Provisional
Probab=59.80 E-value=23 Score=27.02 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=26.6
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecCCC
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
.-|++||||- |+|+|.+-|.-+|.=-|...-+
T Consensus 208 ~GD~VLDPF~-GSGTT~~AA~~lgR~~IG~Ei~ 239 (284)
T PRK11524 208 PGDIVLDPFA-GSFTTGAVAKASGRKFIGIEIN 239 (284)
T ss_pred CCCEEEECCC-CCcHHHHHHHHcCCCEEEEeCC
Confidence 4899999984 5689999999999999987643
No 294
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=59.55 E-value=13 Score=24.33 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=27.8
Q ss_pred HHHHHhhCCCcEEEEeecCcc---cHHHHHHHHHHcCCCCCCEEEecC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNV 47 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~~~~l~~~~~~~g~~~~rv~f~g~ 47 (130)
+..++...|+..++++|.+.. -.+.+++.++++|+. |.+...
T Consensus 44 l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~---ve~m~T 88 (110)
T PF04430_consen 44 LEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIG---VEVMDT 88 (110)
T ss_dssp HHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-E---EEEE-H
T ss_pred HHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCe---EEEECH
Confidence 556777888888999997422 246788899998873 555543
No 295
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=59.37 E-value=73 Score=23.84 Aligned_cols=30 Identities=23% Similarity=0.124 Sum_probs=22.4
Q ss_pred cccEE-EcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 59 LADVC-LDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 59 ~~Dv~-l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.+|+. ||...|+.-+--.=+-..|+|||..
T Consensus 178 gadlIvLDCmGYt~~~r~~~~~~~g~PVlLs 208 (221)
T PF07302_consen 178 GADLIVLDCMGYTQEMRDIVQRALGKPVLLS 208 (221)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCEEeH
Confidence 57777 7888887766666677788888863
No 296
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=59.27 E-value=51 Score=22.08 Aligned_cols=79 Identities=15% Similarity=0.048 Sum_probs=42.5
Q ss_pred HHHhhCCCcEEEEeecCcc-----cHHHHHHHHHHcCCCCCCEEEecCCC--HHHH---HHhhccc---cEEEcCCCCCC
Q psy15363 5 FVLKAVPNSILWLLKFPAV-----GEANIQATAQALGLDQHRILFSNVAA--KEEH---VRRGQLA---DVCLDTPLCNG 71 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~-----~~~~l~~~~~~~g~~~~rv~f~g~~~--~~~~---~~~~~~~---Dv~l~~~~~~~ 71 (130)
++.++.|..++++-|+.+. +-+.+++++.+.|+++++|+.-.... .++. ..++... .+.|-|+++..
T Consensus 28 ~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~i~lVTs~~H~ 107 (150)
T cd06259 28 ELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRERGIRSVLLVTSAYHM 107 (150)
T ss_pred HHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHhcCCCeEEEECCHHHH
Confidence 4456667677766664321 23466677778888756666655432 2332 2233333 56666666554
Q ss_pred chHHHHHHhcCC
Q psy15363 72 HTTSMDVLWTGT 83 (130)
Q Consensus 72 g~~~lEAla~G~ 83 (130)
.-+..-+-.+|.
T Consensus 108 ~Ra~~~~~~~~~ 119 (150)
T cd06259 108 PRALLIFRKAGL 119 (150)
T ss_pred HHHHHHHHHcCC
Confidence 444444444444
No 297
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=59.01 E-value=65 Score=23.19 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC----HHHHHHhh--ccccEEEcCCCCCCchHHHHHH-----
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA----KEEHVRRG--QLADVCLDTPLCNGHTTSMDVL----- 79 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~----~~~~~~~~--~~~Dv~l~~~~~~~g~~~lEAl----- 79 (130)
.+-++++..+ ....+.+.+.+++.|.....+......+ ..+....+ ...|+.+.+|+.+--. .++.+
T Consensus 124 ~~~~ili~~~-~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v~~-~~~~~~~~~~ 201 (249)
T PRK05928 124 KGKRVLYLRG-NGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTVRA-FFSLAPELGR 201 (249)
T ss_pred CCCEEEEECC-CCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHHHH-HHHHhcccch
Confidence 3456666664 4567788999999997655554443332 12222221 3689998777643211 12221
Q ss_pred ---hcCCcEEecCCCchhhhhHHHHHHhcCCCC-cee--cCHHHHHHHHHHh
Q psy15363 80 ---WTGTPVVTLPGETLASRVAASQLATLGCPE-LIA--RTHKEYQDIAIRL 125 (130)
Q Consensus 80 ---a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~-~va--~~~~~y~~~a~~l 125 (130)
..++++++.. ..++..++..|+.. +++ .+.+..++...+.
T Consensus 202 ~~~~~~~~~~aiG------~~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 247 (249)
T PRK05928 202 REWLLSCKAVVIG------ERTAEALRELGIKVIIVPDSADNEALLRALKEL 247 (249)
T ss_pred hHHHhCCeEEEeC------HHHHHHHHHcCCCcceecCCCChHHHHHHHHHh
Confidence 2366677643 45778888889865 444 3556666655543
No 298
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=59.00 E-value=27 Score=19.96 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=36.1
Q ss_pred EEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 15 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 15 l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
+.+-|-.+.+++.++++++.+|-. +.+.+.. ....++. ....|...-.|...|+|||+.
T Consensus 3 i~~sg~~~~~~~~l~~~i~~~Gg~-----~~~~lt~--------~~THLI~--~~~~~~K~~~A~~~gi~vV~~ 61 (63)
T PF12738_consen 3 ICFSGFSGKERSQLRKLIEALGGK-----YSKDLTK--------KTTHLIC--SSPEGKKYRKAKEWGIPVVSP 61 (63)
T ss_dssp EEEEEB-TTTCCHHHHHHHCTT-E-----EESSSST--------T-SEEEE--ES--HHHHHHHHHCTSEEEEH
T ss_pred EEECCCCHHHHHHHHHHHHHCCCE-----EeccccC--------CceEEEE--eCCCcHHHHHHHHCCCcEECC
Confidence 344555455678899999998853 4444422 3344442 334567788899999999973
No 299
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=58.99 E-value=82 Score=24.30 Aligned_cols=72 Identities=21% Similarity=0.098 Sum_probs=40.7
Q ss_pred HHhhccccEEEc-CCCCCCchHHHHHHhcCCcEEe-cCCCchhhhhH-HHHHHhcCCCCceecCH-------HHHHHHHH
Q psy15363 54 VRRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVT-LPGETLASRVA-ASQLATLGCPELIARTH-------KEYQDIAI 123 (130)
Q Consensus 54 ~~~~~~~Dv~l~-~~~~~~g~~~lEAla~G~PvV~-~~g~~~~~r~~-~~~l~~~g~~~~va~~~-------~~y~~~a~ 123 (130)
......+||.+| |.|...-.-+-.|..+|+|.|. +.|-.-..... .+..+ .++-+++.|- -.+++.|.
T Consensus 64 ~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~--~v~vv~a~NfSiGvnll~~l~~~aa 141 (266)
T COG0289 64 LLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAE--KVPVVIAPNFSLGVNLLFKLAEQAA 141 (266)
T ss_pred hhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHh--hCCEEEeccchHHHHHHHHHHHHHH
Confidence 344567899998 5676655557778899987664 44422221111 11111 2555677663 45566666
Q ss_pred Hhcc
Q psy15363 124 RLGT 127 (130)
Q Consensus 124 ~l~~ 127 (130)
+++.
T Consensus 142 k~l~ 145 (266)
T COG0289 142 KVLD 145 (266)
T ss_pred HhcC
Confidence 6555
No 300
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=58.89 E-value=44 Score=25.58 Aligned_cols=119 Identities=15% Similarity=0.079 Sum_probs=61.5
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
|+-.+.++|.+|.++..+-+.+..+ ..+...|.+-|.-....-..+.+..-++......-...++.|-+......-...
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 6677889998888999888876633 222357887774211111111111212111112223456666665421110000
Q ss_pred CCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 90 GETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 90 g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
... .......++..+|+.+.... ....-+.+|..|+.+|+
T Consensus 98 ~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 144 (302)
T TIGR01188 98 KDE-AEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD 144 (302)
T ss_pred HHH-HHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 011 11124567888888764432 34566788888888874
No 301
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=58.61 E-value=1e+02 Score=25.35 Aligned_cols=108 Identities=9% Similarity=0.010 Sum_probs=59.3
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHh--hccccEEEcCCCCCCchHHHHHHhc
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRR--GQLADVCLDTPLCNGHTTSMDVLWT 81 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~--~~~~Dv~l~~~~~~~g~~~lEAla~ 81 (130)
.++.+..|+.++++-.....+.+..++.+ |-. -.+.+++.--..-.... +-.-|+.+-.=.+-=.+++.|+-..
T Consensus 70 ~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~---~~~-v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~ 145 (419)
T COG1519 70 RALRERFPDLRILVTTMTPTGAERAAALF---GDS-VIHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINELKRR 145 (419)
T ss_pred HHHHHhCCCCCEEEEecCccHHHHHHHHc---CCC-eEEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHc
Confidence 46778889988877653334444444433 311 23444443222212222 2356776532222236889999999
Q ss_pred CCcEEecCCCc---------hhhhhHHHHHHhcCCCCceecCHHH
Q psy15363 82 GTPVVTLPGET---------LASRVAASQLATLGCPELIARTHKE 117 (130)
Q Consensus 82 G~PvV~~~g~~---------~~~r~~~~~l~~~g~~~~va~~~~~ 117 (130)
|+|++..+++- ...+....+++ .+..++++|+.|
T Consensus 146 ~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~--~i~li~aQse~D 188 (419)
T COG1519 146 GIPLVLVNARLSDRSFARYAKLKFLARLLFK--NIDLILAQSEED 188 (419)
T ss_pred CCCEEEEeeeechhhhHHHHHHHHHHHHHHH--hcceeeecCHHH
Confidence 99999887741 12233344443 556677777654
No 302
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=58.59 E-value=52 Score=23.42 Aligned_cols=103 Identities=11% Similarity=0.082 Sum_probs=57.1
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH---HHHHHhhcc--ccEEEcCCCCCC--chHHHH----HH
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK---EEHVRRGQL--ADVCLDTPLCNG--HTTSMD----VL 79 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~---~~~~~~~~~--~Dv~l~~~~~~~--g~~~lE----Al 79 (130)
.+-++++..+ +..+..+.+.+++.|.....+......+. ++....+.. .|+.+.+++.+. -...+. ..
T Consensus 121 ~~~~il~~~g-~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~~~iiftS~~~v~~f~~~~~~~~~~~ 199 (239)
T cd06578 121 KGKRILRPRG-GRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELLEEGAIDAVLFTSPSTVRNLLELLGKEGRAL 199 (239)
T ss_pred CCCEEEEEcC-cchhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHHHcCCCcEEEEeCHHHHHHHHHHHhhhhhhh
Confidence 4555555543 34567888888888876555555444332 233444444 346776776431 111221 23
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCc-eecC--HHHHHH
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPEL-IART--HKEYQD 120 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~-va~~--~~~y~~ 120 (130)
..++++++.. ..++..++..|+... +++. .++.++
T Consensus 200 ~~~~~~~aig------~~t~~~l~~~g~~~~~~~~~~~~~~l~~ 237 (239)
T cd06578 200 LKNVKIAAIG------PRTAEALRELGLKVVIVAESPTLEALLE 237 (239)
T ss_pred hcCCeEEEEC------HHHHHHHHHcCCCceeeecCCChHHHHh
Confidence 5678888764 346777888888754 4432 444443
No 303
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=57.71 E-value=85 Score=24.09 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=41.0
Q ss_pred HHHHHHHcCCCCCCEEEe-cCCCHHHHHHhhcc--ccEEEcC-CCCCCc--hHHHHHHhcCCcEEecC
Q psy15363 28 IQATAQALGLDQHRILFS-NVAAKEEHVRRGQL--ADVCLDT-PLCNGH--TTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 28 l~~~~~~~g~~~~rv~f~-g~~~~~~~~~~~~~--~Dv~l~~-~~~~~g--~~~lEAla~G~PvV~~~ 89 (130)
..+.+.++|+.+++++-. |+.+.+.-.++++. +|+.+.- |...|| -.+--|...|+|||...
T Consensus 162 ~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 162 VLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHHHhcCCChhhEEEecCCcChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 344567789987787665 77776554555544 8888842 333333 24677889999999864
No 304
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=57.27 E-value=82 Score=23.79 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=46.0
Q ss_pred cCCCCCCEE-EecCCCHHHHHHhhcc--ccEEEcC-CC-CCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCC
Q psy15363 35 LGLDQHRIL-FSNVAAKEEHVRRGQL--ADVCLDT-PL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPE 109 (130)
Q Consensus 35 ~g~~~~rv~-f~g~~~~~~~~~~~~~--~Dv~l~~-~~-~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~ 109 (130)
+|+.+++++ ..|+.+.+.-.++++. +|+++.= +. .+.-..+--|..+|+|||...-... ..+.
T Consensus 163 ~g~~~~~iiam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~------------~~~~ 230 (248)
T PRK08057 163 LGLPRAEIIALRGPFSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPAL------------PYAD 230 (248)
T ss_pred CCCChhhEEEeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC------------CCCC
Confidence 677666654 4588886655566655 6777621 11 1112346668889999998754311 0011
Q ss_pred ceecCHHHHHHHHHHh
Q psy15363 110 LIARTHKEYQDIAIRL 125 (130)
Q Consensus 110 ~va~~~~~y~~~a~~l 125 (130)
-+..+.++.++...++
T Consensus 231 ~~~~~~~e~~~~l~~~ 246 (248)
T PRK08057 231 REFEDVAELVAWLRHL 246 (248)
T ss_pred cccCCHHHHHHHHHHh
Confidence 2346777777766554
No 305
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=57.05 E-value=37 Score=22.14 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=41.6
Q ss_pred EEEeecCccc----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh--ccccEEEcCCCCCCchHHHHHH--hcCCcEE
Q psy15363 15 LWLLKFPAVG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRG--QLADVCLDTPLCNGHTTSMDVL--WTGTPVV 86 (130)
Q Consensus 15 l~i~g~~~~~----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~--~~~Dv~l~~~~~~~g~~~lEAl--a~G~PvV 86 (130)
++++++.|.. -+.+++.++++|++ -.|...+. .++.... ..+|++|-+..-..-..-++.. ..|+||.
T Consensus 4 ILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~---~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~ 79 (104)
T PRK09590 4 ALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITA---TEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVV 79 (104)
T ss_pred EEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecH---HHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEE
Confidence 4444434432 45778889999986 34444443 3333332 2589998655433333344444 4689999
Q ss_pred ecCC
Q psy15363 87 TLPG 90 (130)
Q Consensus 87 ~~~g 90 (130)
+.+.
T Consensus 80 ~I~~ 83 (104)
T PRK09590 80 QIPP 83 (104)
T ss_pred EeCH
Confidence 8764
No 306
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=56.45 E-value=32 Score=28.67 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=49.2
Q ss_pred EEEEeecCc------ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCcE
Q psy15363 14 ILWLLKFPA------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPV 85 (130)
Q Consensus 14 ~l~i~g~~~------~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~Pv 85 (130)
.+-|+|... .+-..+++++++.|+. -+++|.+..+.+++.. +..|++-+-.+++ .|..+.+.| -+|+|.
T Consensus 160 ~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~-vn~v~p~g~s~~dl~~-l~~A~~NIv~~~~-~g~~~A~~Le~~fGiP~ 236 (511)
T TIGR01278 160 SVNLLGPASLGFHHRHDLIELRRLLKTLGIE-VNVVAPWGASIADLAR-LPAAWLNICPYRE-IGLMAAEYLKEKFGQPY 236 (511)
T ss_pred cEEEEeCCCCCCCCHHHHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHh-cccCcEEEEechH-HHHHHHHHHHHHhCCCc
Confidence 356676421 2346899999999997 6677777777788765 5678887766664 344555555 569998
Q ss_pred Ee
Q psy15363 86 VT 87 (130)
Q Consensus 86 V~ 87 (130)
+.
T Consensus 237 i~ 238 (511)
T TIGR01278 237 IT 238 (511)
T ss_pred cc
Confidence 85
No 307
>KOG0058|consensus
Probab=56.31 E-value=20 Score=31.30 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=68.8
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCC-CCCCEEEecCCCHHHHH-HhhccccEEEcC-CCCCCchHHHHHHhcCCcEEe
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGL-DQHRILFSNVAAKEEHV-RRGQLADVCLDT-PLCNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~-~~~rv~f~g~~~~~~~~-~~~~~~Dv~l~~-~~~~~g~~~lEAla~G~PvV~ 87 (130)
|.-..-++|.+|.++..+..++.++=- ...+|.+-| +|-.++- .+|+ -.|-+-. =|--++.++.|=.+.|++-++
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG-~~i~~~~~~~lr-~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t 570 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG-VPISDINHKYLR-RKIGLVGQEPVLFSGSIRENIAYGLDNAT 570 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC-eehhhcCHHHHH-HHeeeeeccceeecccHHHHHhcCCCCCC
Confidence 667888999878899999999887732 224565555 6644442 3343 4444422 244466889999999999443
Q ss_pred cCCCchhhhhH--HHHHHhc--CCC------C-ceecCHHHHHHHHHHhccCC
Q psy15363 88 LPGETLASRVA--ASQLATL--GCP------E-LIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 88 ~~g~~~~~r~~--~~~l~~~--g~~------~-~va~~~~~y~~~a~~l~~d~ 129 (130)
...-.-+++.+ ..++..+ |.+ + -..-....=+++|-+|++||
T Consensus 571 ~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 571 DEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred HHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence 22111112211 1122221 111 1 22345678899999999998
No 308
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=56.27 E-value=12 Score=26.56 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=26.9
Q ss_pred ccEEEcCCCCCCchHHHHHHhcCCc-----------EEecCCCchhhhhHHHHHHhcCCCC
Q psy15363 60 ADVCLDTPLCNGHTTSMDVLWTGTP-----------VVTLPGETLASRVAASQLATLGCPE 109 (130)
Q Consensus 60 ~Dv~l~~~~~~~g~~~lEAla~G~P-----------vV~~~g~~~~~r~~~~~l~~~g~~~ 109 (130)
-|+++||+ ++.|+-++||..++.. ++..+-+.-.-+.+..=+...|+.+
T Consensus 29 ~~~vlDP~-CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~ 88 (179)
T PF01170_consen 29 GDVVLDPF-CGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED 88 (179)
T ss_dssp TS-EEETT--TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred CCEEeecC-CCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence 46888887 4668889999766644 4465544332222333344556654
No 309
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=56.20 E-value=53 Score=29.20 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=47.4
Q ss_pred EEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHH
Q psy15363 42 ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDI 121 (130)
Q Consensus 42 v~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~ 121 (130)
+-..|....+++.-.=..+|+++.-.....+...-+|-..++|+||+.... ..||++.-.+++++-++.
T Consensus 281 v~~~Gn~~~qe~~i~TGavD~~VvD~QCi~p~l~~~a~c~~tklItTs~ka-----------~~gl~d~t~~~~~~i~~~ 349 (784)
T TIGR00314 281 AKIVGPLSRQLRVIRAGVADVIIVDEQCIRADILEECKKMGIPLIATNDKA-----------CLGLPDVSDEDPDKIVDY 349 (784)
T ss_pred CcccCcHHHHHHHHHcCCCcEEEEecccCcccHHHHHHhcCCeEEEcchHH-----------hcCCCcccCCCHHHHHHH
Confidence 344555556666655677999986666666677888888999999986531 237777766676655554
Q ss_pred H
Q psy15363 122 A 122 (130)
Q Consensus 122 a 122 (130)
.
T Consensus 350 l 350 (784)
T TIGR00314 350 L 350 (784)
T ss_pred H
Confidence 3
No 310
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=56.12 E-value=87 Score=27.89 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=50.1
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCE-------------------EEecCCCHHHHHHhhccccEEEcCCCCCCch
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRI-------------------LFSNVAAKEEHVRRGQLADVCLDTPLCNGHT 73 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv-------------------~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~ 73 (130)
..+++.|++....+.+.+++++.++. +.| -..|....+++.-.=...|+++.-.-...+.
T Consensus 238 vnI~vhGHnp~l~~~iv~~~~~~el~-~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~TGavD~~VvD~QCi~p~ 316 (781)
T PRK00941 238 PVILVIGHNVAPGTYIIDYLEENGLT-DKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRSGIPDVIVVDEQCVRTD 316 (781)
T ss_pred cEEEEECCCchHHHHHHHHHhCcchh-hCceEEEEecccchHhhhccCCcccCcHHHHHHHHHcCCCcEEEEecccCccc
Confidence 45667888644455566665544443 333 3344444555555556799998666666667
Q ss_pred HHHHHHhcCCcEEecCCC
Q psy15363 74 TSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 74 ~~lEAla~G~PvV~~~g~ 91 (130)
..-+|--.|.++|++...
T Consensus 317 L~eiA~~ygt~lItTs~k 334 (781)
T PRK00941 317 ILEEAKKLGIPVIATNDK 334 (781)
T ss_pred HHHHHHHhCCCEEEeccc
Confidence 788889999999998754
No 311
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=55.93 E-value=58 Score=23.02 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=43.2
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcC
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTG 82 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G 82 (130)
..+.+.+++|.+......+.+.+.+.|. +|.+..+.. +++...+..+|+.+.+.+-.. ...-|-+--|
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~---~V~v~~r~~-~~l~~~l~~aDiVIsat~~~~-ii~~~~~~~~ 109 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVCHSKT-KNLKEHTKQADIVIVAVGKPG-LVKGDMVKPG 109 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC---EEEEEECCc-hhHHHHHhhCCEEEEcCCCCc-eecHHHccCC
Confidence 4578999999632224446677777775 477777653 567788999999987654322 3344444334
No 312
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=55.78 E-value=72 Score=22.66 Aligned_cols=117 Identities=8% Similarity=0.004 Sum_probs=60.5
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCC----CHHHHHHhhccccEE-EcCCCC-CCchHHHHHHhcCC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVA----AKEEHVRRGQLADVC-LDTPLC-NGHTTSMDVLWTGT 83 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~----~~~~~~~~~~~~Dv~-l~~~~~-~~g~~~lEAla~G~ 83 (130)
|+-.+.++|.+|.++..|-+.+... .....+|.|-|.- +..+... ++. .+. +...+. -...++.|-+..+.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~-~~~-~i~~v~q~~~~~~~~t~~~~l~~~~ 103 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY-LRR-KIGVVFQDFRLLPDRNVYENVAFAL 103 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH-HHH-heEEEecCchhccCCcHHHHHHHHH
Confidence 6677889998888999888877633 2222567776642 1111111 111 222 222221 12346666665543
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
..-......... ....++...|++++... ....-+.+|..|+.+|+
T Consensus 104 ~~~~~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (214)
T cd03292 104 EVTGVPPREIRK-RVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT 156 (214)
T ss_pred HHcCCCHHHHHH-HHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCC
Confidence 211001111111 23467777788765433 34556777888877763
No 313
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=55.67 E-value=25 Score=27.03 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=51.7
Q ss_pred cEEEEee-cCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 13 SILWLLK-FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g-~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.|..++- .+.+..++..+-+++-|+.-|-..|+|-+++..++..+ ..|||.|-- ..=+|.-+.++|.+-.
T Consensus 187 iRtalVTAR~apah~RvI~TLr~Wgv~vDEafFLgG~~K~~vL~~~-~phIFFDDQ-----~~H~~~a~~~vps~hV 257 (264)
T PF06189_consen 187 IRTALVTARSAPAHERVIRTLRSWGVRVDEAFFLGGLPKGPVLKAF-RPHIFFDDQ-----DGHLESASKVVPSGHV 257 (264)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHhCCCchhHHHHhh-CCCEeecCc-----hhhhhHhhcCCCEEec
Confidence 5666655 23455677778889999998999999999999988877 689988643 2345666678887643
No 314
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=55.55 E-value=21 Score=25.35 Aligned_cols=39 Identities=28% Similarity=0.443 Sum_probs=25.4
Q ss_pred HHhhCC-CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe
Q psy15363 6 VLKAVP-NSILWLLKFPAVGEANIQATAQALGLDQHRILFS 45 (130)
Q Consensus 6 il~~~P-~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~ 45 (130)
+++..+ +..+++.| +......+++.++++|++.++|+.-
T Consensus 169 ~~~~~~~~~~vyicG-p~~m~~~~~~~l~~~gv~~~~i~~e 208 (211)
T cd06185 169 LLAAPPAGTHVYVCG-PEGMMDAVRAAAAALGWPEARLHFE 208 (211)
T ss_pred HhccCCCCCEEEEEC-CHHHHHHHHHHHHHcCCChhheEee
Confidence 344444 45666666 3455667888888899987777753
No 315
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=55.34 E-value=78 Score=25.53 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=56.5
Q ss_pred EEEEeecC------cccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCcE
Q psy15363 14 ILWLLKFP------AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPV 85 (130)
Q Consensus 14 ~l~i~g~~------~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~Pv 85 (130)
.+-++|.. ..+...+++++++.|+. -+.+|.+..+.+++.. +..|++-+-.++.. +..+.+.| -.|+|.
T Consensus 164 ~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~-v~~~~~~~~~~~~i~~-~~~A~lniv~~~~~-~~~~a~~L~~~~GiP~ 240 (430)
T cd01981 164 SVNLIGPSSLGFHNRHDCRELKRLLHTLGIE-VNVVIPEGASVDDLNE-LPKAWFNIVPYREY-GLSAALYLEEEFGMPS 240 (430)
T ss_pred cEEEEcCCCCCCCCcchHHHHHHHHHHcCCe-EEEEEcCCCCHHHHHh-hhhCeEEEEecHHH-HHHHHHHHHHHhCCCe
Confidence 45666642 12457899999999997 5677888788888765 55677776544432 34455555 469999
Q ss_pred EecC--CCchhhhhHHHHHHhcCCC
Q psy15363 86 VTLP--GETLASRVAASQLATLGCP 108 (130)
Q Consensus 86 V~~~--g~~~~~r~~~~~l~~~g~~ 108 (130)
+... |-.--.++-..+.+.+|.+
T Consensus 241 ~~~~p~G~~~t~~~l~~i~~~~g~~ 265 (430)
T cd01981 241 VKITPIGVVATARFLREIQELLGIQ 265 (430)
T ss_pred EeccCCChHHHHHHHHHHHHHhCCc
Confidence 8651 2112233444455556655
No 316
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=55.06 E-value=61 Score=24.31 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchH---------------HHHHHhcCCcEEecC
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTT---------------SMDVLWTGTPVVTLP 89 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~---------------~lEAla~G~PvV~~~ 89 (130)
.+..++.++++|+....+...- .|.+++...+..+|+.. -+||+| +.|+...|+|.+...
T Consensus 51 v~k~~~~l~~lg~~v~~L~l~~-~~~~~Ie~~l~~~d~Iy----VgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~S 125 (224)
T COG3340 51 VEKVRNALAKLGLEVSELHLSK-PPLAAIENKLMKADIIY----VGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWS 125 (224)
T ss_pred HHHHHHHHHHcCCeeeeeeccC-CCHHHHHHhhhhccEEE----ECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEec
Confidence 4567778889998755555433 44577878888899876 455555 689999999999763
No 317
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=54.20 E-value=78 Score=22.59 Aligned_cols=119 Identities=10% Similarity=0.061 Sum_probs=62.8
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCC----CHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcCCc
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVA----AKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGTP 84 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~----~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G~P 84 (130)
|+-.+.++|.+|.++..|-+.+..+ .....+|.+-|.- +..+...+.+..-.++...+. -.+.++.|-+..+..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 6678889998888998888876532 2233568776642 111111112111122322221 234566776665532
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
.-..... ........+++.+|+.++... ....-+.+|..|+.+|+
T Consensus 109 ~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 109 LAGVPKK-ERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hcCCCHH-HHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 1100000 111223567788888765443 34455788888888774
No 318
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=54.17 E-value=78 Score=22.59 Aligned_cols=118 Identities=11% Similarity=0.044 Sum_probs=62.4
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCC----HHHHHHhhccccEEEcCCCC-CCchHHHHHHhcCCc
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAA----KEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGTP 84 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~----~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G~P 84 (130)
|+-.+.++|.+|.++..|-+.+.-+ .....+|.|-|.-- ..+.. .++.-=-|+...+. -...++.|-+..+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 106 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP-FLRRHIGMVFQDHRLLSDRTVYDNVAFPLR 106 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH-HHHHhceEEecCccccccccHHHHHHHHHH
Confidence 6678889998888999888876633 22235788877421 11111 11111122322222 123466777665422
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceecC-------HHHHHHHHHHhccCCC
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIART-------HKEYQDIAIRLGTDRD 130 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~~-------~~~y~~~a~~l~~d~e 130 (130)
.-..... ........++..+|++++.... ...-+.+|..|+.+|+
T Consensus 107 ~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (216)
T TIGR00960 107 IIGVPPR-DANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPP 158 (216)
T ss_pred hcCCCHH-HHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1000111 1112235677888887655433 4566778888888774
No 319
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=54.05 E-value=96 Score=24.57 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=22.4
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
.=|+.+-.-+..-.+.+.||.-+|+|||++-
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaiv 182 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIV 182 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEe
Confidence 3455543334445689999999999999883
No 320
>PRK10908 cell division protein FtsE; Provisional
Probab=53.80 E-value=81 Score=22.66 Aligned_cols=117 Identities=13% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCC----CHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcCC
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVA----AKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGT 83 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~----~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G~ 83 (130)
.|+-.+.++|.+|.++..|-+.+..+ .....+|.|-|.- +..+.. .++..-.|+...+. -...++.|-+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP-FLRRQIGMIFQDHHLLMDRTVYDNVAIPL 104 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH-HHHhheEEEecCccccccccHHHHHHhHH
Confidence 36677889998888999888877632 2223578887742 111211 12221123322222 23456677666542
Q ss_pred cEEecCCCchh--hhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 84 PVVTLPGETLA--SRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 84 PvV~~~g~~~~--~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
-. .+.... ......++...|+.++... ....-+.+|..|+.+|+
T Consensus 105 ~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 105 II---AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred Hh---cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 11 111111 1123467778888765443 34566888888888774
No 321
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=53.78 E-value=70 Score=25.28 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=50.6
Q ss_pred EEEEeecCcc---cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhc--CCcEEec
Q psy15363 14 ILWLLKFPAV---GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWT--GTPVVTL 88 (130)
Q Consensus 14 ~l~i~g~~~~---~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~--G~PvV~~ 88 (130)
.+-++|.... +...+++++++.|+. -+..|.+..+.+|+.+ +..|++.+-..++ ++..+.+.|.- |+|.+..
T Consensus 146 ~VNiiG~~~~~~~d~~el~~lL~~~Gi~-v~~~~~~~~t~~e~~~-~~~A~lniv~~~~-~~~~~a~~L~e~~giP~~~~ 222 (398)
T PF00148_consen 146 SVNIIGGSPLGPGDLEELKRLLEELGIE-VNAVFPGGTTLEEIRK-APEAALNIVLCPE-GGPYAAEWLEERFGIPYLYF 222 (398)
T ss_dssp EEEEEEESTBTHHHHHHHHHHHHHTTEE-EEEEEETTBCHHHHHH-GGGSSEEEESSCC-HHHHHHHHHHHHHT-EEEEE
T ss_pred ceEEecCcCCCcccHHHHHHHHHHCCCc-eEEEeCCCCCHHHHHh-CCcCcEEEEeccc-hhhHHHHHHHHHhCCCeeec
Confidence 4456664322 456889999999996 6788878888888864 6678888766666 23346676664 9999984
Q ss_pred C
Q psy15363 89 P 89 (130)
Q Consensus 89 ~ 89 (130)
+
T Consensus 223 ~ 223 (398)
T PF00148_consen 223 P 223 (398)
T ss_dssp C
T ss_pred c
Confidence 3
No 322
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=53.52 E-value=97 Score=27.65 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEEEcCCCCCCchHHHHHH-hcCCcEEecC
Q psy15363 28 IQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVCLDTPLCNGHTTSMDVL-WTGTPVVTLP 89 (130)
Q Consensus 28 l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~l~~~~~~~g~~~lEAl-a~G~PvV~~~ 89 (130)
+++.+.+.|++++-|.++...+.+.-..+++. .|... ++|+..+.++. ..++||+...
T Consensus 158 ~~~~l~~aG~p~g~v~vv~g~~~~~~~~L~~~~~vd~I~----fTGs~~v~~~a~~~~~pv~~e~ 218 (862)
T PRK13805 158 VLDAAVAAGAPKDIIQWIEEPSVELTNALMNHPGIALIL----ATGGPGMVKAAYSSGKPALGVG 218 (862)
T ss_pred HHHHHHHcCcCcccEEEecCCCHHHHHHHHcCCCccEEE----ecCCHHHHHHHHhcCCCeEEEC
Confidence 34445678998777888754444433444443 55555 55555555544 3789987664
No 323
>KOG2741|consensus
Probab=53.46 E-value=76 Score=25.45 Aligned_cols=96 Identities=15% Similarity=0.020 Sum_probs=59.8
Q ss_pred HHHHHhhCC--CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCC-chHHHHHH
Q psy15363 3 DIFVLKAVP--NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVL 79 (130)
Q Consensus 3 w~~il~~~P--~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~-g~~~lEAl 79 (130)
|.+.+...| +..++-+.+ +..++-++++++++++ +....| +++++.. =..+|+..-+.|..+ --++.-++
T Consensus 21 f~~al~~~p~s~~~Ivava~--~s~~~A~~fAq~~~~~--~~k~y~--syEeLak-d~~vDvVyi~~~~~qH~evv~l~l 93 (351)
T KOG2741|consen 21 FVRALHTLPESNHQIVAVAD--PSLERAKEFAQRHNIP--NPKAYG--SYEELAK-DPEVDVVYISTPNPQHYEVVMLAL 93 (351)
T ss_pred HHHHhccCcccCcEEEEEec--ccHHHHHHHHHhcCCC--CCcccc--CHHHHhc-CCCcCEEEeCCCCccHHHHHHHHH
Confidence 567777889 455444543 4667788899999995 333333 3466632 234788765666543 56788999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhc
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATL 105 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~ 105 (130)
..|++|++-+--.+---....++.+.
T Consensus 94 ~~~K~VL~EKPla~n~~e~~~iveaA 119 (351)
T KOG2741|consen 94 NKGKHVLCEKPLAMNVAEAEEIVEAA 119 (351)
T ss_pred HcCCcEEecccccCCHHHHHHHHHHH
Confidence 99999998654333222234444443
No 324
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=53.07 E-value=45 Score=21.83 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=26.3
Q ss_pred HHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC
Q psy15363 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA 49 (130)
Q Consensus 6 il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~ 49 (130)
+|+++|. ++++-....++-.+|..++++.|+. |...+.++
T Consensus 51 LLRRvP~-~vLVr~~~~pd~~Hl~~LA~ekgVp---Ve~~~d~~ 90 (100)
T PF15608_consen 51 LLRRVPW-KVLVRDPDDPDLAHLLLLAEEKGVP---VEVYPDLP 90 (100)
T ss_pred HHhcCCC-EEEECCCCCccHHHHHHHHHHcCCc---EEEeCCCC
Confidence 5678884 4444433345678899999999985 66655554
No 325
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=52.97 E-value=17 Score=24.79 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCCCCEEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSN 46 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g 46 (130)
+.+++++.++|++++||++.=
T Consensus 81 ~~lke~l~elgie~eRv~~~w 101 (132)
T COG1908 81 ELLKELLKELGIEPERVRVLW 101 (132)
T ss_pred HHHHHHHHHhCCCcceEEEEE
Confidence 467889999999999998763
No 326
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=52.51 E-value=1e+02 Score=23.40 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=72.5
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcC-CCCCCEEEecCCC--HHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEe
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALG-LDQHRILFSNVAA--KEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g-~~~~rv~f~g~~~--~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~ 87 (130)
+.-.++|+|.+|.++..+-+-++.+. ++..+|.+-|... ..++..+=+..-.+.-.|..=-..|++|=..-+ |+.+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~la-p~~v 105 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA-PVKV 105 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhh-hHHH
Confidence 45677889977888988888777664 3345788888432 223333222332322222111136777766655 4444
Q ss_pred cC-CCchhhhhHHHHHHhcCCCCc-------eecCHHHHHHHHHHhccCCC
Q psy15363 88 LP-GETLASRVAASQLATLGCPEL-------IARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 88 ~~-g~~~~~r~~~~~l~~~g~~~~-------va~~~~~y~~~a~~l~~d~e 130 (130)
.. ...-+...+..+|...|+.+- ..-....-+++|-.|+-||+
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCC
Confidence 33 233344467788888999752 23467889999999998885
No 327
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=52.20 E-value=19 Score=26.00 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=19.2
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEE
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILF 44 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f 44 (130)
+..+++.| +....+.+++.+++.|++.++|++
T Consensus 201 ~~~v~icG-p~~m~~~v~~~l~~~Gv~~~~i~~ 232 (235)
T cd06217 201 GRRVYVCG-PPAFVEAATRLLLELGVPRDRIRT 232 (235)
T ss_pred CCEEEEEC-CHHHHHHHHHHHHHcCCCHHHEee
Confidence 34555555 334555666767777776666654
No 328
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=51.75 E-value=43 Score=18.89 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCcEEEEee-cCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEe
Q psy15363 11 PNSILWLLK-FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 11 P~a~l~i~g-~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~ 87 (130)
.+.++.+.| .....++.++++++++|-. +... .+.. .+..++.+.+.........+...++|+|.
T Consensus 4 ~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~---~~~~--~~~~-------~~thvi~~~~~~~~~~~~~~~~~~~~iV~ 69 (80)
T smart00292 4 KGKVFVITGKFDKNERDELKELIEALGGK---VTSS--LSSK-------TTTHVIVGSPEGGKLELLLAIALGIPIVT 69 (80)
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHcCCE---Eecc--cCcc-------ceeEEEEcCCCCccHHHHHHHHcCCCCcc
Confidence 356777777 3345688999999999843 2221 1110 34444433322222226888899999996
No 329
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=51.74 E-value=66 Score=23.01 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=59.0
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEE-EcCCC-CCCchHHHHHHhcCCcEEe
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPL-CNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~-~~~g~~~lEAla~G~PvV~ 87 (130)
|+-.+.++|.+|.++..|-+.+..+ ......|.+-|.-..... ..++. .+. +...+ .-...++.|-+..+.-.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 104 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQ-SLGYCPQFDALFDELTVREHLRFYARLKG 104 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhh-hEEEecCcCCccccCCHHHHHHHHHHHcC
Confidence 5667889998888999888877643 222357877664211111 11111 222 22212 1113445555543210000
Q ss_pred cCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 88 LPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 88 ~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
.+.... ......+++..|++++... ....-+.+|..|+.+|+
T Consensus 105 ~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (220)
T cd03263 105 LPKSEI-KEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153 (220)
T ss_pred CCHHHH-HHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 011111 1223567777888765433 33455778888887774
No 330
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=51.54 E-value=44 Score=20.56 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=30.3
Q ss_pred HHHHHh--hCCCcEEEEeecCcc---c----------HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 3 DIFVLK--AVPNSILWLLKFPAV---G----------EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~--~~P~a~l~i~g~~~~---~----------~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
++++++ ..++ .+.|.|.... . -..+++++.+.|++++|+...|.-
T Consensus 20 l~~~l~~~~~~~-~i~I~G~td~~g~~~~n~~LS~~RA~~V~~~L~~~gi~~~ri~~~~~G 79 (97)
T PF00691_consen 20 LAKILKYPGNKD-QIEIEGHTDSTGSAEYNQELSQRRAEAVKQYLVENGIPPERISVVGYG 79 (97)
T ss_dssp HHHHHHSTTSTT-EEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEEET
T ss_pred HHHHHhCcCCCC-eEEEEEEEcCcchhhHHhHHHHHHHHHHHHHHHHcCCChHhEEEEEEc
Confidence 556676 4556 7999985321 1 125667777899998999887654
No 331
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=51.47 E-value=76 Score=25.92 Aligned_cols=74 Identities=11% Similarity=-0.002 Sum_probs=47.9
Q ss_pred cEEEEeecCc--ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCcEEec
Q psy15363 13 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~~--~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~PvV~~ 88 (130)
-.+-|+|... .+.+.+++++++.|+. -...|.+..+.+++.. +..|.+-+-.++.. +..+.+.| -+|+|.+..
T Consensus 192 ~~VNiig~~~~~~d~~el~~lL~~~Gl~-v~~~~~~~~t~eei~~-~~~A~lniv~~~~~-~~~~A~~L~er~GiP~~~~ 268 (443)
T TIGR01862 192 YDVNIIGEYNIGGDAWVMRIYLEEMGIQ-VVATFTGDGTYDEIRL-MHKAKLNLVHCARS-ANYIANELEERYGIPWMKI 268 (443)
T ss_pred CeEEEEccCcCcccHHHHHHHHHHcCCe-EEEEECCCCCHHHHHh-cccCCEEEEEChHH-HHHHHHHHHHHhCCCeEec
Confidence 3566666321 2456899999999997 5567777777888865 55666665444432 23344444 369999976
Q ss_pred C
Q psy15363 89 P 89 (130)
Q Consensus 89 ~ 89 (130)
+
T Consensus 269 ~ 269 (443)
T TIGR01862 269 D 269 (443)
T ss_pred c
Confidence 5
No 332
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=51.31 E-value=1.2e+02 Score=23.93 Aligned_cols=119 Identities=11% Similarity=0.111 Sum_probs=65.6
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCC----CHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcE
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVA----AKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~----~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~Pv 85 (130)
|+-.+-++|.+|.++..|-+.+..+ ..+..+|.+-|.- +..++...-+..-+....+..-...++.|-++.+...
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 5667889998888999988887643 2223578887742 2233322222222111122222235667766654321
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
-..+......| ...+++.+|+.++... ....-+.+|..|+.+|+
T Consensus 110 ~~~~~~~~~~~-v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 110 DNTPKDEIKRK-VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred cCCCHHHHHHH-HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 00111111222 4577888899775432 34677888999998875
No 333
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=51.07 E-value=18 Score=24.52 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=18.8
Q ss_pred HHhhCCCcEEEEeecCc-----ccHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 6 VLKAVPNSILWLLKFPA-----VGEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 6 il~~~P~a~l~i~g~~~-----~~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
+.++.+..++++-|+.+ ++-+.+++.+.++|++.++|++.+..
T Consensus 32 L~~~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s 79 (155)
T PF02698_consen 32 LYKAGYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKS 79 (155)
T ss_dssp HHH-HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE---
T ss_pred HHhcCCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCC
Confidence 44455666677766322 22356677777778876677665553
No 334
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=50.98 E-value=34 Score=26.11 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=30.7
Q ss_pred HHhhCCCc--EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH
Q psy15363 6 VLKAVPNS--ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK 50 (130)
Q Consensus 6 il~~~P~a--~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~ 50 (130)
+....|+- .+++.| +++..+.++..+.++|.+.+|+++-++-+.
T Consensus 188 l~~~~~~~~r~~y~CG-p~~fm~av~~~l~~~g~~~~~vh~E~F~~~ 233 (266)
T COG1018 188 LLSAAPDGGREVYLCG-PGPFMQAVRLALEALGVPDDRVHLEGFGPM 233 (266)
T ss_pred HhccCCCCCCEEEEEC-CHHHHHHHHHHHHHcCCChhcEEEeecCCC
Confidence 33344433 444555 567778888888899998889998877754
No 335
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=50.87 E-value=44 Score=20.48 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHcCCCCCCEEEecCC---CHHHHHHhhccccEEEc
Q psy15363 24 GEANIQATAQALGLDQHRILFSNVA---AKEEHVRRGQLADVCLD 65 (130)
Q Consensus 24 ~~~~l~~~~~~~g~~~~rv~f~g~~---~~~~~~~~~~~~Dv~l~ 65 (130)
.|+.+.+.+.++|..+-...+.+.- +.+-.+.....||+|+-
T Consensus 14 eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ 58 (83)
T PF13271_consen 14 ERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFIL 58 (83)
T ss_pred HHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEE
Confidence 4677888888888764444444322 24556778889999974
No 336
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=50.75 E-value=15 Score=22.66 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=14.4
Q ss_pred hhCCCcEEEEeecCcccHHHHHHHHH
Q psy15363 8 KAVPNSILWLLKFPAVGEANIQATAQ 33 (130)
Q Consensus 8 ~~~P~a~l~i~g~~~~~~~~l~~~~~ 33 (130)
...+.++|+++|. +-+.+.|++.+.
T Consensus 67 ~~~~~~~lV~IG~-~ld~~~l~~~l~ 91 (94)
T PF07683_consen 67 GEDRDSRLVFIGK-NLDKEALREALD 91 (94)
T ss_dssp -S---EEEEEEEE-S--HHHHHHHHH
T ss_pred CCCCCeEEEEEEC-CCCHHHHHHHHH
Confidence 3457789999997 466777777655
No 337
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=50.40 E-value=18 Score=23.86 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=22.0
Q ss_pred CcEEEEeecCcccHHHHHHHHH-HcCCCCCCEEEecC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQ-ALGLDQHRILFSNV 47 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~-~~g~~~~rv~f~g~ 47 (130)
+..+++.|+ ...-..+++.++ ++|++.+++.+.|+
T Consensus 80 ~~~vW~AgE-~~~~r~lR~~l~~~~g~~~~~~~~~gY 115 (119)
T PF04954_consen 80 DGYVWVAGE-ASAVRALRRHLREERGLPRDRIYASGY 115 (119)
T ss_dssp -EEEEEEEE-HHHHHHHHHHHHHH----GGGEEEEEE
T ss_pred CeEEEEEec-HHHHHHHHHHHHHhhCCCHHHeEEEEe
Confidence 577777775 445567888776 77998788998875
No 338
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=50.30 E-value=84 Score=22.28 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCC-----HHHHHHhhccccEEEcCCCCCCc--hHHHHH----HhcCCcEEecCCCch
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAA-----KEEHVRRGQLADVCLDTPLCNGH--TTSMDV----LWTGTPVVTLPGETL 93 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~-----~~~~~~~~~~~Dv~l~~~~~~~g--~~~lEA----la~G~PvV~~~g~~~ 93 (130)
.+.+.+.+++.|.....+-+....+ ..+....+...|..+.+++.+-- ...+.. ...++|+++..
T Consensus 10 ~~~l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG---- 85 (239)
T cd06578 10 ADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGLKIAAVG---- 85 (239)
T ss_pred hHHHHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHHHHHHHHHHHHhhCCccccCCEEEEEC----
Confidence 4667777777776533333333322 12223333456777767664311 111221 34566666543
Q ss_pred hhhhHHHHHHhcCCCCce---ecCHHHHHHHHHH
Q psy15363 94 ASRVAASQLATLGCPELI---ARTHKEYQDIAIR 124 (130)
Q Consensus 94 ~~r~~~~~l~~~g~~~~v---a~~~~~y~~~a~~ 124 (130)
..++..++..|..... ..+.+++.+...+
T Consensus 86 --~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~ 117 (239)
T cd06578 86 --PKTAEALREAGLTADFVPEEGDSEGLLELLEL 117 (239)
T ss_pred --HHHHHHHHHcCCCceeCCCccCHHHHHHHHHh
Confidence 3456666666665432 1344555544443
No 339
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=50.20 E-value=1e+02 Score=25.15 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=43.4
Q ss_pred HhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC-----------------HHHHHHhhccccEEEcCCCC
Q psy15363 7 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA-----------------KEEHVRRGQLADVCLDTPLC 69 (130)
Q Consensus 7 l~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~-----------------~~~~~~~~~~~Dv~l~~~~~ 69 (130)
+....+.+.+++|.|+..+ .+.+.+.++|+ .+|.+..+.. .+++...+..+|+.+.+.+-
T Consensus 176 ~~~l~~kkvlviGaG~~a~-~va~~L~~~g~--~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 176 LDNISSKNVLIIGAGQTGE-LLFRHVTALAP--KQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred hcCccCCEEEEEcCcHHHH-HHHHHHHHcCC--CEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC
Confidence 3345677889999754333 33344455676 4666665542 24445566778999865433
Q ss_pred CCchHHHHHHhcCCcEEec
Q psy15363 70 NGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 70 ~~g~~~lEAla~G~PvV~~ 88 (130)
...+...|. ..+.|.+..
T Consensus 253 ~~~vi~~~~-~~~~~~~~i 270 (414)
T PRK13940 253 LEYIVTCKY-VGDKPRVFI 270 (414)
T ss_pred CCeeECHHH-hCCCCeEEE
Confidence 222322332 346676654
No 340
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=50.10 E-value=1.1e+02 Score=22.94 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=78.9
Q ss_pred CcEEEEeecCcccHHHHHHH-HHHcCCCCCCEEEecC----CCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEE
Q psy15363 12 NSILWLLKFPAVGEANIQAT-AQALGLDQHRILFSNV----AAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVV 86 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~-~~~~g~~~~rv~f~g~----~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV 86 (130)
....+++|.+|.++..+-++ ..+.......|.|-|. .+..+++-+=+..-++.--|..--..++.|=.|.-+=|+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~ 107 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI 107 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc
Confidence 34466788777788877775 3444444467888664 345566544455555544444444567888888888888
Q ss_pred ecCCCchhhhhHHHHHHhcCCCC-------ceecCHHHHHHHHHHhccCCC
Q psy15363 87 TLPGETLASRVAASQLATLGCPE-------LIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~-------~va~~~~~y~~~a~~l~~d~e 130 (130)
..+.+....|+. +.|.-.|+.+ -+.-.+++-+++|-++.++|+
T Consensus 108 G~~~~~i~~rV~-~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 108 GKPPREIRRRVS-EVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred CCCHHHHHHHHH-HHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 777776766664 4666667753 344678899999999998874
No 341
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=49.54 E-value=23 Score=25.70 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=8.6
Q ss_pred HHHHHHHHHHcCCCCCCEE
Q psy15363 25 EANIQATAQALGLDQHRIL 43 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~ 43 (130)
.+.+++.++++|++.++|+
T Consensus 209 ~~~v~~~l~~~G~~~~~i~ 227 (232)
T cd06212 209 IDAALPVLEMSGVPPDQIF 227 (232)
T ss_pred HHHHHHHHHHcCCCHHHee
Confidence 3344444444555444444
No 342
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=49.45 E-value=1e+02 Score=22.61 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=7.3
Q ss_pred HHHHHHhcCCcE
Q psy15363 74 TSMDVLWTGTPV 85 (130)
Q Consensus 74 ~~lEAla~G~Pv 85 (130)
..+.++..|.+.
T Consensus 228 ~~~~~~~~g~~~ 239 (280)
T cd06303 228 AELDAIQQGELD 239 (280)
T ss_pred HHHHHHHcCCce
Confidence 455666667663
No 343
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=49.35 E-value=75 Score=23.57 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=58.8
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC--HH--HH--HHhhccccEEEcCCCCCCch--HHHHH----Hh
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--KE--EH--VRRGQLADVCLDTPLCNGHT--TSMDV----LW 80 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~--~~--~~--~~~~~~~Dv~l~~~~~~~g~--~~lEA----la 80 (130)
.++++..+ ...++.+.+.+.+.|++-..+..--..+ .. ++ ....+..|+.+.||+..--. ..++. ..
T Consensus 124 ~~vl~~~~-~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~ 202 (248)
T COG1587 124 KRVLILRG-NGGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAPESGIEFL 202 (248)
T ss_pred CeEEEEcC-CCchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHHHHHHHHHccccchhHh
Confidence 35555554 3567889999999997644444433333 11 11 23345689998777542111 01111 12
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCcee---cCHHHHHHHHHHhc
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIA---RTHKEYQDIAIRLG 126 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va---~~~~~y~~~a~~l~ 126 (130)
-.+++++. +..++..++..|+...+. .+.+...+...+..
T Consensus 203 ~~~~v~~I------G~~Ta~~l~~~G~~~~~~~~~~~~~~l~~al~~~~ 245 (248)
T COG1587 203 ERKRVASI------GPRTAETLKELGITVDIAAEKPTLEALADALAKLL 245 (248)
T ss_pred hCceEEEe------cHHHHHHHHHcCCcceecccccchHHHHHHHHHHh
Confidence 23556653 457888899999886444 34455555444443
No 344
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=49.21 E-value=68 Score=25.96 Aligned_cols=63 Identities=22% Similarity=0.175 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCcEEecC
Q psy15363 24 GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVTLP 89 (130)
Q Consensus 24 ~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~PvV~~~ 89 (130)
+.+.+++++++.|+. -+++|.+..+.+++.+ +..|.+-+-..++ .|..+.+.| -.|+|.+..+
T Consensus 174 d~~elk~lL~~~Gl~-v~~~~~~~~~~~ei~~-~~~A~~niv~~~~-~g~~~a~~L~~~~giP~i~~~ 238 (427)
T cd01971 174 DLEEIKRVLEGIGLK-VNILFGPESNGEELRS-IPKAQFNLVLSPW-VGLEFAQHLEEKYGQPYIHSP 238 (427)
T ss_pred cHHHHHHHHHHCCCe-EEEEECCCCCHHHHHh-cccCcEEEEEcHh-hHHHHHHHHHHHhCCceEecC
Confidence 357899999999997 5677776666777754 5667766655554 234444555 4699998764
No 345
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=49.01 E-value=1.2e+02 Score=23.15 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=23.0
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.=|+.+-.-|......+.||.-+|+|||+.
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIai 186 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAI 186 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEE
Confidence 456665444555568899999999999987
No 346
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=48.82 E-value=69 Score=20.83 Aligned_cols=74 Identities=19% Similarity=0.144 Sum_probs=40.4
Q ss_pred EEEEeecCccc----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 14 ILWLLKFPAVG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 14 ~l~i~g~~~~~----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
++++++..|-. -+.++..+++.|++ =.|.=.+. .........+|++|-+.....-..-+....-++||+..+
T Consensus 5 kIllvC~~G~sTSll~~km~~~~~~~gi~-~~V~A~~~---~~~~~~~~~~DviLl~Pqi~~~~~~i~~~~~~~pV~~I~ 80 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSKMRAQAEKYEVP-VIIEAFPE---TLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVID 80 (106)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCC-EEEEEeec---chhhccccCCCEEEECHHHHHHHHHHHhhcCCCCEEEEC
Confidence 45566654543 34667777888886 34433332 222223457899985543322222333344458999886
Q ss_pred CC
Q psy15363 90 GE 91 (130)
Q Consensus 90 g~ 91 (130)
..
T Consensus 81 ~~ 82 (106)
T PRK10499 81 SL 82 (106)
T ss_pred hH
Confidence 54
No 347
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=48.54 E-value=52 Score=23.57 Aligned_cols=116 Identities=12% Similarity=0.034 Sum_probs=42.9
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEEEcCCCCCCchHHHHHHhc
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVCLDTPLCNGHTTSMDVLWT 81 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~l~~~~~~~g~~~lEAla~ 81 (130)
.++.++.|+.++++-.....+.+..++.... . ..+.+++.-........+.. -|+++-.=.+-=++-+.+|-..
T Consensus 42 ~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~---v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~ 117 (186)
T PF04413_consen 42 KRLRKQRPDLRILLTTTTPTGREMARKLLPD-R---VDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRR 117 (186)
T ss_dssp HHHTT---TS-EEEEES-CCHHHHHHGG-GG-G----SEEE---SSHHHHHHHHHHH--SEEEEES----HHHHHH----
T ss_pred HHHHHhCCCCeEEEEecCCchHHHHHHhCCC-C---eEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhc
Confidence 3455566777766655433344444333322 1 23444443222323333333 2555422111125678888899
Q ss_pred CCcEEecCCCch-----h----hhhHHHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 82 GTPVVTLPGETL-----A----SRVAASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 82 G~PvV~~~g~~~-----~----~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
|+|++..++..- . ......+++ .++.+.++|.++.. +..+|.
T Consensus 118 ~ip~~LvNarls~~s~~~~~~~~~~~r~~l~--~f~~i~aqs~~da~-r~~~lG 168 (186)
T PF04413_consen 118 GIPVVLVNARLSERSFRRYRRFPFLFRPLLS--RFDRILAQSEADAE-RFRKLG 168 (186)
T ss_dssp -S-EEEEEE--------------HHHHHHGG--G-SEEEESSHHHHH-HHHTTT
T ss_pred CCCEEEEeeeeccccchhhhhhHHHHHHHHH--hCCEEEECCHHHHH-HHHHcC
Confidence 999998876421 0 112223332 44556677766543 333433
No 348
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=48.42 E-value=1.2e+02 Score=25.41 Aligned_cols=112 Identities=16% Similarity=0.079 Sum_probs=62.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHH-HHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEH-VRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~-~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
|+-++.++|.+|.++..+-+++..+ ..+..+|.+-|. +-.++ ...++..=-++.--++-+..|+.|=+..|.|-.+.
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~-~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~ 443 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ-PIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASD 443 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE-EhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCH
Confidence 6778899998888999888876543 333357777653 21111 11122111122211222335788999999873221
Q ss_pred CCCchhhhhHHHHHHhcCCCCceec-----------------CHHHHHHHHHHhccCCC
Q psy15363 89 PGETLASRVAASQLATLGCPELIAR-----------------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~~g~~~~va~-----------------~~~~y~~~a~~l~~d~e 130 (130)
.+ -...++..|+.+++.. +...-+.+|..|++||+
T Consensus 444 ------~~-i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ 495 (574)
T PRK11160 444 ------EA-LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495 (574)
T ss_pred ------HH-HHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 11 2334555666666543 23455667777777763
No 349
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=48.38 E-value=1.4e+02 Score=24.01 Aligned_cols=73 Identities=21% Similarity=0.138 Sum_probs=45.8
Q ss_pred EEEEeecCc---ccHHHHHHHHHHcCCCCCCEEEe------------------cCCCHHHHHHhhccccEEEcCCCCCCc
Q psy15363 14 ILWLLKFPA---VGEANIQATAQALGLDQHRILFS------------------NVAAKEEHVRRGQLADVCLDTPLCNGH 72 (130)
Q Consensus 14 ~l~i~g~~~---~~~~~l~~~~~~~g~~~~rv~f~------------------g~~~~~~~~~~~~~~Dv~l~~~~~~~g 72 (130)
.+-++|+.. .+.+.+++++++.|+. -++.|. |..+.+++.+ +..|.+.+-..++ .+
T Consensus 157 ~VNlig~~~~~~~d~~el~~lL~~~Gl~-v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~-~~~A~lniv~~~~-~~ 233 (428)
T cd01965 157 KVNLLPGFPLTPGDVREIKRILEAFGLE-PIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRD-AGNAKATIALGEY-SG 233 (428)
T ss_pred eEEEECCCCCCccCHHHHHHHHHHcCCC-EEEecCcccccCCCCCCCccccCCCCCcHHHHHH-hccCcEEEEEChh-hh
Confidence 455555321 2468899999999996 444442 3456677754 5667777655552 33
Q ss_pred hHHHHHHh--cCCcEEecC
Q psy15363 73 TTSMDVLW--TGTPVVTLP 89 (130)
Q Consensus 73 ~~~lEAla--~G~PvV~~~ 89 (130)
..+.+.|. .|+|-+..+
T Consensus 234 ~~~a~~L~e~~GiP~~~~~ 252 (428)
T cd01965 234 RKAAKALEEKFGVPYILFP 252 (428)
T ss_pred HHHHHHHHHHHCCCeeecC
Confidence 44555554 899998665
No 350
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=48.33 E-value=69 Score=20.26 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=33.9
Q ss_pred EEEEeecCccc-----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC
Q psy15363 14 ILWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC 69 (130)
Q Consensus 14 ~l~i~g~~~~~-----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~ 69 (130)
+++++++.|.. ...+++.++++|++ +.+.. .+..++......+|+++.+.+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~---~~v~~-~~~~e~~~~~~~~D~iv~t~~~ 60 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP---VELIQ-CRVNEIETYMDGVHLICTTARV 60 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe---EEEEE-ecHHHHhhhcCCCCEEEECCcc
Confidence 34555544542 46788899999985 44544 4545565556788999877654
No 351
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=48.18 E-value=1.5e+02 Score=24.08 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=39.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH---HHHH------------HhhccccEEEcCCCCC-CchH
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK---EEHV------------RRGQLADVCLDTPLCN-GHTT 74 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~---~~~~------------~~~~~~Dv~l~~~~~~-~g~~ 74 (130)
.+-++.++|-++.+...+.++++++|. +|.....-+. +++. ..+..+|+++-+.... ..-.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~---~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~ 82 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGY---KVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPE 82 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCC---eEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHH
Confidence 344677777656677767888888884 3444432221 1111 1123577776444221 1223
Q ss_pred HHHHHhcCCcEEe
Q psy15363 75 SMDVLWTGTPVVT 87 (130)
Q Consensus 75 ~lEAla~G~PvV~ 87 (130)
+.+|...|+||++
T Consensus 83 ~~~a~~~~i~i~~ 95 (461)
T PRK00421 83 LVAARELGIPVVR 95 (461)
T ss_pred HHHHHHCCCcEEe
Confidence 5566666666664
No 352
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=48.07 E-value=27 Score=22.84 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=44.3
Q ss_pred HHHHhhCCCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCch-HHHHHHhc
Q psy15363 4 IFVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHT-TSMDVLWT 81 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~-~~lEAla~ 81 (130)
.+.|.+.|+..++.+..... ....+........-- ..+.+.. ...+++ ..+|+.+...+.+... ..-..+..
T Consensus 16 ~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~-~~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~ 89 (121)
T PF01118_consen 16 LRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGF-EDLSVED-ADPEEL----SDVDVVFLALPHGASKELAPKLLKA 89 (121)
T ss_dssp HHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTT-EEEBEEE-TSGHHH----TTESEEEE-SCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCccEEEeeeeccccCCeeehhccccccc-cceeEee-cchhHh----hcCCEEEecCchhHHHHHHHHHhhC
Confidence 45666688777666553222 112233322221111 3444444 333333 7899998776654333 34445699
Q ss_pred CCcEEecCCCc
Q psy15363 82 GTPVVTLPGET 92 (130)
Q Consensus 82 G~PvV~~~g~~ 92 (130)
|.+||-+.+..
T Consensus 90 g~~ViD~s~~~ 100 (121)
T PF01118_consen 90 GIKVIDLSGDF 100 (121)
T ss_dssp TSEEEESSSTT
T ss_pred CcEEEeCCHHH
Confidence 99999887764
No 353
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=48.01 E-value=13 Score=24.11 Aligned_cols=39 Identities=23% Similarity=0.114 Sum_probs=24.9
Q ss_pred HHHHHhhccccEEEcCCCC-CCchHHHHHHhcCCcEEecCC
Q psy15363 51 EEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 51 ~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G~PvV~~~g 90 (130)
+++.... ..||+++.-.. ....-..+++..|+.||+...
T Consensus 52 ~~~~~~~-~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk 91 (117)
T PF03447_consen 52 EELIDDP-DIDVVVECTSSEAVAEYYEKALERGKHVVTANK 91 (117)
T ss_dssp HHHHTHT-T-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-H
T ss_pred HHHhcCc-CCCEEEECCCchHHHHHHHHHHHCCCeEEEECH
Confidence 4554433 69999987332 233447899999999999754
No 354
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.00 E-value=60 Score=22.23 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEecC
Q psy15363 25 EANIQATAQALGLDQHRILFSNV 47 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~ 47 (130)
...+.+.+++.|+. +.+.+.|-
T Consensus 69 ~~~~~~~l~~~gl~-~~~vivGG 90 (134)
T TIGR01501 69 CKGLRQKCDEAGLE-GILLYVGG 90 (134)
T ss_pred HHHHHHHHHHCCCC-CCEEEecC
Confidence 44566667777775 55454444
No 355
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=47.78 E-value=1.1e+02 Score=22.31 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=62.0
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCC-CH-HHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEE
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVA-AK-EEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVV 86 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~-~~-~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV 86 (130)
|+-++.++|.+|.++..|-+.+... .....+|.+-|.- .. ..-...++..=-|+...+ .-...++.|-+..+..-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 6678889998888998888876633 2223578877642 11 011111121112232211 222456677666542101
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
..............++..+|+.++... ....-+.+|..|+.+|+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 106 RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 000111111223567788888754432 34566778888888774
No 356
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=47.66 E-value=1.2e+02 Score=22.68 Aligned_cols=66 Identities=12% Similarity=0.004 Sum_probs=36.7
Q ss_pred CCEEEecCCCH--HHHHHhhccc---cEEEcCCCCCCchH--H-HHHHhcCCcEEecCCCchhhhhHHHHHHhc
Q psy15363 40 HRILFSNVAAK--EEHVRRGQLA---DVCLDTPLCNGHTT--S-MDVLWTGTPVVTLPGETLASRVAASQLATL 105 (130)
Q Consensus 40 ~rv~f~g~~~~--~~~~~~~~~~---Dv~l~~~~~~~g~~--~-lEAla~G~PvV~~~g~~~~~r~~~~~l~~~ 105 (130)
..|...|..|- -++..++..- --++--.|-++-.+ . -+-+.+|+|-|+..|..=.+-+.+++++++
T Consensus 133 ~~IvvIGNAPTAL~~l~~li~~g~~~PalVIG~PVGFV~AaEsKe~L~~~~iP~It~~GrkGGS~vAaAivNAL 206 (214)
T PRK08286 133 PKLFVFGNAPTALFRLLEMVEHGQLQVDAVVGVPVGFVGAAESKEALTESDLPAIAALGRKGGSNVAAAIVNAI 206 (214)
T ss_pred CcEEEEeCcHHHHHHHHHHHHcCCCCCcEEEEeCCccccHHHHHHHHHhCCCCEEEEecCCCcHHHHHHHHHHH
Confidence 34888888873 3334433221 11111224443221 2 222568999999988776677777777653
No 357
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=47.51 E-value=1.2e+02 Score=23.19 Aligned_cols=120 Identities=10% Similarity=0.011 Sum_probs=61.7
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.|+-.+.++|.+|.++..+-+.+.-+ ..+..+|.+.|.-.......+.+..-++......-.+.++.|-+....-.-..
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~ 105 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM 105 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCC
Confidence 35667889998888898888876532 22335788877432111112222222222211222345666766532110000
Q ss_pred CCCchhhhhHHHHHHhcCCCCcee-------cCHHHHHHHHHHhccCCC
Q psy15363 89 PGETLASRVAASQLATLGCPELIA-------RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~~g~~~~va-------~~~~~y~~~a~~l~~d~e 130 (130)
+......+ ...++..+|+.++.. .....=+..|..|+.+|+
T Consensus 106 ~~~~~~~~-~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 106 KGQLLKQR-VEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred CHHHHHHH-HHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 11111222 356777888876543 234555677778877774
No 358
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=47.30 E-value=37 Score=26.28 Aligned_cols=72 Identities=11% Similarity=-0.063 Sum_probs=38.9
Q ss_pred CcEEEEeecCcc-c----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcC-CCCCCchHHHHHHhcCCcE
Q psy15363 12 NSILWLLKFPAV-G----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 12 ~a~l~i~g~~~~-~----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~-~~~~~g~~~lEAla~G~Pv 85 (130)
+..=+++|.-+. . -++++++++++|.. -.+.+.|.++.+.+. -+...|+|+.+ .|. +++.+.--.-+||
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk-~y~~~~~~i~~~kL~-nf~eid~fV~~aCPr---~~idd~~~f~kPv 284 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKAGKK-SYTLSVGEINPAKLA-NFPEIDAFVQIACPR---LSIDDSKDFYKPV 284 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHTT-E-EEEEEESS--GGGGT-TS---SEEEE-S-TH---HHHT--S--SS-E
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHcCCE-EEEEEECCCCHHHHh-cCcccCEEEEecCCC---cccCchhhcCCcc
Confidence 345566774221 1 35788899999985 678888999876654 45689999754 354 5677788889999
Q ss_pred Eec
Q psy15363 86 VTL 88 (130)
Q Consensus 86 V~~ 88 (130)
||.
T Consensus 285 ltP 287 (307)
T PF01866_consen 285 LTP 287 (307)
T ss_dssp E-H
T ss_pred cCH
Confidence 974
No 359
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=47.29 E-value=1.2e+02 Score=22.85 Aligned_cols=57 Identities=19% Similarity=0.122 Sum_probs=37.2
Q ss_pred HcCCCCCCEEE-ecCCCHHHHHHhhcc--ccEEEc--CCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 34 ALGLDQHRILF-SNVAAKEEHVRRGQL--ADVCLD--TPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 34 ~~g~~~~rv~f-~g~~~~~~~~~~~~~--~Dv~l~--~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
.+|+.+++++. .|+.+.+.-.++++. +|+++. +-..+.-..+--|..+|+|||...-
T Consensus 166 ~~g~~~~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~R 227 (249)
T PF02571_consen 166 ALGFPPKNIIAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKR 227 (249)
T ss_pred cCCCChhhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeC
Confidence 66877666554 588886655556654 787773 2112233457778999999998754
No 360
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=47.23 E-value=1.5e+02 Score=23.93 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=49.7
Q ss_pred EEEEeecCc-------ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCc
Q psy15363 14 ILWLLKFPA-------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTP 84 (130)
Q Consensus 14 ~l~i~g~~~-------~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~P 84 (130)
.+-++|... .+...+++++++.|+. -+.+|.+..+.+++.+ +..|.+-+-..++ .|..+.+.| -.|+|
T Consensus 163 ~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~-v~~~~~~~~~~~ei~~-~~~A~lniv~~~~-~g~~~a~~Lee~~GiP 239 (426)
T cd01972 163 SVNIIGLWGGPERTEQEDVDEFKRLLNELGLR-VNAIIAGGCSVEELER-ASEAAANVTLCLD-LGYYLGAALEQRFGVP 239 (426)
T ss_pred CEEEEccCCCccccccccHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHh-cccCCEEEEEChh-HHHHHHHHHHHHhCCC
Confidence 456677432 2247899999999997 6677777778888865 5566666644443 345666666 47999
Q ss_pred EEecC
Q psy15363 85 VVTLP 89 (130)
Q Consensus 85 vV~~~ 89 (130)
.+..+
T Consensus 240 ~~~~~ 244 (426)
T cd01972 240 EIKAP 244 (426)
T ss_pred eEecC
Confidence 99653
No 361
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=47.20 E-value=21 Score=25.63 Aligned_cols=9 Identities=11% Similarity=-0.156 Sum_probs=4.0
Q ss_pred hhCCCcEEE
Q psy15363 8 KAVPNSILW 16 (130)
Q Consensus 8 ~~~P~a~l~ 16 (130)
++.|+.++.
T Consensus 152 ~~~~~~~~~ 160 (224)
T cd06187 152 ARHPWLRVV 160 (224)
T ss_pred HhCCCeEEE
Confidence 344554443
No 362
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=47.00 E-value=1.4e+02 Score=24.12 Aligned_cols=74 Identities=11% Similarity=-0.035 Sum_probs=49.2
Q ss_pred cEEEEeecCc--ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCcEEec
Q psy15363 13 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~~--~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~PvV~~ 88 (130)
-.+-++|+.. .+...+++++++.|+. -...|.+..+.+++.. +..|.+-+...+... ..+.+.| -.|+|-+..
T Consensus 173 ~~VNiiG~~~~~~d~~el~~lL~~~Gi~-v~~~~~~~~t~eei~~-~~~A~lniv~~~~~~-~~~a~~Le~~fGiP~~~~ 249 (421)
T cd01976 173 YDVNIIGDYNIGGDAWASRILLEEMGLR-VVAQWSGDGTLNEMEN-AHKAKLNLIHCYRSM-NYIARMMEEKYGIPWMEY 249 (421)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHh-cccCCEEEEECcHHH-HHHHHHHHHHhCCcEEec
Confidence 4566777321 2446799999999997 5577888888888865 556666664444432 2445555 379999876
Q ss_pred C
Q psy15363 89 P 89 (130)
Q Consensus 89 ~ 89 (130)
.
T Consensus 250 ~ 250 (421)
T cd01976 250 N 250 (421)
T ss_pred c
Confidence 4
No 363
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=46.77 E-value=57 Score=25.77 Aligned_cols=40 Identities=20% Similarity=0.123 Sum_probs=30.4
Q ss_pred HHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 5 FVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
+.+++.|...++++|+ ++.+++.+.++|++.+++.+...-
T Consensus 24 ~a~~~~~~~~~iLvG~----~~~I~~~l~~~~~~~~~~~Iv~~~ 63 (334)
T PRK05331 24 QALKEHPDLEIILVGD----EEKIKPLLAKKPDLKERIEIVHAS 63 (334)
T ss_pred HHHhcCCCeEEEEEeC----HHHHHHHHHhcCCCcCCcEEEeCC
Confidence 4456667899999995 367888888889877788887543
No 364
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=46.54 E-value=42 Score=22.32 Aligned_cols=43 Identities=7% Similarity=0.043 Sum_probs=27.8
Q ss_pred HHHHHhhCCCcEEEEeecCcc---cHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
|+.++...|+..++++|.+.. -.+.+++.++++|+. +.+...-
T Consensus 45 l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~---vevm~T~ 90 (114)
T cd05125 45 LSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIA---VEVVDTR 90 (114)
T ss_pred HHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCE---EEEECHH
Confidence 556666677778888886432 235677888888873 5555433
No 365
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=46.54 E-value=2e+02 Score=25.00 Aligned_cols=109 Identities=10% Similarity=0.022 Sum_probs=62.8
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC-CH------HHHHHhh-ccccEEEcCCCCCCchHHHHH---
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-AK------EEHVRRG-QLADVCLDTPLCNGHTTSMDV--- 78 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~-~~------~~~~~~~-~~~Dv~l~~~~~~~g~~~lEA--- 78 (130)
.++-+++++.+ ...++.+.+.+++.|..-+.+..--++ +. ..+..++ ...|+.+.+|+.+--. .++.
T Consensus 137 ~~g~rVLi~rG-~~gr~~L~~~L~~~Ga~V~~v~vY~~~~~~~~~~~~~~~~~~l~~~idav~fTS~s~v~~-f~~la~~ 214 (656)
T PRK06975 137 LAGKRVLIVRG-DGGREWLAERLREAGAEVELVEAYRRVVPEPSIGAWERVHALLSGAPHAWLLTSSEAVRN-LDELARA 214 (656)
T ss_pred CCCCEEEEEcC-CCCcHHHHHHHHHCCCEEEEEeEEEeeCCCcchhHHHHHHHHHhCCCcEEEECCHHHHHH-HHHHHHh
Confidence 45666766664 356778999999999876666554432 21 1222223 2378888777643111 1111
Q ss_pred --------HhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhc
Q psy15363 79 --------LWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLG 126 (130)
Q Consensus 79 --------la~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~ 126 (130)
....+++|+.. ..++..++..|+...+. .+.++.+..+.+..
T Consensus 215 ~l~~~~~~~l~~~~ivaIg------prtA~~a~~~G~~~i~~a~~~~e~ll~ai~~~~ 266 (656)
T PRK06975 215 HLNPAEIDALKHAPLVAPH------ARIAEQARALGFDRITLTGAGDERIVRAFLTWA 266 (656)
T ss_pred hcCHHHHHHHhCCeEEEeC------HHHHHHHHHcCCCeeecCCCChHHHHHHHHHHh
Confidence 12467777743 34667788889887542 35566666555544
No 366
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=46.47 E-value=75 Score=24.61 Aligned_cols=69 Identities=17% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHhhccccEEEcCCCCCCchHHHHHHhcCCc-EEecCCCchhhhhHHHHHHhcCCC----CceecCHHHHHHHHH
Q psy15363 54 VRRGQLADVCLDTPLCNGHTTSMDVLWTGTP-VVTLPGETLASRVAASQLATLGCP----ELIARTHKEYQDIAI 123 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~P-vV~~~g~~~~~r~~~~~l~~~g~~----~~va~~~~~y~~~a~ 123 (130)
.+-+..-.=+||.|.|+||.++. |+..|.- |++.+....+-.++..=+...|++ .++..|.=+|.+.+.
T Consensus 118 v~~~~~gkrvLnlFsYTGgfsv~-Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 118 VRKYAKGKRVLNLFSYTGGFSVA-AAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp HHHHCTTCEEEEET-TTTHHHHH-HHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred HHHHcCCCceEEecCCCCHHHHH-HHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence 33444556789999999998774 7788865 777766544333333333333554 478888888877643
No 367
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4. This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The member from Thermus thermophilus HB8 is known to act as uracil-DNA glycosylase, an enzyme of DNA base excision repair. Its appearance as a domain of phage DNA polymerases could be consistent with uracil-DNA glycosylase activity.
Probab=46.45 E-value=46 Score=23.46 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCCcEEEEeecCcc-------------cHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 10 VPNSILWLLKFPAV-------------GEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 10 ~P~a~l~i~g~~~~-------------~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.++++++++|..+. ..+.|.+.++..|++.+.|.++.-+
T Consensus 19 ~~~A~im~VgeaPg~~e~~~g~pf~g~sG~~L~~~l~~~gl~~~~vy~t~~~ 70 (173)
T TIGR00758 19 NPDANIMFVGEAPGREEDRKGRPFVGRAGKLLDEMLAAIGLSRENVYITNVV 70 (173)
T ss_pred CCCCCEEEEeCCCCccccccCCCCcChHHHHHHHHHHHcCCCcccEEEeccc
Confidence 46899999995321 1246788888999988888776543
No 368
>PRK10586 putative oxidoreductase; Provisional
Probab=46.42 E-value=1.5e+02 Score=23.58 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=43.3
Q ss_pred HHhhCCCcEEEEeecCccc---HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc----cccEEEcCCCCCCchHHHH-
Q psy15363 6 VLKAVPNSILWLLKFPAVG---EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ----LADVCLDTPLCNGHTTSMD- 77 (130)
Q Consensus 6 il~~~P~a~l~i~g~~~~~---~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~----~~Dv~l~~~~~~~g~~~lE- 77 (130)
+++++--.+.++++++... .+.+.+.+++.|+ +.+.|.|..+.++..++.+ .+|+.+ ..+||. +++
T Consensus 28 ~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~--~~~~~~g~~~~~~v~~l~~~~~~~~d~ii---avGGGs-~iD~ 101 (362)
T PRK10586 28 FFTDEQLSRAVWIYGERAIAAAQPYLPPAFELPGA--KHILFRGHCSESDVAQLAAASGDDRQVVI---GVGGGA-LLDT 101 (362)
T ss_pred HHHhcCCCeEEEEEChHHHHHHHHHHHHHHHHcCC--eEEEeCCCCCHHHHHHHHHHhccCCCEEE---EecCcH-HHHH
Confidence 3444432455666643322 2445666777776 4577888888766655442 246554 234443 333
Q ss_pred --H--HhcCCcEEecCC
Q psy15363 78 --V--LWTGTPVVTLPG 90 (130)
Q Consensus 78 --A--la~G~PvV~~~g 90 (130)
+ ...++|+|+.+.
T Consensus 102 aK~~a~~~~~p~i~vPT 118 (362)
T PRK10586 102 AKALARRLGLPFVAIPT 118 (362)
T ss_pred HHHHHhhcCCCEEEEeC
Confidence 2 234799987754
No 369
>PRK06091 membrane protein FdrA; Validated
Probab=46.29 E-value=1.9e+02 Score=24.77 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=39.0
Q ss_pred ChHHHHHhhCCCcEEEEeecCccc-HHHHHHHHHHcCCCCCCEEEecCCCH---HHHHHhhccccEEE
Q psy15363 1 MSDIFVLKAVPNSILWLLKFPAVG-EANIQATAQALGLDQHRILFSNVAAK---EEHVRRGQLADVCL 64 (130)
Q Consensus 1 ~~w~~il~~~P~a~l~i~g~~~~~-~~~l~~~~~~~g~~~~rv~f~g~~~~---~~~~~~~~~~Dv~l 64 (130)
+.|...++..|++-+.++.-++.. .+.+++ +.+.|. .-++|...++. .++..+-+...+.+
T Consensus 106 ~t~~~a~~~lpe~DLAvIsVPa~~v~~al~e-a~~~G~--~viI~S~gfg~~~E~~L~e~Ar~~Glrv 170 (555)
T PRK06091 106 RRWDSACQKLPDANLALISVAGEYAAELAEQ-ALDRNL--NVMMFSDNVTLEDEIRLKTRAREKGLLV 170 (555)
T ss_pred ccHHHHHhcCCCCCEEEEecCHHHHHHHHHH-HHHcCC--eEEEEcCCCCHHHHHHHHHHHHHcCCEE
Confidence 478999999998888888765433 234444 445673 46777776763 34555555666654
No 370
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=46.22 E-value=20 Score=26.31 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=14.7
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEec
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSN 46 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g 46 (130)
..+++.|. ......+++.+++.|+++++|++-.
T Consensus 210 ~~v~icGp-~~m~~~v~~~l~~~G~~~~~i~~e~ 242 (247)
T cd06184 210 ADFYLCGP-VPFMQAVREGLKALGVPAERIHYEV 242 (247)
T ss_pred CEEEEECC-HHHHHHHHHHHHHcCCCHHHeeeec
Confidence 34444442 2333444555555555544554433
No 371
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=46.17 E-value=1e+02 Score=22.31 Aligned_cols=62 Identities=18% Similarity=0.086 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCCCCEEEecCCCHHHHHHhh--ccccEEE-cCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 27 NIQATAQALGLDQHRILFSNVAAKEEHVRRG--QLADVCL-DTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 27 ~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~--~~~Dv~l-~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
.+++.++++|.+ =.+...+.-....+...+ +.+|-.+ .+.... ...+-++...|+|||+...
T Consensus 31 gi~~~~~~~g~~-~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 31 GIADALAERGYD-LLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ-DPLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHcCCE-EEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhCCCCEEEECC
Confidence 466777777764 122222222223333333 3578654 332211 2334556678999998743
No 372
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=45.89 E-value=1.6e+02 Score=24.29 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=64.0
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
|+-++.++|.+|.++..+-+++..+ ..+..+|.+-| .+-.++..-++..=-++.--|+=+..|+.|=+.+|.|-++-.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g-~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e 438 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG-VSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDE 438 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHH
Confidence 6778899998888999988877643 33334666655 442233333332222333334445568999999998755321
Q ss_pred CCchhhhhHHHHHHhcCCCCcee------------------cCHHHHHHHHHHhccCCC
Q psy15363 90 GETLASRVAASQLATLGCPELIA------------------RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 90 g~~~~~r~~~~~l~~~g~~~~va------------------~~~~~y~~~a~~l~~d~e 130 (130)
++ ...++..|+.+++. .....-+++|-.|++||+
T Consensus 439 ------~i-~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 439 ------EL-WAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred ------HH-HHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 11 12233334433332 234566777888888764
No 373
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=45.74 E-value=1.2e+02 Score=23.18 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=39.0
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC-CCHHHHHHhhccccEEEcC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-AAKEEHVRRGQLADVCLDT 66 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~-~~~~~~~~~~~~~Dv~l~~ 66 (130)
-..+.++.++.++++.++ +.+.+++.+... . +.+.|.+. -+.+|+. +++.||.++-+
T Consensus 197 i~~i~~~~~~~~f~ifSD---D~~w~k~~l~~~--~-~~~~~~~~~~~~~Dl~-lms~C~~~Iis 254 (298)
T PF01531_consen 197 IEYIREKVKNPKFFIFSD---DIEWCKENLKFS--N-GDVYFSGNNSPYEDLY-LMSQCKHFIIS 254 (298)
T ss_pred HHHHHHhCCCCEEEEEcC---CHHHHHHHHhhc--C-CcEEEECCCCHHHHHH-HHHhCCcEEEC
Confidence 456777889999999985 345666655532 2 56778776 4456664 68999999744
No 374
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=45.67 E-value=97 Score=22.32 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=49.0
Q ss_pred cEEEEeecCcc------cHHHHHHHHHHcCCC---C--CCEEEecCCC-------HHHHHHhhccccEEE---cCCC-CC
Q psy15363 13 SILWLLKFPAV------GEANIQATAQALGLD---Q--HRILFSNVAA-------KEEHVRRGQLADVCL---DTPL-CN 70 (130)
Q Consensus 13 a~l~i~g~~~~------~~~~l~~~~~~~g~~---~--~rv~f~g~~~-------~~~~~~~~~~~Dv~l---~~~~-~~ 70 (130)
-++++.| +-- ..+.+++++.+.|.. | .++-+....| ++.-...+..||+.| +++. ..
T Consensus 5 ~~IYLAG-P~F~~~~i~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~~ 83 (172)
T COG3613 5 KKIYLAG-PVFRPDEIELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPDP 83 (172)
T ss_pred ceEEEec-CcCCHHHHHHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCCC
Confidence 4677777 321 145677788888753 1 2333333333 122246677899985 5664 22
Q ss_pred CchHHHH---HHhcCCcEEecCCC--chhhhhHH
Q psy15363 71 GHTTSMD---VLWTGTPVVTLPGE--TLASRVAA 99 (130)
Q Consensus 71 ~g~~~lE---Ala~G~PvV~~~g~--~~~~r~~~ 99 (130)
-+-|+.| |.+-|+||+.+..+ +...|.-+
T Consensus 84 DsGTa~E~GYa~AlgKPv~~~~~d~~~~~~r~~~ 117 (172)
T COG3613 84 DSGTAFELGYAIALGKPVYAYRKDAANYASRLNA 117 (172)
T ss_pred CCcchHHHHHHHHcCCceEEEeecccchhhHHHH
Confidence 2233444 78999999998654 34445443
No 375
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=45.61 E-value=60 Score=18.80 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
..++++.+.+.++. ..+ ...+..++ ......|+++.+.+.. ....++|++...
T Consensus 17 ~~~l~~~~~~~~~~-~~~---~~~~~~~~-~~~~~~dliitt~~~~-------~~~~~~p~~~i~ 69 (84)
T cd00133 17 AEKLEKAAKELGIE-VKV---EAQGLSEV-IDLADADLIISTVPLA-------ARFLGKPVIVVS 69 (84)
T ss_pred HHHHHHHHHHCCCe-EEE---EEcccchh-hhcCCccEEEECCccc-------cccCCCcEEEEc
Confidence 46788888887764 222 22222332 3456889999887643 345678888654
No 376
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=45.60 E-value=73 Score=20.41 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=57.3
Q ss_pred HHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC-HHHHHHhhcc--ccEEEcCCCCC-CchHHHHHHh
Q psy15363 5 FVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA-KEEHVRRGQL--ADVCLDTPLCN-GHTTSMDVLW 80 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~-~~~~~~~~~~--~Dv~l~~~~~~-~g~~~lEAla 80 (130)
++.+..- .+++.+..+ +.-.++++++|. +.+......+ .+++..+... +|+++|+.... .-...++++.
T Consensus 8 q~ak~~G-~~vi~~~~~----~~k~~~~~~~Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~ 80 (130)
T PF00107_consen 8 QLAKAMG-AKVIATDRS----EEKLELAKELGA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLR 80 (130)
T ss_dssp HHHHHTT-SEEEEEESS----HHHHHHHHHTTE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEE
T ss_pred HHHHHcC-CEEEEEECC----HHHHHHHHhhcc--cccccccccccccccccccccccceEEEEecCcHHHHHHHHHHhc
Confidence 3444444 777666642 223567889994 5666655554 4556666654 99999887632 1123444444
Q ss_pred cCCcEEec--CC-CchhhhhHHHHHHhcCCCCceecCHHHHHHHHHH
Q psy15363 81 TGTPVVTL--PG-ETLASRVAASQLATLGCPELIARTHKEYQDIAIR 124 (130)
Q Consensus 81 ~G~PvV~~--~g-~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~ 124 (130)
-|=-++.. .+ ....-....-+.+..-+-+....+.++|.+....
T Consensus 81 ~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 127 (130)
T PF00107_consen 81 PGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQEALQL 127 (130)
T ss_dssp EEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHHH
T ss_pred cCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHHH
Confidence 44333333 32 1121222333344434434444456666554433
No 377
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=45.29 E-value=1.1e+02 Score=21.71 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=62.5
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEE-EcCC-CCCCchHHHHHHhcCCcEEe
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVC-LDTP-LCNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~-~~~~g~~~lEAla~G~PvV~ 87 (130)
|+-++.++|.+|.++..|-+.+... .....+|.|-|.--.. ....++ ..+. +... .+....++.|-+..+.+.-
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~-~~~~~~-~~~~~~~~~~~~~~~~tv~e~l~~~~~~~- 102 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRR-QRDEYH-QDLLYLGHQPGIKTELTALENLRFYQRLH- 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc-chHHhh-hheEEeCCccccCcCCcHHHHHHHHHHhc-
Confidence 5678889998888998888876633 3333678887642111 001111 1232 3221 1223357888777665421
Q ss_pred cCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 88 LPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 88 ~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
+. ........+++.+|+.++... ....-+.+|..|+.+|+
T Consensus 103 --~~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 103 --GP-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred --Cc-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 11 112234567788888754332 23556777777777764
No 378
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=45.19 E-value=97 Score=21.09 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=41.2
Q ss_pred HHHhhCCC-cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh----------------------cccc
Q psy15363 5 FVLKAVPN-SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG----------------------QLAD 61 (130)
Q Consensus 5 ~il~~~P~-a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~----------------------~~~D 61 (130)
.|.+++|+ .+++-+.- +..-+.|.++++++. |+.|........+++...+ ..+|
T Consensus 16 dVi~~~~d~f~v~~Lsa-~~n~~~L~~q~~~f~--p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~~~~~~~~~D 92 (129)
T PF02670_consen 16 DVIRKHPDKFEVVALSA-GSNIEKLAEQAREFK--PKYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLEELAEEPEVD 92 (129)
T ss_dssp HHHHHCTTTEEEEEEEE-SSTHHHHHHHHHHHT---SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHTHTT-S
T ss_pred HHHHhCCCceEEEEEEc-CCCHHHHHHHHHHhC--CCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHHHHhcCCCCC
Confidence 46677774 55544443 345567777777775 3455554443333333322 2466
Q ss_pred EEEcCCC-CCCchHHHHHHhcCCcEEe
Q psy15363 62 VCLDTPL-CNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 62 v~l~~~~-~~~g~~~lEAla~G~PvV~ 87 (130)
+.+.... +.|=..+++|+-.|+=+-.
T Consensus 93 ~vv~Ai~G~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 93 IVVNAIVGFAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp EEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred EEEEeCcccchHHHHHHHHHCCCeEEE
Confidence 6665443 3333456777777755443
No 379
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=45.17 E-value=1.1e+02 Score=21.68 Aligned_cols=120 Identities=12% Similarity=0.061 Sum_probs=63.9
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCC-H--HHHHHhhccccEEEcCCCCC-CchHHHHHHhcCCc
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAA-K--EEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTGTP 84 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~-~--~~~~~~~~~~Dv~l~~~~~~-~g~~~lEAla~G~P 84 (130)
.|+-.+.++|.+|.++..+-+.+.-+ .....+|.+-|.-. . .... .++..-.|+...+.- ...++.|-+..+..
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 102 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNIN-ELRQKVGMVFQQFNLFPHLTVLENITLAPI 102 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHH-HHHhcceEEecccccCCCCcHHHHHHhHHH
Confidence 36778889998888998888876632 22336788877421 1 1111 122222233332222 23567777766532
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCcee-------cCHHHHHHHHHHhccCCC
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIA-------RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va-------~~~~~y~~~a~~l~~d~e 130 (130)
...-....-.......++..+|++++.. .....-+.+|..|+.+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 155 (213)
T cd03262 103 KVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK 155 (213)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCC
Confidence 1110000011123456677778865433 234566777888887764
No 380
>PRK08328 hypothetical protein; Provisional
Probab=45.04 E-value=82 Score=23.26 Aligned_cols=51 Identities=18% Similarity=0.009 Sum_probs=32.5
Q ss_pred cCCCHHHHHHhhccccEEEcCCCCCCchHHHH--HHhcCCcEEecCCCchhhh
Q psy15363 46 NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMD--VLWTGTPVVTLPGETLASR 96 (130)
Q Consensus 46 g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lE--Ala~G~PvV~~~g~~~~~r 96 (130)
+..+.+....++..+|+.+|.......-..+. +...|+|+|......+.++
T Consensus 105 ~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~ 157 (231)
T PRK08328 105 GRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQ 157 (231)
T ss_pred ccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEE
Confidence 44555556667889999998754322233455 7789999997654444333
No 381
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=44.94 E-value=1.3e+02 Score=22.59 Aligned_cols=85 Identities=9% Similarity=-0.009 Sum_probs=48.5
Q ss_pred HHHHHhhC--CCcEEEEeecC-ccc---HHHHHHHHHHcCCCCCCEEEecCC-----CHHHHHHhhccccEEEcCC----
Q psy15363 3 DIFVLKAV--PNSILWLLKFP-AVG---EANIQATAQALGLDQHRILFSNVA-----AKEEHVRRGQLADVCLDTP---- 67 (130)
Q Consensus 3 w~~il~~~--P~a~l~i~g~~-~~~---~~~l~~~~~~~g~~~~rv~f~g~~-----~~~~~~~~~~~~Dv~l~~~---- 67 (130)
|.++++.. +++++.++..- ++. -+..++.++++|+. .|..+.-. ..++..+.+..+|....+-
T Consensus 17 ~~~~~~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~--~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~ 94 (250)
T TIGR02069 17 LREFVSRAGGEDAIIVIITSASEEPREVGERYITIFSRLGVK--EVKILDVREREDASDENAIALLSNATGIFFTGGDQL 94 (250)
T ss_pred HHHHHHHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCc--eeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHH
Confidence 44444433 56788888742 122 23556677889984 34433322 2345677889999987322
Q ss_pred CC-----CCc--hHHHHHHhcCCcEEecC
Q psy15363 68 LC-----NGH--TTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 68 ~~-----~~g--~~~lEAla~G~PvV~~~ 89 (130)
.. ..+ ..+-++...|+|++...
T Consensus 95 ~l~~~l~~t~l~~~l~~~~~~G~vi~G~S 123 (250)
T TIGR02069 95 RITSLLGDTPLLDRLRKRVHEGIILGGTS 123 (250)
T ss_pred HHHHHHcCCcHHHHHHHHHHcCCeEEEcc
Confidence 10 011 12446777899988663
No 382
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=44.52 E-value=1.7e+02 Score=23.78 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=34.9
Q ss_pred cCCCHHHHHHhhccccEEEcCCCCCCchHHH-HHHhcCCcEEecCC
Q psy15363 46 NVAAKEEHVRRGQLADVCLDTPLCNGHTTSM-DVLWTGTPVVTLPG 90 (130)
Q Consensus 46 g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~l-EAla~G~PvV~~~g 90 (130)
.-...+.+.++++..|+.++..|.....+++ -|+..|+++|.+..
T Consensus 55 D~~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 55 DAADVDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred cccChHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEccc
Confidence 4344567778888899999888777667777 67889999998743
No 383
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=43.85 E-value=1.3e+02 Score=22.26 Aligned_cols=65 Identities=18% Similarity=0.095 Sum_probs=36.7
Q ss_pred CCEEEecCCCH--HHHHHhhcc----ccEEEcCCCCCCch--HHHHHHhc---CCcEEecCCCchhhhhHHHHHHhc
Q psy15363 40 HRILFSNVAAK--EEHVRRGQL----ADVCLDTPLCNGHT--TSMDVLWT---GTPVVTLPGETLASRVAASQLATL 105 (130)
Q Consensus 40 ~rv~f~g~~~~--~~~~~~~~~----~Dv~l~~~~~~~g~--~~lEAla~---G~PvV~~~g~~~~~r~~~~~l~~~ 105 (130)
+.|+..|..|- -++..++.. -.+.+ -.|-++.. -.=|.+.. |+|-|+..|..=.+-+.+++++++
T Consensus 128 ~~I~vIGNAPTAL~~l~~li~~g~~~PalVI-G~PVGFV~a~ESKe~L~~~~~~vP~I~~~GrkGGS~vAaAivNAL 203 (208)
T PRK08285 128 GSVVAIGNAPTALFRLLEMLDAGAPRPAAIL-GFPVGFVGAAESKDALAADSRGVPYLIVRGRRGGSAMAAAAVNAL 203 (208)
T ss_pred CCEEEEeCCHHHHHHHHHHHHcCCCCCCEEE-EeCCccccHHHHHHHHHhccCCCCEEEEecCCCcHHHHHHHHHHH
Confidence 55888888773 233333332 11222 22434322 23344433 999999988877777777777753
No 384
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=43.80 E-value=1.4e+02 Score=22.41 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=42.3
Q ss_pred CCcEEEEeecCc---c---cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchH----------
Q psy15363 11 PNSILWLLKFPA---V---GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTT---------- 74 (130)
Q Consensus 11 P~a~l~i~g~~~---~---~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~---------- 74 (130)
.+.+++++..-. + +-+..++.++++|+. +..+... ++..+.+..+|+.. .+||++
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~---v~~l~~~--~d~~~~l~~ad~I~----v~GGnt~~l~~~l~~~ 100 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE---VTGIHRV--ADPVAAIENAEAIF----VGGGNTFQLLKQLYER 100 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE---EEEeccc--hhhHHHHhcCCEEE----ECCccHHHHHHHHHHC
Confidence 455666766421 1 134566778888875 3333222 44567788999876 333322
Q ss_pred -----HHHHHhcCCcEEecC
Q psy15363 75 -----SMDVLWTGTPVVTLP 89 (130)
Q Consensus 75 -----~lEAla~G~PvV~~~ 89 (130)
+-|+...|+|++...
T Consensus 101 gl~~~l~~~~~~G~~~~G~S 120 (233)
T PRK05282 101 GLLAPIREAVKNGTPYIGWS 120 (233)
T ss_pred CcHHHHHHHHHCCCEEEEEC
Confidence 457888999998663
No 385
>PRK13699 putative methylase; Provisional
Probab=43.57 E-value=60 Score=24.00 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=26.0
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecCCC
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
.-|++||||. |+|+|..-|..+|.-.+...-.
T Consensus 163 ~g~~vlDpf~-Gsgtt~~aa~~~~r~~~g~e~~ 194 (227)
T PRK13699 163 PNAIVLDPFA-GSGSTCVAALQSGRRYIGIELL 194 (227)
T ss_pred CCCEEEeCCC-CCCHHHHHHHHcCCCEEEEecC
Confidence 4699999984 4588999999999999977543
No 386
>PRK08051 fre FMN reductase; Validated
Probab=43.51 E-value=19 Score=26.32 Aligned_cols=13 Identities=15% Similarity=-0.049 Sum_probs=5.7
Q ss_pred HHHhhCCCcEEEE
Q psy15363 5 FVLKAVPNSILWL 17 (130)
Q Consensus 5 ~il~~~P~a~l~i 17 (130)
++.++.|+.++..
T Consensus 153 ~l~~~~~~~~~~~ 165 (232)
T PRK08051 153 ALALKHPNLHFVP 165 (232)
T ss_pred HHHHHCCCcEEEE
Confidence 3344445544443
No 387
>PRK05805 phosphate butyryltransferase; Validated
Probab=43.10 E-value=72 Score=24.75 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=24.5
Q ss_pred HhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 7 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 7 l~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
..+.+..+++++|. ++.+++.++++|++.+++.+...-
T Consensus 37 ~~~~~~~~~iLVGd----~~~I~~~l~~~~l~~~~ieIi~a~ 74 (301)
T PRK05805 37 AKELGIANAILVGD----KEKIKEIAKEIDMDLEDFEIIDEK 74 (301)
T ss_pred HHHCCCceEEEECC----HHHHHHHHHHcCCCccCcEEECCC
Confidence 34556677777774 246777777777655677766554
No 388
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.03 E-value=88 Score=21.15 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCCCCEEEec-CCCHHHHHH
Q psy15363 27 NIQATAQALGLDQHRILFSN-VAAKEEHVR 55 (130)
Q Consensus 27 ~l~~~~~~~g~~~~rv~f~g-~~~~~~~~~ 55 (130)
.+.+.+++.|.. +-.++.| ..+.++...
T Consensus 72 ~~~~~L~~~g~~-~i~vivGG~~~~~~~~~ 100 (132)
T TIGR00640 72 ALRKELDKLGRP-DILVVVGGVIPPQDFDE 100 (132)
T ss_pred HHHHHHHhcCCC-CCEEEEeCCCChHhHHH
Confidence 444555666764 4445554 345444443
No 389
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=42.92 E-value=29 Score=25.02 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=15.1
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEE
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILF 44 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f 44 (130)
.+++.| +......+++.+++.|++.++|++
T Consensus 199 ~v~icG-p~~m~~~~~~~l~~~gv~~~~i~~ 228 (231)
T cd06215 199 TVFVCG-PAGFMKAVKSLLAELGFPMSRFHQ 228 (231)
T ss_pred eEEEEC-CHHHHHHHHHHHHHcCCCHHHeee
Confidence 444444 233445555555666665555544
No 390
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=42.86 E-value=1.5e+02 Score=22.69 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=59.9
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC---------------HHHHHHhhccccEEEcCCCCCC-chH
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---------------KEEHVRRGQLADVCLDTPLCNG-HTT 74 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~---------------~~~~~~~~~~~Dv~l~~~~~~~-g~~ 74 (130)
.+.++.++|.+ ..-..+.+.++.+|. +|....+.+ .+++...+..+|+++.+.|... ...
T Consensus 150 ~gk~v~IiG~G-~iG~avA~~L~~~G~---~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~ 225 (287)
T TIGR02853 150 HGSNVMVLGFG-RTGMTIARTFSALGA---RVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTAD 225 (287)
T ss_pred CCCEEEEEcCh-HHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHH
Confidence 36788999964 444456666677774 566655433 2245566788999998877542 334
Q ss_pred HHHHHhcCCcEEec---CCCc-h--hhhhHHHHHHhcCCCCcee-cCHHHHHHHHH
Q psy15363 75 SMDVLWTGTPVVTL---PGET-L--ASRVAASQLATLGCPELIA-RTHKEYQDIAI 123 (130)
Q Consensus 75 ~lEAla~G~PvV~~---~g~~-~--~~r~~~~~l~~~g~~~~va-~~~~~y~~~a~ 123 (130)
.++.|..|.=+|=+ ++.. + +.+.+...+-..|+|+.++ .+..++++.++
T Consensus 226 ~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~~~~ 281 (287)
T TIGR02853 226 VLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVL 281 (287)
T ss_pred HHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHHHHH
Confidence 55566555434422 2322 1 1112211222347788775 35555555443
No 391
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=42.64 E-value=75 Score=25.27 Aligned_cols=85 Identities=14% Similarity=0.159 Sum_probs=50.2
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC-----------HHHHHHhhccccEEEcCCCCCCc
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA-----------KEEHVRRGQLADVCLDTPLCNGH 72 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~-----------~~~~~~~~~~~Dv~l~~~~~~~g 72 (130)
.+|.+..|+-.| |+|++..-.+..+..++..|+. -++.-|.-- +++|+..+..+-+++- +.|..+
T Consensus 69 ~eI~~lnpd~VL-IIGGp~AVs~~yE~~Lks~Git--V~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv-~GwDy~ 144 (337)
T COG2247 69 DEIIELNPDLVL-IIGGPIAVSPNYENALKSLGIT--VKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVV-YGWDYA 144 (337)
T ss_pred HHHHhhCCceEE-EECCCCcCChhHHHHHHhCCcE--EEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEE-eccccH
Confidence 478888998776 5564433456677788888984 333333221 1223334444455542 223222
Q ss_pred hHHHHHHhcC-CcEEecCCCc
Q psy15363 73 TTSMDVLWTG-TPVVTLPGET 92 (130)
Q Consensus 73 ~~~lEAla~G-~PvV~~~g~~ 92 (130)
-.++|+|--| +||+...+..
T Consensus 145 ~~~~e~~k~~~~p~~~~n~~~ 165 (337)
T COG2247 145 DALMELMKEGIVPVILKNTSI 165 (337)
T ss_pred HHHHHHHhcCcceeEeccccc
Confidence 2899999999 7787776643
No 392
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=42.57 E-value=1.6e+02 Score=22.93 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=33.0
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCC---------------CCCEEEecCCCHHHHHHhhc--cccEEEcCCCCCCchHHH
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLD---------------QHRILFSNVAAKEEHVRRGQ--LADVCLDTPLCNGHTTSM 76 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~---------------~~rv~f~g~~~~~~~~~~~~--~~Dv~l~~~~~~~g~~~l 76 (130)
++.|+|+ |.....+.+.++++|+. .+...+.+..+.+.+..+.. .+|+.+..+..-...++.
T Consensus 1 kililG~-g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v~~~~~~ 79 (380)
T TIGR01142 1 RVLLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIEAIATDALF 79 (380)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCccCHHHHH
Confidence 3567774 33333344446666641 02333334444455555554 477776443322112222
Q ss_pred HHHhcCCcEE
Q psy15363 77 DVLWTGTPVV 86 (130)
Q Consensus 77 EAla~G~PvV 86 (130)
+.-..|+|+.
T Consensus 80 ~l~~~g~~~~ 89 (380)
T TIGR01142 80 ELEKEGYFVV 89 (380)
T ss_pred HHHhcCCeeC
Confidence 2234577754
No 393
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=42.50 E-value=1.4e+02 Score=22.17 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=19.9
Q ss_pred HhcCCcEEecCCCchhhhhHHHHHHh
Q psy15363 79 LWTGTPVVTLPGETLASRVAASQLAT 104 (130)
Q Consensus 79 la~G~PvV~~~g~~~~~r~~~~~l~~ 104 (130)
+.+|+|-|+..|..=-+-+.++++++
T Consensus 175 ~~~~vP~It~~GrkGGS~vAaAivNA 200 (210)
T PRK06264 175 RNTNIPSISTIGPKGGTPVAVSIING 200 (210)
T ss_pred HhCCCCEEEEecCCCcHHHHHHHHHH
Confidence 56799999998876666677777664
No 394
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=42.45 E-value=73 Score=18.92 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=36.3
Q ss_pred EEEeecCccc-HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHh-hccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 15 LWLLKFPAVG-EANIQATAQALGLDQHRILFSNVAAKEEHVRR-GQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 15 l~i~g~~~~~-~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~-~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.+++++.|.. ..-++..+++.- . +.. +...++..++... ....|+.+.|.+.. ..+.|||..
T Consensus 3 ilivC~~G~~~s~~l~~~l~~~~-~-~~~-~v~~~~~~~~~~~~~~~~DlIitT~~l~---------~~~~pvi~i 66 (85)
T cd05568 3 ALVVCPSGIGTSRLLKSKLKKLF-P-EIE-IIDVISLRELEEVDLDDYDLIISTVPLE---------DTDKPVIVV 66 (85)
T ss_pred EEEECCCCHHHHHHHHHHHHHHC-C-Cce-EEEEEeHHHHhhCcccCCCEEEEccccC---------CCCCCEEEE
Confidence 4555544543 334555555432 2 332 2356666666655 56799999888754 246899864
No 395
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=42.35 E-value=1.8e+02 Score=23.76 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=48.9
Q ss_pred HHHhhCCC-cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC--------------------HHHHHHhhc--ccc
Q psy15363 5 FVLKAVPN-SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--------------------KEEHVRRGQ--LAD 61 (130)
Q Consensus 5 ~il~~~P~-a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~--------------------~~~~~~~~~--~~D 61 (130)
.|.++.|+ .+++.+.. +...+.|.++++++. ++.|.+...-. .+.+..+.. .+|
T Consensus 19 ~Vi~~~~~~f~v~~Laa-~~n~~~L~~q~~~f~--p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G~~~l~~l~~~~~~D 95 (389)
T TIGR00243 19 DVVRHNPDHFQVVALSA-GKNVALMVEQILEFR--PKFVAIDDEASLKDLKTMLQQQGSRTEVLVGEEGICEMAALEDVD 95 (389)
T ss_pred HHHHhCccccEEEEEEc-CCCHHHHHHHHHHcC--CCEEEEcCHHHHHHHHHHhhcCCCCcEEEECHHHHHHHHcCCCCC
Confidence 34556664 55544443 345566777777765 24444433211 122333333 368
Q ss_pred EEEcCC-CCCCchHHHHHHhcCCcEEecCCCch
Q psy15363 62 VCLDTP-LCNGHTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 62 v~l~~~-~~~~g~~~lEAla~G~PvV~~~g~~~ 93 (130)
+.+... .+.|=..+++|+-.|+.+-.-..+.+
T Consensus 96 ~vv~AivG~aGL~pt~~Ai~~gk~iaLANKEsL 128 (389)
T TIGR00243 96 QVMNAIVGAAGLLPTLAAIRAGKTIALANKESL 128 (389)
T ss_pred EEEEhhhcHhhHHHHHHHHHCCCcEEEechhHH
Confidence 888765 34555679999999998665554443
No 396
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=42.15 E-value=30 Score=24.81 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=9.7
Q ss_pred HHHHHHHHHHcCCCCCCEEE
Q psy15363 25 EANIQATAQALGLDQHRILF 44 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f 44 (130)
...+++.+.+.|++.++|+.
T Consensus 199 ~~~~~~~L~~~Gv~~~~i~~ 218 (222)
T cd06194 199 VNAVRRRAFLAGAPMKRIYA 218 (222)
T ss_pred HHHHHHHHHHcCCCHHHeee
Confidence 34444445555555444443
No 397
>PRK08291 ectoine utilization protein EutC; Validated
Probab=42.11 E-value=1.1e+02 Score=23.88 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=40.0
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH--HH------------------HHHhhccccEEEcCCCCCCc
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK--EE------------------HVRRGQLADVCLDTPLCNGH 72 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~--~~------------------~~~~~~~~Dv~l~~~~~~~g 72 (130)
.++.++|.++..+..+..+....++ ++|...++-+. ++ ....+..+|+++.+.+-...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~--~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~p 210 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPI--REVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEEP 210 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC--CEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCCc
Confidence 4777888654445555555443444 45555554421 11 22334568888765554444
Q ss_pred hHHHHHHhcCCcEEec
Q psy15363 73 TTSMDVLWTGTPVVTL 88 (130)
Q Consensus 73 ~~~lEAla~G~PvV~~ 88 (130)
..-.|.+..|..|.+.
T Consensus 211 ~i~~~~l~~g~~v~~v 226 (330)
T PRK08291 211 ILKAEWLHPGLHVTAM 226 (330)
T ss_pred EecHHHcCCCceEEee
Confidence 4444556667666654
No 398
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=42.08 E-value=1.2e+02 Score=21.31 Aligned_cols=119 Identities=10% Similarity=0.056 Sum_probs=61.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCC----CHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcCCc
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVA----AKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGTP 84 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~----~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G~P 84 (130)
|+-++.++|.+|.++..|-+.+.-. .-...+|.+-|.- +.......++..-.|+...+. -...++.|-+..+..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~ 102 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK 102 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHH
Confidence 5678889998888998888876632 2222567777652 111111112221222322221 123566666555432
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
.-......... ....++..+|+++.... ....-+.+|..|+.+|+
T Consensus 103 ~~~~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 103 YKKLSKKEKRE-KKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred hcCCCHHHHHH-HHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 11001111111 23567777888654432 34556788888888774
No 399
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=42.06 E-value=34 Score=28.13 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=38.5
Q ss_pred HHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHhcCC----c--EEecCCCch
Q psy15363 32 AQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLWTGT----P--VVTLPGETL 93 (130)
Q Consensus 32 ~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla~G~----P--vV~~~g~~~ 93 (130)
++-.|+. +-|.++++-+..-....+..|+++ ++...--||.-.+-|||.|+ | .|+-+|..+
T Consensus 146 AkvAGV~-~Iv~~TPp~~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTetIp~VDkIvGPGN~y 213 (425)
T PRK00877 146 AKVAGVK-EIVMVTPPPDGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTESIPKVDKIVGPGNIY 213 (425)
T ss_pred hhhcCCC-eEEEEeCCCCCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCCCCCCcEEECCCcHH
Confidence 5677996 666667653111123344456666 55555568889999999998 4 456677644
No 400
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=41.91 E-value=22 Score=26.82 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=8.7
Q ss_pred HHHHHHHHHHcCCCCCCEE
Q psy15363 25 EANIQATAQALGLDQHRIL 43 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~ 43 (130)
.+.+++.++++|++.++|+
T Consensus 261 ~~~~~~~l~~~Gv~~~~i~ 279 (283)
T cd06188 261 NSAVIKMLDDLGVPRENIA 279 (283)
T ss_pred HHHHHHHHHHcCCCHHHee
Confidence 3444444444555444443
No 401
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=41.69 E-value=1.6e+02 Score=22.71 Aligned_cols=75 Identities=8% Similarity=-0.023 Sum_probs=42.9
Q ss_pred EEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC-----CHHHHHHhhcc---cc---EEEcCCCCCCchHHHHHHh--c
Q psy15363 15 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-----AKEEHVRRGQL---AD---VCLDTPLCNGHTTSMDVLW--T 81 (130)
Q Consensus 15 l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~-----~~~~~~~~~~~---~D---v~l~~~~~~~g~~~lEAla--~ 81 (130)
+-+++.+|..-..+-.++++.|+--..+.=+|.- +..|++.++.. .. +|+.+...... ...+.+. .
T Consensus 146 ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~-~~~~~~~~~~ 224 (286)
T TIGR01019 146 VGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEE-EAADFIKQNM 224 (286)
T ss_pred EEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHH-HHHHHHHhcC
Confidence 4455543333345667778778765677777753 56788777744 22 33443322111 2334444 7
Q ss_pred CCcEEecCC
Q psy15363 82 GTPVVTLPG 90 (130)
Q Consensus 82 G~PvV~~~g 90 (130)
++|||.++.
T Consensus 225 ~KPVV~lk~ 233 (286)
T TIGR01019 225 SKPVVGFIA 233 (286)
T ss_pred CCCEEEEEe
Confidence 999999853
No 402
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=41.66 E-value=1.2e+02 Score=25.40 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=51.1
Q ss_pred cEEEEeecC--c----ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh--cCCc
Q psy15363 13 SILWLLKFP--A----VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTP 84 (130)
Q Consensus 13 a~l~i~g~~--~----~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla--~G~P 84 (130)
-++-|+|.. + .+-..|+++++..|+. =+++|.+..+.+++.. +..|++-+-.+++ .|..+.|.|- .|+|
T Consensus 164 ~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~-vn~v~~~g~sl~di~~-~~~A~~NIvl~~~-~g~~~A~~Le~~fgiP 240 (513)
T CHL00076 164 PSVNIIGIFTLGFHNQHDCRELKRLLQDLGIE-INQIIPEGGSVEDLKN-LPKAWFNIVPYRE-VGLMTAKYLEKEFGMP 240 (513)
T ss_pred CcEEEEecCCCCCCCcchHHHHHHHHHHCCCe-EEEEECCCCCHHHHHh-cccCcEEEEechh-hhHHHHHHHHHHhCCC
Confidence 345667632 1 2457899999999997 6678887778888765 5677777755664 4566777775 5999
Q ss_pred EEec
Q psy15363 85 VVTL 88 (130)
Q Consensus 85 vV~~ 88 (130)
.+..
T Consensus 241 ~i~~ 244 (513)
T CHL00076 241 YIST 244 (513)
T ss_pred eEee
Confidence 8763
No 403
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=41.01 E-value=1.2e+02 Score=22.02 Aligned_cols=6 Identities=0% Similarity=0.174 Sum_probs=2.9
Q ss_pred CCCcEE
Q psy15363 10 VPNSIL 15 (130)
Q Consensus 10 ~P~a~l 15 (130)
.|+..+
T Consensus 37 ~pd~vl 42 (207)
T PRK11475 37 SFSAVI 42 (207)
T ss_pred CCCEEE
Confidence 455544
No 404
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=40.83 E-value=1.4e+02 Score=21.97 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.5
Q ss_pred hHHHHHHhcCCcEEecCC
Q psy15363 73 TTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 73 ~~~lEAla~G~PvV~~~g 90 (130)
..+++++..|+||++...
T Consensus 81 ~~I~~~LL~GK~V~v~~e 98 (207)
T TIGR02536 81 KFIIAFLLEGKPIYILKP 98 (207)
T ss_pred HHHHHHHHCCCeEEEEec
Confidence 458999999999999853
No 405
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=40.83 E-value=88 Score=24.58 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=43.0
Q ss_pred CCEEEecC---CCHHHHHHhhccccEEE-cCC-CCCC--c----hHHHHHHhcCCcEEec----CCCchhhhhHHHHHHh
Q psy15363 40 HRILFSNV---AAKEEHVRRGQLADVCL-DTP-LCNG--H----TTSMDVLWTGTPVVTL----PGETLASRVAASQLAT 104 (130)
Q Consensus 40 ~rv~f~g~---~~~~~~~~~~~~~Dv~l-~~~-~~~~--g----~~~lEAla~G~PvV~~----~g~~~~~r~~~~~l~~ 104 (130)
.+|.|.|. .+..+....+..+|+.+ -|+ |+++ + --+-||+ +..|||.. .+....+ -.+.++.+
T Consensus 163 ~~v~~~~~~~a~a~p~vl~AI~~AD~IiiGPgnp~TSI~P~L~v~gi~eAL-~~a~vV~Vsp~Ig~~~v~G-PA~~lm~a 240 (303)
T PRK13606 163 LDVVFVGAEKAKPAPGVLEAIEEADAVIIGPSNPVTSIGPILAVPGIREAL-TEAPVVAVSPIIGGAPVSG-PAAKLMAA 240 (303)
T ss_pred EEEEEeCcccCCCCHHHHHHHHhCCEEEECCCccHHhhchhccchhHHHHH-hCCCEEEEcCCCCCCcCCC-hhHHHHHH
Confidence 68999883 34577888899999985 454 5542 2 2367999 89999933 3332222 34556666
Q ss_pred cCCC
Q psy15363 105 LGCP 108 (130)
Q Consensus 105 ~g~~ 108 (130)
.|++
T Consensus 241 ~g~e 244 (303)
T PRK13606 241 IGVE 244 (303)
T ss_pred cCCc
Confidence 6664
No 406
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=40.76 E-value=96 Score=23.98 Aligned_cols=75 Identities=12% Similarity=0.035 Sum_probs=45.0
Q ss_pred hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEEe
Q psy15363 9 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 9 ~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~ 87 (130)
+.|+..+.-+.+..+....+ ++++++|+. ..+. +.+++.. -...|+.++..| ...--....|+..|++|+.
T Consensus 22 ~~~~~elvaV~d~d~es~~l-a~A~~~Gi~---~~~~---~~e~ll~-~~dIDaV~iaTp~~~H~e~a~~al~aGk~VId 93 (285)
T TIGR03215 22 RSEHLEMVAMVGIDPESDGL-ARARELGVK---TSAE---GVDGLLA-NPDIDIVFDATSAKAHARHARLLAELGKIVID 93 (285)
T ss_pred hCCCcEEEEEEeCCcccHHH-HHHHHCCCC---EEEC---CHHHHhc-CCCCCEEEECCCcHHHHHHHHHHHHcCCEEEE
Confidence 37888887666433333332 457777864 2232 2344432 135788876554 4445567889999999987
Q ss_pred cCCC
Q psy15363 88 LPGE 91 (130)
Q Consensus 88 ~~g~ 91 (130)
.+.-
T Consensus 94 ekPa 97 (285)
T TIGR03215 94 LTPA 97 (285)
T ss_pred CCcc
Confidence 7543
No 407
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=40.58 E-value=1.9e+02 Score=23.05 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=35.7
Q ss_pred CCEEEecCCCH--HHHHHhhcc---ccEEEcCCCCCCchH--H-HHHHhcCCcEEecCCCchhhhhHHHHHHh
Q psy15363 40 HRILFSNVAAK--EEHVRRGQL---ADVCLDTPLCNGHTT--S-MDVLWTGTPVVTLPGETLASRVAASQLAT 104 (130)
Q Consensus 40 ~rv~f~g~~~~--~~~~~~~~~---~Dv~l~~~~~~~g~~--~-lEAla~G~PvV~~~g~~~~~r~~~~~l~~ 104 (130)
+.|+..|..|- -++..++.. -.+.+ -.|-++-.+ . -+-+.+|+|-|+..|..=.+-+.++++++
T Consensus 257 ~~i~viGnAPTAL~~l~~li~~~~~palvi-g~PVGFV~a~esKe~L~~~~vP~I~~~G~kGGs~vAaa~vNa 328 (335)
T PRK05782 257 GKVVVIGNAPTALIETLKLVKEGVDIPFIV-ATPPGFTNAKEVKEALIESGIPSVVLRGTYGGSGIAVAIINE 328 (335)
T ss_pred CCEEEEeCcHHHHHHHHHHHhcCCCCcEEE-EeCCcccCHHHHHHHHHhCCCCEEEEecCCCcHHHHHHHHHH
Confidence 55777887773 233333322 11111 124343222 1 23356799999998876667777777765
No 408
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=40.45 E-value=26 Score=25.36 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=10.5
Q ss_pred cHHHHHHHHHHcCCCCCCEEE
Q psy15363 24 GEANIQATAQALGLDQHRILF 44 (130)
Q Consensus 24 ~~~~l~~~~~~~g~~~~rv~f 44 (130)
..+.+++.++++|+++++|++
T Consensus 208 mv~~~~~~l~~~G~~~~~i~~ 228 (231)
T cd06191 208 MMDAVETALKELGMPPERIHT 228 (231)
T ss_pred HHHHHHHHHHHcCCCHHHeee
Confidence 344455555555555445443
No 409
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=40.40 E-value=1.1e+02 Score=25.09 Aligned_cols=72 Identities=10% Similarity=-0.045 Sum_probs=47.8
Q ss_pred cEEEEeecCc--ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCcEEe
Q psy15363 13 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVT 87 (130)
Q Consensus 13 a~l~i~g~~~--~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~PvV~ 87 (130)
-.+-++|.-. .+...+++++++.|+. -+..|.+..+.+++.. +..|.+-+-..+. .+..+.+.| -.|+|.+.
T Consensus 198 ~~VNiiG~~~~~~d~~el~~lL~~~Gl~-v~~~~~~~~s~eei~~-~~~A~lniv~~~~-~~~~~a~~L~e~~GiP~~~ 273 (456)
T TIGR01283 198 HDINLIGEFNVAGEFWHVKPLLEKLGIR-VLATITGDSRYAEVQT-AHRAKLNMVQCSK-SMINLARKMEEKYGIPYFE 273 (456)
T ss_pred CcEEEEcCCCCcccHHHHHHHHHHcCCe-EEEEeCCCCcHHHHHh-cccCcEEEEECHh-HHHHHHHHHHHHcCCCEEe
Confidence 3466777422 2346899999999996 5667888778888864 4566666533333 224466666 56999986
No 410
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=40.30 E-value=1.4e+02 Score=22.82 Aligned_cols=117 Identities=13% Similarity=0.016 Sum_probs=59.0
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEE-EcCCC-CCCchHHHHHHhcCCcEEe
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPL-CNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~-~~~g~~~lEAla~G~PvV~ 87 (130)
|+-++.++|.+|.++..+-+.+.-+ .-...+|.+.|.-..... ..+ ...+. +.-.+ .-...++.|-+......-.
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~-~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 106 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLA-RVAIGVVPQFDNLDPEFTVRENLLVFGRYFG 106 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHH-hhcEEEEeccccCCcCCcHHHHHHHHHHHcC
Confidence 5678889998888999888877632 122257887774211111 111 11232 22111 1123566666643111000
Q ss_pred cCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 88 LPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 88 ~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
........+ ...++...|+++.... ....-+.+|..|+.+|+
T Consensus 107 ~~~~~~~~~-~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 107 MSTREIEAV-IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred CCHHHHHHH-HHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 011111122 3456777888765433 23455777888887774
No 411
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=40.29 E-value=95 Score=25.89 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=40.3
Q ss_pred HHHHhhCCCcEEEEeecCcccHHH---HHHHHHHcCCCCCCEEEecCCC-HHHHHHhhccccEE
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEAN---IQATAQALGLDQHRILFSNVAA-KEEHVRRGQLADVC 63 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~---l~~~~~~~g~~~~rv~f~g~~~-~~~~~~~~~~~Dv~ 63 (130)
.+|+...||..|+.-|..|..++. ..+++.+.++. --|++.|... ++++..++..+++.
T Consensus 114 ~~I~~~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~-~pIIyAGN~~a~~~V~~il~~~~~~ 176 (463)
T TIGR01319 114 EAIEESNLDIILFAGGTDGGEEECGIHNAKMLAEHGLD-CAIIVAGNKDIQDEVQEIFDHADIF 176 (463)
T ss_pred HHHhhcCCCEEEEeCCcCCCchHHHHHHHHHHHhcCCC-CcEEEeCCHHHHHHHHHHHhcCCce
Confidence 467777888877554443334444 33466777776 6799999987 67788888776664
No 412
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=40.16 E-value=2.2e+02 Score=23.77 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=55.1
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEE-EcC-CCCCCchHHHHHHhc---CCcE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVC-LDT-PLCNGHTTSMDVLWT---GTPV 85 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~-l~~-~~~~~g~~~lEAla~---G~Pv 85 (130)
.+++++.+...-+..+...+...|. +|...... .+....+.. .|++ +|- .|...|..+++.+.. ++||
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~---~v~~a~~~--~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pV 79 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGY---EVVTAESA--EEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPV 79 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCC---eEEEeCCH--HHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCE
Confidence 4567787643346677777888774 34444433 444444433 5766 454 366678888887665 7999
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCcee
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIA 112 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va 112 (130)
|.+.|..-..+...++ ..|.-+|+.
T Consensus 80 I~~Tg~g~i~~AV~A~--k~GA~Dfl~ 104 (464)
T COG2204 80 IVMTGHGDIDTAVEAL--RLGAFDFLE 104 (464)
T ss_pred EEEeCCCCHHHHHHHH--hcCcceeee
Confidence 9987754433333222 125556554
No 413
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=40.15 E-value=22 Score=25.99 Aligned_cols=12 Identities=25% Similarity=0.044 Sum_probs=5.5
Q ss_pred HHhhCCCcEEEE
Q psy15363 6 VLKAVPNSILWL 17 (130)
Q Consensus 6 il~~~P~a~l~i 17 (130)
+.++.|+.++..
T Consensus 161 l~~~~~~~~~~~ 172 (238)
T cd06211 161 LEKDHPNFKYVP 172 (238)
T ss_pred HHHhCCCeEEEE
Confidence 334455554433
No 414
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=40.14 E-value=36 Score=23.39 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=22.9
Q ss_pred EEEEeecCcccHHHHH-HHHHHcCCCCCCEEEecCCCHHHHHH
Q psy15363 14 ILWLLKFPAVGEANIQ-ATAQALGLDQHRILFSNVAAKEEHVR 55 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~-~~~~~~g~~~~rv~f~g~~~~~~~~~ 55 (130)
|+++-|.+|.++..+. .+++..|.+-.||.|++..-..|+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G 43 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILG 43 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCccccee
Confidence 4667776666666555 46788888778999988777777643
No 415
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=39.98 E-value=32 Score=23.37 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=29.2
Q ss_pred CC-CcEEEEeecCcc--cHHHHHHHHHHcCCCCCCEEEec
Q psy15363 10 VP-NSILWLLKFPAV--GEANIQATAQALGLDQHRILFSN 46 (130)
Q Consensus 10 ~P-~a~l~i~g~~~~--~~~~l~~~~~~~g~~~~rv~f~g 46 (130)
.| +.||++|....+ ...-+++.++..+++++.+.|+.
T Consensus 32 lp~~~rLliV~~~~~~~~~~L~~dVLrsl~L~~~q~~~lt 71 (128)
T PRK06856 32 LPEHIRLVIVAEELPALTDPLLQDVLRSLTLSPDQVLCLT 71 (128)
T ss_pred CCccceEEEEeCCCCcccChHHHHHHHHcCCCHHHeeeeC
Confidence 45 589999997544 23578889999999988999876
No 416
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=39.96 E-value=1.4e+02 Score=21.38 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=10.4
Q ss_pred HHHHHHhcCCcEEecCC
Q psy15363 74 TSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 74 ~~lEAla~G~PvV~~~g 90 (130)
...++...|+|||+...
T Consensus 71 ~~~~~~~~~ipvv~~~~ 87 (264)
T cd01574 71 AALAAAPADVPVVFVDG 87 (264)
T ss_pred HHHHHHhcCCCEEEEec
Confidence 34555666777777643
No 417
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=39.84 E-value=1.8e+02 Score=22.73 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=63.8
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCC----CHHHHHHhhccccEE-EcCCC-CCCchHHHHHHhcCC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVA----AKEEHVRRGQLADVC-LDTPL-CNGHTTSMDVLWTGT 83 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~----~~~~~~~~~~~~Dv~-l~~~~-~~~g~~~lEAla~G~ 83 (130)
|+-.+.++|.+|.++..|-+.+..+ .....+|.+-|.- +..+...+- ..+. +...+ .-...++.|-+..+.
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~--~~ig~v~q~~~l~~~~tv~eni~~~~ 107 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR--RQIGMIFQHFNLLSSRTVFDNVALPL 107 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh--cCEEEEeCCCccCCCCcHHHHHHHHH
Confidence 5677889998888999988887633 1222568777642 222222211 2232 22222 112356677766543
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
..-..+..... .....+++.+|++++... ....-+.+|..|+.+|+
T Consensus 108 ~~~~~~~~~~~-~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 108 ELAGTPKAEIK-ARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred HHcCCCHHHHH-HHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 21111111111 223567888888765432 34667888888888874
No 418
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=39.48 E-value=1.9e+02 Score=22.71 Aligned_cols=76 Identities=11% Similarity=-0.053 Sum_probs=41.8
Q ss_pred hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHh--hccccEEEcCCC-CCCchHHHHHHhcCCcE
Q psy15363 9 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRR--GQLADVCLDTPL-CNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 9 ~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~--~~~~Dv~l~~~~-~~~g~~~lEAla~G~Pv 85 (130)
+.|+..+.-+.+..+..+ -.++++++|+. - .+ -+.++++.. +...|+.++..+ ...--....+...|+.|
T Consensus 25 ~~~~velvAVvdid~es~-gla~A~~~Gi~-~--~~---~~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~eaGk~V 97 (302)
T PRK08300 25 RSEHLEPGAMVGIDPESD-GLARARRLGVA-T--SA---EGIDGLLAMPEFDDIDIVFDATSAGAHVRHAAKLREAGIRA 97 (302)
T ss_pred cCCCcEEEEEEeCChhhH-HHHHHHHcCCC-c--cc---CCHHHHHhCcCCCCCCEEEECCCHHHHHHHHHHHHHcCCeE
Confidence 368888876664322222 23447777764 1 11 223445442 245787776443 33334466677788888
Q ss_pred EecCCC
Q psy15363 86 VTLPGE 91 (130)
Q Consensus 86 V~~~g~ 91 (130)
|....-
T Consensus 98 ID~sPA 103 (302)
T PRK08300 98 IDLTPA 103 (302)
T ss_pred EECCcc
Confidence 876543
No 419
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=39.39 E-value=23 Score=25.57 Aligned_cols=12 Identities=25% Similarity=0.027 Sum_probs=5.9
Q ss_pred HHhhCCCcEEEE
Q psy15363 6 VLKAVPNSILWL 17 (130)
Q Consensus 6 il~~~P~a~l~i 17 (130)
+.++.|+.++.+
T Consensus 150 l~~~~~~~~~~~ 161 (224)
T cd06189 150 WAEAHPNFTYVP 161 (224)
T ss_pred HHHhCCCeEEEE
Confidence 334456655543
No 420
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=39.27 E-value=67 Score=20.99 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=17.6
Q ss_pred HHHHhhCCCcEEEEeecCcc---cHHHHHHHHHHcCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAV---GEANIQATAQALGL 37 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~---~~~~l~~~~~~~g~ 37 (130)
..++...|+ ++++|.+.. ..+.+++.++++|+
T Consensus 46 ~~l~~~~pe--iliiGTG~~~~~~~~~~~~~l~~~gi 80 (109)
T cd05560 46 EALLALQPE--VILLGTGERQRFPPPALLAPLLARGI 80 (109)
T ss_pred HHHHhcCCC--EEEEecCCCCCcCCHHHHHHHHHcCC
Confidence 445555564 556665321 13556666777776
No 421
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=39.22 E-value=28 Score=24.94 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=18.6
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILF 44 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f 44 (130)
..+++.| +....+.+++.+++.|+++++|++
T Consensus 182 ~~vyicG-p~~m~~~v~~~l~~~Gv~~~~I~~ 212 (216)
T cd06198 182 ADVWFCG-PPGMADALEKGLRALGVPARRFHY 212 (216)
T ss_pred CeEEEEC-cHHHHHHHHHHHHHcCCChHhcch
Confidence 4444444 334556667777777777666654
No 422
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=39.16 E-value=54 Score=23.90 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=17.0
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILF 44 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f 44 (130)
..+++.| +......+++.+++.|++ ++|++
T Consensus 211 ~~vyvcG-p~~m~~~~~~~l~~~Gv~-~~i~~ 240 (243)
T cd06216 211 RQVYACG-PPGFLDAAEELLEAAGLA-DRLHT 240 (243)
T ss_pred CeEEEEC-CHHHHHHHHHHHHHCCCc-cceee
Confidence 3444454 334445666666677776 66654
No 423
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=39.14 E-value=1.5e+02 Score=22.90 Aligned_cols=66 Identities=6% Similarity=-0.036 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHH--HHhc-CCcEEecCCCc
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMD--VLWT-GTPVVTLPGET 92 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lE--Ala~-G~PvV~~~g~~ 92 (130)
...+++.+.++|++++++++.+...-......|-..+.+..+ ++.+....= +++. ..|||+..|+.
T Consensus 19 l~al~~al~~l~~~~~~~ivvsdiGc~~~~~~~~~~~~~~~~--~G~alp~A~GaklA~Pd~~VV~i~GDG 87 (279)
T PRK11866 19 LEALRKALAELGIPPENVVVVSGIGCSSNLPEFLNTYGIHGI--HGRVLPIATGVKWANPKLTVIGYGGDG 87 (279)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCchhhhhhhhccCCCcccc--cccHHHHHHHHHHHCCCCcEEEEECCh
Confidence 367888889999987888887766532222222112211111 233333322 2333 57899998875
No 424
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=38.97 E-value=2.3e+02 Score=23.63 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHHHhhc--cccEEEcCCC-CCCchHHHHHHhcCCcEEecCCCch
Q psy15363 52 EHVRRGQ--LADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 52 ~~~~~~~--~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~~g~~~ 93 (130)
.+..+.. .+|+++.... ..|-..+++|+.+|+.|..-+.+.+
T Consensus 140 gl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESL 184 (454)
T PLN02696 140 GIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL 184 (454)
T ss_pred HHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHH
Confidence 3434443 3688887653 4455567999999999877665544
No 425
>TIGR03586 PseI pseudaminic acid synthase.
Probab=38.71 E-value=2e+02 Score=22.78 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc-ccEEEcCCCCCCchHHHHHHh-cCCcEEecCCCchhhh--hHHHHH
Q psy15363 27 NIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETLASR--VAASQL 102 (130)
Q Consensus 27 ~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~-~Dv~l~~~~~~~g~~~lEAla-~G~PvV~~~g~~~~~r--~~~~~l 102 (130)
.|.+.+++.|+. ++.-..+.+..--+... +|++=-.+..-.-..++++++ .|+||+...|-.-.+- .....+
T Consensus 81 ~L~~~~~~~Gi~----~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i 156 (327)
T TIGR03586 81 ELFERAKELGLT----IFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEAC 156 (327)
T ss_pred HHHHHHHHhCCc----EEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHH
Confidence 566778898986 44444444333222233 677733444434466777765 6899998887532222 234455
Q ss_pred HhcCCCCc
Q psy15363 103 ATLGCPEL 110 (130)
Q Consensus 103 ~~~g~~~~ 110 (130)
...|.+++
T Consensus 157 ~~~g~~~i 164 (327)
T TIGR03586 157 REAGCKDL 164 (327)
T ss_pred HHCCCCcE
Confidence 55676553
No 426
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=38.62 E-value=68 Score=27.98 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=66.7
Q ss_pred cEEEEeecCcccHH---HHHHHHHHcC-CCCCCEEEecCCC--HH-----HHHHhhccccEEEcCCCCCCchHHHHHHhc
Q psy15363 13 SILWLLKFPAVGEA---NIQATAQALG-LDQHRILFSNVAA--KE-----EHVRRGQLADVCLDTPLCNGHTTSMDVLWT 81 (130)
Q Consensus 13 a~l~i~g~~~~~~~---~l~~~~~~~g-~~~~rv~f~g~~~--~~-----~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~ 81 (130)
...+++|+==.... ..-++++..+ --+-|+-..++.. .. -+..++..+-..+.-..++-++--.+=.+-
T Consensus 693 idevFiGSCMtniGh~ra~~klL~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~PGCsLCMGNQarv~d 772 (852)
T COG1049 693 IDEVFIGSCMTNIGHFRAAGKLLENAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPGCSLCMGNQARVAD 772 (852)
T ss_pred cceeeeehhhccchhHHHHHHHHHhcccCCCcceEecCCccccHHHHhhcchHHHHhhccceecCCCcccccccHhhhcc
Confidence 45667774111111 2234444443 2236776666543 22 245666777777766666666666777888
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCce--------ecCHHHHHHHHHHhc
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELI--------ARTHKEYQDIAIRLG 126 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~v--------a~~~~~y~~~a~~l~ 126 (130)
|.-|+++..+++.+|++..--..+|-.++. ..+.+||.+.+..+-
T Consensus 773 gatV~sTSTRnF~nRlg~~a~vyL~Saelaav~aiLGkiPt~eEY~~~v~~i~ 825 (852)
T COG1049 773 GATVFSTSTRNFPNRLGKGANVYLASAELAAVCAILGKIPTVEEYMAYVAKID 825 (852)
T ss_pred CCEEEeeccccCCcccccccceeeeccHHHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 999999999999998753211112222322 267899988877543
No 427
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=38.53 E-value=1.8e+02 Score=23.17 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=67.1
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcC-CCCCCEEEecCC----CHHHHHHhhccccEE-EcCCCCC-CchHHHHHHhcCC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALG-LDQHRILFSNVA----AKEEHVRRGQLADVC-LDTPLCN-GHTTSMDVLWTGT 83 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g-~~~~rv~f~g~~----~~~~~~~~~~~~Dv~-l~~~~~~-~g~~~lEAla~G~ 83 (130)
++-.+.++|.+|.++..|-+.+..+- ....+|.+-|.- +..++.. ++.-.+. +.-.+.- ...|+.|-++.+.
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~-~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~ 96 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELRE-VRRKKIGMVFQQFALFPHMTILQNTSLGP 96 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH-HHhCcEEEEECCCcCCCCCCHHHHHHHHH
Confidence 56788899988888988888776442 223568777741 2223321 1122333 2111211 2356778777765
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
........ -.......++..+|+.++... ....-+.+|..|+.||+
T Consensus 97 ~~~~~~~~-~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~ 149 (363)
T TIGR01186 97 ELLGWPEQ-ERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPD 149 (363)
T ss_pred HHcCCCHH-HHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 43211111 112234667888899776543 34677888888888874
No 428
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=38.21 E-value=59 Score=26.33 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=30.5
Q ss_pred CCCCCch-----HHHHHHhcCCcEEecCCCc--hhhhhHHHHHHhcCCCC
Q psy15363 67 PLCNGHT-----TSMDVLWTGTPVVTLPGET--LASRVAASQLATLGCPE 109 (130)
Q Consensus 67 ~~~~~g~-----~~lEAla~G~PvV~~~g~~--~~~r~~~~~l~~~g~~~ 109 (130)
.||+++. .++-||++|-+||..+.+. ..+..-..++...|+|+
T Consensus 105 ~PwN~P~~~~~~~~~~ALaaGN~VI~Kps~~~~~~~~~l~~~~~~ag~P~ 154 (431)
T cd07095 105 GPFNFPGHLPNGHIVPALLAGNTVVFKPSELTPAVAELMVELWEEAGLPP 154 (431)
T ss_pred CCCchHHHHHHHHHHHHHhcCCEEEeeCCCCCcHHHHHHHHHHHHhCcCh
Confidence 3555443 5788999999999987654 34445566777788885
No 429
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=38.15 E-value=1.9e+02 Score=22.34 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=42.5
Q ss_pred HhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC--CCH-H-------HHHHhhcc--ccEEEcCCCCC-Cch
Q psy15363 7 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV--AAK-E-------EHVRRGQL--ADVCLDTPLCN-GHT 73 (130)
Q Consensus 7 l~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~--~~~-~-------~~~~~~~~--~Dv~l~~~~~~-~g~ 73 (130)
+++.|+..+.++-+ |.....+.+..+.+|+.++.-..++. .+. + .+..+++. -|+.+.-.... .-.
T Consensus 23 l~~~~~~~~~~~~t-g~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la 101 (365)
T TIGR00236 23 LKKYPEIDSYVIVT-AQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLA 101 (365)
T ss_pred HhhCCCCCEEEEEe-CCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHH
Confidence 44556444444443 23446677888889997443223333 221 1 12223333 47776433222 222
Q ss_pred HHHHHHhcCCcEEec
Q psy15363 74 TSMDVLWTGTPVVTL 88 (130)
Q Consensus 74 ~~lEAla~G~PvV~~ 88 (130)
..+=|...|+|++..
T Consensus 102 ~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 102 GALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHhCCCEEEE
Confidence 466678899999965
No 430
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=38.10 E-value=2e+02 Score=22.81 Aligned_cols=112 Identities=16% Similarity=0.041 Sum_probs=62.6
Q ss_pred cEEEEeecCcccHHH-HHHHHHHcCCCC-CCEEEecCCCHHHHHHhhcc------ccEEEc-CCC-CCCchHHHHHHhc-
Q psy15363 13 SILWLLKFPAVGEAN-IQATAQALGLDQ-HRILFSNVAAKEEHVRRGQL------ADVCLD-TPL-CNGHTTSMDVLWT- 81 (130)
Q Consensus 13 a~l~i~g~~~~~~~~-l~~~~~~~g~~~-~rv~f~g~~~~~~~~~~~~~------~Dv~l~-~~~-~~~g~~~lEAla~- 81 (130)
-++.+++. |.+-.. -...+..+|..+ +-+.+.|..+.+.+...+.. +|..+- .+. ......+.+++..
T Consensus 257 G~i~~i~n-G~Gl~~~t~D~~~~~g~~~aNplDlgg~a~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i~~a 335 (386)
T TIGR01016 257 GNIGCMVN-GAGLAMATMDIIKLYGGEPANFLDVGGGASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLVEA 335 (386)
T ss_pred CcEEEEEC-CccHHHHHHHHHHHcCCCCCCcEEecCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 34445553 233222 235677788765 44777665555555444432 465542 221 1112334444442
Q ss_pred ----C--CcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 82 ----G--TPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 82 ----G--~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
+ +|+++.-.. .....+..+|+..|++-.+.++.++=++.+++++
T Consensus 336 ~~~~~~~kPvvv~~~g-~~~~~~~~~L~~~G~~ip~~~~~~~Av~~~~~~~ 385 (386)
T TIGR01016 336 LKEVGVNVPVVVRLEG-TNVEEGKKILAESGLNIIFATSMEEAAEKAVEAA 385 (386)
T ss_pred HHhcCCCCcEEEEeCC-ccHHHHHHHHHHcCCCccccCCHHHHHHHHHHhh
Confidence 4 898765432 2233455678888866667789999999999875
No 431
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=37.85 E-value=31 Score=24.87 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=7.8
Q ss_pred HHHHHHHHHcCCCCCCEE
Q psy15363 26 ANIQATAQALGLDQHRIL 43 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~ 43 (130)
..+++.++++|++.++|.
T Consensus 206 ~~~~~~l~~~G~~~~~i~ 223 (228)
T cd06209 206 DAVRSWLDEQGIEPANFY 223 (228)
T ss_pred HHHHHHHHHcCCCHHHEe
Confidence 334444444444433443
No 432
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=37.68 E-value=1e+02 Score=24.36 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=43.6
Q ss_pred HHHHHhhCCCcEEEEe-ecCcccHHHHHHHHHHcCCCC-CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHH-HHHH
Q psy15363 3 DIFVLKAVPNSILWLL-KFPAVGEANIQATAQALGLDQ-HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTS-MDVL 79 (130)
Q Consensus 3 w~~il~~~P~a~l~i~-g~~~~~~~~l~~~~~~~g~~~-~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~-lEAl 79 (130)
..+++.+.|...++.+ .......+.+.+.... +.. ....|.. .+.+++ ...+|+.+...|.+..... -++.
T Consensus 16 llr~L~~hP~~el~~l~~s~~sagk~~~~~~~~--l~~~~~~~~~~-~~~~~~---~~~~DvVf~alP~~~s~~~~~~~~ 89 (346)
T TIGR01850 16 LLRLLLNHPEVEITYLVSSRESAGKPVSEVHPH--LRGLVDLNLEP-IDEEEI---AEDADVVFLALPHGVSAELAPELL 89 (346)
T ss_pred HHHHHHcCCCceEEEEeccchhcCCChHHhCcc--ccccCCceeec-CCHHHh---hcCCCEEEECCCchHHHHHHHHHH
Confidence 3567778888888733 4321111122221111 110 0122332 222333 2479999877776654444 4455
Q ss_pred hcCCcEEecCCC
Q psy15363 80 WTGTPVVTLPGE 91 (130)
Q Consensus 80 a~G~PvV~~~g~ 91 (130)
..|+.||-..++
T Consensus 90 ~~G~~VIDlS~~ 101 (346)
T TIGR01850 90 AAGVKVIDLSAD 101 (346)
T ss_pred hCCCEEEeCChh
Confidence 789999988765
No 433
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=37.55 E-value=2.3e+02 Score=23.31 Aligned_cols=74 Identities=9% Similarity=0.004 Sum_probs=48.3
Q ss_pred cEEEEeecCc--ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCcEEec
Q psy15363 13 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~~--~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~PvV~~ 88 (130)
-.+-++|+.. .+...+++++++.|+. -...|.|..+.+++.. +..|.+-+-..+...+ .+.+.| -.|+|.+..
T Consensus 202 ~~VNiiG~~~~~gd~~el~~lL~~~Gi~-v~~~~~g~~t~~ei~~-~~~A~lnlv~~~~~~~-~~A~~Leer~GiP~~~~ 278 (461)
T TIGR01860 202 YTINVIGDYNIQGDTQVLQKYWDKMGIQ-VIAHFTGNGTYDDLRC-MHRAQLNVVNCARSAG-YIANELKKRYGIPRLDV 278 (461)
T ss_pred CcEEEECCCCCcccHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHh-cccCcEEEEECchHHH-HHHHHHHHHhCCCeecC
Confidence 4456667421 2356799999999996 5567888888888865 5566666543333222 245555 479999866
Q ss_pred C
Q psy15363 89 P 89 (130)
Q Consensus 89 ~ 89 (130)
+
T Consensus 279 ~ 279 (461)
T TIGR01860 279 D 279 (461)
T ss_pred C
Confidence 4
No 434
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=37.35 E-value=33 Score=24.56 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=16.8
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRIL 43 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~ 43 (130)
..+++.| +....+.+++.+.++|+++++|+
T Consensus 187 ~~vyiCG-p~~m~~~~~~~l~~~G~~~~~i~ 216 (218)
T cd06196 187 QHFYVCG-PPPMEEAINGALKELGVPEDSIV 216 (218)
T ss_pred CEEEEEC-CHHHHHHHHHHHHHcCCCHHHEe
Confidence 4444444 33445556666677777655554
No 435
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.95 E-value=82 Score=23.57 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=61.0
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHH-HHHHhhccccEE-EcCCC--CCCchHHHHHHhcCCcE
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKE-EHVRRGQLADVC-LDTPL--CNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~-~~~~~~~~~Dv~-l~~~~--~~~g~~~lEAla~G~Pv 85 (130)
|+-.+.++|.+|.++..|-+.+..+ ......|.|-|.--.. .... ++. .+. +..-+ .-...++.|-+..+...
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~-~~~-~i~~v~q~~~~~~~~~tv~enl~~~~~~ 111 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKE-IRK-KIGIIFQNPDNQFIGATVEDDIAFGLEN 111 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHH-Hhc-ceEEEEeCHHHhcCcccHHHHHHhHHHH
Confidence 5678889998888998888876633 2222567776642110 1111 111 222 22111 11235677777655321
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
...... ........+++.+|+.++... ....-+.+|..|+.+|+
T Consensus 112 ~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 112 KKVPPK-KMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred cCCCHH-HHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 111111 111224567777888765433 34555778888887764
No 436
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=36.79 E-value=74 Score=26.08 Aligned_cols=42 Identities=26% Similarity=0.195 Sum_probs=30.4
Q ss_pred CCCCch-----HHHHHHhcCCcEEecCCCc--hhhhhHHHHHHhcCCCC
Q psy15363 68 LCNGHT-----TSMDVLWTGTPVVTLPGET--LASRVAASQLATLGCPE 109 (130)
Q Consensus 68 ~~~~g~-----~~lEAla~G~PvV~~~g~~--~~~r~~~~~l~~~g~~~ 109 (130)
||+++. .+.-|+++|-+||..+++. .....-..++...|+|.
T Consensus 151 p~N~P~~~~~~~i~~ALaaGN~VvlKPs~~tp~~~~~l~~~~~~aglP~ 199 (477)
T cd07113 151 PWNFSVMIAVWKIGAALATGCTIVIKPSEFTPLTLLRVAELAKEAGIPD 199 (477)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHcCcCC
Confidence 666543 3569999999999987753 34444567778889985
No 437
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=36.76 E-value=1.5e+02 Score=20.85 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=16.7
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
.+|.++-.........+-++...|+|||+...
T Consensus 55 ~~d~iii~~~~~~~~~~~~~~~~~ipvv~~~~ 86 (264)
T cd06267 55 RVDGIILAPSRLDDELLEELAALGIPVVLVDR 86 (264)
T ss_pred CcCEEEEecCCcchHHHHHHHHcCCCEEEecc
Confidence 46666533322222225556677777777643
No 438
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=36.59 E-value=2.3e+02 Score=22.85 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=66.0
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecC-----C---CHHHHHHhhccccEE-EcCCC-CCCchHHHHHH
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNV-----A---AKEEHVRRGQLADVC-LDTPL-CNGHTTSMDVL 79 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~-----~---~~~~~~~~~~~~Dv~-l~~~~-~~~g~~~lEAl 79 (130)
++-.+.|+|.+|.++..|-+.+..+ .....+|.+-|. + +..++.. ++.-.+. +...+ .-...++.|-+
T Consensus 49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~-~r~~~i~~vfQ~~~l~p~~Tv~eNi 127 (382)
T TIGR03415 49 EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRR-LRTHRVSMVFQKFALMPWLTVEENV 127 (382)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHH-HhcCCEEEEECCCcCCCCCcHHHHH
Confidence 5667889998888999888877643 222367888773 1 2223322 2222222 32222 11235677777
Q ss_pred hcCCcEEecCCCch--hhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 80 WTGTPVVTLPGETL--ASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 80 a~G~PvV~~~g~~~--~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
+.|... .+... .......++..+|+.++... ....-+.+|..|+.||+
T Consensus 128 ~~~~~~---~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 128 AFGLEM---QGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred HHHHHh---cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 766431 12111 12234567888899876543 34567788888888875
No 439
>PRK07742 phosphate butyryltransferase; Validated
Probab=36.25 E-value=2e+02 Score=22.19 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=35.4
Q ss_pred HHhhCCCcEEEEeecCcccHHHHHHHHHHcCC-CCCCEEEecCCCHHH----HHHhhc--cccEEE
Q psy15363 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGL-DQHRILFSNVAAKEE----HVRRGQ--LADVCL 64 (130)
Q Consensus 6 il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~-~~~rv~f~g~~~~~~----~~~~~~--~~Dv~l 64 (130)
.+++.+ ++++++|. ++.+++.++++|+ +.+++.+...-+.++ -..+.+ .+|.++
T Consensus 35 a~~e~~-~~~iLvG~----~~~I~~~~~~~~l~~~~~~~Ii~~~~~~~s~~~a~~lV~~G~aD~lv 95 (299)
T PRK07742 35 AIELQL-ARFRLYGN----QEKIMGMLQEHGLQTSEHIEIIHAQSSAEAAELAVKAVRNGEADVLM 95 (299)
T ss_pred HHHcCC-ceEEEECC----HHHHHHHHHHCCCCCCCCcEEECCCCHHHHHHHHHHHHHCCCCCEEE
Confidence 344444 77888885 3578888888888 557788877654333 133444 689888
No 440
>PF13073 DUF3937: Protein of unknown function (DUF3937)
Probab=35.83 E-value=14 Score=22.27 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=17.3
Q ss_pred ChHHHHHhhCCCcEEEEeec
Q psy15363 1 MSDIFVLKAVPNSILWLLKF 20 (130)
Q Consensus 1 ~~w~~il~~~P~a~l~i~g~ 20 (130)
..|.-|+-..|+..|+++|.
T Consensus 44 e~Wktilld~P~gILVilGa 63 (73)
T PF13073_consen 44 EIWKTILLDAPEGILVILGA 63 (73)
T ss_pred hhHhHHhhcCCccchhhhhH
Confidence 36999999999999999983
No 441
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=35.56 E-value=1.6e+02 Score=24.12 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=37.1
Q ss_pred HhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC----------------HHHHHHhhccccEEEcC
Q psy15363 7 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA----------------KEEHVRRGQLADVCLDT 66 (130)
Q Consensus 7 l~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~----------------~~~~~~~~~~~Dv~l~~ 66 (130)
.....+.+.+++|- |..-+...+.+.+.|+ .+|++..+.. .+++..++..+||++.+
T Consensus 173 ~~~L~~~~vlvIGA-Gem~~lva~~L~~~g~--~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 173 FGSLKDKKVLVIGA-GEMGELVAKHLAEKGV--KKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISS 245 (414)
T ss_pred hcccccCeEEEEcc-cHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEe
Confidence 33345677889985 4433444555666676 4777766543 35677888899999754
No 442
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=35.53 E-value=40 Score=23.65 Aligned_cols=23 Identities=13% Similarity=0.446 Sum_probs=18.6
Q ss_pred chHHHHHHhcCCcEEecCCCchh
Q psy15363 72 HTTSMDVLWTGTPVVTLPGETLA 94 (130)
Q Consensus 72 g~~~lEAla~G~PvV~~~g~~~~ 94 (130)
-+.+.||...+.|+|...|....
T Consensus 76 ~~gl~~A~~~~~Pvl~i~g~~~~ 98 (162)
T cd07037 76 LPAVVEAYYSGVPLLVLTADRPP 98 (162)
T ss_pred hHHHHHHHhcCCCEEEEECCCCH
Confidence 45689999999999999776443
No 443
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=35.47 E-value=85 Score=27.01 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=34.1
Q ss_pred ccEEEcCCCCCCc-----hHHHHHHhcCCcEEecCCCc--hhhhhHHHHHHhcCCCC
Q psy15363 60 ADVCLDTPLCNGH-----TTSMDVLWTGTPVVTLPGET--LASRVAASQLATLGCPE 109 (130)
Q Consensus 60 ~Dv~l~~~~~~~g-----~~~lEAla~G~PvV~~~g~~--~~~r~~~~~l~~~g~~~ 109 (130)
.=|++.=.||+++ ..+.=|+++|-+||..+.+. ..+..-+.++...|+|+
T Consensus 250 ~GVV~~I~PwNfPl~l~~~~iapALaAGNtVVlKPSe~tp~ta~~l~~l~~eAGlP~ 306 (604)
T PLN02419 250 LGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVILAELAMEAGLPD 306 (604)
T ss_pred ccEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCcCc
Confidence 3444433455544 34667999999999998764 34555567788889985
No 444
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=35.35 E-value=64 Score=25.95 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=28.0
Q ss_pred ccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCc
Q psy15363 58 QLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 92 (130)
Q Consensus 58 ~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~ 92 (130)
..+|+.+...|.+.......+|..|++||-+.+++
T Consensus 103 ~~~DvVf~Alp~~~s~~i~~~~~~g~~VIDlSs~f 137 (381)
T PLN02968 103 SDVDAVFCCLPHGTTQEIIKALPKDLKIVDLSADF 137 (381)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHhCCCEEEEcCchh
Confidence 67899987777766677788888999999887653
No 445
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=35.30 E-value=1e+02 Score=19.68 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=30.2
Q ss_pred EEEEeecCccc-----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC
Q psy15363 14 ILWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP 67 (130)
Q Consensus 14 ~l~i~g~~~~~-----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~ 67 (130)
+++.+++.|-. +..+++.++++|++ -.+.-. ...+.......+|+++.+-
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~-~~~~~~---~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGID-VDVEQC---AVDEIKALTDGADIIVTST 57 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCC-ceeeeE---EecccccCCCcccEEEEeh
Confidence 44555544543 56889999999995 222111 1134445567789998654
No 446
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=35.29 E-value=96 Score=25.43 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=28.0
Q ss_pred HHHHHHhcCCcEEecCCCc--hhhhhHHHHHHhcCCCC
Q psy15363 74 TSMDVLWTGTPVVTLPGET--LASRVAASQLATLGCPE 109 (130)
Q Consensus 74 ~~lEAla~G~PvV~~~g~~--~~~r~~~~~l~~~g~~~ 109 (130)
.+.-|+++|-+||..+++. ..+..-+.++...|+|+
T Consensus 161 ~i~~ALaaGN~VV~KPs~~tp~~~~~l~~~~~~aGlP~ 198 (476)
T cd07142 161 KVGPALACGNTIVLKPAEQTPLSALLAAKLAAEAGLPD 198 (476)
T ss_pred HHHHHHHcCCEEEEECCCcccHHHHHHHHHHHHcCcCc
Confidence 4567999999999997764 45556677788889985
No 447
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=35.19 E-value=38 Score=26.01 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=23.8
Q ss_pred ChHHHHHhhC--CCcEEEEeecCcccHHHHHHHHHHcCCC
Q psy15363 1 MSDIFVLKAV--PNSILWLLKFPAVGEANIQATAQALGLD 38 (130)
Q Consensus 1 ~~w~~il~~~--P~a~l~i~g~~~~~~~~l~~~~~~~g~~ 38 (130)
+.|.+|.++. |+++++.+|+ |.++ ++.++.++.+
T Consensus 217 ~cFe~I~~Rfg~p~~~f~~IGD-G~eE---e~aAk~l~wP 252 (274)
T TIGR01658 217 QCFKWIKERFGHPKVRFCAIGD-GWEE---CTAAQAMNWP 252 (274)
T ss_pred HHHHHHHHHhCCCCceEEEeCC-ChhH---HHHHHhcCCC
Confidence 3577888776 6899999997 4443 3456676765
No 448
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=35.18 E-value=1.8e+02 Score=23.61 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=24.4
Q ss_pred HHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHH
Q psy15363 78 VLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDI 121 (130)
Q Consensus 78 Ala~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~ 121 (130)
|=..|+||+... .-.+-.+++++...+++.+ ++.++..+.
T Consensus 408 ADvlg~pV~~~~--~e~~a~GaA~~a~~~~G~~--~~~~~~~~~ 447 (454)
T TIGR02627 408 ADACGIRVIAGP--VEASTLGNIGVQLMALDEI--NDMAAFRQI 447 (454)
T ss_pred HHHhCCceEcCC--chHHHHHHHHHHHHhcCCc--CCHHHHHHH
Confidence 334599998654 2244578888887777643 345555443
No 449
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=34.98 E-value=2.3e+02 Score=22.40 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=66.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEE-EcCCC-CCCchHHHHHHhcCCcEEe
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPL-CNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~-~~~g~~~lEAla~G~PvV~ 87 (130)
++-.+.++|.+|.++..|-+.+.-+ ..+..+|.|-|.--. .... . .-.+. +...+ .-...++.|=++.+....-
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~-~~~~-~-~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~ 103 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS-RLHA-R-DRKVGFVFQHYALFRHMTVFDNIAFGLTVLP 103 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC-CCCH-H-HCCEEEEecCcccCCCCcHHHHHHhhhhhcc
Confidence 5678889998888899888877643 223357888764210 0000 0 11232 22221 1224678888888765321
Q ss_pred c-CCCc--hhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 88 L-PGET--LASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 88 ~-~g~~--~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
. .+.. ...+....+++.+|++++... ....-+++|..|+.+|+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 104 RRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 0111 112234577888899865443 34667888888888874
No 450
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=34.97 E-value=2.3e+02 Score=22.39 Aligned_cols=110 Identities=11% Similarity=-0.043 Sum_probs=61.3
Q ss_pred CCcEEEEeecC-c---ccHHHHHHHHHHcCCCCCCEEEecCCCH------HHHHHhhc--cccEEEcCCCCCCc--hHHH
Q psy15363 11 PNSILWLLKFP-A---VGEANIQATAQALGLDQHRILFSNVAAK------EEHVRRGQ--LADVCLDTPLCNGH--TTSM 76 (130)
Q Consensus 11 P~a~l~i~g~~-~---~~~~~l~~~~~~~g~~~~rv~f~g~~~~------~~~~~~~~--~~Dv~l~~~~~~~g--~~~l 76 (130)
++.++++...+ + ...+.+.+.+++.|..-+.+..--..+. ++....+. ..|+.+.+|+.+-- ...+
T Consensus 141 ~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~~~~d~v~FtS~stv~~f~~~l 220 (381)
T PRK07239 141 AGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIASRGLDAVTFTSAPAVAALLERA 220 (381)
T ss_pred CCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHcCCccEEEEcCHHHHHHHHHHH
Confidence 55565554321 1 2235788889999976555444333321 24445454 47999877764310 0111
Q ss_pred ----------HHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 77 ----------DVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 77 ----------EAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
+++..++.+++.. ..++.-+...|+...+++ +.+++++...+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~i~aIG------p~Ta~al~~~G~~~~vp~~~t~~~Lv~~i~~~~ 276 (381)
T PRK07239 221 REMGLLDQLLAALRTDVLAACVG------PVTAAPLVRAGVPTSAPERMRLGALARHITEEL 276 (381)
T ss_pred HHcCChHHHHHhhccCCEEEEEC------HHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHh
Confidence 1223455666643 457778888888765553 6677777665543
No 451
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.67 E-value=1.7e+02 Score=20.88 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=60.0
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~ 88 (130)
|+-++.++|.+|.++..|-+.+.-. .....+|.|-|.-.... ...++..=.|+..-+ .-...++.|-+..+.-.-..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 103 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGV 103 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCC
Confidence 6778889998888999888877632 22225687766421100 011111111222212 12234566655543211000
Q ss_pred CCCchhhhhHHHHHHhcCCCCcee-------cCHHHHHHHHHHhccCCC
Q psy15363 89 PGETLASRVAASQLATLGCPELIA-------RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~~g~~~~va-------~~~~~y~~~a~~l~~d~e 130 (130)
.... .......++..+|++++.. .....-+.+|..|+.+|+
T Consensus 104 ~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 104 PGAE-RRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred CHHH-HHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0010 1112356778888876433 234566778888887774
No 452
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=34.66 E-value=1.4e+02 Score=23.05 Aligned_cols=75 Identities=15% Similarity=0.022 Sum_probs=44.1
Q ss_pred HHHHHhhcc-cc-EEEc-CCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCH-------HHHHH
Q psy15363 51 EEHVRRGQL-AD-VCLD-TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTH-------KEYQD 120 (130)
Q Consensus 51 ~~~~~~~~~-~D-v~l~-~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~-------~~y~~ 120 (130)
.++...+.. +| |++| |.|...-..+--+...|+|+|.-....-..+. ..+.+..+.+-+++.+. ..+++
T Consensus 59 ~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~-~~l~~~~~i~~l~apNfSiGv~ll~~~~~ 137 (275)
T TIGR02130 59 ARIGEVFAKYPELICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREAL-AKLVADAKHPAVIAPNMAKQIVAFLAAIE 137 (275)
T ss_pred ccHHHHHhhcCCEEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHH-HHHHHhcCCCEEEECcccHHHHHHHHHHH
Confidence 344445555 89 8888 45655444467788899998865433333333 33444456777888764 34445
Q ss_pred HHHHhc
Q psy15363 121 IAIRLG 126 (130)
Q Consensus 121 ~a~~l~ 126 (130)
.+.++.
T Consensus 138 ~aA~~~ 143 (275)
T TIGR02130 138 FLAEEF 143 (275)
T ss_pred HHHHhh
Confidence 554444
No 453
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=34.64 E-value=1.8e+02 Score=21.84 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=24.2
Q ss_pred ccccEEEcCCCC-CCchHHHHHHhcCCcEEecCC
Q psy15363 58 QLADVCLDTPLC-NGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 58 ~~~Dv~l~~~~~-~~g~~~lEAla~G~PvV~~~g 90 (130)
...|++++..+- ..--...+++..|++|++...
T Consensus 60 ~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s~ 93 (265)
T PRK13303 60 QRPDLVVECAGHAALKEHVVPILKAGIDCAVISV 93 (265)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeCh
Confidence 458999876543 234568899999999998643
No 454
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=34.56 E-value=1e+02 Score=24.23 Aligned_cols=76 Identities=11% Similarity=-0.016 Sum_probs=39.1
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC---HHHHHHhhccccEEEcCCCCCCchHHHH-HHhcCCcEEecC
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---KEEHVRRGQLADVCLDTPLCNGHTTSMD-VLWTGTPVVTLP 89 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~---~~~~~~~~~~~Dv~l~~~~~~~g~~~lE-Ala~G~PvV~~~ 89 (130)
+..|+|..|..-..|.+++..|.-- .+.++..-+ ..+.......+|+.+...|.+-.....+ +...|+.||=+.
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~--el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlS 80 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDI--ELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLVDNPNTCIIDAS 80 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCe--EEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECC
Confidence 3456665444445566666655311 233332111 1122234467888766666554333333 446788888776
Q ss_pred CC
Q psy15363 90 GE 91 (130)
Q Consensus 90 g~ 91 (130)
++
T Consensus 81 ad 82 (310)
T TIGR01851 81 TA 82 (310)
T ss_pred hH
Confidence 65
No 455
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=34.52 E-value=1.7e+02 Score=20.67 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=36.1
Q ss_pred EEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCc
Q psy15363 42 ILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 92 (130)
Q Consensus 42 v~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~ 92 (130)
.+..|+.-.+++..+.+.+.+.+ ++ .|--+++.++..++|.|..+...
T Consensus 48 l~v~~F~~~~kiQsli~darIVI--SH-aG~GSIL~~~rl~kplIv~pr~s 95 (161)
T COG5017 48 LRVYGFDKEEKIQSLIHDARIVI--SH-AGEGSILLLLRLDKPLIVVPRSS 95 (161)
T ss_pred cEEEeechHHHHHHHhhcceEEE--ec-cCcchHHHHhhcCCcEEEEECch
Confidence 45667776778888888888877 33 34446999999999998887654
No 456
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=34.33 E-value=1.8e+02 Score=21.07 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=31.2
Q ss_pred CCcEEEEeecCcccHH--HHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEc
Q psy15363 11 PNSILWLLKFPAVGEA--NIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 65 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~--~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~ 65 (130)
|+-.++++..+|..++ ...+.+++.|+ .-|.+++. +...+..+...+|+.+.
T Consensus 109 ~gDvli~iS~SG~s~~v~~a~~~Ak~~G~--~vI~IT~~-~~s~l~~l~~~~D~~i~ 162 (196)
T PRK10886 109 AGDVLLAISTRGNSRDIVKAVEAAVTRDM--TIVALTGY-DGGELAGLLGPQDVEIR 162 (196)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCC--EEEEEeCC-CCChhhhccccCCEEEE
Confidence 5566666665444433 34466788886 34555554 44456666667899874
No 457
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=34.32 E-value=1.7e+02 Score=20.70 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=61.5
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~ 88 (130)
|+-++.++|.+|.++..|-+.+... .....+|.+-|..... ....++.--.|+...+ .....++.|-+....+.-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-- 101 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDF-QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH-- 101 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc-ccHHhhhheEEeccccccCCCcCHHHHHHhhcccc--
Confidence 6678889998888898888876633 2223567776643211 1111222122332222 222456777776643311
Q ss_pred CCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 89 PGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
..+....+++.+|+.++... +...-+..|..|+.+|+
T Consensus 102 -----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 102 -----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred -----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 12234567777888754332 34566777888877764
No 458
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=34.31 E-value=34 Score=24.23 Aligned_cols=9 Identities=44% Similarity=0.309 Sum_probs=3.8
Q ss_pred hCCCcEEEE
Q psy15363 9 AVPNSILWL 17 (130)
Q Consensus 9 ~~P~a~l~i 17 (130)
+.++.++.+
T Consensus 152 ~~~~~~~~~ 160 (223)
T cd00322 152 EGPNFRLVL 160 (223)
T ss_pred hCCCeEEEE
Confidence 344444443
No 459
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=34.22 E-value=1.5e+02 Score=23.83 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=27.4
Q ss_pred HHHHHHhcCCcEEecCCCc--hhhhhHHHHHHhcCCCC
Q psy15363 74 TSMDVLWTGTPVVTLPGET--LASRVAASQLATLGCPE 109 (130)
Q Consensus 74 ~~lEAla~G~PvV~~~g~~--~~~r~~~~~l~~~g~~~ 109 (130)
.++=|+++|-+||..+++. ..+..-..++...|+|+
T Consensus 118 ~~~~ALaaGN~VVlKps~~~p~~~~~l~~~~~~aGlP~ 155 (432)
T cd07105 118 AIAYPLAAGNTVVLKASELSPRTHWLIGRVFHEAGLPK 155 (432)
T ss_pred HHHHHHhcCCEEEEECCccChHHHHHHHHHHHHcCcCC
Confidence 4789999999999987764 34445566777789985
No 460
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=34.15 E-value=1.7e+02 Score=23.23 Aligned_cols=66 Identities=5% Similarity=-0.165 Sum_probs=40.8
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhc
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWT 81 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~ 81 (130)
-++.|+|+.|..-..+...+++.|. .|...++-+.++.......||+++-+-|...-..+++.++-
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~---~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~ 164 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY---QVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP 164 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC---eEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC
Confidence 4677888334545567777777774 47766654444445566789999877665543444444433
No 461
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=34.15 E-value=47 Score=27.35 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=38.0
Q ss_pred HHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHhcCC----c--EEecCCCch
Q psy15363 32 AQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLWTGT----P--VVTLPGETL 93 (130)
Q Consensus 32 ~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla~G~----P--vV~~~g~~~ 93 (130)
++-.|+. +-|.++++-+..-....+..|+++ ++...--||.-.+-||+.|+ | .|+-+|..+
T Consensus 141 AkvAGV~-~Iv~~TPp~~~~i~p~iL~Aa~~~Gv~eIy~vGGAQAIAAlAyGTetIp~VDkIvGPGN~y 208 (426)
T PRK12447 141 AKVAGVK-RVIACTPPFPGEPPPAIVAAMHLAGADEIYVLGGVQAVAAMAYGTETIKPVDMLVGPGNAY 208 (426)
T ss_pred hhhcCCC-eEEEEeCCCCCCCCHHHHHHHHHcCCCeehhcCCHHHHHHHHcCCCCCCCCcEEECCCcHH
Confidence 5677996 667777763211123334455555 55444568889999999998 3 355566544
No 462
>KOG0830|consensus
Probab=34.15 E-value=2.1e+02 Score=21.82 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=50.7
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe-cCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~-g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
+|.-. .+++....++..+-+++...|..+=-=+|+ |... ..+.+.++.=-+.+-|=|..-.-.+.|+-.+++|||++
T Consensus 41 np~dv-~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ft-n~iq~~f~epr~lvvtdpr~d~q~~~E~s~~n~p~ial 118 (254)
T KOG0830|consen 41 NPADV-SVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFT-NQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIAL 118 (254)
T ss_pred Cccce-EEEccCCcchhHHHHHHHhhCCCcccccccccccc-hHHHHhhcCCceeeecCcccccchhhhhhhcCCceEEE
Confidence 45333 344443456667777888878654333444 3333 34566777777777666666667789999999999987
Q ss_pred C
Q psy15363 89 P 89 (130)
Q Consensus 89 ~ 89 (130)
-
T Consensus 119 c 119 (254)
T KOG0830|consen 119 C 119 (254)
T ss_pred e
Confidence 3
No 463
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=34.14 E-value=2e+02 Score=24.94 Aligned_cols=112 Identities=12% Similarity=0.050 Sum_probs=61.4
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHH-HhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHV-RRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~-~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
|+-++.++|.+|.++..+-+++..+ .....+|.+-| .+-.++. ..++..=-++.--|+-+..|+-|=+.+|.|-...
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg-~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~ 584 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG-VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD 584 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC-EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCH
Confidence 6788899998888999888876543 33334666655 3433221 1122211223222333446789999999874431
Q ss_pred CCCchhhhhHHHHHHhcCCCCce------------------ecCHHHHHHHHHHhccCCC
Q psy15363 89 PGETLASRVAASQLATLGCPELI------------------ARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~~g~~~~v------------------a~~~~~y~~~a~~l~~d~e 130 (130)
.++ ...++..|+.+++ ......-+++|-.+++||+
T Consensus 585 ------e~i-~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ 637 (711)
T TIGR00958 585 ------EEI-MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPR 637 (711)
T ss_pred ------HHH-HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 111 1123333333322 2235667788888888774
No 464
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=34.10 E-value=2.5e+02 Score=22.66 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=17.3
Q ss_pred ccccEEEcCCCCC-CchHHHHHHhcCCcEEe
Q psy15363 58 QLADVCLDTPLCN-GHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 58 ~~~Dv~l~~~~~~-~g~~~lEAla~G~PvV~ 87 (130)
..+|+++-+.... ..-.+.+|...|+||+.
T Consensus 57 ~~~d~vV~spgi~~~~p~~~~a~~~~i~v~~ 87 (448)
T TIGR01082 57 DDADVVVVSAAIKDDNPEIVEAKERGIPVIR 87 (448)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHcCCceEe
Confidence 3578776554222 22346667777777764
No 465
>PRK11579 putative oxidoreductase; Provisional
Probab=34.07 E-value=1.3e+02 Score=23.29 Aligned_cols=73 Identities=11% Similarity=0.047 Sum_probs=41.0
Q ss_pred HHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC-CCCCchHHHHHHhcCC
Q psy15363 5 FVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGT 83 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G~ 83 (130)
..+++.|++.++-+.+. ..++.+ ++.+. +.+ +-+.+++++- ...|++.-+. +....-.+.+|+..|+
T Consensus 22 ~~~~~~~~~~l~av~d~--~~~~~~---~~~~~----~~~--~~~~~ell~~-~~vD~V~I~tp~~~H~~~~~~al~aGk 89 (346)
T PRK11579 22 PLIAGTPGLELAAVSSS--DATKVK---ADWPT----VTV--VSEPQHLFND-PNIDLIVIPTPNDTHFPLAKAALEAGK 89 (346)
T ss_pred HHHhhCCCCEEEEEECC--CHHHHH---hhCCC----Cce--eCCHHHHhcC-CCCCEEEEcCCcHHHHHHHHHHHHCCC
Confidence 34556788888777653 222221 22221 111 1234554321 2478885444 4455667899999999
Q ss_pred cEEecC
Q psy15363 84 PVVTLP 89 (130)
Q Consensus 84 PvV~~~ 89 (130)
+|++-+
T Consensus 90 hVl~EK 95 (346)
T PRK11579 90 HVVVDK 95 (346)
T ss_pred eEEEeC
Confidence 999854
No 466
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.05 E-value=1.9e+02 Score=21.26 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=33.5
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCC-CchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~-~g~~~lEAla~ 81 (130)
..++.+++|+ .++-+|. -...+..+ .+.+.|. ++...+..+. +....-+..++.+ .|-. ..+-+.+|+.+
T Consensus 57 I~~l~~~~p~-~~IGAGT-Vl~~~~a~-~a~~aGA---~FivsP~~~~-~vi~~a~~~~i~~--iPG~~TptEi~~a~~~ 127 (212)
T PRK05718 57 IRLIAKEVPE-ALIGAGT-VLNPEQLA-QAIEAGA---QFIVSPGLTP-PLLKAAQEGPIPL--IPGVSTPSELMLGMEL 127 (212)
T ss_pred HHHHHHHCCC-CEEEEee-ccCHHHHH-HHHHcCC---CEEECCCCCH-HHHHHHHHcCCCE--eCCCCCHHHHHHHHHC
Confidence 4566677886 3234443 12223322 2344453 3444444444 3333333333332 2211 12225556666
Q ss_pred CCcEEec
Q psy15363 82 GTPVVTL 88 (130)
Q Consensus 82 G~PvV~~ 88 (130)
|..+|-.
T Consensus 128 Ga~~vKl 134 (212)
T PRK05718 128 GLRTFKF 134 (212)
T ss_pred CCCEEEE
Confidence 6666644
No 467
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=34.04 E-value=64 Score=21.26 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=31.0
Q ss_pred CCcEEEEeecCcc---cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc
Q psy15363 11 PNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 59 (130)
Q Consensus 11 P~a~l~i~g~~~~---~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~ 59 (130)
|..-++.+|+... +....++.+++.|+.-.-+.|....+.+++...+..
T Consensus 30 P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ 81 (117)
T PF00763_consen 30 PKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEK 81 (117)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHH
T ss_pred cEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHH
Confidence 7777777885322 345667889999998566777777787777666544
No 468
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=34.03 E-value=60 Score=23.74 Aligned_cols=30 Identities=7% Similarity=0.071 Sum_probs=23.4
Q ss_pred ccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 60 ADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 60 ~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
-|+++-.-|......+-||.-+|+|+|+.-
T Consensus 144 P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~ 173 (211)
T PF00318_consen 144 PDLVIILDPNKNKNAIREANKLNIPTIAIV 173 (211)
T ss_dssp BSEEEESSTTTTHHHHHHHHHTTS-EEEEE
T ss_pred CcEEEEecccccchhHHHHHhcCceEEEee
Confidence 577765556667889999999999999883
No 469
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=34.02 E-value=1.5e+02 Score=22.86 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=36.5
Q ss_pred HhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH-HHH---HHhhc--cccEEEc
Q psy15363 7 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK-EEH---VRRGQ--LADVCLD 65 (130)
Q Consensus 7 l~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~-~~~---~~~~~--~~Dv~l~ 65 (130)
+.+.+..+.+++|. ++.+++.++++|++.+++.+...-+. +.+ ..+.+ .+|.++.
T Consensus 33 ~~~~~~~~~iLvG~----~~~I~~~~~~~~l~~~~ieIi~~~~~~~s~~~a~~lv~~G~aD~~vs 93 (294)
T TIGR02706 33 AKEHGIARAILVGD----EEKINEIAKKIGMNLDDVEIVNAPSPKKAALLAVRLVSTGKADMLMK 93 (294)
T ss_pred HHHCCCceEEEECC----HHHHHHHHHHcCCCccCcEEECCCCcHHHHHHHHHHHHCCCCCEEEe
Confidence 44556688888885 35688888888887678888776432 222 33343 6898883
No 470
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=34.00 E-value=1.5e+02 Score=23.35 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=25.3
Q ss_pred ccccEEEcCCCCCC-chHHHHHHhcCCcEEecCCCc
Q psy15363 58 QLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGET 92 (130)
Q Consensus 58 ~~~Dv~l~~~~~~~-g~~~lEAla~G~PvV~~~g~~ 92 (130)
..+|+++...|.+. ...+.+++..|++||-..+.+
T Consensus 67 ~~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 67 AGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCccc
Confidence 56899876666543 445666668899999988764
No 471
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=33.89 E-value=2.3e+02 Score=22.16 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHH-HHHhcCCcEEecCCCchh---hhhHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSM-DVLWTGTPVVTLPGETLA---SRVAA 99 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~l-EAla~G~PvV~~~g~~~~---~r~~~ 99 (130)
.+.|++.-+++|+. +.+.-.+.++.......+||+ +-.+..-. +.++ ++-..|+||...+|-+.. =...+
T Consensus 76 L~iL~~vk~~~glp----vvTeV~~~~q~~~vae~~DilQIgAr~~rq-tdLL~a~~~tgkpV~lKkGq~~t~~e~~~aa 150 (290)
T PLN03033 76 LKILEKVKVAYDLP----IVTDVHESSQCEAVGKVADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQFCAPSVMRNSA 150 (290)
T ss_pred HHHHHHHHHHHCCc----eEEeeCCHHHHHHHHhhCcEEeeCcHHHHH-HHHHHHHHccCCeEEeCCCCCCCHHHHHHHH
Confidence 34677777888986 344444556666666678998 65554322 4444 445689999999886542 12345
Q ss_pred HHHHhcCCCCc
Q psy15363 100 SQLATLGCPEL 110 (130)
Q Consensus 100 ~~l~~~g~~~~ 110 (130)
.-+...|.+.+
T Consensus 151 eki~~~GN~~v 161 (290)
T PLN03033 151 EKVRLAGNPNV 161 (290)
T ss_pred HHHHHcCCCcE
Confidence 55666677763
No 472
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=33.88 E-value=1.8e+02 Score=20.89 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=62.4
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCC-HHHHHHhhccccE-EEcCCC-CCCchHHHHHHhcCCcEE
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAA-KEEHVRRGQLADV-CLDTPL-CNGHTTSMDVLWTGTPVV 86 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~-~~~~~~~~~~~Dv-~l~~~~-~~~g~~~lEAla~G~PvV 86 (130)
|+-.+.++|.+|.++..|-+.+.-. .....+|.+-|.-. ........+ ..+ |+...+ .-.+.++.|-+..+.+.-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 103 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR-LGIGYLPQEASIFRKLTVEENILAVLEIR 103 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh-ccEEEecCCccccccCcHHHHHHHHHHhc
Confidence 6778889998888999888877632 22235777766421 100001111 122 232222 122356677666543321
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
... ..........++..+|+.+.... ....-+.+|..|+.+|+
T Consensus 104 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 104 GLS-KKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred CCC-HHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 111 11111223567788888764433 34566788888887764
No 473
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=33.77 E-value=1.1e+02 Score=24.75 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCC-CCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCc--hHHHHHHhcCCcEEe
Q psy15363 26 ANIQATAQALGL-DQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGH--TTSMDVLWTGTPVVT 87 (130)
Q Consensus 26 ~~l~~~~~~~g~-~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g--~~~lEAla~G~PvV~ 87 (130)
+....++.++.+ ...+..|.|+.+-.++++.+ .|+++ +..|+.+ -...|||+-|=|.|-
T Consensus 238 ~~F~~f~~~ldlvr~gkasfegR~~~p~fla~~--tD~Vv-SHqWeN~lNYlY~daLyggYPLVH 299 (364)
T PF10933_consen 238 PTFVNFANSLDLVRDGKASFEGRFDFPDFLAQH--TDAVV-SHQWENPLNYLYYDALYGGYPLVH 299 (364)
T ss_pred HHHHHHHHhhHHhhcCeeEEeeecChHHHHHhC--CCEEE-eccccchhhHHHHHHHhcCCCccc
Confidence 456666776665 34689999999988887744 79999 4444433 468999999999995
No 474
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=33.76 E-value=1.7e+02 Score=23.40 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=47.2
Q ss_pred cEEEEeecCc--ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCcEEec
Q psy15363 13 SILWLLKFPA--VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~~--~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~PvV~~ 88 (130)
-.+-|+|+.. .+...+++++++.|+. -+..|.+..+.+++.. +..|.+-+-..+.. +.-+.+.| -.|+|.+..
T Consensus 159 ~~VNiig~~~~~~d~~el~~lL~~~Gl~-v~~~~~~~~s~eei~~-~~~A~lniv~~~~~-~~~~a~~L~~~fGip~~~~ 235 (410)
T cd01968 159 YDINLIGEFNVAGELWGVKPLLEKLGIR-VLASITGDSRVDEIRR-AHRAKLNVVQCSKS-MIYLARKMEEKYGIPYIEV 235 (410)
T ss_pred CcEEEECCCCCcccHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHh-hhhCcEEEEEchhH-HHHHHHHHHHHhCCCeEec
Confidence 4566777321 2346899999999996 5667888778888865 45666665333322 23345555 479998864
No 475
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=33.68 E-value=51 Score=24.09 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=24.1
Q ss_pred CcEEEEeecCcccHHHHHHHHHH-cCCCCCCEEEecC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNV 47 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~-~g~~~~rv~f~g~ 47 (130)
+..+++.|. ....+.+++.+++ .|+..+||++-|+
T Consensus 198 ~~~vyicGp-~~mv~~v~~~l~~~~g~~~~~i~~~~y 233 (235)
T cd06193 198 DGYVWIAGE-AGAVRALRRHLREERGVPRAQVYASGY 233 (235)
T ss_pred CeEEEEEcc-HHHHHHHHHHHHHccCCCHHHEEEEEe
Confidence 356666664 4556677777765 5988788888764
No 476
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=33.52 E-value=2.6e+02 Score=22.72 Aligned_cols=83 Identities=17% Similarity=0.051 Sum_probs=47.2
Q ss_pred EEEEeecC-cccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc-ccEEEcCCCCCCchHHHHHHhcCCcEEecCCC
Q psy15363 14 ILWLLKFP-AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 14 ~l~i~g~~-~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~-~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
.+.+.|.- ..+...+++++++.|+. -++.|.|. +.+++...-+. +-+.+ .++.+....+| .-.|+|.+. +.
T Consensus 167 ~vnl~G~~~~gd~~eik~lL~~~Gi~-~~~~~~G~-~~~ei~~a~~A~~~i~l--~~~~~~a~~l~-~~~GvP~~~--~~ 239 (422)
T TIGR02015 167 TLVLLGEIFPVDAMVIGGVLQPIGVE-SGPTVPGR-DWRELYAALDSSAVAVL--HPFYEATARLF-EAAGVKIVG--SA 239 (422)
T ss_pred ceeeecCCCcccHHHHHHHHHHcCCC-eEEecCCC-CHHHHHhhhcCeEEEEe--CccchHHHHHH-HHcCCceec--cC
Confidence 33455521 12457899999999996 55666554 77887654432 34445 34443333333 379999764 33
Q ss_pred chhhhhHHHHHH
Q psy15363 92 TLASRVAASQLA 103 (130)
Q Consensus 92 ~~~~r~~~~~l~ 103 (130)
.+--+-+..+++
T Consensus 240 PiG~~~Td~fL~ 251 (422)
T TIGR02015 240 PVGANGTGEWLE 251 (422)
T ss_pred CCChHHHHHHHH
Confidence 343334444443
No 477
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=33.47 E-value=68 Score=23.32 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=22.2
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCC------CCEEE
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQ------HRILF 44 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~------~rv~f 44 (130)
+..+++.| +......+++.++++|+.+ ++|++
T Consensus 201 ~~~vyiCG-p~~m~~~~~~~l~~~G~~~~~~~~~~~~~~ 238 (241)
T cd06195 201 TSHVMLCG-NPQMIDDTQELLKEKGFSKNHRRKPGNITV 238 (241)
T ss_pred cCEEEEeC-CHHHHHHHHHHHHHcCCCccccCCCceEEE
Confidence 35566666 3455667788888899987 66665
No 478
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=33.40 E-value=3.4e+02 Score=23.97 Aligned_cols=70 Identities=10% Similarity=0.103 Sum_probs=34.5
Q ss_pred EEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH---HHHH------------HhhccccEEEcCCCCC-CchHHHHH
Q psy15363 15 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK---EEHV------------RRGQLADVCLDTPLCN-GHTTSMDV 78 (130)
Q Consensus 15 l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~---~~~~------------~~~~~~Dv~l~~~~~~-~g~~~lEA 78 (130)
+.++|-++.+...|.+++.++|. +|.....-+. .++. ..+..+|+++-+.... ..-.+.+|
T Consensus 7 i~viG~G~sG~salA~~L~~~G~---~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a 83 (809)
T PRK14573 7 YHFIGIGGIGMSALAHILLDRGY---SVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSA 83 (809)
T ss_pred EEEEEecHHhHHHHHHHHHHCCC---eEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHH
Confidence 45666545666666777777774 2333332111 1111 1134578886554221 12235556
Q ss_pred HhcCCcEEe
Q psy15363 79 LWTGTPVVT 87 (130)
Q Consensus 79 la~G~PvV~ 87 (130)
...|+||+.
T Consensus 84 ~~~gi~v~~ 92 (809)
T PRK14573 84 KSRGNRLVH 92 (809)
T ss_pred HHCCCcEEe
Confidence 666666654
No 479
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=33.29 E-value=1.1e+02 Score=18.38 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=17.4
Q ss_pred HHhhCCCcEEEEeecCccc-HHHHHHHHHHcCCCCCCEEE
Q psy15363 6 VLKAVPNSILWLLKFPAVG-EANIQATAQALGLDQHRILF 44 (130)
Q Consensus 6 il~~~P~a~l~i~g~~~~~-~~~l~~~~~~~g~~~~rv~f 44 (130)
++++.|+..| +-|+.... .....+++++.|+. .+.|
T Consensus 27 ~~~~~~~~~l-vhGga~~GaD~iA~~wA~~~gv~--~~~~ 63 (71)
T PF10686_consen 27 VHARHPDMVL-VHGGAPKGADRIAARWARERGVP--VIRF 63 (71)
T ss_pred HHHhCCCEEE-EECCCCCCHHHHHHHHHHHCCCe--eEEe
Confidence 4566666553 33322122 23344567777763 4444
No 480
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=33.20 E-value=42 Score=24.09 Aligned_cols=29 Identities=10% Similarity=0.291 Sum_probs=14.0
Q ss_pred EEEEeecCcccHH-HHHHHHHHcCCCCCCEE
Q psy15363 14 ILWLLKFPAVGEA-NIQATAQALGLDQHRIL 43 (130)
Q Consensus 14 ~l~i~g~~~~~~~-~l~~~~~~~g~~~~rv~ 43 (130)
.+++.| +....+ .+++.++++|+++++|+
T Consensus 203 ~~~icG-p~~~~~~~~~~~l~~~G~~~~~i~ 232 (234)
T cd06183 203 LVLVCG-PPPMIEGAVKGLLKELGYKKDNVF 232 (234)
T ss_pred EEEEEC-CHHHHHHHHHHHHHHcCCCHHHEE
Confidence 344444 223344 55555566666544443
No 481
>PRK13770 histidinol dehydrogenase; Provisional
Probab=33.11 E-value=54 Score=26.89 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=37.9
Q ss_pred HHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHhcCC----c--EEecCCCch
Q psy15363 32 AQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLWTGT----P--VVTLPGETL 93 (130)
Q Consensus 32 ~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla~G~----P--vV~~~g~~~ 93 (130)
++-.|+. +-|..+++.+..-....+..|++. ++...--||.-.+-||+.|+ | .|+-+|..+
T Consensus 136 AkvAGV~-~Iv~~TPp~~~~i~p~iL~Aa~~~Gv~eIy~iGGAQAIAAlAyGTetIp~VDkIvGPGN~y 203 (416)
T PRK13770 136 AQVAGVE-NIVVVTPPQPNGVSQEVLAACYITQVNQVFQVGGAQSIAALTYGTETIPKVDKIVGPGNQF 203 (416)
T ss_pred HhhcCCC-eEEEEeCcCCCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCCCCCCcEEECCCcHH
Confidence 5677996 667777763211123334455555 55554568899999999998 3 355566544
No 482
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=33.02 E-value=1.8e+02 Score=20.69 Aligned_cols=62 Identities=19% Similarity=0.071 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHH---HHHHhh--ccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKE---EHVRRG--QLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~---~~~~~~--~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
...+++.++++|.. =+++...-+.+ +....+ +.+|.++-..+. ......+++..|+|||+..
T Consensus 18 ~~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~-~~~~~~~~~~~~ipvv~~~ 84 (267)
T cd06284 18 LKGIEDEAREAGYG--VLLGDTRSDPEREQEYLDLLRRKQADGIILLDGS-LPPTALTALAKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHcCCe--EEEecCCCChHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHhcCCCEEEEe
Confidence 35677778888864 22333322322 222222 247866432222 1223567777899999764
No 483
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=32.93 E-value=35 Score=24.75 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=17.2
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILF 44 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f 44 (130)
..+++.| +...-..+++.+++.|+++++|+.
T Consensus 207 ~~v~icG-p~~mv~~v~~~l~~~G~~~~~i~~ 237 (241)
T cd06214 207 DEAFLCG-PEPMMDAVEAALLELGVPAERIHR 237 (241)
T ss_pred cEEEEEC-CHHHHHHHHHHHHHcCCCHHHeec
Confidence 4455555 333445566666667776555553
No 484
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=32.92 E-value=25 Score=16.65 Aligned_cols=12 Identities=25% Similarity=0.185 Sum_probs=9.4
Q ss_pred hHHHHHhhCCCc
Q psy15363 2 SDIFVLKAVPNS 13 (130)
Q Consensus 2 ~w~~il~~~P~a 13 (130)
.|.++++++|++
T Consensus 22 ~~~~~~~~~P~s 33 (33)
T PF13174_consen 22 YFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHSTTS
T ss_pred HHHHHHHHCcCC
Confidence 577888888875
No 485
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=32.91 E-value=1.9e+02 Score=20.82 Aligned_cols=9 Identities=33% Similarity=0.135 Sum_probs=4.1
Q ss_pred HHHHHhhCC
Q psy15363 3 DIFVLKAVP 11 (130)
Q Consensus 3 w~~il~~~P 11 (130)
|.+.++..+
T Consensus 145 f~~~l~~~~ 153 (272)
T cd06301 145 VEEVLAKYP 153 (272)
T ss_pred HHHHHHHCC
Confidence 344444444
No 486
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=32.80 E-value=1.2e+02 Score=23.38 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=37.5
Q ss_pred ccEEEcCCCCCCchHHHH-HHhcCCcEEecCCCch-hhhh----HHHHHHh------cCCCCceecCHHHHHHHHHHhcc
Q psy15363 60 ADVCLDTPLCNGHTTSMD-VLWTGTPVVTLPGETL-ASRV----AASQLAT------LGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 60 ~Dv~l~~~~~~~g~~~lE-Ala~G~PvV~~~g~~~-~~r~----~~~~l~~------~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
+||.=..++... -+--+ --+||+|||...|... ..|. ....+.. .|-+-|..++++.++....+..-
T Consensus 180 ADIiK~~ytg~~-e~F~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivh 258 (265)
T COG1830 180 ADIIKTKYTGDP-ESFRRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVH 258 (265)
T ss_pred CCeEeecCCCCh-HHHHHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhc
Confidence 888843443211 11111 1368899999977654 2332 2222322 34556888888887766665544
Q ss_pred C
Q psy15363 128 D 128 (130)
Q Consensus 128 d 128 (130)
+
T Consensus 259 e 259 (265)
T COG1830 259 E 259 (265)
T ss_pred C
Confidence 3
No 487
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=32.77 E-value=2.4e+02 Score=22.11 Aligned_cols=111 Identities=15% Similarity=0.088 Sum_probs=62.6
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHH-----HHHHhhccccEE-EcCCCCC-CchHHHHHHhcC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKE-----EHVRRGQLADVC-LDTPLCN-GHTTSMDVLWTG 82 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~-----~~~~~~~~~Dv~-l~~~~~~-~g~~~lEAla~G 82 (130)
++-.+.++|.+|.++..|-+.+.-+ ..+..+|.+-|..-.. .... .+ ..+. +...+.- ...++.|-+..|
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~-~~-~~i~~v~q~~~l~~~~tv~enl~~~ 100 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPP-EK-RRIGYVFQDARLFPHYKVRGNLRYG 100 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccch-hh-CCEEEEcCCcccCCCCcHHHHHHhh
Confidence 5668889998888998888877633 2222467776632100 0111 11 1222 2222211 245777877776
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCceec-------CHHHHHHHHHHhccCCC
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIAR-------THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~-------~~~~y~~~a~~l~~d~e 130 (130)
.+- ........++..+|+.++... ....-+.+|..|+.+|+
T Consensus 101 ~~~-------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 101 MAK-------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred hhh-------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 431 111234567888898765543 34566888888888874
No 488
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=32.72 E-value=83 Score=23.03 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=36.4
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC--HHHHHHhhccccEEE
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--KEEHVRRGQLADVCL 64 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~--~~~~~~~~~~~Dv~l 64 (130)
.+|.++.|+++.+++-. |..+.|+++++..|-+ +.-..-.++. ..|+ +.+...|.++
T Consensus 106 ~qvk~~~p~~v~IFi~p--Ps~eeL~~RL~~Rgtd-s~e~I~~Rl~~a~~Ei-~~~~~fdyvi 164 (191)
T COG0194 106 LQVKKKMPNAVSIFILP--PSLEELERRLKGRGTD-SEEVIARRLENAKKEI-SHADEFDYVI 164 (191)
T ss_pred HHHHHhCCCeEEEEEcC--CCHHHHHHHHHccCCC-CHHHHHHHHHHHHHHH-HHHHhCCEEE
Confidence 35778899999999983 6678888888877765 3322233332 2333 3445566665
No 489
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=32.56 E-value=2.7e+02 Score=22.64 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=49.9
Q ss_pred HHHhhCCC-cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC------------------CHHHHHHhhc--cccEE
Q psy15363 5 FVLKAVPN-SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA------------------AKEEHVRRGQ--LADVC 63 (130)
Q Consensus 5 ~il~~~P~-a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~------------------~~~~~~~~~~--~~Dv~ 63 (130)
.|.+++|+ .+++-+.. +...+.|.++++++.- +.|.+...- ..+.+..+.. .+|+.
T Consensus 14 dVi~~~~d~f~v~~Laa-~~n~~~L~~q~~~f~p--~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~~l~~~~~~D~v 90 (383)
T PRK12464 14 DVVSAHPEHFKVVGLTA-NYNIELLEQQIKRFQP--RIVSVADKELADTLRTRLSANTSKITYGTDGLIAVATHPGSDLV 90 (383)
T ss_pred HHHHhCccccEEEEEEC-CCCHHHHHHHHHHhCC--CEEEEcCHHHHHHHHHhccCCCcEEEECHHHHHHHHcCCCCCEE
Confidence 35566775 55544443 3455677777777652 444443321 1223333333 36888
Q ss_pred EcCCC-CCCchHHHHHHhcCCcEEecCCCch
Q psy15363 64 LDTPL-CNGHTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 64 l~~~~-~~~g~~~lEAla~G~PvV~~~g~~~ 93 (130)
+.... ..|=..+++|+-.|+.+-.-..+.+
T Consensus 91 v~AivG~aGL~pt~~Ai~~gk~iaLANKESL 121 (383)
T PRK12464 91 LSSVVGAAGLLPTIEALKAKKDIALANKETL 121 (383)
T ss_pred EEhhhcHhhHHHHHHHHHCCCcEEEechhhH
Confidence 87653 4555679999999998765555543
No 490
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=32.47 E-value=1.5e+02 Score=19.50 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=42.5
Q ss_pred EEEEeecCccc----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC--CCCchHHHHHHhcCCcEEe
Q psy15363 14 ILWLLKFPAVG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--CNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 14 ~l~i~g~~~~~----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--~~~g~~~lEAla~G~PvV~ 87 (130)
++++++..|-. -..+++.+++.|.+ .+.-..+..++...+..+|++|--.. |-.+..-=.+--.|+||..
T Consensus 3 ~IlLvC~aGmSTSlLV~Km~~aA~~kg~~----~~I~A~s~~e~~~~~~~~DvvLlGPQv~y~~~~~~~~~~~~giPV~v 78 (102)
T COG1440 3 KILLVCAAGMSTSLLVTKMKKAAESKGKD----VTIEAYSETELSEYIDNADVVLLGPQVRYMLKQLKEAAEEKGIPVEV 78 (102)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHhCCCc----eEEEEechhHHHHhhhcCCEEEEChHHHHHHHHHHHHhcccCCCeEE
Confidence 34555543432 35677888888875 22333455667777789999974332 3323322333345679988
Q ss_pred cCC
Q psy15363 88 LPG 90 (130)
Q Consensus 88 ~~g 90 (130)
.+.
T Consensus 79 I~~ 81 (102)
T COG1440 79 IDM 81 (102)
T ss_pred eCH
Confidence 753
No 491
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=32.40 E-value=1.5e+02 Score=22.81 Aligned_cols=66 Identities=6% Similarity=0.008 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchH--HHHHHhc-CCcEEecCCCc
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTT--SMDVLWT-GTPVVTLPGET 92 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~--~lEAla~-G~PvV~~~g~~ 92 (130)
...+++.+.++|+.++..++..-..-......|-.+.-+..+ .+.+.. +-=.++. +.|||+..|+.
T Consensus 20 ~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~~~~~~~~--mG~alp~AiGaklA~pd~~VVai~GDG 88 (280)
T PRK11869 20 RNALMKALSELNLKPRQVVIVSGIGQAAKMPHYINVNGFHTL--HGRAIPAATAVKATNPELTVIAEGGDG 88 (280)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHccCCCCCcc--cccHHHHHHHHHHHCCCCcEEEEECch
Confidence 456777788999988777777665432222222112211111 222222 2223333 57899987764
No 492
>CHL00067 rps2 ribosomal protein S2
Probab=32.32 E-value=59 Score=24.27 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=22.6
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
.=|+.+-.-|......+.||.-+|+|||+.-
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaiv 191 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISIL 191 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEE
Confidence 3455543444445689999999999999873
No 493
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=32.27 E-value=85 Score=27.18 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=34.1
Q ss_pred CCCCCCchH-----HHHHHhcCCcEEecCCCc--hhhhhHHHHHHhcCCCC
Q psy15363 66 TPLCNGHTT-----SMDVLWTGTPVVTLPGET--LASRVAASQLATLGCPE 109 (130)
Q Consensus 66 ~~~~~~g~~-----~lEAla~G~PvV~~~g~~--~~~r~~~~~l~~~g~~~ 109 (130)
-+||+++.. +.-|+++|-||++.+.+. +..-.+-.+|++.|+|.
T Consensus 243 ISPWNFPLAIFtGqiaAAL~aGN~VlAKPAEqTpLIAa~aV~ll~eAGvP~ 293 (769)
T COG4230 243 ISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQAVRLLHEAGVPP 293 (769)
T ss_pred ECCCCchHHHHHhHHHHHHHcCCccccCccccccHHHHHHHHHHHHcCCCh
Confidence 367777665 578999999999998753 45566778899999984
No 494
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=32.17 E-value=2.9e+02 Score=22.70 Aligned_cols=108 Identities=17% Similarity=0.060 Sum_probs=62.3
Q ss_pred HHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCC-CEEEecCCC--------HHHHHHhhccccEEEcCC-CCCCchHH
Q psy15363 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQH-RILFSNVAA--------KEEHVRRGQLADVCLDTP-LCNGHTTS 75 (130)
Q Consensus 6 il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~-rv~f~g~~~--------~~~~~~~~~~~Dv~l~~~-~~~~g~~~ 75 (130)
+.++.|++.+-.+|+. .. -.+.-.+++.|+... .|.++|.-+ ++-....++...+-+.+. ...-.-..
T Consensus 66 i~~E~~Dailp~~ggq-t~-Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P~~~~~~~~e~~ 143 (400)
T COG0458 66 IEKERPDAILPTLGGQ-TA-LNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVPSRIAHSVEEAD 143 (400)
T ss_pred HHhcCcceeecccCCc-ch-hhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCCccccccHHHHh
Confidence 5578899998888853 22 233444566666522 567776643 333445555555433211 01112223
Q ss_pred HHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 76 MDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 76 lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
-.+-..|-|||..+...+ -|....++.+.+++.+++....
T Consensus 144 ~~~~~ig~PvIVrP~~~l-----------GG~G~~i~~n~eel~~~~~~~l 183 (400)
T COG0458 144 EIADEIGYPVIVKPSFGL-----------GGSGGGIAYNEEELEEIIEEGL 183 (400)
T ss_pred hhHhhcCCCEEEecCcCC-----------CCCceeEEeCHHHHHHHHHhcc
Confidence 344567899999875421 2556788999998888776543
No 495
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=32.12 E-value=1.5e+02 Score=19.44 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCch
Q psy15363 28 IQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 28 l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~ 93 (130)
.++++++ |+ .|.+....+.+++...+..+|+++-.+.....-..++++ -++..|...|...
T Consensus 11 ~~~~l~~-~~---~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~ 71 (133)
T PF00389_consen 11 EIERLEE-GF---EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGV 71 (133)
T ss_dssp HHHHHHH-TS---EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSC
T ss_pred HHHHHHC-Cc---eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEccccc
Confidence 3444555 43 688888888889999999999998543322456677777 7888887766433
No 496
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=32.12 E-value=65 Score=24.95 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=44.6
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHH-HHHHhhccccEEEcCC----CCCCchHHHHHH-hcCCcE
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKE-EHVRRGQLADVCLDTP----LCNGHTTSMDVL-WTGTPV 85 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~-~~~~~~~~~Dv~l~~~----~~~~g~~~lEAl-a~G~Pv 85 (130)
+..+++.| +.+..+.+++.++++|++++||++-.+.+.. +.. -....+-+... ....+.++|||+ ..|+++
T Consensus 203 ~~~vyiCG-P~~m~~~v~~~l~~~Gv~~~~i~~E~F~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~lL~~~~~~gi~~ 279 (332)
T PRK10684 203 SRTVMTCG-PAPYMDWVEQEVKALGVTADRFFKEKFFTPVAEAA--TSGLTFTKLQPAREFYAPVGTTLLEALESNKVPV 279 (332)
T ss_pred CCEEEEEC-CHHHHHHHHHHHHHcCCCHHHeEeeccCCCCCCcC--CCceEEEEecCCEEEEeCCCChHHHHHHHcCCCc
Confidence 35555555 4566778888999999998899987765421 000 01122333222 123466777775 567666
Q ss_pred E--ecCCC
Q psy15363 86 V--TLPGE 91 (130)
Q Consensus 86 V--~~~g~ 91 (130)
- |..|.
T Consensus 280 ~~~C~~G~ 287 (332)
T PRK10684 280 VAACRAGV 287 (332)
T ss_pred cCCCCCcC
Confidence 3 44443
No 497
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=31.81 E-value=71 Score=26.27 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=31.2
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLD 38 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~ 38 (130)
+..++.++.|+.++++-|+++-+.+.+-+++++.|+.
T Consensus 207 ~l~~lr~~~~~~~ILvR~DSgF~~~el~~~ce~~g~~ 243 (448)
T PF13701_consen 207 VLRRLRQRWPDTRILVRGDSGFASPELMDWCEAEGVD 243 (448)
T ss_pred HHHHHhhhCccceEEEEecCccCcHHHHHHHHhCCCe
Confidence 3456777789999999998888889999999999984
No 498
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=31.78 E-value=2.2e+02 Score=21.17 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
.=|+.+-.-|......+.||.-.|+|+|+.-
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~iv 185 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIV 185 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEe
Confidence 4566654445556688999999999999883
No 499
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=31.70 E-value=2.1e+02 Score=21.48 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=50.1
Q ss_pred cEEEEeecCcc----cHHHHHHHHHHcCCCCCCEEE---ecCCCHHHHH---HhhccccEEEcCCCCCCchHHHHHHhcC
Q psy15363 13 SILWLLKFPAV----GEANIQATAQALGLDQHRILF---SNVAAKEEHV---RRGQLADVCLDTPLCNGHTTSMDVLWTG 82 (130)
Q Consensus 13 a~l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f---~g~~~~~~~~---~~~~~~Dv~l~~~~~~~g~~~lEAla~G 82 (130)
..|++-|+++. +-..+++-+.+.|++ ...+| .|+.+.+... ..+..-+..+=|-.+..--+++=|..+|
T Consensus 95 ~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp-~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIItQ~FHceRAlfiA~~~g 173 (235)
T COG2949 95 NYLLLSGDNATVSYNEPRTMRKDLIAAGVP-AKNIFLDYAGFRTLDSVVRARKVFGTNDFTIITQRFHCERALFIARQMG 173 (235)
T ss_pred eEEEEecCCCcccccchHHHHHHHHHcCCC-HHHeeecccCccHHHHHHHHHHHcCcCcEEEEecccccHHHHHHHHHhC
Confidence 46666776532 234677778889998 44444 4555444332 2233344444444666778899999999
Q ss_pred CcEEecCCCch
Q psy15363 83 TPVVTLPGETL 93 (130)
Q Consensus 83 ~PvV~~~g~~~ 93 (130)
+-.++......
T Consensus 174 IdAic~~ap~p 184 (235)
T COG2949 174 IDAICFAAPDP 184 (235)
T ss_pred CceEEecCCCc
Confidence 99999865443
No 500
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=31.65 E-value=2.1e+02 Score=21.01 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=34.5
Q ss_pred CCEEEecCCCH--HHHHHhhcc----ccEEEc-CCCCCCch-HHHHHHhcCCcEEecCCCchhhhhHHHHHHh
Q psy15363 40 HRILFSNVAAK--EEHVRRGQL----ADVCLD-TPLCNGHT-TSMDVLWTGTPVVTLPGETLASRVAASQLAT 104 (130)
Q Consensus 40 ~rv~f~g~~~~--~~~~~~~~~----~Dv~l~-~~~~~~g~-~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~ 104 (130)
..|...|..|- -++..++.. -.+.+- |-.|.+.. +--+-+.+|+|-|+..|+.=.+-+.++++++
T Consensus 120 ~~I~vIGNAPTAL~~ll~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~~~vP~I~~~G~kGGS~vAaAivNA 192 (198)
T PF02570_consen 120 GAIVVIGNAPTALFELLELIEEGGVRPALVIGVPVGFVGAAESKEALMQSGVPYITVRGRKGGSPVAAAIVNA 192 (198)
T ss_dssp TCEEEESS-HHHHHHHHHHHHTTT-TTSEEEE---SSSSHHHHHHHHHHSTS-EEEESSS---HHHHHHHHHH
T ss_pred CcEEEEeCcHHHHHHHHHHHHhcCCCCcEEEECCCcccCcHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHH
Confidence 67788888873 334444433 233332 23343322 2334456799999999887777777777765
Done!