Query psy15363
Match_columns 130
No_of_seqs 134 out of 1023
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:59:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 100.0 2.4E-35 8.3E-40 247.4 14.3 130 1-130 541-670 (723)
2 3q3e_A HMW1C-like glycosyltran 100.0 9.5E-32 3.2E-36 221.6 11.8 128 1-130 459-590 (631)
3 2vsy_A XCC0866; transferase, g 99.9 2.5E-25 8.6E-30 179.5 13.3 129 2-130 396-524 (568)
4 2f9f_A First mannosyl transfer 99.7 6E-18 2E-22 118.6 9.8 119 4-130 42-164 (177)
5 3oy2_A Glycosyltransferase B73 99.7 8.3E-18 2.8E-22 130.3 9.5 120 2-129 205-356 (413)
6 2bfw_A GLGA glycogen synthase; 99.7 1.2E-17 4.3E-22 117.9 9.5 116 2-129 58-182 (200)
7 3c48_A Predicted glycosyltrans 99.7 1.6E-17 5.3E-22 129.5 10.8 121 2-129 264-392 (438)
8 3okp_A GDP-mannose-dependent a 99.7 1.3E-17 4.5E-22 127.5 10.1 117 2-129 219-345 (394)
9 2x6q_A Trehalose-synthase TRET 99.7 1.6E-17 5.5E-22 128.9 10.0 120 2-129 252-380 (416)
10 3qhp_A Type 1 capsular polysac 99.7 2.7E-17 9.3E-22 113.2 7.2 111 8-129 28-141 (166)
11 2gek_A Phosphatidylinositol ma 99.7 8.1E-17 2.8E-21 123.8 8.5 117 2-129 230-350 (406)
12 3fro_A GLGA glycogen synthase; 99.7 3.5E-16 1.2E-20 120.9 12.1 118 2-130 273-398 (439)
13 2r60_A Glycosyl transferase, g 99.7 9.7E-17 3.3E-21 127.6 8.3 121 2-129 283-425 (499)
14 2x0d_A WSAF; GT4 family, trans 99.7 2E-16 6.8E-21 124.9 8.6 113 2-130 263-381 (413)
15 2jjm_A Glycosyl transferase, g 99.7 1.2E-16 4E-21 123.3 6.3 117 2-129 232-351 (394)
16 2iw1_A Lipopolysaccharide core 99.6 1.9E-16 6.3E-21 120.5 5.5 116 3-129 218-338 (374)
17 2iuy_A Avigt4, glycosyltransfe 99.6 3.1E-15 1.1E-19 113.3 11.8 106 12-126 188-306 (342)
18 2hy7_A Glucuronosyltransferase 99.6 1.9E-15 6.4E-20 118.6 9.6 106 3-130 238-354 (406)
19 3s28_A Sucrose synthase 1; gly 99.6 1.9E-15 6.4E-20 128.4 6.8 120 2-129 593-735 (816)
20 2xci_A KDO-transferase, 3-deox 99.6 2.7E-14 9.1E-19 111.1 11.7 121 2-128 215-346 (374)
21 1rzu_A Glycogen synthase 1; gl 99.6 4E-14 1.4E-18 111.9 11.9 115 2-129 312-444 (485)
22 2qzs_A Glycogen synthase; glyc 99.5 3.8E-14 1.3E-18 112.0 11.2 115 2-129 313-445 (485)
23 3beo_A UDP-N-acetylglucosamine 99.5 2.1E-13 7E-18 104.0 11.5 113 2-129 228-343 (375)
24 1vgv_A UDP-N-acetylglucosamine 99.5 6.5E-14 2.2E-18 107.2 8.3 113 2-129 228-343 (384)
25 1v4v_A UDP-N-acetylglucosamine 99.4 4.8E-13 1.7E-17 102.4 9.7 112 2-129 220-335 (376)
26 3vue_A GBSS-I, granule-bound s 99.4 4.6E-13 1.6E-17 109.0 5.2 84 2-91 348-434 (536)
27 1f0k_A MURG, UDP-N-acetylgluco 99.4 3.8E-12 1.3E-16 96.7 9.7 104 12-125 212-322 (364)
28 1uqt_A Alpha, alpha-trehalose- 99.3 5.3E-12 1.8E-16 101.7 10.5 119 2-129 276-420 (482)
29 3t5t_A Putative glycosyltransf 99.2 2.4E-11 8.3E-16 98.3 9.2 117 2-129 302-439 (496)
30 3dzc_A UDP-N-acetylglucosamine 99.2 6.7E-11 2.3E-15 92.6 10.0 115 2-129 253-368 (396)
31 3ot5_A UDP-N-acetylglucosamine 99.2 7.1E-11 2.4E-15 92.8 9.8 114 2-129 247-362 (403)
32 3tsa_A SPNG, NDP-rhamnosyltran 99.0 9.2E-10 3.2E-14 84.6 8.1 111 4-130 243-358 (391)
33 2o6l_A UDP-glucuronosyltransfe 99.0 5.3E-09 1.8E-13 72.1 10.3 85 40-129 68-155 (170)
34 3otg_A CALG1; calicheamicin, T 99.0 1.8E-09 6.3E-14 83.2 8.1 83 40-129 292-377 (412)
35 3rhz_A GTF3, nucleotide sugar 99.0 2.6E-09 8.9E-14 82.5 8.6 98 10-126 197-302 (339)
36 4fzr_A SSFS6; structural genom 98.9 1.1E-08 3.9E-13 78.8 9.8 103 12-129 264-369 (398)
37 2iyf_A OLED, oleandomycin glyc 98.9 9.4E-09 3.2E-13 79.9 8.9 108 7-129 257-368 (430)
38 4hwg_A UDP-N-acetylglucosamine 98.8 3.8E-08 1.3E-12 77.0 10.9 112 3-130 229-344 (385)
39 3ia7_A CALG4; glycosysltransfe 98.8 1.7E-08 5.8E-13 77.3 7.8 84 40-129 281-367 (402)
40 3s2u_A UDP-N-acetylglucosamine 98.7 1.6E-07 5.5E-12 72.5 10.8 117 5-130 201-326 (365)
41 3rsc_A CALG2; TDP, enediyne, s 98.7 8.5E-08 2.9E-12 74.1 9.1 83 40-129 297-382 (415)
42 2p6p_A Glycosyl transferase; X 98.7 8.8E-08 3E-12 73.4 8.5 102 12-129 244-348 (384)
43 3nb0_A Glycogen [starch] synth 98.6 4.4E-08 1.5E-12 82.0 5.5 67 25-92 472-552 (725)
44 2yjn_A ERYCIII, glycosyltransf 98.5 2.4E-07 8.3E-12 72.6 7.9 83 40-129 319-404 (441)
45 2iya_A OLEI, oleandomycin glyc 98.5 7.1E-07 2.4E-11 69.3 8.7 83 40-129 305-390 (424)
46 3oti_A CALG3; calicheamicin, T 98.4 1.1E-07 3.8E-12 73.3 3.8 65 12-90 263-327 (398)
47 1iir_A Glycosyltransferase GTF 98.3 2.1E-06 7.3E-11 66.7 8.5 82 40-129 285-369 (415)
48 1rrv_A Glycosyltransferase GTF 98.2 4.2E-06 1.4E-10 64.9 7.8 82 40-129 286-370 (416)
49 3hbm_A UDP-sugar hydrolase; PS 97.9 0.00011 3.8E-09 55.2 10.4 85 14-109 186-270 (282)
50 4amg_A Snogd; transferase, pol 97.9 1.2E-05 3.9E-10 61.5 5.0 63 39-108 287-349 (400)
51 3h4t_A Glycosyltransferase GTF 97.8 5.4E-05 1.8E-09 58.7 7.4 81 40-127 268-351 (404)
52 1psw_A ADP-heptose LPS heptosy 97.4 0.00013 4.5E-09 55.0 3.9 86 3-93 202-291 (348)
53 2pq6_A UDP-glucuronosyl/UDP-gl 97.3 0.0009 3.1E-08 53.2 8.2 83 40-129 353-440 (482)
54 3tov_A Glycosyl transferase fa 97.3 0.00058 2E-08 52.3 6.7 79 12-97 217-295 (349)
55 2c1x_A UDP-glucose flavonoid 3 97.2 0.00087 3E-08 53.2 7.4 82 40-128 325-412 (456)
56 2acv_A Triterpene UDP-glucosyl 97.2 0.0023 7.9E-08 50.8 9.6 83 40-127 332-424 (463)
57 2gt1_A Lipopolysaccharide hept 97.1 0.0013 4.6E-08 49.2 7.1 115 2-129 198-323 (326)
58 3hbf_A Flavonoid 3-O-glucosylt 96.9 0.0049 1.7E-07 49.1 9.1 82 40-128 327-414 (454)
59 2jzc_A UDP-N-acetylglucosamine 96.4 0.0023 7.9E-08 46.6 3.2 77 41-124 115-195 (224)
60 2vch_A Hydroquinone glucosyltr 96.2 0.025 8.5E-07 45.0 8.8 78 43-127 342-428 (480)
61 2c4m_A Glycogen phosphorylase; 94.3 0.45 1.5E-05 40.6 10.6 79 12-91 555-650 (796)
62 1l5w_A Maltodextrin phosphoryl 94.2 0.49 1.7E-05 40.3 10.6 78 13-91 566-660 (796)
63 4had_A Probable oxidoreductase 94.0 0.25 8.5E-06 37.1 7.9 77 4-89 40-117 (350)
64 2gj4_A Glycogen phosphorylase, 93.1 0.78 2.7E-05 39.2 10.0 80 12-92 589-685 (824)
65 3uuw_A Putative oxidoreductase 92.9 0.86 2.9E-05 33.6 9.2 75 3-89 22-97 (308)
66 2l2q_A PTS system, cellobiose- 92.0 1.5 5E-05 27.7 8.9 75 12-90 4-84 (109)
67 3j20_B 30S ribosomal protein S 91.6 0.3 1E-05 34.9 5.0 77 11-88 63-140 (202)
68 3to5_A CHEY homolog; alpha(5)b 89.6 3 0.0001 27.2 11.6 111 11-127 11-132 (134)
69 3db2_A Putative NADPH-dependen 89.5 1 3.6E-05 33.9 6.8 77 3-89 20-97 (354)
70 3moi_A Probable dehydrogenase; 89.5 1.9 6.4E-05 33.0 8.2 77 3-89 18-95 (387)
71 2pln_A HP1043, response regula 89.3 2.7 9.3E-05 26.2 10.4 109 10-127 16-132 (137)
72 3kht_A Response regulator; PSI 89.2 2.8 9.7E-05 26.4 9.9 110 12-126 5-126 (144)
73 3h1g_A Chemotaxis protein CHEY 89.0 2.8 9.5E-05 26.0 10.8 111 12-128 5-127 (129)
74 1k68_A Phytochrome response re 88.7 2.9 9.8E-05 25.8 11.2 110 12-126 2-129 (140)
75 3e9m_A Oxidoreductase, GFO/IDH 88.6 1.1 3.8E-05 33.5 6.2 78 3-89 20-98 (330)
76 4fb5_A Probable oxidoreductase 88.5 1.2 4.2E-05 33.4 6.5 75 6-89 50-125 (393)
77 3mz0_A Inositol 2-dehydrogenas 88.3 1.4 4.8E-05 33.0 6.7 78 4-89 18-97 (344)
78 1ydw_A AX110P-like protein; st 88.2 1.9 6.4E-05 32.5 7.4 81 3-89 21-102 (362)
79 3heb_A Response regulator rece 88.2 3.5 0.00012 26.2 11.3 109 13-126 5-133 (152)
80 2iz6_A Molybdenum cofactor car 88.1 1.2 4E-05 31.0 5.7 68 56-128 104-174 (176)
81 4hkt_A Inositol 2-dehydrogenas 87.7 2.1 7.1E-05 31.8 7.2 76 3-89 18-94 (331)
82 1vi6_A 30S ribosomal protein S 87.6 0.49 1.7E-05 33.9 3.5 77 11-88 67-144 (208)
83 3mm4_A Histidine kinase homolo 87.3 5.4 0.00018 27.3 10.3 110 12-127 61-195 (206)
84 3ezy_A Dehydrogenase; structur 86.9 2 6.7E-05 32.2 6.7 78 3-89 17-95 (344)
85 2ixa_A Alpha-N-acetylgalactosa 86.4 3.8 0.00013 31.9 8.3 80 4-89 36-122 (444)
86 1zh8_A Oxidoreductase; TM0312, 86.2 3.7 0.00013 30.7 8.0 77 4-89 35-113 (340)
87 3v5n_A Oxidoreductase; structu 86.1 1.4 4.8E-05 34.1 5.7 79 5-89 57-141 (417)
88 3ohs_X Trans-1,2-dihydrobenzen 86.1 2 6.9E-05 32.0 6.4 78 3-89 17-97 (334)
89 3dty_A Oxidoreductase, GFO/IDH 85.7 1 3.5E-05 34.6 4.6 79 5-89 32-116 (398)
90 3rc1_A Sugar 3-ketoreductase; 85.4 2.2 7.7E-05 32.1 6.4 77 3-89 43-120 (350)
91 3u5c_A 40S ribosomal protein S 85.3 0.37 1.3E-05 35.6 1.9 75 13-88 71-146 (252)
92 3nbm_A PTS system, lactose-spe 85.1 1.7 5.7E-05 27.7 4.8 77 11-91 5-87 (108)
93 3iz6_A 40S ribosomal protein S 85.1 0.52 1.8E-05 35.7 2.6 75 13-88 76-151 (305)
94 1h6d_A Precursor form of gluco 84.6 2.5 8.7E-05 32.9 6.5 79 4-89 100-181 (433)
95 3q2i_A Dehydrogenase; rossmann 84.3 3.6 0.00012 30.8 7.2 76 4-89 29-106 (354)
96 1k66_A Phytochrome response re 83.8 5.9 0.0002 24.7 10.8 110 12-126 6-136 (149)
97 1i3c_A Response regulator RCP1 83.8 6.3 0.00022 25.0 10.6 109 12-125 8-134 (149)
98 1xea_A Oxidoreductase, GFO/IDH 83.6 3.4 0.00012 30.5 6.7 76 3-89 18-94 (323)
99 4h3v_A Oxidoreductase domain p 83.5 1.4 4.6E-05 33.1 4.5 69 13-90 38-107 (390)
100 3u80_A 3-dehydroquinate dehydr 83.5 4.8 0.00017 27.3 6.7 60 26-88 36-105 (151)
101 2czc_A Glyceraldehyde-3-phosph 83.4 0.97 3.3E-05 34.2 3.6 83 2-90 16-111 (334)
102 3euw_A MYO-inositol dehydrogen 83.0 3.5 0.00012 30.7 6.5 75 3-89 19-96 (344)
103 2hqs_H Peptidoglycan-associate 82.6 3.5 0.00012 26.3 5.6 65 3-67 28-113 (118)
104 2aiz_P Outer membrane protein 82.6 2.9 0.0001 27.4 5.3 47 2-48 51-110 (134)
105 2ho3_A Oxidoreductase, GFO/IDH 82.2 3.7 0.00013 30.3 6.4 77 3-89 16-93 (325)
106 3ec7_A Putative dehydrogenase; 81.8 2.6 9E-05 31.8 5.5 78 4-89 39-118 (357)
107 2kgw_A Outer membrane protein 81.7 3.3 0.00011 26.7 5.3 46 3-48 46-104 (129)
108 1ygp_A Yeast glycogen phosphor 81.6 14 0.00048 31.9 10.2 53 41-93 689-745 (879)
109 3cea_A MYO-inositol 2-dehydrog 81.6 5 0.00017 29.7 6.9 76 4-88 24-101 (346)
110 1tlt_A Putative oxidoreductase 81.2 5.6 0.00019 29.2 7.0 74 4-89 22-96 (319)
111 3td3_A Outer membrane protein 81.1 5.1 0.00017 25.5 6.0 46 3-48 36-95 (123)
112 2qvg_A Two component response 80.8 7.8 0.00027 24.0 10.0 107 12-123 7-130 (143)
113 1rcu_A Conserved hypothetical 80.7 5.5 0.00019 28.0 6.4 69 54-125 113-192 (195)
114 4fyk_A Deoxyribonucleoside 5'- 80.6 4.3 0.00015 27.5 5.7 37 54-90 63-102 (152)
115 1vs1_A 3-deoxy-7-phosphoheptul 80.1 12 0.00041 27.7 8.4 81 25-109 91-175 (276)
116 2glx_A 1,5-anhydro-D-fructose 80.1 5.4 0.00018 29.4 6.6 76 4-89 17-93 (332)
117 3p9z_A Uroporphyrinogen III co 79.9 3.7 0.00013 29.1 5.4 112 9-128 107-227 (229)
118 1p9l_A Dihydrodipicolinate red 79.3 6.6 0.00023 28.5 6.7 30 59-88 45-75 (245)
119 2f62_A Nucleoside 2-deoxyribos 79.1 6.8 0.00023 26.6 6.3 62 26-91 30-107 (161)
120 2xzm_B RPS0E; ribosome, transl 78.9 1.3 4.5E-05 32.4 2.7 75 13-88 67-143 (241)
121 3hdv_A Response regulator; PSI 78.8 9.1 0.00031 23.5 10.1 109 12-127 7-126 (136)
122 4gqa_A NAD binding oxidoreduct 78.3 5.5 0.00019 30.5 6.3 70 12-90 58-128 (412)
123 3kip_A 3-dehydroquinase, type 78.3 5.9 0.0002 27.3 5.7 59 27-88 47-115 (167)
124 3btv_A Galactose/lactose metab 77.9 7.5 0.00026 30.2 7.1 80 3-89 39-126 (438)
125 3ilh_A Two component response 77.9 9.9 0.00034 23.5 9.8 111 12-127 9-138 (146)
126 3ldt_A Outer membrane protein, 77.9 6.1 0.00021 26.8 5.9 65 3-67 76-161 (169)
127 2zay_A Response regulator rece 77.8 10 0.00035 23.6 10.1 109 11-126 7-126 (147)
128 3eul_A Possible nitrate/nitrit 76.8 12 0.00039 23.7 11.4 113 10-127 13-134 (152)
129 3m2t_A Probable dehydrogenase; 76.6 2.4 8.1E-05 32.1 3.8 78 3-89 21-99 (359)
130 3sz8_A 2-dehydro-3-deoxyphosph 76.4 21 0.00072 26.6 8.8 82 25-110 80-165 (285)
131 1tvm_A PTS system, galactitol- 76.1 7.3 0.00025 24.6 5.5 63 13-87 22-90 (113)
132 3u3x_A Oxidoreductase; structu 76.1 4.2 0.00014 30.7 5.1 72 10-90 48-120 (361)
133 1i1q_B Anthranilate synthase c 76.0 16 0.00054 24.8 8.4 72 14-88 2-82 (192)
134 2qsj_A DNA-binding response re 75.9 12 0.00042 23.5 10.5 110 12-127 3-123 (154)
135 1e2b_A Enzyme IIB-cellobiose; 75.7 6.8 0.00023 24.6 5.2 72 14-89 5-80 (106)
136 3bbn_B Ribosomal protein S2; s 75.5 16 0.00054 26.4 7.7 31 59-89 157-187 (231)
137 2k1s_A Inner membrane lipoprot 75.1 7.1 0.00024 25.8 5.4 64 3-66 56-140 (149)
138 2nvw_A Galactose/lactose metab 75.0 11 0.00036 29.9 7.3 80 3-89 58-145 (479)
139 3lua_A Response regulator rece 74.9 12 0.00042 23.1 8.7 109 12-127 4-126 (140)
140 3e18_A Oxidoreductase; dehydro 74.9 15 0.00053 27.5 8.0 76 3-89 20-96 (359)
141 3evn_A Oxidoreductase, GFO/IDH 74.8 0.77 2.6E-05 34.3 0.5 31 59-89 67-98 (329)
142 3oon_A Outer membrane protein 74.5 7.9 0.00027 24.5 5.4 46 3-48 39-98 (123)
143 1g60_A Adenine-specific methyl 74.5 4.2 0.00014 29.3 4.5 32 59-91 212-243 (260)
144 3upl_A Oxidoreductase; rossman 74.1 5.6 0.00019 31.6 5.4 83 3-89 38-139 (446)
145 3bch_A 40S ribosomal protein S 74.0 1.6 5.4E-05 32.2 2.0 75 13-88 105-180 (253)
146 3fs2_A 2-dehydro-3-deoxyphosph 73.7 26 0.00089 26.3 9.3 82 25-110 101-186 (298)
147 4dad_A Putative pilus assembly 73.0 14 0.00049 22.9 8.8 111 11-127 19-140 (146)
148 3ehd_A Uncharacterized conserv 72.8 14 0.00047 25.2 6.5 73 54-126 64-161 (162)
149 2fp4_B Succinyl-COA ligase [GD 72.6 31 0.0011 26.7 10.0 98 29-128 280-394 (395)
150 1r0k_A 1-deoxy-D-xylulose 5-ph 72.3 19 0.00066 28.0 8.0 84 4-91 21-126 (388)
151 3ijp_A DHPR, dihydrodipicolina 72.2 3.6 0.00012 30.8 3.7 38 52-89 81-119 (288)
152 2hqr_A Putative transcriptiona 71.8 20 0.00069 24.2 9.2 105 14-127 2-114 (223)
153 3kto_A Response regulator rece 71.1 16 0.00053 22.6 7.7 109 12-127 6-125 (136)
154 3n8k_A 3-dehydroquinate dehydr 70.6 10 0.00036 26.2 5.4 60 26-88 60-126 (172)
155 3gl9_A Response regulator; bet 70.5 15 0.00052 22.2 11.2 107 14-127 4-121 (122)
156 2j48_A Two-component sensor ki 70.5 13 0.00046 21.6 8.2 104 13-126 2-116 (119)
157 4e7p_A Response regulator; DNA 69.9 18 0.0006 22.7 11.7 111 13-128 21-140 (150)
158 2zkq_b 40S ribosomal protein S 69.7 1.4 4.8E-05 33.2 1.0 75 13-88 72-147 (295)
159 3czc_A RMPB; alpha/beta sandwi 69.5 17 0.00057 22.7 6.0 57 10-69 16-77 (110)
160 4f3y_A DHPR, dihydrodipicolina 69.5 3.5 0.00012 30.4 3.1 37 53-89 67-104 (272)
161 2khz_A C-MYC-responsive protei 69.3 5 0.00017 27.2 3.7 71 54-127 72-150 (165)
162 2gkg_A Response regulator homo 69.1 16 0.00053 21.8 9.2 110 13-130 6-127 (127)
163 1zco_A 2-dehydro-3-deoxyphosph 68.9 23 0.0008 25.8 7.5 79 26-109 77-160 (262)
164 3grc_A Sensor protein, kinase; 68.9 17 0.0006 22.3 10.2 111 11-127 5-126 (140)
165 1jbe_A Chemotaxis protein CHEY 68.8 16 0.00056 21.9 11.2 108 12-125 4-122 (128)
166 4es6_A Uroporphyrinogen-III sy 68.5 15 0.00051 26.0 6.3 108 9-124 130-252 (254)
167 1vr6_A Phospho-2-dehydro-3-deo 68.2 26 0.0009 26.8 7.8 81 25-109 159-243 (350)
168 3lwz_A 3-dehydroquinate dehydr 67.8 11 0.00039 25.5 5.1 60 26-88 39-105 (153)
169 2qkf_A 3-deoxy-D-manno-octulos 67.6 34 0.0012 25.2 8.5 79 26-109 76-159 (280)
170 1o60_A 2-dehydro-3-deoxyphosph 67.6 34 0.0012 25.4 8.2 79 26-109 79-162 (292)
171 3cnb_A DNA-binding response re 66.9 19 0.00066 22.0 11.2 111 11-127 7-129 (143)
172 3geb_A EYES absent homolog 2; 66.8 6.1 0.00021 29.3 3.8 52 1-61 218-270 (274)
173 3re1_A Uroporphyrinogen-III sy 66.6 3.1 0.00011 30.2 2.3 112 9-127 138-263 (269)
174 3oqb_A Oxidoreductase; structu 64.9 22 0.00075 26.7 6.9 58 25-89 56-114 (383)
175 1jr2_A Uroporphyrinogen-III sy 64.8 11 0.00036 27.5 4.9 110 11-127 156-281 (286)
176 3cyp_B Chemotaxis protein MOTB 64.7 11 0.00036 24.6 4.5 63 3-65 26-114 (138)
177 3i23_A Oxidoreductase, GFO/IDH 64.6 11 0.00039 28.0 5.2 77 4-89 19-96 (349)
178 3gt7_A Sensor protein; structu 64.5 24 0.00082 22.3 11.4 109 12-127 7-126 (154)
179 4gmf_A Yersiniabactin biosynth 64.5 17 0.00057 27.8 6.2 75 4-90 22-102 (372)
180 4eh1_A Flavohemoprotein; struc 64.2 7.9 0.00027 27.0 4.0 42 11-53 200-241 (243)
181 1r1m_A Outer membrane protein 63.6 14 0.00047 25.0 5.0 46 3-48 37-95 (164)
182 1boo_A Protein (N-4 cytosine-s 63.1 16 0.00054 27.2 5.7 34 59-93 252-285 (323)
183 4erh_A Outer membrane protein 63.1 14 0.00047 24.2 4.8 45 3-47 44-103 (148)
184 3hzh_A Chemotaxis response reg 62.8 26 0.0009 22.2 11.1 109 13-127 37-156 (157)
185 1vli_A Spore coat polysacchari 62.8 52 0.0018 25.5 9.3 82 24-110 102-188 (385)
186 2z2v_A Hypothetical protein PH 61.8 22 0.00076 27.0 6.4 42 49-90 67-109 (365)
187 2r25_B Osmosensing histidine p 61.5 25 0.00086 21.5 11.7 109 13-127 3-126 (133)
188 3t6k_A Response regulator rece 61.2 26 0.00089 21.6 11.5 108 13-127 5-123 (136)
189 2qxy_A Response regulator; reg 61.0 26 0.00089 21.5 9.5 109 12-127 4-120 (142)
190 1vkn_A N-acetyl-gamma-glutamyl 61.0 9.2 0.00031 29.3 4.1 81 4-92 30-110 (351)
191 1nvm_B Acetaldehyde dehydrogen 60.8 15 0.00052 27.4 5.2 81 3-90 19-105 (312)
192 3r0j_A Possible two component 60.5 39 0.0013 23.4 10.7 109 11-126 22-139 (250)
193 3lzd_A DPH2; diphthamide biosy 60.4 18 0.0006 28.1 5.6 79 4-88 256-341 (378)
194 3m6m_D Sensory/regulatory prot 60.1 28 0.00097 21.6 10.6 111 10-127 12-135 (143)
195 2vxb_A DNA repair protein RHP9 60.0 15 0.00053 26.3 5.0 20 69-88 77-96 (241)
196 2yv2_A Succinyl-COA synthetase 59.6 50 0.0017 24.3 8.3 109 15-126 154-295 (297)
197 3dmy_A Protein FDRA; predicted 59.0 34 0.0012 27.3 7.2 106 14-127 114-236 (480)
198 3qy9_A DHPR, dihydrodipicolina 58.9 20 0.00069 25.8 5.4 72 13-90 4-84 (243)
199 3eag_A UDP-N-acetylmuramate:L- 58.6 51 0.0017 24.3 7.8 71 14-87 6-95 (326)
200 3l4e_A Uncharacterized peptida 58.4 31 0.0011 24.0 6.3 77 9-88 24-119 (206)
201 1uqr_A 3-dehydroquinate dehydr 58.1 25 0.00085 23.9 5.4 61 25-88 32-99 (154)
202 3nvt_A 3-deoxy-D-arabino-heptu 57.7 53 0.0018 25.4 7.9 37 73-109 239-279 (385)
203 3gdo_A Uncharacterized oxidore 57.3 15 0.00051 27.5 4.7 74 4-89 22-96 (358)
204 1t35_A Hypothetical protein YV 57.2 45 0.0015 23.0 7.1 70 54-125 92-179 (191)
205 3tml_A 2-dehydro-3-deoxyphosph 57.0 36 0.0012 25.4 6.6 79 25-107 77-159 (288)
206 3ip3_A Oxidoreductase, putativ 57.0 20 0.00068 26.5 5.3 74 10-89 22-98 (337)
207 1vm6_A DHPR, dihydrodipicolina 56.3 34 0.0012 24.6 6.2 79 5-89 5-84 (228)
208 3f6p_A Transcriptional regulat 56.0 30 0.001 20.7 10.9 108 13-127 3-118 (120)
209 3g8r_A Probable spore coat pol 55.9 50 0.0017 25.3 7.4 78 26-107 81-162 (350)
210 3kux_A Putative oxidoreductase 55.6 22 0.00075 26.4 5.3 74 4-89 24-98 (352)
211 3aek_B Light-independent proto 55.1 25 0.00085 28.2 5.8 73 13-88 154-234 (525)
212 2ph5_A Homospermidine synthase 55.0 41 0.0014 26.9 7.0 81 10-90 11-115 (480)
213 2fvt_A Conserved hypothetical 55.0 12 0.0004 24.7 3.3 45 2-49 57-104 (135)
214 1tvc_A Methane monooxygenase c 54.8 23 0.00077 24.8 5.1 35 12-47 210-244 (250)
215 1p6q_A CHEY2; chemotaxis, sign 54.8 32 0.0011 20.6 10.5 109 13-127 7-126 (129)
216 1dbw_A Transcriptional regulat 54.7 32 0.0011 20.6 12.6 109 12-127 3-120 (126)
217 3c3m_A Response regulator rece 54.6 34 0.0012 20.9 10.0 107 13-126 4-121 (138)
218 2l26_A Uncharacterized protein 54.5 14 0.00047 27.4 4.0 64 3-66 193-277 (284)
219 3jte_A Response regulator rece 54.5 35 0.0012 20.9 11.1 107 13-126 4-121 (143)
220 2lpm_A Two-component response 53.8 40 0.0014 21.4 6.2 104 13-126 9-120 (123)
221 2p2s_A Putative oxidoreductase 52.5 9.9 0.00034 28.1 3.0 71 10-89 26-97 (336)
222 2jba_A Phosphate regulon trans 52.2 35 0.0012 20.3 7.5 108 13-127 3-121 (127)
223 1mio_A Nitrogenase molybdenum 52.2 33 0.0011 27.7 6.1 74 13-89 207-284 (533)
224 2x0j_A Malate dehydrogenase; o 52.1 26 0.00088 26.0 5.2 52 4-57 103-155 (294)
225 1p2f_A Response regulator; DRR 52.0 50 0.0017 22.1 9.6 105 14-126 4-115 (220)
226 3snk_A Response regulator CHEY 52.0 38 0.0013 20.6 7.3 110 12-128 14-133 (135)
227 3e82_A Putative oxidoreductase 51.8 23 0.00077 26.6 4.9 74 4-89 24-98 (364)
228 1eg2_A Modification methylase 51.7 17 0.00058 27.2 4.2 33 59-92 242-274 (319)
229 3en0_A Cyanophycinase; serine 51.6 70 0.0024 23.6 8.2 14 75-88 137-151 (291)
230 4e4t_A Phosphoribosylaminoimid 51.4 80 0.0027 24.2 9.9 105 10-121 33-163 (419)
231 2fi9_A Outer membrane protein; 50.9 12 0.0004 24.4 2.8 43 2-47 58-103 (128)
232 3k5i_A Phosphoribosyl-aminoimi 50.9 79 0.0027 24.0 11.5 112 11-125 23-159 (403)
233 2nwr_A 2-dehydro-3-deoxyphosph 50.5 71 0.0024 23.3 7.9 79 26-109 65-148 (267)
234 3k9d_A LMO1179 protein, aldehy 50.3 87 0.003 24.4 8.2 58 28-89 158-218 (464)
235 3u7q_A Nitrogenase molybdenum- 49.8 58 0.002 25.8 7.2 87 13-104 221-311 (492)
236 3c3w_A Two component transcrip 49.8 57 0.002 22.1 7.7 105 14-124 3-117 (225)
237 1qkk_A DCTD, C4-dicarboxylate 49.4 45 0.0015 20.8 10.8 107 12-125 3-118 (155)
238 2qr3_A Two-component system re 49.2 42 0.0014 20.3 10.6 109 12-127 3-125 (140)
239 1b7g_O Protein (glyceraldehyde 49.2 80 0.0027 23.7 7.6 83 3-91 16-110 (340)
240 2b4a_A BH3024; flavodoxin-like 49.1 43 0.0015 20.4 8.7 106 11-127 14-130 (138)
241 2d8m_A DNA-repair protein XRCC 48.8 49 0.0017 21.0 6.3 63 11-88 24-86 (129)
242 3i42_A Response regulator rece 48.7 41 0.0014 20.1 9.2 107 13-127 4-121 (127)
243 2xdq_B Light-independent proto 48.6 63 0.0022 25.6 7.2 74 12-88 166-247 (511)
244 3sbx_A Putative uncharacterize 48.6 64 0.0022 22.3 7.5 67 53-121 102-186 (189)
245 3a06_A 1-deoxy-D-xylulose 5-ph 48.5 93 0.0032 24.1 8.7 83 5-91 21-118 (376)
246 1oi7_A Succinyl-COA synthetase 48.2 78 0.0027 23.1 10.1 108 15-126 147-287 (288)
247 3cg4_A Response regulator rece 48.2 44 0.0015 20.3 6.7 108 11-125 6-124 (142)
248 2a33_A Hypothetical protein; s 48.1 25 0.00087 24.9 4.4 68 55-124 105-190 (215)
249 3hdg_A Uncharacterized protein 48.0 44 0.0015 20.2 10.5 109 12-127 7-124 (137)
250 3s0y_A Motility protein B; pep 47.7 52 0.0018 22.5 5.9 66 3-68 81-172 (193)
251 3klo_A Transcriptional regulat 47.5 59 0.002 21.9 6.2 111 12-127 7-128 (225)
252 2gpj_A Siderophore-interacting 47.5 14 0.00049 26.2 3.1 36 12-48 191-227 (252)
253 3u26_A PF00702 domain protein; 47.2 59 0.002 21.5 6.3 102 13-127 116-231 (234)
254 1vk2_A Uracil-DNA glycosylase 47.1 22 0.00074 24.9 3.9 38 10-48 48-99 (204)
255 2csu_A 457AA long hypothetical 47.0 1E+02 0.0035 24.1 8.2 100 25-126 162-287 (457)
256 1tmy_A CHEY protein, TMY; chem 47.0 42 0.0014 19.7 10.1 107 13-125 3-118 (120)
257 2yv2_A Succinyl-COA synthetase 46.8 35 0.0012 25.1 5.2 78 10-88 11-102 (297)
258 3hn7_A UDP-N-acetylmuramate-L- 46.4 81 0.0028 25.0 7.6 73 12-88 19-110 (524)
259 3bq9_A Predicted rossmann fold 46.0 57 0.0019 26.0 6.4 70 53-124 239-328 (460)
260 2gwr_A DNA-binding response re 45.9 68 0.0023 21.8 10.6 108 13-127 6-121 (238)
261 2qzj_A Two-component response 45.7 50 0.0017 20.2 9.6 107 12-125 4-118 (136)
262 3cg0_A Response regulator rece 45.4 49 0.0017 20.0 11.0 110 11-126 8-126 (140)
263 2wqp_A Polysialic acid capsule 45.2 53 0.0018 25.1 6.0 78 25-107 93-175 (349)
264 2zf8_A MOTY, component of sodi 45.2 28 0.00096 25.6 4.4 46 3-48 184-243 (278)
265 1ui0_A Uracil-DNA glycosylase; 45.1 22 0.00075 24.9 3.6 39 10-48 31-82 (205)
266 3n53_A Response regulator rece 45.1 50 0.0017 20.1 7.1 106 13-126 4-120 (140)
267 1gvh_A Flavohemoprotein; oxido 44.7 24 0.00082 26.6 4.1 39 10-49 354-392 (396)
268 1t15_A Breast cancer type 1 su 44.7 70 0.0024 21.6 6.8 65 11-88 3-71 (214)
269 3c1a_A Putative oxidoreductase 44.3 19 0.00066 26.2 3.4 31 59-89 69-100 (315)
270 1cqx_A Flavohemoprotein; globi 44.3 22 0.00077 26.9 3.9 39 10-49 360-398 (403)
271 1yio_A Response regulatory pro 44.2 66 0.0023 21.2 9.0 105 13-124 5-118 (208)
272 3sqd_A PAX-interacting protein 44.2 25 0.00084 24.8 3.8 62 12-88 16-77 (219)
273 3fhl_A Putative oxidoreductase 44.1 11 0.00038 28.3 2.1 73 5-89 23-96 (362)
274 3qua_A Putative uncharacterize 44.1 42 0.0014 23.5 5.0 67 53-122 111-196 (199)
275 1weh_A Conserved hypothetical 43.9 52 0.0018 22.2 5.3 68 54-124 92-170 (171)
276 2ki0_A DS119; beta-alpha-beta, 43.7 4.9 0.00017 19.9 -0.0 28 16-46 8-35 (36)
277 1ys7_A Transcriptional regulat 43.2 72 0.0025 21.3 8.1 107 13-126 8-123 (233)
278 1e5p_A Aphrodisin; lipocalin, 43.1 36 0.0012 21.7 4.3 36 13-48 107-146 (151)
279 1dih_A Dihydrodipicolinate red 42.8 6.2 0.00021 29.0 0.4 34 55-88 68-102 (273)
280 3ing_A Homoserine dehydrogenas 42.6 30 0.001 26.0 4.3 32 59-90 82-118 (325)
281 3dv9_A Beta-phosphoglucomutase 42.5 73 0.0025 21.2 6.8 49 73-126 193-241 (247)
282 1kgs_A DRRD, DNA binding respo 42.4 73 0.0025 21.2 9.1 107 13-126 3-118 (225)
283 3qxg_A Inorganic pyrophosphata 42.3 76 0.0026 21.3 7.9 48 73-126 194-242 (243)
284 2oqr_A Sensory transduction pr 41.7 77 0.0026 21.2 10.7 108 13-127 5-120 (230)
285 2eix_A NADH-cytochrome B5 redu 41.7 20 0.00067 25.0 3.0 31 13-44 212-242 (243)
286 2amj_A Modulator of drug activ 41.6 27 0.00091 24.1 3.6 24 49-72 60-84 (204)
287 1l0b_A BRCA1; TANDEM-BRCT, thr 41.3 84 0.0029 21.5 6.9 64 12-88 7-74 (229)
288 3en0_A Cyanophycinase; serine 41.1 31 0.0011 25.6 4.1 41 9-49 23-66 (291)
289 2rjn_A Response regulator rece 41.1 63 0.0021 20.0 10.8 109 11-125 6-123 (154)
290 3n0r_A Response regulator; sig 40.9 98 0.0034 22.2 8.1 110 8-127 156-276 (286)
291 3b2n_A Uncharacterized protein 40.6 59 0.002 19.6 11.1 110 13-127 4-122 (133)
292 3mc1_A Predicted phosphatase, 40.5 76 0.0026 20.8 6.8 107 13-129 103-221 (226)
293 1f8y_A Nucleoside 2-deoxyribos 40.4 16 0.00056 24.5 2.3 38 54-91 73-115 (157)
294 2yq5_A D-isomer specific 2-hyd 40.4 1.1E+02 0.0037 23.1 7.1 74 14-90 3-78 (343)
295 1zud_1 Adenylyltransferase THI 40.3 96 0.0033 22.0 8.0 36 7-45 23-58 (251)
296 3s06_A Motility protein B; pep 40.2 73 0.0025 21.1 5.6 66 3-68 54-145 (166)
297 1ydh_A AT5G11950; structural g 40.2 95 0.0032 21.9 7.2 70 54-125 100-187 (216)
298 3kbq_A Protein TA0487; structu 40.1 25 0.00087 24.0 3.2 78 11-89 4-96 (172)
299 1qfj_A Protein (flavin reducta 39.8 22 0.00076 24.5 3.0 18 26-43 207-225 (232)
300 3nhm_A Response regulator; pro 39.3 61 0.0021 19.3 8.7 106 13-127 5-121 (133)
301 4ew6_A D-galactose-1-dehydroge 38.6 41 0.0014 24.9 4.4 41 49-89 71-112 (330)
302 1cf2_P Protein (glyceraldehyde 38.6 32 0.0011 25.9 3.9 86 3-91 16-111 (337)
303 2nu8_B SCS-beta, succinyl-COA 38.5 67 0.0023 24.7 5.7 98 29-128 273-387 (388)
304 1dzk_A PIG OBP, odorant-bindin 38.1 42 0.0015 21.5 4.1 35 14-48 114-152 (157)
305 1mb3_A Cell division response 38.1 61 0.0021 19.0 10.8 107 14-127 3-120 (124)
306 1bj7_A D 2; allergen, lipocali 38.1 43 0.0015 21.5 4.1 36 13-48 112-151 (156)
307 1s2d_A Purine trans deoxyribos 38.1 17 0.00059 24.7 2.1 36 54-89 76-116 (167)
308 3mw8_A Uroporphyrinogen-III sy 37.8 99 0.0034 21.3 6.6 104 10-121 118-237 (240)
309 1fdr_A Flavodoxin reductase; f 37.8 4.7 0.00016 28.4 -0.9 37 12-49 206-243 (248)
310 2a9o_A Response regulator; ess 37.7 60 0.0021 18.8 10.6 107 14-127 3-117 (120)
311 3crn_A Response regulator rece 37.6 67 0.0023 19.3 10.3 106 13-125 4-118 (132)
312 1wek_A Hypothetical protein TT 37.4 83 0.0029 22.1 5.7 70 54-125 126-213 (217)
313 2gfh_A Haloacid dehalogenase-l 37.3 69 0.0024 22.3 5.4 107 12-129 136-256 (260)
314 2hlv_A Odorant-binding protein 37.0 57 0.0019 21.0 4.6 35 14-48 115-153 (160)
315 1q0q_A 1-deoxy-D-xylulose 5-ph 36.9 1.2E+02 0.0042 23.7 6.9 35 58-92 100-135 (406)
316 4g1v_A Flavohemoglobin; three 36.9 46 0.0016 25.2 4.6 41 9-50 352-393 (399)
317 3kzx_A HAD-superfamily hydrola 36.8 90 0.0031 20.6 7.1 99 12-126 119-229 (231)
318 3orq_A N5-carboxyaminoimidazol 36.8 1.3E+02 0.0044 22.4 9.7 108 10-124 10-143 (377)
319 2nte_A BARD-1, BRCA1-associate 36.7 98 0.0034 21.0 6.6 53 24-88 14-66 (210)
320 4e38_A Keto-hydroxyglutarate-a 36.5 1.1E+02 0.0039 21.7 6.8 63 27-93 118-185 (232)
321 3tui_C Methionine import ATP-b 36.4 1.2E+02 0.0042 23.1 6.9 117 11-130 53-183 (366)
322 2ip4_A PURD, phosphoribosylami 36.1 1.4E+02 0.0047 22.5 8.0 73 51-124 51-134 (417)
323 3my7_A Alcohol dehydrogenase/a 35.7 1.5E+02 0.0052 22.9 7.9 57 28-88 153-212 (452)
324 3h5i_A Response regulator/sens 35.6 75 0.0026 19.3 7.6 107 12-125 5-121 (140)
325 3lab_A Putative KDPG (2-keto-3 35.4 1.2E+02 0.004 21.5 6.6 66 27-92 97-169 (217)
326 2r6h_A NADH:ubiquinone oxidore 35.2 29 0.00098 24.8 3.0 32 13-45 256-287 (290)
327 3ic5_A Putative saccharopine d 35.2 69 0.0024 18.8 9.0 40 51-90 61-101 (118)
328 3d8t_A Uroporphyrinogen-III sy 35.0 1.1E+02 0.0037 21.9 6.2 104 14-125 158-280 (286)
329 3ddh_A Putative haloacid dehal 35.0 37 0.0013 22.3 3.5 98 13-120 123-231 (234)
330 1zgz_A Torcad operon transcrip 34.9 69 0.0024 18.7 10.3 107 13-126 3-117 (122)
331 2qdx_A Ferredoxin reductase; o 34.9 58 0.002 22.7 4.6 36 12-48 212-254 (257)
332 4hkm_A Anthranilate phosphorib 34.5 58 0.002 24.6 4.8 45 76-122 102-147 (346)
333 1vl6_A Malate oxidoreductase; 34.2 94 0.0032 24.1 5.9 74 9-86 189-290 (388)
334 2yv1_A Succinyl-COA ligase [AD 34.1 60 0.0021 23.8 4.7 76 10-88 11-101 (294)
335 1mvo_A PHOP response regulator 33.6 78 0.0027 18.9 10.6 107 13-126 4-119 (136)
336 2dc1_A L-aspartate dehydrogena 33.6 59 0.002 22.6 4.4 73 14-90 2-82 (236)
337 2i2x_B MTAC, methyltransferase 33.5 1.3E+02 0.0044 21.4 10.5 95 25-128 140-244 (258)
338 2ayx_A Sensor kinase protein R 33.4 1.2E+02 0.0041 21.0 11.1 108 12-126 129-245 (254)
339 2zvy_A Chemotaxis protein MOTB 33.2 47 0.0016 22.7 3.8 46 3-49 82-146 (183)
340 1h05_A 3-dehydroquinate dehydr 33.1 1.1E+02 0.0037 20.5 5.6 60 26-88 34-100 (146)
341 3abi_A Putative uncharacterize 33.0 88 0.003 23.3 5.6 43 49-91 67-110 (365)
342 3aek_A Light-independent proto 32.9 96 0.0033 24.0 5.9 73 12-89 183-257 (437)
343 3a10_A Response regulator; pho 32.8 74 0.0025 18.4 8.7 103 14-125 3-114 (116)
344 3mjf_A Phosphoribosylamine--gl 32.6 84 0.0029 24.1 5.5 74 50-124 56-140 (431)
345 2zig_A TTHA0409, putative modi 32.4 70 0.0024 23.1 4.8 33 59-92 235-267 (297)
346 2vqe_B 30S ribosomal protein S 32.4 38 0.0013 24.8 3.3 31 58-88 157-187 (256)
347 2bgi_A Ferredoxin-NADP(H) redu 32.3 19 0.00064 25.7 1.6 37 12-49 226-262 (272)
348 1xs5_A 29 kDa protein, membran 32.2 1E+02 0.0035 21.8 5.6 55 8-64 96-169 (241)
349 3nep_X Malate dehydrogenase; h 32.2 44 0.0015 24.9 3.7 43 4-49 103-147 (314)
350 3o22_A Prostaglandin-H2 D-isom 31.9 71 0.0024 20.6 4.4 34 15-48 118-155 (162)
351 1zh2_A KDP operon transcriptio 31.8 78 0.0027 18.3 8.7 105 14-125 3-115 (121)
352 1wcw_A Uroporphyrinogen III sy 31.6 1.1E+02 0.0039 21.2 5.7 104 14-125 133-255 (261)
353 1krh_A Benzoate 1,2-dioxygenas 31.5 39 0.0014 24.8 3.3 36 11-47 300-335 (338)
354 3hv2_A Response regulator/HD d 31.5 94 0.0032 19.2 10.7 107 13-126 15-131 (153)
355 3cz5_A Two-component response 31.4 93 0.0032 19.1 10.1 110 12-127 5-124 (153)
356 1xki_A VON ebner'S gland prote 31.3 77 0.0026 20.4 4.5 34 15-48 109-146 (162)
357 3o9z_A Lipopolysaccaride biosy 31.3 40 0.0014 24.7 3.3 32 58-89 71-103 (312)
358 3r88_A Anthranilate phosphorib 31.3 58 0.002 25.0 4.3 45 76-122 123-168 (377)
359 3bio_A Oxidoreductase, GFO/IDH 31.2 29 0.00099 25.5 2.5 32 58-89 64-96 (304)
360 3sao_A Extracellular fatty aci 31.2 72 0.0025 20.6 4.4 34 15-48 111-148 (160)
361 3hhp_A Malate dehydrogenase; M 31.1 76 0.0026 23.5 4.9 45 4-49 103-150 (312)
362 2q62_A ARSH; alpha/beta, flavo 31.0 53 0.0018 23.5 3.9 39 50-88 89-142 (247)
363 3eod_A Protein HNR; response r 30.8 86 0.0029 18.6 11.3 109 11-126 6-124 (130)
364 1b0u_A Histidine permease; ABC 30.7 71 0.0024 22.8 4.5 115 11-130 31-173 (262)
365 3pdi_B Nitrogenase MOFE cofact 30.7 1.8E+02 0.0062 22.7 7.2 73 13-89 170-266 (458)
366 2nu8_A Succinyl-COA ligase [AD 30.6 89 0.003 22.7 5.1 77 10-87 5-93 (288)
367 3qk7_A Transcriptional regulat 30.4 1.4E+02 0.0047 20.8 6.6 64 26-90 30-96 (294)
368 4ina_A Saccharopine dehydrogen 30.2 1.8E+02 0.0061 22.1 9.3 82 4-88 17-106 (405)
369 3kcn_A Adenylate cyclase homol 30.2 98 0.0034 19.0 8.5 105 13-125 5-120 (151)
370 3don_A Shikimate dehydrogenase 30.0 1.4E+02 0.0046 21.7 6.0 55 12-69 117-185 (277)
371 1ofu_X SULA, hypothetical prot 29.9 66 0.0023 20.5 3.8 25 29-53 47-71 (119)
372 1gqo_A Dehydroquinase; dehydra 29.6 1.3E+02 0.0043 20.1 5.5 61 25-88 31-98 (143)
373 3cfy_A Putative LUXO repressor 29.4 98 0.0033 18.8 9.7 105 14-125 6-119 (137)
374 1omo_A Alanine dehydrogenase; 29.3 1.3E+02 0.0043 22.2 5.8 76 11-89 124-217 (322)
375 2l5p_A Lipocalin 12; beta barr 29.2 68 0.0023 21.3 4.0 34 15-48 130-167 (184)
376 2uyg_A 3-dehydroquinate dehydr 29.2 1.3E+02 0.0045 20.1 6.6 61 25-88 30-98 (149)
377 2m1z_A LMO0427 protein; homolo 29.0 32 0.0011 21.7 2.1 76 25-127 22-104 (106)
378 2ra6_A Trichosurin; lipocalin, 29.0 70 0.0024 20.7 4.0 35 14-48 125-163 (166)
379 1f06_A MESO-diaminopimelate D- 28.9 36 0.0012 25.1 2.7 36 55-90 54-90 (320)
380 2axq_A Saccharopine dehydrogen 28.9 2.1E+02 0.0071 22.4 10.0 41 50-90 79-120 (467)
381 2yrx_A Phosphoribosylglycinami 28.9 1.7E+02 0.0058 22.3 6.7 73 51-124 73-156 (451)
382 3goe_A DNA repair protein RAD6 28.9 98 0.0034 18.6 4.1 34 11-45 20-54 (82)
383 4fk8_A Ferredoxin--NADP reduct 28.8 31 0.0011 24.4 2.3 36 12-48 228-263 (271)
384 3l3e_A DNA topoisomerase 2-bin 28.4 1E+02 0.0035 18.6 6.6 64 12-88 18-82 (107)
385 1ew3_A Allergen EQU C 1; lipoc 28.0 96 0.0033 19.7 4.5 36 13-48 112-151 (159)
386 2jtq_A Phage shock protein E; 27.9 87 0.003 17.7 4.7 37 10-48 39-75 (85)
387 1umk_A B5R, NADH-cytochrome B5 27.8 30 0.001 24.5 2.0 31 13-44 243-274 (275)
388 1gpj_A Glutamyl-tRNA reductase 27.6 2E+02 0.0069 21.8 7.8 66 10-78 165-249 (404)
389 3tnj_A Universal stress protei 27.5 1.1E+02 0.0038 18.8 5.9 65 26-90 74-147 (150)
390 2pl1_A Transcriptional regulat 27.4 95 0.0032 18.0 10.9 106 14-126 2-116 (121)
391 3st7_A Capsular polysaccharide 27.4 1.3E+02 0.0045 21.9 5.6 51 14-66 2-53 (369)
392 1xhf_A DYE resistance, aerobic 27.0 98 0.0034 18.0 10.3 107 13-126 4-118 (123)
393 3u3z_A Microcephalin; DNA repa 26.9 1.5E+02 0.0052 20.1 7.0 67 9-88 8-74 (199)
394 1oju_A MDH, malate dehydrogena 26.6 1.2E+02 0.0041 22.2 5.2 47 4-53 103-151 (294)
395 1a04_A Nitrate/nitrite respons 26.5 1.4E+02 0.0048 19.6 10.7 109 12-126 5-123 (215)
396 2yxb_A Coenzyme B12-dependent 26.2 1.4E+02 0.0049 19.6 9.0 96 25-126 35-143 (161)
397 3kff_A MUP 4, major urinary pr 26.0 98 0.0034 20.0 4.3 34 15-48 117-154 (162)
398 3rqi_A Response regulator prot 25.9 1.4E+02 0.0047 19.3 9.3 104 12-122 7-119 (184)
399 3zy2_A Putative GDP-fucose pro 25.9 1.6E+02 0.0054 22.7 5.8 66 14-82 282-348 (362)
400 3q9s_A DNA-binding response re 25.9 1.6E+02 0.0056 20.2 10.5 109 12-127 37-153 (249)
401 3l7i_A Teichoic acid biosynthe 25.8 51 0.0017 27.1 3.3 69 52-125 608-680 (729)
402 3t8y_A CHEB, chemotaxis respon 25.7 1.3E+02 0.0044 18.9 11.7 112 12-127 25-154 (164)
403 3do5_A HOM, homoserine dehydro 25.6 63 0.0021 24.2 3.5 44 49-93 71-119 (327)
404 1nv8_A HEMK protein; class I a 25.4 1.9E+02 0.0064 20.7 6.4 56 11-70 145-203 (284)
405 2csu_A 457AA long hypothetical 25.2 2.4E+02 0.0082 21.9 9.3 83 40-126 343-445 (457)
406 3iwt_A 178AA long hypothetical 25.2 1.5E+02 0.0052 19.6 5.4 39 26-67 43-89 (178)
407 3oj0_A Glutr, glutamyl-tRNA re 25.2 23 0.00079 22.5 0.9 32 56-87 77-108 (144)
408 3kbb_A Phosphorylated carbohyd 25.0 1.1E+02 0.0037 20.0 4.5 25 12-38 100-124 (216)
409 3tr6_A O-methyltransferase; ce 25.0 1.6E+02 0.0053 19.6 7.7 57 7-64 83-145 (225)
410 1jmv_A USPA, universal stress 24.9 1.2E+02 0.0042 18.4 6.4 64 26-90 67-138 (141)
411 3c97_A Signal transduction his 24.7 1.2E+02 0.0041 18.2 7.6 104 13-126 11-128 (140)
412 1gtz_A 3-dehydroquinate dehydr 24.7 1.6E+02 0.0056 19.8 5.2 60 26-88 38-105 (156)
413 2fp4_A Succinyl-COA ligase [GD 24.6 2.1E+02 0.0072 21.0 8.3 109 15-126 155-299 (305)
414 3p7m_A Malate dehydrogenase; p 24.5 83 0.0029 23.4 4.1 40 4-46 107-147 (321)
415 3sxu_B DNA polymerase III subu 24.5 66 0.0023 21.2 3.1 35 12-46 37-73 (138)
416 1g5t_A COB(I)alamin adenosyltr 24.4 1.8E+02 0.0061 20.1 6.8 60 2-65 108-176 (196)
417 1gm6_A SAL, salivary lipocalin 24.4 83 0.0028 20.7 3.7 35 14-48 119-157 (175)
418 3rpe_A MDAB, modulator of drug 24.3 68 0.0023 22.6 3.4 54 14-68 28-92 (218)
419 3rot_A ABC sugar transporter, 24.2 1.8E+02 0.0063 20.2 7.9 62 26-90 23-94 (297)
420 3c8m_A Homoserine dehydrogenas 23.8 65 0.0022 24.0 3.3 40 49-90 78-122 (331)
421 2yvq_A Carbamoyl-phosphate syn 23.8 57 0.002 21.2 2.7 32 58-89 95-132 (143)
422 1vpl_A ABC transporter, ATP-bi 23.7 47 0.0016 23.8 2.4 115 11-130 40-166 (256)
423 2hzq_A Apolipoprotein D, APO-D 23.4 1.3E+02 0.0044 19.6 4.5 35 14-48 123-161 (174)
424 8abp_A L-arabinose-binding pro 23.4 1.9E+02 0.0065 20.0 6.5 62 26-90 22-90 (306)
425 1epa_A Epididymal retinoic aci 23.3 1.3E+02 0.0044 19.1 4.5 36 14-49 113-152 (164)
426 1lf7_A Complement protein C8ga 23.2 1.1E+02 0.0038 20.1 4.2 34 15-48 128-165 (182)
427 1mld_A Malate dehydrogenase; o 23.2 1.1E+02 0.0039 22.4 4.6 45 4-49 102-149 (314)
428 2i4r_A V-type ATP synthase sub 23.1 82 0.0028 19.5 3.2 31 100-130 22-53 (102)
429 3f6c_A Positive transcription 23.1 1.2E+02 0.0043 17.8 10.3 110 13-127 2-119 (134)
430 1l7b_A DNA ligase; BRCT, autos 22.9 1.3E+02 0.0045 18.0 4.8 62 12-88 10-71 (92)
431 3khn_A MOTB protein, putative; 22.9 1.4E+02 0.0047 19.9 4.6 63 3-66 73-162 (174)
432 3lrx_A Putative hydrogenase; a 22.8 66 0.0023 21.0 2.9 26 12-38 113-138 (158)
433 3olc_X DNA topoisomerase 2-bin 22.8 2.3E+02 0.0077 20.7 6.1 63 12-88 202-264 (298)
434 1v8b_A Adenosylhomocysteinase; 22.7 2.1E+02 0.0071 22.7 6.2 63 60-122 71-142 (479)
435 3k9c_A Transcriptional regulat 22.7 2E+02 0.0067 20.0 6.0 61 26-90 31-96 (289)
436 3q87_B N6 adenine specific DNA 22.7 1.6E+02 0.0054 19.0 4.8 35 4-38 108-142 (170)
437 1u8f_O GAPDH, glyceraldehyde-3 22.7 1.2E+02 0.004 22.7 4.6 88 3-90 18-123 (335)
438 3nv9_A Malic enzyme; rossmann 22.7 1.2E+02 0.0039 24.4 4.6 75 11-87 218-324 (487)
439 2kyr_A Fructose-like phosphotr 22.6 37 0.0013 21.6 1.5 76 25-127 25-107 (111)
440 3fzg_A 16S rRNA methylase; met 22.6 1.4E+02 0.0048 20.9 4.6 84 8-96 69-159 (200)
441 3ouz_A Biotin carboxylase; str 22.6 2.5E+02 0.0087 21.2 9.2 112 13-125 7-155 (446)
442 3ifg_A Succinate-semialdehyde 22.5 1.2E+02 0.0042 23.8 4.8 36 74-109 168-205 (484)
443 3l4r_A Allergen DOG 2, minor a 22.4 77 0.0026 20.9 3.2 36 14-49 116-155 (170)
444 2afr_A Cobalamin biosynthesis 22.4 2.2E+02 0.0075 20.4 7.3 24 82-105 190-213 (231)
445 2xcl_A Phosphoribosylamine--gl 22.3 2.5E+02 0.0085 21.0 8.5 50 75-124 78-135 (422)
446 4hv4_A UDP-N-acetylmuramate--L 22.3 2.8E+02 0.0096 21.6 9.1 72 13-87 23-110 (494)
447 2yyy_A Glyceraldehyde-3-phosph 22.2 51 0.0017 24.9 2.5 33 58-90 80-114 (343)
448 3cu5_A Two component transcrip 22.2 1.4E+02 0.0048 18.1 8.6 108 14-125 4-120 (141)
449 3u62_A Shikimate dehydrogenase 22.1 2E+02 0.0068 20.4 5.6 55 11-69 108-176 (253)
450 2pv7_A T-protein [includes: ch 22.1 2.2E+02 0.0076 20.3 6.9 63 14-80 23-86 (298)
451 3ufx_B Succinyl-COA synthetase 22.0 2.7E+02 0.0092 21.3 6.8 110 13-127 248-375 (397)
452 3rnm_E Lipoamide acyltransfera 22.0 68 0.0023 17.8 2.4 33 25-57 11-46 (58)
453 4ex8_A ALNA; alpha/beta/alpha- 21.9 50 0.0017 25.0 2.3 20 72-91 22-41 (316)
454 3fiq_A OBP1, RCG36470, odorant 21.9 49 0.0017 21.6 2.1 24 25-48 129-152 (157)
455 1uz5_A MOEA protein, 402AA lon 21.9 1.2E+02 0.0041 23.4 4.5 72 25-99 209-311 (402)
456 3hdj_A Probable ornithine cycl 21.8 2.2E+02 0.0077 20.9 6.0 82 6-89 115-213 (313)
457 1vhc_A Putative KHG/KDPG aldol 21.8 2.1E+02 0.0072 20.0 7.6 61 27-93 101-168 (224)
458 1uxt_A Glyceraldehyde-3-phosph 21.8 1.8E+02 0.0063 22.9 5.7 43 67-109 165-214 (501)
459 3luf_A Two-component system re 21.8 2.1E+02 0.0071 19.9 10.1 109 11-126 123-243 (259)
460 3qnm_A Haloacid dehalogenase-l 21.8 59 0.002 21.5 2.6 100 12-121 122-231 (240)
461 3fvv_A Uncharacterized protein 21.7 1.8E+02 0.0061 19.1 5.1 61 26-90 162-225 (232)
462 3l6u_A ABC-type sugar transpor 21.6 2E+02 0.0069 19.7 7.6 63 26-90 28-97 (293)
463 3lp8_A Phosphoribosylamine-gly 21.6 1.6E+02 0.0054 22.6 5.3 73 50-124 72-156 (442)
464 3p2y_A Alanine dehydrogenase/p 21.5 2.8E+02 0.0095 21.3 6.9 75 10-88 182-301 (381)
465 3gvi_A Malate dehydrogenase; N 21.5 98 0.0034 23.1 3.9 40 4-46 109-149 (324)
466 3jyo_A Quinate/shikimate dehyd 21.4 2.3E+02 0.0079 20.4 5.9 36 11-49 126-161 (283)
467 4g9b_A Beta-PGM, beta-phosphog 21.4 49 0.0017 22.7 2.1 18 73-90 177-194 (243)
468 3o1i_D Periplasmic protein TOR 21.4 2.1E+02 0.0071 19.7 6.8 61 26-90 25-95 (304)
469 3umc_A Haloacid dehalogenase; 21.3 1.6E+02 0.0054 19.6 4.8 106 13-122 136-250 (254)
470 2xst_A Lipocalin 15; transport 21.1 88 0.003 19.8 3.2 34 14-47 119-156 (161)
471 2zov_A Chemotaxis protein MOTB 21.1 73 0.0025 22.3 2.9 46 3-49 93-157 (210)
472 4a5o_A Bifunctional protein fo 21.0 84 0.0029 23.3 3.4 49 10-58 35-86 (286)
473 2xzm_F EIF1; ribosome, transla 20.9 1.1E+02 0.0036 19.0 3.4 25 23-47 76-101 (101)
474 4gim_A Pseudouridine-5'-phosph 20.9 54 0.0018 25.0 2.3 21 71-91 36-56 (335)
475 3nb3_A Outer membrane protein 20.7 21 0.00071 26.3 0.0 46 3-48 241-301 (346)
476 2cok_A Poly [ADP-ribose] polym 20.7 1.7E+02 0.0057 18.4 6.1 65 12-89 13-78 (113)
477 3kq0_A Alpha-1-acid glycoprote 20.6 83 0.0028 21.0 3.1 35 14-48 123-161 (192)
478 3umg_A Haloacid dehalogenase; 20.6 1.8E+02 0.0063 19.1 5.0 108 13-124 132-248 (254)
479 1b0a_A Protein (fold bifunctio 20.6 1.1E+02 0.0038 22.7 4.0 48 11-59 34-85 (288)
480 4eun_A Thermoresistant glucoki 20.5 1E+02 0.0034 20.5 3.5 31 6-36 23-54 (200)
481 2pr7_A Haloacid dehalogenase/e 20.5 77 0.0026 19.0 2.7 16 74-89 103-118 (137)
482 3g1w_A Sugar ABC transporter; 20.5 2.2E+02 0.0075 19.7 6.9 62 26-90 24-94 (305)
483 2l76_A Nfatc2-interacting prot 20.4 1.2E+02 0.004 18.8 3.4 22 24-45 43-64 (95)
484 3cbc_A Neutrophil gelatinase-a 20.2 1.3E+02 0.0045 19.9 4.1 35 14-48 154-192 (198)
485 4dvc_A Thiol:disulfide interch 20.2 84 0.0029 20.2 3.0 16 112-127 167-182 (184)
486 3ff5_A PEX14P, peroxisomal bio 20.1 57 0.002 18.0 1.8 18 113-130 7-24 (54)
487 3s26_A Neutrophil gelatinase-a 20.0 81 0.0028 21.1 3.0 24 25-48 151-174 (190)
488 3i53_A O-methyltransferase; CO 20.0 2.1E+02 0.007 20.6 5.4 57 5-66 186-242 (332)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=100.00 E-value=2.4e-35 Score=247.35 Aligned_cols=130 Identities=73% Similarity=1.155 Sum_probs=124.8
Q ss_pred ChHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 1 MSDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 1 ~~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
++|++||+++||++|+++..+...++.+++.++++|++++||+|.+..+.++|++.|+.+||+|||||++||+|++||||
T Consensus 541 ~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~ 620 (723)
T 4gyw_A 541 QMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLW 620 (723)
T ss_dssp HHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCCCeEEeCCCCcCCHHHHHHHHH
Confidence 37999999999999999997656788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
|||||||+.|+.+++|+++++|+.+|+++||+.|.++|+++|++|++|++
T Consensus 621 ~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~ 670 (723)
T 4gyw_A 621 AGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLE 670 (723)
T ss_dssp TTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHH
T ss_pred cCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999999864
No 2
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.97 E-value=9.5e-32 Score=221.56 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=114.6
Q ss_pred ChHHHHHhhCCCcEEEE--eec-CcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHH
Q psy15363 1 MSDIFVLKAVPNSILWL--LKF-PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMD 77 (130)
Q Consensus 1 ~~w~~il~~~P~a~l~i--~g~-~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lE 77 (130)
++|++|++++|+++|++ +|. .+..... .+.+.++|++ +||+|.|.++.+++++.|+.+||||||||++||+|++|
T Consensus 459 ~~WarIL~~vP~s~L~l~~~g~~~g~~~~~-~~~~~~~GI~-~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~GgtTtlE 536 (631)
T 3q3e_A 459 EALKAIRDRAKVKVHFHFALGQSNGITHPY-VERFIKSYLG-DSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIID 536 (631)
T ss_dssp HHHHHHHHHCSSEEEEEEEESSCCGGGHHH-HHHHHHHHHG-GGEEEECCCCHHHHHHHHHTCSEEECCSSSCCSHHHHH
T ss_pred HHHHHHHHhCCCcEEEEEecCCCchhhHHH-HHHHHHcCCC-ccEEEcCCCCHHHHHHHHhcCcEEEeCCcccCChHHHH
Confidence 37999999999998864 553 2233444 4456788998 89999999999999999999999999999999999999
Q ss_pred HHhcCCcEEecCCCchhhhhHHHHHHhcCCCCc-eecCHHHHHHHHHHhccCCC
Q psy15363 78 VLWTGTPVVTLPGETLASRVAASQLATLGCPEL-IARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 78 Ala~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~-va~~~~~y~~~a~~l~~d~e 130 (130)
|||||+||||+.|+.+++|+++++++.+|++|| |++|.++|+++|++|++|++
T Consensus 537 ALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~ 590 (631)
T 3q3e_A 537 MVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQ 590 (631)
T ss_dssp HHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHH
T ss_pred HHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999995 99999999999999999974
No 3
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.93 E-value=2.5e-25 Score=179.51 Aligned_cols=129 Identities=40% Similarity=0.597 Sum_probs=120.5
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhc
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWT 81 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~ 81 (130)
+|.+++++.|+++|+++|.+++.++.+++.++++|++++||+|+|+++.+++..+|+.+|+|+.|+++++|++++|||+|
T Consensus 396 a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma~ 475 (568)
T 2vsy_A 396 RMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWT 475 (568)
T ss_dssp HHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHT
T ss_pred HHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCCCCcHHHHHHHhC
Confidence 68999999999999999933677889999999999965899999999999999999999999999988889999999999
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
|+|||+.+|..+.++.+++++...|++++|.+|.++|++.+.+|++|++
T Consensus 476 G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~~~~~la~~i~~l~~~~~ 524 (568)
T 2vsy_A 476 GCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPA 524 (568)
T ss_dssp TCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHH
T ss_pred CCCEEeccCCCchHHHHHHHHHHCCChhhhcCCHHHHHHHHHHHhcCHH
Confidence 9999999999999999999999999999999999999999999998863
No 4
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.75 E-value=6e-18 Score=118.63 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=95.7
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHH--HcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQ--ALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~--~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
.+.+++.|+.+|+++|. ++..+.++++++ ++|+. ++|+|.|+++.+++..+|+.+|+++.|+. +++|++++|||+
T Consensus 42 i~a~~~l~~~~l~i~G~-~~~~~~l~~~~~~~~~~l~-~~v~~~g~~~~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama 119 (177)
T 2f9f_A 42 LEVFKKLQDEKLYIVGW-FSKGDHAERYARKIMKIAP-DNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMA 119 (177)
T ss_dssp HHHHHHCTTSCEEEEBC-CCTTSTHHHHHHHHHHHSC-TTEEEEESCCHHHHHHHHHHCSEEEECCSSCCSCHHHHHHHH
T ss_pred HHHHHhCCCcEEEEEec-CccHHHHHHHHHhhhcccC-CcEEEeCCCCHHHHHHHHHhCCEEEeCCCcCCCChHHHHHHH
Confidence 35566779999999996 566677888888 88997 99999999999999999999999998764 678999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCce-ecCHHHHHHHHHHhccCCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELI-ARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~v-a~~~~~y~~~a~~l~~d~e 130 (130)
||+|||+.+..... .++. .+..+++ ..|.+++++...++++|++
T Consensus 120 ~G~PvI~~~~~~~~-----e~i~-~~~~g~~~~~d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 120 SGKPVIAVNEGGFK-----ETVI-NEKTGYLVNADVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp TTCCEEEESSHHHH-----HHCC-BTTTEEEECSCHHHHHHHHHHHHHCTT
T ss_pred cCCcEEEeCCCCHH-----HHhc-CCCccEEeCCCHHHHHHHHHHHHhCHH
Confidence 99999998643221 1221 2444544 5899999999999998875
No 5
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.73 E-value=8.3e-18 Score=130.30 Aligned_cols=120 Identities=12% Similarity=0.031 Sum_probs=95.9
Q ss_pred hHHHHHhhCCCcEEEEeecCccc------HHHHHHHHHHcCCCCCC-------EEEecCCCHHHHHHhhccccEEEcCCC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVG------EANIQATAQALGLDQHR-------ILFSNVAAKEEHVRRGQLADVCLDTPL 68 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~------~~~l~~~~~~~g~~~~r-------v~f~g~~~~~~~~~~~~~~Dv~l~~~~ 68 (130)
+|.++.++.|+.+|+++|.+ +. ++.++++++++|++ ++ |.|.|+++.+++..+|+.||+++.|+.
T Consensus 205 a~~~l~~~~~~~~l~ivG~g-~~~~~~~l~~~~~~~~~~~~l~-~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~ 282 (413)
T 3oy2_A 205 AAARFISKYPDAKVRFLCNS-HHESKFDLHSIALRELVASGVD-NVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS 282 (413)
T ss_dssp HHHHHHHHCTTCCEEEEEEC-CTTCSCCHHHHHHHHHHHHTCS-CHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS
T ss_pred HHHHHHHhCCCcEEEEEeCC-cccchhhHHHHHHHHHHHcCcc-cccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC
Confidence 67888899999999999964 43 37899999999997 87 888899999999999999999998885
Q ss_pred -CCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhc-----------------CCCCcee-cCHHHHHHHHHHhccCC
Q psy15363 69 -CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATL-----------------GCPELIA-RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 69 -~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~-----------------g~~~~va-~~~~~y~~~a~~l~~d~ 129 (130)
+++|++++|||+||+|||+++..... .++..- |+.+++. .|.+++.+.. ++++|+
T Consensus 283 ~E~~~~~~lEAma~G~PvI~s~~~g~~-----e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~ 356 (413)
T 3oy2_A 283 GEGFGLCSAEGAVLGKPLIISAVGGAD-----DYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDE 356 (413)
T ss_dssp CCSSCHHHHHHHTTTCCEEEECCHHHH-----HHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSH
T ss_pred cCCCCcHHHHHHHcCCCEEEcCCCChH-----HHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCH
Confidence 57899999999999999998643221 222110 2222443 5899999999 999876
No 6
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.73 E-value=1.2e-17 Score=117.87 Aligned_cols=116 Identities=8% Similarity=0.021 Sum_probs=94.8
Q ss_pred hHHHHH--hhCCCcEEEEeecCcc--cHHHHHHHHHHcCCCCCCEEE-ecCCCHHHHHHhhccccEEEcCCC-CCCchHH
Q psy15363 2 SDIFVL--KAVPNSILWLLKFPAV--GEANIQATAQALGLDQHRILF-SNVAAKEEHVRRGQLADVCLDTPL-CNGHTTS 75 (130)
Q Consensus 2 ~w~~il--~~~P~a~l~i~g~~~~--~~~~l~~~~~~~g~~~~rv~f-~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~ 75 (130)
+|.++. ++.|+.+|+++|. ++ ..+.+++++++++ +|+| .|+++.+++..+|+.||+++.|+. +++|+++
T Consensus 58 a~~~l~~~~~~~~~~l~i~G~-~~~~~~~~l~~~~~~~~----~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~ 132 (200)
T 2bfw_A 58 AIEILSSKKEFQEMRFIIIGK-GDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVA 132 (200)
T ss_dssp HHHHHTTSGGGGGEEEEEECC-BCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHH
T ss_pred HHHHHHhhccCCCeEEEEECC-CChHHHHHHHHHHHhcC----CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHH
Confidence 466666 7779999999996 56 6778899998876 9999 999999999999999999998885 4679999
Q ss_pred HHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc-CC
Q psy15363 76 MDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT-DR 129 (130)
Q Consensus 76 lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~-d~ 129 (130)
+|||+||+|||+.+.... ..++ .+-.+++.+ |.+++.+...++++ |+
T Consensus 133 ~Ea~a~G~PvI~~~~~~~-----~e~~--~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 182 (200)
T 2bfw_A 133 LEAMCLGAIPIASAVGGL-----RDII--TNETGILVKAGDPGELANAILKALELSR 182 (200)
T ss_dssp HHHHHTTCEEEEESCHHH-----HHHC--CTTTCEEECTTCHHHHHHHHHHHHHCCH
T ss_pred HHHHHCCCCEEEeCCCCh-----HHHc--CCCceEEecCCCHHHHHHHHHHHHhcCH
Confidence 999999999999864311 2223 355666664 89999999999988 75
No 7
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.73 E-value=1.6e-17 Score=129.46 Aligned_cols=121 Identities=21% Similarity=0.212 Sum_probs=96.5
Q ss_pred hHHHHHhhCC--CcEEEEeecC---cccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHH
Q psy15363 2 SDIFVLKAVP--NSILWLLKFP---AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTS 75 (130)
Q Consensus 2 ~w~~il~~~P--~a~l~i~g~~---~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~ 75 (130)
+|.++.++.| +.+|+++|.. ++..+.++++++++|+. ++|+|+|+++.+++..+|+.||+++.|+. +++|+++
T Consensus 264 a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~-~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~ 342 (438)
T 3c48_A 264 AVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVE-KRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVA 342 (438)
T ss_dssp HHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCT-TTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHH
T ss_pred HHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCC-CcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHH
Confidence 5778888888 8999999951 35567899999999997 99999999999999999999999998875 5679999
Q ss_pred HHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccCC
Q psy15363 76 MDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDR 129 (130)
Q Consensus 76 lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d~ 129 (130)
+|||+||+|||+.+...... ++. .|..+++.+ |.+++.+...++++|+
T Consensus 343 ~Eama~G~PvI~~~~~~~~e-----~i~-~~~~g~~~~~~d~~~la~~i~~l~~~~ 392 (438)
T 3c48_A 343 MEAQASGTPVIAARVGGLPI-----AVA-EGETGLLVDGHSPHAWADALATLLDDD 392 (438)
T ss_dssp HHHHHTTCCEEEESCTTHHH-----HSC-BTTTEEEESSCCHHHHHHHHHHHHHCH
T ss_pred HHHHHcCCCEEecCCCChhH-----Hhh-CCCcEEECCCCCHHHHHHHHHHHHcCH
Confidence 99999999999987543322 221 244555554 8999999999988875
No 8
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.73 E-value=1.3e-17 Score=127.55 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=97.7
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC--------CCCch
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--------CNGHT 73 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--------~~~g~ 73 (130)
+|.++.++.|+.+|+++|. ++..+.+++++ .++. ++|+|+|+++.+++..+|+.||+++.|+. +++|+
T Consensus 219 a~~~l~~~~~~~~l~i~G~-g~~~~~l~~~~--~~~~-~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~ 294 (394)
T 3okp_A 219 AMPQVIAARPDAQLLIVGS-GRYESTLRRLA--TDVS-QNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGI 294 (394)
T ss_dssp HHHHHHHHSTTCEEEEECC-CTTHHHHHHHT--GGGG-GGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCH
T ss_pred HHHHHHhhCCCeEEEEEcC-chHHHHHHHHH--hccc-CeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCc
Confidence 5777888889999999996 67788888887 6776 89999999999999999999999998885 56799
Q ss_pred HHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccCC
Q psy15363 74 TSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDR 129 (130)
Q Consensus 74 ~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d~ 129 (130)
+++|||++|+|||+.+......-+. .| .+++.+ |.+++++...++++|+
T Consensus 295 ~~~Ea~a~G~PvI~~~~~~~~e~i~------~~-~g~~~~~~d~~~l~~~i~~l~~~~ 345 (394)
T 3okp_A 295 VYLEAQACGVPVIAGTSGGAPETVT------PA-TGLVVEGSDVDKLSELLIELLDDP 345 (394)
T ss_dssp HHHHHHHTTCCEEECSSTTGGGGCC------TT-TEEECCTTCHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCEEEeCCCChHHHHh------cC-CceEeCCCCHHHHHHHHHHHHhCH
Confidence 9999999999999987654433322 24 666655 8999999999998875
No 9
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.73 E-value=1.6e-17 Score=128.94 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=96.8
Q ss_pred hHHHHHhhCCCcEEEEeecCccc-----HHHHHHHHHHcCCCCCCEEEecCCC---HHHHHHhhccccEEEcCCC-CCCc
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAA---KEEHVRRGQLADVCLDTPL-CNGH 72 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~-----~~~l~~~~~~~g~~~~rv~f~g~~~---~~~~~~~~~~~Dv~l~~~~-~~~g 72 (130)
+|.++.++.|+.+|+++|+ ++. .+.++++++++|+. ++|+|+|+++ .+++..+|+.+|+++.|+. +++|
T Consensus 252 a~~~l~~~~~~~~l~i~G~-g~~~~~~~~~~l~~~~~~~~~~-~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~ 329 (416)
T 2x6q_A 252 IYRKVKEKIPGVQLLLVGV-MAHDDPEGWIYFEKTLRKIGED-YDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFG 329 (416)
T ss_dssp HHHHHHHHCTTCEEEEEEC-CCTTCHHHHHHHHHHHHHHTTC-TTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSC
T ss_pred HHHHHHHhCCCeEEEEEec-CcccchhHHHHHHHHHHHhCCC-CcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCc
Confidence 5778888899999999997 432 56788899999997 9999999654 7889999999999998875 5679
Q ss_pred hHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 73 TTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 73 ~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
++++|||+||+|||+.+.... ..++ ..|..+++.+|.+++.+...++++|+
T Consensus 330 ~~~lEAma~G~PvI~~~~~g~-----~e~i-~~~~~g~l~~d~~~la~~i~~ll~~~ 380 (416)
T 2x6q_A 330 LTVTEAMWKGKPVIGRAVGGI-----KFQI-VDGETGFLVRDANEAVEVVLYLLKHP 380 (416)
T ss_dssp HHHHHHHHTTCCEEEESCHHH-----HHHC-CBTTTEEEESSHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHcCCCEEEccCCCC-----hhhe-ecCCCeEEECCHHHHHHHHHHHHhCH
Confidence 999999999999999874311 1222 12556777779999999999998875
No 10
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.70 E-value=2.7e-17 Score=113.16 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=86.6
Q ss_pred hhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCC-cE
Q psy15363 8 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGT-PV 85 (130)
Q Consensus 8 ~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~-Pv 85 (130)
++.|+.+|+++|. ++..+.++++++++|+ ++.| |+++.+++..+|+.||+++.|+. +++|++++|||+||+ ||
T Consensus 28 ~~~~~~~l~i~G~-g~~~~~~~~~~~~~~~---~v~~-g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPv 102 (166)
T 3qhp_A 28 KYKQDIVLLLKGK-GPDEKKIKLLAQKLGV---KAEF-GFVNSNELLEILKTCTLYVHAANVESEAIACLEAISVGIVPV 102 (166)
T ss_dssp TTGGGEEEEEECC-STTHHHHHHHHHHHTC---EEEC-CCCCHHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEE
T ss_pred ccCCCeEEEEEeC-CccHHHHHHHHHHcCC---eEEE-eecCHHHHHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcE
Confidence 3458999999996 6788899999999986 8999 99999999999999999998885 567999999999997 99
Q ss_pred EecC-CCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 86 VTLP-GETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 86 V~~~-g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
|++. ......-+. ..+. -+...|.+++.+...++++|+
T Consensus 103 i~~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~i~~l~~~~ 141 (166)
T 3qhp_A 103 IANSPLSATRQFAL-----DERS-LFEPNNAKDLSAKIDWWLENK 141 (166)
T ss_dssp EECCTTCGGGGGCS-----SGGG-EECTTCHHHHHHHHHHHHHCH
T ss_pred EeeCCCCchhhhcc-----CCce-EEcCCCHHHHHHHHHHHHhCH
Confidence 9943 332221111 1111 223368999999999988875
No 11
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.68 E-value=8.1e-17 Score=123.75 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=95.4
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC--CCCCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP--LCNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~--~~~~g~~~lEAl 79 (130)
+|.++.++.|+.+|+++|. ++. +.++++++++ . ++|.|.|+++.+++..+|+.+|+++.|+ .+++|++++|||
T Consensus 230 a~~~l~~~~~~~~l~i~G~-~~~-~~l~~~~~~~--~-~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~ 304 (406)
T 2gek_A 230 ALPKLVARFPDVEILIVGR-GDE-DELREQAGDL--A-GHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAM 304 (406)
T ss_dssp HHHHHHTTSTTCEEEEESC-SCH-HHHHHHTGGG--G-GGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHH
T ss_pred HHHHHHHHCCCeEEEEEcC-CcH-HHHHHHHHhc--c-CcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHH
Confidence 5677778889999999996 455 7888888876 3 8999999999999999999999999885 467799999999
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
+||+|||+.+..... .++. .|..+++. .|.+++++...++++|+
T Consensus 305 a~G~PvI~~~~~~~~-----e~i~-~~~~g~~~~~~d~~~l~~~i~~l~~~~ 350 (406)
T 2gek_A 305 AAGTAVVASDLDAFR-----RVLA-DGDAGRLVPVDDADGMAAALIGILEDD 350 (406)
T ss_dssp HHTCEEEECCCHHHH-----HHHT-TTTSSEECCTTCHHHHHHHHHHHHHCH
T ss_pred HcCCCEEEecCCcHH-----HHhc-CCCceEEeCCCCHHHHHHHHHHHHcCH
Confidence 999999998753222 2222 25566666 68999999999998875
No 12
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.68 E-value=3.5e-16 Score=120.95 Aligned_cols=118 Identities=7% Similarity=0.013 Sum_probs=95.3
Q ss_pred hHHHHHhhC--CCcEEEEeecCcccH--HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHH
Q psy15363 2 SDIFVLKAV--PNSILWLLKFPAVGE--ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSM 76 (130)
Q Consensus 2 ~w~~il~~~--P~a~l~i~g~~~~~~--~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~l 76 (130)
+|.++.++. |+.+|+++|. ++.. +.+++++++++ +++.|.|+++.+++..+|+.||+++.|+. +++|++++
T Consensus 273 a~~~l~~~~~~~~~~l~i~G~-g~~~~~~~l~~~~~~~~---~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~ 348 (439)
T 3fro_A 273 AIEILSSKKEFQEMRFIIIGK-GDPELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVAL 348 (439)
T ss_dssp HHHHHHTSGGGGGEEEEEECC-CCHHHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHH
T ss_pred HHHHHHhcccCCCeEEEEEcC-CChhHHHHHHHHHhhcC---CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHH
Confidence 466666666 9999999996 5655 88999999988 68999999999999999999999998875 56799999
Q ss_pred HHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc-CCC
Q psy15363 77 DVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT-DRD 130 (130)
Q Consensus 77 EAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~-d~e 130 (130)
|||+||+|||+++..... .++. .| .+++.+ |.+++.+...++++ |++
T Consensus 349 EAma~G~Pvi~s~~~~~~-----e~~~-~~-~g~~~~~~d~~~la~~i~~ll~~~~~ 398 (439)
T 3fro_A 349 EAMCLGAIPIASAVGGLR-----DIIT-NE-TGILVKAGDPGELANAILKALELSRS 398 (439)
T ss_dssp HHHHTTCEEEEESSTHHH-----HHCC-TT-TCEEECTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHCCCCeEEcCCCCcc-----eeEE-cC-ceEEeCCCCHHHHHHHHHHHHhcCHH
Confidence 999999999998654222 2222 25 565554 89999999999988 764
No 13
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.67 E-value=9.7e-17 Score=127.63 Aligned_cols=121 Identities=9% Similarity=-0.012 Sum_probs=93.7
Q ss_pred hHHHHHhhCCCc-EEEEeecC-cc----------c---HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----cE
Q psy15363 2 SDIFVLKAVPNS-ILWLLKFP-AV----------G---EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----DV 62 (130)
Q Consensus 2 ~w~~il~~~P~a-~l~i~g~~-~~----------~---~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----Dv 62 (130)
+|.++.++.|+. +|+++|+. ++ . .+.++++++++|+. ++|+|+|+++.+++..+|+.| |+
T Consensus 283 a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~-~~V~~~G~v~~~~~~~~~~~a~~~~dv 361 (499)
T 2r60_A 283 AYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCR-GKVSMFPLNSQQELAGCYAYLASKGSV 361 (499)
T ss_dssp HHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCB-TTEEEEECCSHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCC-ceEEECCCCCHHHHHHHHHhcCcCCCE
Confidence 345555555654 78888851 22 1 67899999999997 999999999999999999999 99
Q ss_pred EEcCCC-CCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 63 CLDTPL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 63 ~l~~~~-~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
++.|+. +++|++++|||+||+|||+++...... ++. .|..+++. .|.+++.+...++++|+
T Consensus 362 ~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e-----~v~-~~~~g~l~~~~d~~~la~~i~~ll~~~ 425 (499)
T 2r60_A 362 FALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAE-----ILD-GGKYGVLVDPEDPEDIARGLLKAFESE 425 (499)
T ss_dssp EEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHH-----HTG-GGTSSEEECTTCHHHHHHHHHHHHSCH
T ss_pred EEECcccCCCCcHHHHHHHcCCCEEEecCCCHHH-----Hhc-CCceEEEeCCCCHHHHHHHHHHHHhCH
Confidence 998875 567999999999999999987542222 222 24456554 48899999999998875
No 14
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.66 E-value=2e-16 Score=124.86 Aligned_cols=113 Identities=8% Similarity=-0.041 Sum_probs=88.8
Q ss_pred hHHHHHhhCCC---cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHH
Q psy15363 2 SDIFVLKAVPN---SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMD 77 (130)
Q Consensus 2 ~w~~il~~~P~---a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lE 77 (130)
+|+++.++.|+ .+|+++|+ ++.+ .++|+. ++|+|+|.++.+++..+|+.||+|+.|+. +++|++++|
T Consensus 263 A~~~l~~~~~~~~~~~l~ivG~-~~~~-------~~l~~~-~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lE 333 (413)
T 2x0d_A 263 ALKIFVQKYDRSNEWKIISVGE-KHKD-------IALGKG-IHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLE 333 (413)
T ss_dssp HHHHHHHHCTTGGGCEEEEEES-CCCC-------EEEETT-EEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHH
T ss_pred HHHHHHHhCCCCCceEEEEEcC-Cchh-------hhcCCc-CcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHH
Confidence 56777788886 89999996 4432 356776 89999999999999999999999998885 678999999
Q ss_pred HHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCCC
Q psy15363 78 VLWTGTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 78 Ala~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~e 130 (130)
|||||+|||+..+. ... ++ ..|.++++. .|++++.+...+|++|++
T Consensus 334 AmA~G~PVV~~~~g-~~e-----~v-~~~~~G~lv~~~d~~~la~ai~~ll~~~~ 381 (413)
T 2x0d_A 334 MAHFGLRVITNKYE-NKD-----LS-NWHSNIVSLEQLNPENIAETLVELCMSFN 381 (413)
T ss_dssp HHHTTCEEEEECBT-TBC-----GG-GTBTTEEEESSCSHHHHHHHHHHHHHHTC
T ss_pred HHhCCCcEEEeCCC-cch-----hh-hcCCCEEEeCCCCHHHHHHHHHHHHcCHH
Confidence 99999999996543 111 12 225556543 589999999999998874
No 15
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.65 E-value=1.2e-16 Score=123.29 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=92.9
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
+|.++.++ ++.+|+++|. ++..+.++++++++|+. ++|.|+|+. +++..+|+.||+++.|+. +++|++++|||+
T Consensus 232 a~~~l~~~-~~~~l~i~G~-g~~~~~l~~~~~~~~l~-~~v~~~g~~--~~~~~~~~~adv~v~ps~~e~~~~~~~EAma 306 (394)
T 2jjm_A 232 AFAKIVTE-VDAKLLLVGD-GPEFCTILQLVKNLHIE-DRVLFLGKQ--DNVAELLAMSDLMLLLSEKESFGLVLLEAMA 306 (394)
T ss_dssp HHHHHHHS-SCCEEEEECC-CTTHHHHHHHHHTTTCG-GGBCCCBSC--SCTHHHHHTCSEEEECCSCCSCCHHHHHHHH
T ss_pred HHHHHHhh-CCCEEEEECC-chHHHHHHHHHHHcCCC-CeEEEeCch--hhHHHHHHhCCEEEeccccCCCchHHHHHHh
Confidence 45666655 6799999996 67888999999999997 999999964 678889999999998885 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d~ 129 (130)
||+|||+.+......-+ ..|..+++.+ |.+++.+...++++|+
T Consensus 307 ~G~PvI~~~~~~~~e~v------~~~~~g~~~~~~d~~~la~~i~~l~~~~ 351 (394)
T 2jjm_A 307 CGVPCIGTRVGGIPEVI------QHGDTGYLCEVGDTTGVADQAIQLLKDE 351 (394)
T ss_dssp TTCCEEEECCTTSTTTC------CBTTTEEEECTTCHHHHHHHHHHHHHCH
T ss_pred cCCCEEEecCCChHHHh------hcCCceEEeCCCCHHHHHHHHHHHHcCH
Confidence 99999998754332211 1144555554 8999999999998875
No 16
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.63 E-value=1.9e-16 Score=120.54 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=89.9
Q ss_pred HHHHHhh-CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHh
Q psy15363 3 DIFVLKA-VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLW 80 (130)
Q Consensus 3 w~~il~~-~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla 80 (130)
|.++.++ .|+.+|+++|. ++ .+.++++++++|+. ++|+|+|+. +++..+|+.||+++.|+. +++|++++|||+
T Consensus 218 ~~~l~~~~~~~~~l~i~G~-g~-~~~~~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a 292 (374)
T 2iw1_A 218 LASLPESLRHNTLLFVVGQ-DK-PRKFEALAEKLGVR-SNVHFFSGR--NDVSELMAAADLLLHPAYQEAAGIVLLEAIT 292 (374)
T ss_dssp HHTSCHHHHHTEEEEEESS-SC-CHHHHHHHHHHTCG-GGEEEESCC--SCHHHHHHHCSEEEECCSCCSSCHHHHHHHH
T ss_pred HHHhHhccCCceEEEEEcC-CC-HHHHHHHHHHcCCC-CcEEECCCc--ccHHHHHHhcCEEEeccccCCcccHHHHHHH
Confidence 3344444 47899999996 44 46789999999997 999999974 678899999999998875 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIAR---THKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~~d~ 129 (130)
||+|||+.+...... ++.. |..+++.+ |.+++.+...++++|+
T Consensus 293 ~G~Pvi~~~~~~~~e-----~i~~-~~~g~~~~~~~~~~~l~~~i~~l~~~~ 338 (374)
T 2iw1_A 293 AGLPVLTTAVCGYAH-----YIAD-ANCGTVIAEPFSQEQLNEVLRKALTQS 338 (374)
T ss_dssp HTCCEEEETTSTTTH-----HHHH-HTCEEEECSSCCHHHHHHHHHHHHHCH
T ss_pred CCCCEEEecCCCchh-----hhcc-CCceEEeCCCCCHHHHHHHHHHHHcCh
Confidence 999999987543333 2222 34455443 8999999999998875
No 17
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.63 E-value=3.1e-15 Score=113.30 Aligned_cols=106 Identities=17% Similarity=0.074 Sum_probs=86.2
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-----------CCCchHHHHHHh
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-----------CNGHTTSMDVLW 80 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-----------~~~g~~~lEAla 80 (130)
+.+|+++|. ++.++.++++++++| ++|+|+|+++.+++..+|+.||+++.|+. +++|++++|||+
T Consensus 188 ~~~l~i~G~-g~~~~~l~~~~~~~~---~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 188 GRRLVLAGP-AWEPEYFDEITRRYG---STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp TCCEEEESC-CCCHHHHHHHHHHHT---TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred CcEEEEEeC-cccHHHHHHHHHHhC---CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHh
Confidence 799999996 578889999988887 79999999999999999999999998876 567999999999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhc-CCCCceec-CHHHHHHHHHHhc
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATL-GCPELIAR-THKEYQDIAIRLG 126 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~-g~~~~va~-~~~~y~~~a~~l~ 126 (130)
||+|||+++..... .++... |..+++.+ |.+++.+...+++
T Consensus 264 ~G~PvI~s~~~~~~-----e~~~~~~~~~g~~~~~d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 264 SGTPVVGTGNGCLA-----EIVPSVGEVVGYGTDFAPDEARRTLAGLP 306 (342)
T ss_dssp TTCCEEECCTTTHH-----HHGGGGEEECCSSSCCCHHHHHHHHHTSC
T ss_pred cCCCEEEcCCCChH-----HHhcccCCCceEEcCCCHHHHHHHHHHHH
Confidence 99999998754322 233221 44566665 8899988887765
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.61 E-value=1.9e-15 Score=118.61 Aligned_cols=106 Identities=8% Similarity=0.007 Sum_probs=88.1
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHH--
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVL-- 79 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAl-- 79 (130)
+..+.++.|+.+|+++|+ |+ ++++|+. ++|+|+|+++.+++..+|+.||+|+.|+. +++|++++|||
T Consensus 238 ~~~l~~~~~~~~l~ivG~-g~--------~~~~~l~-~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~K 307 (406)
T 2hy7_A 238 FVVASKAFPQVTFHVIGS-GM--------GRHPGYG-DNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMK 307 (406)
T ss_dssp HHHHHHHCTTEEEEEESC-SS--------CCCTTCC-TTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHH
T ss_pred HHHHHHhCCCeEEEEEeC-ch--------HHhcCCC-CCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHH
Confidence 456778899999999996 44 5677886 99999999999999999999999998875 56799999999
Q ss_pred -----hcCCcEEecCCCchhhhhHHHHHHhcCCCCce-e--cCHHHHHHHHHHhccCCC
Q psy15363 80 -----WTGTPVVTLPGETLASRVAASQLATLGCPELI-A--RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 80 -----a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~v-a--~~~~~y~~~a~~l~~d~e 130 (130)
+||+|||+++. + ..|..+++ . .|.+++++...++++|++
T Consensus 308 l~eYla~G~PVIas~~-----------v-~~~~~G~l~v~~~d~~~la~ai~~ll~~~~ 354 (406)
T 2hy7_A 308 LLQYDFFGLPAVCPNA-----------V-VGPYKSRFGYTPGNADSVIAAITQALEAPR 354 (406)
T ss_dssp HHHHHHHTCCEEEEGG-----------G-TCSCSSEEEECTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHhhCCCcEEEehh-----------c-ccCcceEEEeCCCCHHHHHHHHHHHHhCcc
Confidence 99999999753 1 12445554 3 589999999999998875
No 19
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.58 E-value=1.9e-15 Score=128.38 Aligned_cols=120 Identities=10% Similarity=-0.058 Sum_probs=92.5
Q ss_pred hHHHHHhhCCCcEEEEeecCcc-----------cHHHHHHHHHHcCCCCCCEEEecCCC----HHHHHHhhc-cccEEEc
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV-----------GEANIQATAQALGLDQHRILFSNVAA----KEEHVRRGQ-LADVCLD 65 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~-----------~~~~l~~~~~~~g~~~~rv~f~g~~~----~~~~~~~~~-~~Dv~l~ 65 (130)
+|+++.+..|+++|+|+|+ ++ ..+.++++++++|+. ++|.|+|.++ .+++..+|+ .+|+|+.
T Consensus 593 A~~~L~~~~~~v~LvIvG~-g~~~~~~~~e~~~~~~~L~~li~~lgL~-~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~ 670 (816)
T 3s28_A 593 WYGKNTRLRELANLVVVGG-DRRKESKDNEEKAEMKKMYDLIEEYKLN-GQFRWISSQMDRVRNGELYRYICDTKGAFVQ 670 (816)
T ss_dssp HHHHCHHHHHHCEEEEECC-CTTSCCCCHHHHHHHHHHHHHHHHTTCB-BBEEEECCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhCCCeEEEEEeC-CCcccccchhhHHHHHHHHHHHHHcCCC-CcEEEccCccccCCHHHHHHHHHhcCeEEEE
Confidence 4566666678999999997 45 457889999999997 9999999554 578888888 6899998
Q ss_pred CCC-CCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc----cCC
Q psy15363 66 TPL-CNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG----TDR 129 (130)
Q Consensus 66 ~~~-~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~----~d~ 129 (130)
|+. +++|++++|||+||+|||+++......- + ..|..+++.+ |.+++++...+++ +|+
T Consensus 671 PS~~EgfglvllEAMA~G~PVIasd~GG~~Ei-----V-~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~ 735 (816)
T 3s28_A 671 PALYEAFGLTVVEAMTCGLPTFATCKGGPAEI-----I-VHGKSGFHIDPYHGDQAADTLADFFTKCKEDP 735 (816)
T ss_dssp CCSCBSSCHHHHHHHHTTCCEEEESSBTHHHH-----C-CBTTTBEEECTTSHHHHHHHHHHHHHHHHHCT
T ss_pred CCCccCccHHHHHHHHcCCCEEEeCCCChHHH-----H-ccCCcEEEeCCCCHHHHHHHHHHHHHHhccCH
Confidence 875 5789999999999999999865433222 2 2255666654 7889988886665 665
No 20
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.56 E-value=2.7e-14 Score=111.13 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=88.3
Q ss_pred hHHHHHhhCCCcEEEEeecCcccH-HHHHHHHHHcCCCC-------CCEEEecCCCHHHHHHhhccccEEEcCC-C-CCC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGE-ANIQATAQALGLDQ-------HRILFSNVAAKEEHVRRGQLADVCLDTP-L-CNG 71 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~-~~l~~~~~~~g~~~-------~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~-~~~ 71 (130)
+|+++.++.|+.+|+|+|+ ++.+ +.++++++++|+.. ++|.|.|.. +|+..+|+.||+++-++ . ..+
T Consensus 215 A~~~l~~~~p~~~lvivG~-g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~--~dl~~~y~~aDv~vl~ss~~e~g 291 (374)
T 2xci_A 215 AFKEIKKTYSSLKLILVPR-HIENAKIFEKKARDFGFKTSFFENLEGDVILVDRF--GILKELYPVGKIAIVGGTFVNIG 291 (374)
T ss_dssp HHHHHHTTCTTCEEEEEES-SGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSS--SCHHHHGGGEEEEEECSSSSSSC
T ss_pred HHHHHHhhCCCcEEEEECC-CHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCH--HHHHHHHHhCCEEEECCcccCCC
Confidence 5788888899999999996 5655 68999999999852 468888865 67889999999975443 3 346
Q ss_pred chHHHHHHhcCCcEEecCC-CchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccC
Q psy15363 72 HTTSMDVLWTGTPVVTLPG-ETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 72 g~~~lEAla~G~PvV~~~g-~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
|.+++|||+||+|||+.+. ..+..-. ..+...|. .+...|.+++.+...+|++|
T Consensus 292 g~~~lEAmA~G~PVI~~~~~~~~~e~~--~~~~~~G~-l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 292 GHNLLEPTCWGIPVIYGPYTHKVNDLK--EFLEKEGA-GFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp CCCCHHHHTTTCCEEECSCCTTSHHHH--HHHHHTTC-EEECCSHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHhCCCEEECCCccChHHHH--HHHHHCCC-EEEeCCHHHHHHHHHHHHhH
Confidence 8999999999999997532 2222211 11111232 23347899999999999887
No 21
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.55 E-value=4e-14 Score=111.90 Aligned_cols=115 Identities=14% Similarity=-0.060 Sum_probs=87.5
Q ss_pred hHHHHHhhCCCcEEEEeecCcc--cHHHHHHHHHHcCCCCCCEE-EecCCCHHHHHHhhccccEEEcCCC-CCCchHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV--GEANIQATAQALGLDQHRIL-FSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMD 77 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~--~~~~l~~~~~~~g~~~~rv~-f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lE 77 (130)
+|.++.+ ++.+|+++|+ ++ .++.+++++++++ ++|+ |.|. +.+++..+|+.||+|+.|+. +++|++++|
T Consensus 312 a~~~l~~--~~~~l~ivG~-g~~~~~~~l~~~~~~~~---~~v~~~~g~-~~~~~~~~~~~adv~v~pS~~E~~~~~~lE 384 (485)
T 1rzu_A 312 AVDEIVS--LGGRLVVLGA-GDVALEGALLAAASRHH---GRVGVAIGY-NEPLSHLMQAGCDAIIIPSRFEPCGLTQLY 384 (485)
T ss_dssp THHHHHH--TTCEEEEEEC-BCHHHHHHHHHHHHHTT---TTEEEEESC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHH
T ss_pred HHHHHHh--cCceEEEEeC-CchHHHHHHHHHHHhCC---CcEEEecCC-CHHHHHHHHhcCCEEEECcccCCCCHHHHH
Confidence 4666655 5899999996 44 4678889888875 7887 7887 77777899999999998885 577999999
Q ss_pred HHhcCCcEEecCCCchhhhhHHHHHHhcC---------CCCceec--CHHHHHHHHHHhc---cCC
Q psy15363 78 VLWTGTPVVTLPGETLASRVAASQLATLG---------CPELIAR--THKEYQDIAIRLG---TDR 129 (130)
Q Consensus 78 Ala~G~PvV~~~g~~~~~r~~~~~l~~~g---------~~~~va~--~~~~y~~~a~~l~---~d~ 129 (130)
||+||+|||+++.... ..++. .| ..+++.+ |.+++.+...+++ +|+
T Consensus 385 Ama~G~PvI~s~~gg~-----~e~v~-~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~ 444 (485)
T 1rzu_A 385 ALRYGCIPVVARTGGL-----ADTVI-DANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDP 444 (485)
T ss_dssp HHHHTCEEEEESSHHH-----HHHCC-BCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCH
T ss_pred HHHCCCCEEEeCCCCh-----hheec-ccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCH
Confidence 9999999999864322 12221 23 4566553 8899999988887 564
No 22
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.54 E-value=3.8e-14 Score=111.99 Aligned_cols=115 Identities=16% Similarity=-0.070 Sum_probs=87.3
Q ss_pred hHHHHHhhCCCcEEEEeecCcc--cHHHHHHHHHHcCCCCCCEE-EecCCCHHHHHHhhccccEEEcCCC-CCCchHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV--GEANIQATAQALGLDQHRIL-FSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMD 77 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~--~~~~l~~~~~~~g~~~~rv~-f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lE 77 (130)
+|+++.+ ++.+|+++|. ++ .++.+++++++++ ++|+ |.|. +.+++..+|+.||+|+.|+. +++|++++|
T Consensus 313 a~~~l~~--~~~~l~ivG~-g~~~~~~~l~~~~~~~~---~~v~~~~g~-~~~~~~~~~~~adv~v~pS~~E~~g~~~lE 385 (485)
T 2qzs_A 313 ALPGLLE--QGGQLALLGA-GDPVLQEGFLAAAAEYP---GQVGVQIGY-HEAFSHRIMGGADVILVPSRFEPCGLTQLY 385 (485)
T ss_dssp HHHHHHH--TTCEEEEEEE-ECHHHHHHHHHHHHHST---TTEEEEESC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHH
T ss_pred HHHHHhh--CCcEEEEEeC-CchHHHHHHHHHHHhCC---CcEEEeCCC-CHHHHHHHHHhCCEEEECCccCCCcHHHHH
Confidence 4555554 5899999996 44 4678889888875 6886 7887 77778899999999998885 567999999
Q ss_pred HHhcCCcEEecCCCchhhhhHHHHHHhcC---------CCCceec--CHHHHHHHHHHhc---cCC
Q psy15363 78 VLWTGTPVVTLPGETLASRVAASQLATLG---------CPELIAR--THKEYQDIAIRLG---TDR 129 (130)
Q Consensus 78 Ala~G~PvV~~~g~~~~~r~~~~~l~~~g---------~~~~va~--~~~~y~~~a~~l~---~d~ 129 (130)
||+||+|||+++.... ..++. .| ..+++.+ |.+++.+...+++ +|+
T Consensus 386 Ama~G~PvI~s~~gg~-----~e~v~-~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~ 445 (485)
T 2qzs_A 386 GLKYGTLPLVRRTGGL-----ADTVS-DCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRP 445 (485)
T ss_dssp HHHHTCEEEEESSHHH-----HHHCC-BCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTSH
T ss_pred HHHCCCCEEECCCCCc-----cceec-cCccccccccccceEEECCCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999864322 12222 23 5666654 8899999988887 564
No 23
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.50 E-value=2.1e-13 Score=103.98 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=82.4
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
+|.++.++.|+.++++ +. ++. +.+++.++++ +.. ++|+|+|.++..++..+|+.||+++.|+ |.+++|||+
T Consensus 228 a~~~l~~~~~~~~~i~-~~-g~~-~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~v~~s----g~~~lEA~a 299 (375)
T 3beo_A 228 AIKRLVDKHEDVQVVY-PV-HMN-PVVRETANDILGDY-GRIHLIEPLDVIDFHNVAARSYLMLTDS----GGVQEEAPS 299 (375)
T ss_dssp HHHHHHHHCTTEEEEE-EC-CSC-HHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHTCSEEEECC----HHHHHHHHH
T ss_pred HHHHHHhhCCCeEEEE-eC-CCC-HHHHHHHHHHhhcc-CCEEEeCCCCHHHHHHHHHhCcEEEECC----CChHHHHHh
Confidence 5677778889998655 53 333 2344444443 433 7999999999889999999999999776 566999999
Q ss_pred cCCcEEecCC-CchhhhhHHHHHHhcCCCCcee-cCHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPG-ETLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g-~~~~~r~~~~~l~~~g~~~~va-~~~~~y~~~a~~l~~d~ 129 (130)
||+|||+++. ... ..++ ..| .+++. .|.+++.+...++++|+
T Consensus 300 ~G~Pvi~~~~~~~~-----~e~v-~~g-~g~~v~~d~~~la~~i~~ll~~~ 343 (375)
T 3beo_A 300 LGVPVLVLRDTTER-----PEGI-EAG-TLKLAGTDEETIFSLADELLSDK 343 (375)
T ss_dssp HTCCEEECSSCCSC-----HHHH-HTT-SEEECCSCHHHHHHHHHHHHHCH
T ss_pred cCCCEEEecCCCCC-----ceee-cCC-ceEEcCCCHHHHHHHHHHHHhCh
Confidence 9999998842 212 2233 235 55544 68999999999998876
No 24
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.49 E-value=6.5e-14 Score=107.22 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=82.5
Q ss_pred hHHHHHhhCCCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
+|.++.++.|+.++++.+++++ .++.+++++ +.. ++|+|+|.++.+++..+|+.||+|+.++ + .+++|||+
T Consensus 228 a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~---~~~-~~v~~~g~~~~~~~~~~~~~ad~~v~~S---g-~~~lEA~a 299 (384)
T 1vgv_A 228 ALADIATTHQDIQIVYPVHLNPNVREPVNRIL---GHV-KNVILIDPQEYLPFVWLMNHAWLILTDS---G-GIQEEAPS 299 (384)
T ss_dssp HHHHHHHHCTTEEEEEECCBCHHHHHHHHHHH---TTC-TTEEEECCCCHHHHHHHHHHCSEEEESS---S-TGGGTGGG
T ss_pred HHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHh---hcC-CCEEEeCCCCHHHHHHHHHhCcEEEECC---c-chHHHHHH
Confidence 5677778889999888643232 334444443 323 7999999999899999999999999777 3 44899999
Q ss_pred cCCcEEecCC-CchhhhhHHHHHHhcCCCCcee-cCHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPG-ETLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g-~~~~~r~~~~~l~~~g~~~~va-~~~~~y~~~a~~l~~d~ 129 (130)
||+|||+.+. .... .++ ..| .+++. .|.+++.+...++++|+
T Consensus 300 ~G~PvI~~~~~~~~~-----e~v-~~g-~g~lv~~d~~~la~~i~~ll~d~ 343 (384)
T 1vgv_A 300 LGKPVLVMRDTTERP-----EAV-TAG-TVRLVGTDKQRIVEEVTRLLKDE 343 (384)
T ss_dssp GTCCEEEESSCCSCH-----HHH-HHT-SEEEECSSHHHHHHHHHHHHHCH
T ss_pred cCCCEEEccCCCCcc-----hhh-hCC-ceEEeCCCHHHHHHHHHHHHhCh
Confidence 9999999864 2221 223 236 55444 58999999999998876
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.44 E-value=4.8e-13 Score=102.39 Aligned_cols=112 Identities=12% Similarity=0.022 Sum_probs=81.3
Q ss_pred hHHHHHhhCCCcEEEEe-ecCcc-cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLL-KFPAV-GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~-g~~~~-~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl 79 (130)
+|.++.++.|+.++++. |. ++ .++.++++++ .. ++|+|+|+++..++..+|+.||+|+.++ +|+ ++|||
T Consensus 220 a~~~l~~~~~~~~lv~~~g~-~~~~~~~l~~~~~---~~-~~v~~~g~~g~~~~~~~~~~ad~~v~~S---~g~-~lEA~ 290 (376)
T 1v4v_A 220 ALKRVAEAFPHLTFVYPVHL-NPVVREAVFPVLK---GV-RNFVLLDPLEYGSMAALMRASLLLVTDS---GGL-QEEGA 290 (376)
T ss_dssp HHHHHHHHCTTSEEEEECCS-CHHHHHHHHHHHT---TC-TTEEEECCCCHHHHHHHHHTEEEEEESC---HHH-HHHHH
T ss_pred HHHHHHhhCCCeEEEEECCC-CHHHHHHHHHHhc---cC-CCEEEECCCCHHHHHHHHHhCcEEEECC---cCH-HHHHH
Confidence 46677778899998886 53 33 3556666543 23 7999999999889999999999998776 444 88999
Q ss_pred hcCCcEEecCC-CchhhhhHHHHHHhcCCCCcee-cCHHHHHHHHHHhccCC
Q psy15363 80 WTGTPVVTLPG-ETLASRVAASQLATLGCPELIA-RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 80 a~G~PvV~~~g-~~~~~r~~~~~l~~~g~~~~va-~~~~~y~~~a~~l~~d~ 129 (130)
+||+|||+.+. ..... +++ .|. +++. .|.+++.+...++++|+
T Consensus 291 a~G~PvI~~~~~~~~~~-----~~~-~g~-g~lv~~d~~~la~~i~~ll~d~ 335 (376)
T 1v4v_A 291 ALGVPVVVLRNVTERPE-----GLK-AGI-LKLAGTDPEGVYRVVKGLLENP 335 (376)
T ss_dssp HTTCCEEECSSSCSCHH-----HHH-HTS-EEECCSCHHHHHHHHHHHHTCH
T ss_pred HcCCCEEeccCCCcchh-----hhc-CCc-eEECCCCHHHHHHHHHHHHhCh
Confidence 99999998642 22211 222 242 3443 79999999999998886
No 26
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.36 E-value=4.6e-13 Score=109.00 Aligned_cols=84 Identities=11% Similarity=-0.056 Sum_probs=65.1
Q ss_pred hHHHHHhhCCCcEEEEeecCccc--HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHH
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVG--EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDV 78 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~--~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEA 78 (130)
+|++++++ +.+++++|. |+. ...++....++ . +++.|.+..+.++...+|+.||+|+.||. +++|++.+||
T Consensus 348 a~~~l~~~--~~~l~l~G~-G~~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E~fgl~~lEA 421 (536)
T 3vue_A 348 AIPELMQE--DVQIVLLGT-GKKKFEKLLKSMEEKY--P-GKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQG 421 (536)
T ss_dssp HHHHHTTS--SCEEEEECC-BCHHHHHHHHHHHHHS--T-TTEEEECSCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHH
T ss_pred HHHHhHhh--CCeEEEEec-cCchHHHHHHHHHhhc--C-CceEEEEeccHHHHHHHHHhhheeecccccCCCCHHHHHH
Confidence 45666554 567788885 332 33445554444 3 79999999999999999999999999886 5689999999
Q ss_pred HhcCCcEEecCCC
Q psy15363 79 LWTGTPVVTLPGE 91 (130)
Q Consensus 79 la~G~PvV~~~g~ 91 (130)
|+||+|||+++..
T Consensus 422 ma~G~PvI~s~~g 434 (536)
T 3vue_A 422 MRYGTPCACASTG 434 (536)
T ss_dssp HHTTCCEEECSCT
T ss_pred HHcCCCEEEcCCC
Confidence 9999999998754
No 27
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.35 E-value=3.8e-12 Score=96.74 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=75.0
Q ss_pred CcE-EEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 12 NSI-LWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 12 ~a~-l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
+.+ ++++|. ++ .+.+++.++++|+ ++|+|+|++ +++..+|+.||+++.|+ +|++++|||+||+|||+++.
T Consensus 212 ~~~~l~i~G~-~~-~~~l~~~~~~~~~--~~v~~~g~~--~~~~~~~~~ad~~v~~s---g~~~~~EAma~G~Pvi~~~~ 282 (364)
T 1f0k_A 212 SVTIWHQSGK-GS-QQSVEQAYAEAGQ--PQHKVTEFI--DDMAAAYAWADVVVCRS---GALTVSEIAAAGLPALFVPF 282 (364)
T ss_dssp GEEEEEECCT-TC-HHHHHHHHHHTTC--TTSEEESCC--SCHHHHHHHCSEEEECC---CHHHHHHHHHHTCCEEECCC
T ss_pred CcEEEEEcCC-ch-HHHHHHHHhhcCC--CceEEecch--hhHHHHHHhCCEEEECC---chHHHHHHHHhCCCEEEeeC
Confidence 577 556775 44 5788888999987 479999999 66788999999999876 38999999999999999865
Q ss_pred Cchh--hhhHHHHHHhcCCCCceec--C--HHHHHHHHHHh
Q psy15363 91 ETLA--SRVAASQLATLGCPELIAR--T--HKEYQDIAIRL 125 (130)
Q Consensus 91 ~~~~--~r~~~~~l~~~g~~~~va~--~--~~~y~~~a~~l 125 (130)
.... ....+..+...|. +++.+ | .+++.+...++
T Consensus 283 ~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 283 QHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp CCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 4221 1122334445566 54442 3 67777776666
No 28
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.34 E-value=5.3e-12 Score=101.70 Aligned_cols=119 Identities=15% Similarity=0.055 Sum_probs=82.7
Q ss_pred hHHHHHhhCCC----cEEEEeecC----ccc----HHHHHHHHHHc----CCC-CCCEEE-ecCCCHHHHHHhhccccEE
Q psy15363 2 SDIFVLKAVPN----SILWLLKFP----AVG----EANIQATAQAL----GLD-QHRILF-SNVAAKEEHVRRGQLADVC 63 (130)
Q Consensus 2 ~w~~il~~~P~----a~l~i~g~~----~~~----~~~l~~~~~~~----g~~-~~rv~f-~g~~~~~~~~~~~~~~Dv~ 63 (130)
+|.+++++.|+ .+|+++|.+ ++. ++.+++++.+. |.. ...|+| .|.++.+++.++|+.||+|
T Consensus 276 A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~ 355 (482)
T 1uqt_A 276 AYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVG 355 (482)
T ss_dssp HHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEE
T ss_pred HHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEE
Confidence 67888999886 679999853 122 23444444432 322 124664 6899999999999999999
Q ss_pred EcCCC-CCCchHHHHHHhcCC-----cEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 64 LDTPL-CNGHTTSMDVLWTGT-----PVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 64 l~~~~-~~~g~~~lEAla~G~-----PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
+.|+. +++|++++|||+||+ |||+........ .+. ++++. .|.+++.+...++++++
T Consensus 356 v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~--------~l~-~g~lv~p~d~~~lA~ai~~lL~~~ 420 (482)
T 1uqt_A 356 LVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAAN--------ELT-SALIVNPYDRDEVAAALDRALTMS 420 (482)
T ss_dssp EECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGG--------TCT-TSEEECTTCHHHHHHHHHHHHTCC
T ss_pred EECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHH--------HhC-CeEEECCCCHHHHHHHHHHHHcCC
Confidence 88875 678999999999997 788765221111 111 44544 38899999888888764
No 29
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.24 E-value=2.4e-11 Score=98.30 Aligned_cols=117 Identities=11% Similarity=0.003 Sum_probs=81.3
Q ss_pred hHHHHHhhCCC---cEEEEeecC----cccHH----HHHHHHHHc----CCCCCCEEEecCCCHHHHHHhhccccEEEcC
Q psy15363 2 SDIFVLKAVPN---SILWLLKFP----AVGEA----NIQATAQAL----GLDQHRILFSNVAAKEEHVRRGQLADVCLDT 66 (130)
Q Consensus 2 ~w~~il~~~P~---a~l~i~g~~----~~~~~----~l~~~~~~~----g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~ 66 (130)
+| +++++.|+ .+|+++|.+ ++..+ .+++++.+. |.. +|+|+|.++.+++.++|+.||+|+.|
T Consensus 302 Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~--~V~f~g~v~~~el~aly~~ADv~vv~ 378 (496)
T 3t5t_A 302 AF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD--TVRIDNDNDVNHTIACFRRADLLIFN 378 (496)
T ss_dssp HH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SEEEEECCCHHHHHHHHHHCSEEEEC
T ss_pred HH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc--CEEEeCCCCHHHHHHHHHhccEEEEC
Confidence 67 88999997 458888742 12223 344444433 432 89999999999999999999999888
Q ss_pred CC-CCCchHHHHHHhcC---CcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccCC
Q psy15363 67 PL-CNGHTTSMDVLWTG---TPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 67 ~~-~~~g~~~lEAla~G---~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d~ 129 (130)
+. +++|++.+|||+|| .|+|...-.. .+..+ |-+.++. .|.+++.+...++++++
T Consensus 379 SlrEGfgLv~~EamA~~~~~g~lVlSe~aG-----a~~~l---~~~allVnP~D~~~lA~AI~~aL~m~ 439 (496)
T 3t5t_A 379 STVDGQNLSTFEAPLVNERDADVILSETCG-----AAEVL---GEYCRSVNPFDLVEQAEAISAALAAG 439 (496)
T ss_dssp CSSBSCCSHHHHHHHHCSSCCEEEEETTBT-----THHHH---GGGSEEECTTBHHHHHHHHHHHHHCC
T ss_pred cccccCChhHHHHHHhCCCCCCEEEeCCCC-----CHHHh---CCCEEEECCCCHHHHHHHHHHHHcCC
Confidence 75 67899999999996 6666653221 12223 2234443 47888888888887765
No 30
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.21 E-value=6.7e-11 Score=92.65 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=79.9
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHH-cCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~-~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
++.++.++.|+.++++..++++ .+++.+++ .+.. ++|+|.+++++.++..+|+.||+++.++ ||+ .+||++
T Consensus 253 A~~~l~~~~~~~~~v~~~g~~~---~~~~~l~~~~~~~-~~v~~~~~lg~~~~~~l~~~ad~vv~~S---Gg~-~~EA~a 324 (396)
T 3dzc_A 253 ALITTAEQHPECQILYPVHLNP---NVREPVNKLLKGV-SNIVLIEPQQYLPFVYLMDRAHIILTDS---GGI-QEEAPS 324 (396)
T ss_dssp HHHHHHHHCTTEEEEEECCBCH---HHHHHHHHHTTTC-TTEEEECCCCHHHHHHHHHHCSEEEESC---SGG-GTTGGG
T ss_pred HHHHHHHhCCCceEEEEeCCCh---HHHHHHHHHHcCC-CCEEEeCCCCHHHHHHHHHhcCEEEECC---ccH-HHHHHH
Confidence 4667777889999888643222 23443333 3444 7999999999889999999999998665 344 499999
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
+|+|+|+++... +| ..++ ..|..-++..|.+++.+...+|++|+
T Consensus 325 ~G~PvV~~~~~~--~~--~e~v-~~G~~~lv~~d~~~l~~ai~~ll~d~ 368 (396)
T 3dzc_A 325 LGKPVLVMRETT--ER--PEAV-AAGTVKLVGTNQQQICDALSLLLTDP 368 (396)
T ss_dssp GTCCEEECCSSC--SC--HHHH-HHTSEEECTTCHHHHHHHHHHHHHCH
T ss_pred cCCCEEEccCCC--cc--hHHH-HcCceEEcCCCHHHHHHHHHHHHcCH
Confidence 999999974221 11 1222 23543344457899999988888775
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.20 E-value=7.1e-11 Score=92.85 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=79.8
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHH-cCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~-~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
++.++.++.|+.++++.+++++ .+++.+++ .+.. ++|+|++++++.++..+|+.||+++..+ ||. .+||++
T Consensus 247 a~~~l~~~~~~~~~v~~~~~~~---~~~~~l~~~~~~~-~~v~l~~~l~~~~~~~l~~~ad~vv~~S---Gg~-~~EA~a 318 (403)
T 3ot5_A 247 AVREIVESREDTELVYPMHLNP---AVREKAMAILGGH-ERIHLIEPLDAIDFHNFLRKSYLVFTDS---GGV-QEEAPG 318 (403)
T ss_dssp HHHHHHHHCTTEEEEEECCSCH---HHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHHEEEEEECC---HHH-HHHGGG
T ss_pred HHHHHHHhCCCceEEEecCCCH---HHHHHHHHHhCCC-CCEEEeCCCCHHHHHHHHHhcCEEEECC---ccH-HHHHHH
Confidence 4566777889999888754332 23444443 3544 7999999999999999999999998554 444 499999
Q ss_pred cCCcEEecCC-CchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 81 TGTPVVTLPG-ETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 81 ~G~PvV~~~g-~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
+|+|+|+.+. ..... .+ ..|..-++..|.++..+...++++|+
T Consensus 319 ~g~PvV~~~~~~~~~e-----~v-~~g~~~lv~~d~~~l~~ai~~ll~~~ 362 (403)
T 3ot5_A 319 MGVPVLVLRDTTERPE-----GI-EAGTLKLIGTNKENLIKEALDLLDNK 362 (403)
T ss_dssp TTCCEEECCSSCSCHH-----HH-HHTSEEECCSCHHHHHHHHHHHHHCH
T ss_pred hCCCEEEecCCCcchh-----he-eCCcEEEcCCCHHHHHHHHHHHHcCH
Confidence 9999999842 21211 22 23533344458999999888888775
No 32
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.01 E-value=9.2e-10 Score=84.57 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=78.1
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGT 83 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~ 83 (130)
.+. ++.|+.+++++++ +...+.++ ++. ++|+|.++++..+ ++..||+++. .+|++|++|||++|+
T Consensus 243 ~~~-~~~p~~~~v~~~~-~~~~~~l~------~~~-~~v~~~~~~~~~~---ll~~ad~~v~---~~G~~t~~Ea~~~G~ 307 (391)
T 3tsa_A 243 AAA-TELPGVEAVIAVP-PEHRALLT------DLP-DNARIAESVPLNL---FLRTCELVIC---AGGSGTAFTATRLGI 307 (391)
T ss_dssp HHH-HTSTTEEEEEECC-GGGGGGCT------TCC-TTEEECCSCCGGG---TGGGCSEEEE---CCCHHHHHHHHHTTC
T ss_pred HHh-ccCCCeEEEEEEC-Ccchhhcc------cCC-CCEEEeccCCHHH---HHhhCCEEEe---CCCHHHHHHHHHhCC
Confidence 344 5678889888875 33322221 343 8999999998654 4589999992 345579999999999
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec-----CHHHHHHHHHHhccCCC
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR-----THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~-----~~~~y~~~a~~l~~d~e 130 (130)
|+|+.+-.. .....+..+...|....+.. +.+++.+...++++|++
T Consensus 308 P~v~~p~~~-~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~ 358 (391)
T 3tsa_A 308 PQLVLPQYF-DQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTG 358 (391)
T ss_dssp CEEECCCST-THHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTH
T ss_pred CEEecCCcc-cHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHH
Confidence 999985421 22334556667777665554 68899999999998863
No 33
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.98 E-value=5.3e-09 Score=72.14 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=63.0
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
++|+|.++++..+++. +..||+++. .+|++|++|||++|+|+|+.+-... ....+..+...|..-++.. +.+
T Consensus 68 ~~v~~~~~~~~~~~l~-~~~ad~~I~---~~G~~t~~Ea~~~G~P~i~~p~~~~-Q~~na~~l~~~g~g~~~~~~~~~~~ 142 (170)
T 2o6l_A 68 LNTRLYKWIPQNDLLG-HPKTRAFIT---HGGANGIYEAIYHGIPMVGIPLFAD-QPDNIAHMKARGAAVRVDFNTMSST 142 (170)
T ss_dssp TTEEEESSCCHHHHHT-STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTTSEEECCTTTCCHH
T ss_pred CcEEEecCCCHHHHhc-CCCcCEEEE---cCCccHHHHHHHcCCCEEeccchhh-HHHHHHHHHHcCCeEEeccccCCHH
Confidence 6899999999876654 389999994 3677999999999999999975322 2333556666676544432 778
Q ss_pred HHHHHHHHhccCC
Q psy15363 117 EYQDIAIRLGTDR 129 (130)
Q Consensus 117 ~y~~~a~~l~~d~ 129 (130)
++.+...++++|+
T Consensus 143 ~l~~~i~~ll~~~ 155 (170)
T 2o6l_A 143 DLLNALKRVINDP 155 (170)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCH
Confidence 8888888888765
No 34
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=98.96 E-value=1.8e-09 Score=83.20 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=62.1
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
++|.|.|+++ +..+|..||+|+.+ +|+++++|||++|+|+|+.+... .....+..+...|...++.. |.+
T Consensus 292 ~~v~~~~~~~---~~~~l~~ad~~v~~---~g~~t~~Ea~a~G~P~v~~p~~~-~q~~~~~~v~~~g~g~~~~~~~~~~~ 364 (412)
T 3otg_A 292 ANVRLESWVP---QAALLPHVDLVVHH---GGSGTTLGALGAGVPQLSFPWAG-DSFANAQAVAQAGAGDHLLPDNISPD 364 (412)
T ss_dssp TTEEEESCCC---HHHHGGGCSEEEES---CCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEEECCGGGCCHH
T ss_pred CcEEEeCCCC---HHHHHhcCcEEEEC---CchHHHHHHHHhCCCEEecCCch-hHHHHHHHHHHcCCEEecCcccCCHH
Confidence 7999999995 55678899999943 34589999999999999986432 12233455666676655554 788
Q ss_pred HHHHHHHHhccCC
Q psy15363 117 EYQDIAIRLGTDR 129 (130)
Q Consensus 117 ~y~~~a~~l~~d~ 129 (130)
++.+...+|++|+
T Consensus 365 ~l~~ai~~ll~~~ 377 (412)
T 3otg_A 365 SVSGAAKRLLAEE 377 (412)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhCH
Confidence 9999999998875
No 35
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=98.95 E-value=2.6e-09 Score=82.52 Aligned_cols=98 Identities=13% Similarity=-0.027 Sum_probs=72.2
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC--------CCCchHHHHHHhc
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL--------CNGHTTSMDVLWT 81 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--------~~~g~~~lEAla~ 81 (130)
.|+.+|+++|+ |+.+ .+ ++|+|+|++|++++..+++.+|+.|-... ++.+..++|+|||
T Consensus 197 ~~~~~f~ivG~-G~~~----------~l--~nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~ 263 (339)
T 3rhz_A 197 KYDIPLKVYTW-QNVE----------LP--QNVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAA 263 (339)
T ss_dssp CCSSCEEEEES-CCCC----------CC--TTEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHH
T ss_pred CCCCeEEEEeC-Cccc----------Cc--CCEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHc
Confidence 38899999997 4543 23 39999999999999999988888875411 2457899999999
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
|+|||+........ ++...++ +++.++.+++.+....+.
T Consensus 264 G~PVI~~~~~~~~~-----~v~~~~~-G~~~~~~~e~~~~i~~l~ 302 (339)
T 3rhz_A 264 GIPVIVQEGIANQE-----LIENNGL-GWIVKDVEEAIMKVKNVN 302 (339)
T ss_dssp TCCEEEETTCTTTH-----HHHHHTC-EEEESSHHHHHHHHHHCC
T ss_pred CCCEEEccChhHHH-----HHHhCCe-EEEeCCHHHHHHHHHHhC
Confidence 99999987553322 3333333 566778888887776653
No 36
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=98.88 E-value=1.1e-08 Score=78.83 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=66.2
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
+.+++++++ +...+.++ .+. ++|+|.++++..+ ++..||+|+. .+|++|++|||++|+|+|+.+..
T Consensus 264 ~~~~v~~~~-~~~~~~l~------~~~-~~v~~~~~~~~~~---ll~~ad~~v~---~gG~~t~~Ea~~~G~P~v~~p~~ 329 (398)
T 4fzr_A 264 GFEVVVAVS-DKLAQTLQ------PLP-EGVLAAGQFPLSA---IMPACDVVVH---HGGHGTTLTCLSEGVPQVSVPVI 329 (398)
T ss_dssp TCEEEECCC-C--------------CC-TTEEEESCCCHHH---HGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCS
T ss_pred CCEEEEEeC-Ccchhhhc------cCC-CcEEEeCcCCHHH---HHhhCCEEEe---cCCHHHHHHHHHhCCCEEecCCc
Confidence 467777774 33333322 233 8999999997544 5667999992 45568999999999999998642
Q ss_pred chhhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhccCC
Q psy15363 92 TLASRVAASQLATLGCPELIAR---THKEYQDIAIRLGTDR 129 (130)
Q Consensus 92 ~~~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~~d~ 129 (130)
. .....+..+...|..-.+.. +.+++.+...++++|+
T Consensus 330 ~-~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~ 369 (398)
T 4fzr_A 330 A-EVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDS 369 (398)
T ss_dssp G-GGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCT
T ss_pred h-hHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCH
Confidence 1 22234556666677655543 6677888888888876
No 37
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=98.86 E-value=9.4e-09 Score=79.94 Aligned_cols=108 Identities=21% Similarity=0.209 Sum_probs=70.9
Q ss_pred HhhCCCcEE-EEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcE
Q psy15363 7 LKAVPNSIL-WLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 7 l~~~P~a~l-~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~Pv 85 (130)
+++.|+.++ +++|. ++..+.++ .+. ++|.|.|+++.. .+|+.||+|+.. +|.++++|||++|+|+
T Consensus 257 l~~~~~~~~~~~~G~-~~~~~~l~------~~~-~~v~~~~~~~~~---~~l~~ad~~v~~---~G~~t~~Ea~~~G~P~ 322 (430)
T 2iyf_A 257 FGNLPGWHLVLQIGR-KVTPAELG------ELP-DNVEVHDWVPQL---AILRQADLFVTH---AGAGGSQEGLATATPM 322 (430)
T ss_dssp HTTCTTEEEEEECC----CGGGGC------SCC-TTEEEESSCCHH---HHHTTCSEEEEC---CCHHHHHHHHHTTCCE
T ss_pred HhcCCCeEEEEEeCC-CCChHHhc------cCC-CCeEEEecCCHH---HHhhccCEEEEC---CCccHHHHHHHhCCCE
Confidence 344466676 45664 33332221 243 899999999865 568899999842 3558999999999999
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhccCC
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR---THKEYQDIAIRLGTDR 129 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~~d~ 129 (130)
|+.+-... ....+..+...|..-.+.. +.+++.+...++++|+
T Consensus 323 i~~p~~~~-q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 368 (430)
T 2iyf_A 323 IAVPQAVD-QFGNADMLQGLGVARKLATEEATADLLRETALALVDDP 368 (430)
T ss_dssp EECCCSHH-HHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCH
T ss_pred EECCCccc-hHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCH
Confidence 99865321 2223445555666444432 7788888888888775
No 38
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.81 E-value=3.8e-08 Score=77.02 Aligned_cols=112 Identities=12% Similarity=0.123 Sum_probs=77.0
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHc-C-CC-CCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQAL-G-LD-QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL 79 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~-g-~~-~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl 79 (130)
+.++.++. +..+++..+ +.+++.+++. | +. .++|.|.+++++.++..+|+.||+++..+ || ...||+
T Consensus 229 l~~l~~~~-~~~vv~p~~-----p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S---Gg-v~~EA~ 298 (385)
T 4hwg_A 229 LQMLIKEY-NFLIIFSTH-----PRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS---GT-ITEEAS 298 (385)
T ss_dssp HHHHHHHH-CCEEEEEEC-----HHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC---TT-HHHHHH
T ss_pred HHHHHhcC-CeEEEEECC-----hHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC---cc-HHHHHH
Confidence 34444444 566555443 2356666665 5 32 26899999999989999999999999443 33 579999
Q ss_pred hcCCcEEecCCCc-hhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCCC
Q psy15363 80 WTGTPVVTLPGET-LASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 80 a~G~PvV~~~g~~-~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~e 130 (130)
++|+|+|+.+... ... .+ ..|-.-++..|.++..+...+|++|++
T Consensus 299 alG~Pvv~~~~~ter~e-----~v-~~G~~~lv~~d~~~i~~ai~~ll~d~~ 344 (385)
T 4hwg_A 299 ILNLPALNIREAHERPE-----GM-DAGTLIMSGFKAERVLQAVKTITEEHD 344 (385)
T ss_dssp HTTCCEEECSSSCSCTH-----HH-HHTCCEECCSSHHHHHHHHHHHHTTCB
T ss_pred HcCCCEEEcCCCccchh-----hh-hcCceEEcCCCHHHHHHHHHHHHhChH
Confidence 9999999986532 122 12 225444555689999999999998863
No 39
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=98.78 E-value=1.7e-08 Score=77.29 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=62.8
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
++|+|.++++.. .++..||+++.. +|..|++|||++|+|+|+.+.........+..+...|....+.. +.+
T Consensus 281 ~~v~~~~~~~~~---~ll~~ad~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~ 354 (402)
T 3ia7_A 281 PNVEAHQWIPFH---SVLAHARACLTH---GTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPA 354 (402)
T ss_dssp TTEEEESCCCHH---HHHTTEEEEEEC---CCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHH
T ss_pred CcEEEecCCCHH---HHHhhCCEEEEC---CCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHH
Confidence 799999999875 567889999832 34578899999999999886411223345666777787665554 788
Q ss_pred HHHHHHHHhccCC
Q psy15363 117 EYQDIAIRLGTDR 129 (130)
Q Consensus 117 ~y~~~a~~l~~d~ 129 (130)
++.+...+|++|+
T Consensus 355 ~l~~~~~~ll~~~ 367 (402)
T 3ia7_A 355 SIREAVERLAADS 367 (402)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCH
Confidence 8988888888875
No 40
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=98.69 E-value=1.6e-07 Score=72.49 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=78.1
Q ss_pred HHHhhCC---CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhc
Q psy15363 5 FVLKAVP---NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWT 81 (130)
Q Consensus 5 ~il~~~P---~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~ 81 (130)
+.+++.| +..++.+++ ....+.+++..++.+. ++.+.+++ +++..+|+.||+++.. +|++|+.|++++
T Consensus 201 ~al~~l~~~~~~~vi~~~G-~~~~~~~~~~~~~~~~---~~~v~~f~--~dm~~~l~~aDlvI~r---aG~~Tv~E~~a~ 271 (365)
T 3s2u_A 201 EALAQVPLEIRPAIRHQAG-RQHAEITAERYRTVAV---EADVAPFI--SDMAAAYAWADLVICR---AGALTVSELTAA 271 (365)
T ss_dssp HHHHTSCTTTCCEEEEECC-TTTHHHHHHHHHHTTC---CCEEESCC--SCHHHHHHHCSEEEEC---CCHHHHHHHHHH
T ss_pred HHHHhcccccceEEEEecC-ccccccccceeccccc---ccccccch--hhhhhhhccceEEEec---CCcchHHHHHHh
Confidence 4444444 234444432 2345566666677664 56777888 4577789999999932 468899999999
Q ss_pred CCcEEecCCCch---hhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhccCCC
Q psy15363 82 GTPVVTLPGETL---ASRVAASQLATLGCPELIAR---THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 82 G~PvV~~~g~~~---~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~~d~e 130 (130)
|+|+|..+-... .+..-+..+...|...++.+ +.+++.+...+|++||+
T Consensus 272 G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~ 326 (365)
T 3s2u_A 272 GLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPE 326 (365)
T ss_dssp TCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTH
T ss_pred CCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHH
Confidence 999987753321 23344667777787666653 57889999999999874
No 41
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=98.68 E-value=8.5e-08 Score=74.08 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=61.6
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
++|+|.++++.. .++..||+++.. +|..|++||+++|+|+|+.+-. ......+..+...|....+.. +.+
T Consensus 297 ~~v~~~~~~~~~---~ll~~ad~~v~~---~G~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~l~~~g~g~~~~~~~~~~~ 369 (415)
T 3rsc_A 297 PNVEAHRWVPHV---KVLEQATVCVTH---GGMGTLMEALYWGRPLVVVPQS-FDVQPMARRVDQLGLGAVLPGEKADGD 369 (415)
T ss_dssp TTEEEESCCCHH---HHHHHEEEEEES---CCHHHHHHHHHTTCCEEECCCS-GGGHHHHHHHHHHTCEEECCGGGCCHH
T ss_pred CcEEEEecCCHH---HHHhhCCEEEEC---CcHHHHHHHHHhCCCEEEeCCc-chHHHHHHHHHHcCCEEEcccCCCCHH
Confidence 789999999865 456789999832 3457899999999999998642 223334556666677665543 788
Q ss_pred HHHHHHHHhccCC
Q psy15363 117 EYQDIAIRLGTDR 129 (130)
Q Consensus 117 ~y~~~a~~l~~d~ 129 (130)
++.+...++++|+
T Consensus 370 ~l~~~i~~ll~~~ 382 (415)
T 3rsc_A 370 TLLAAVGAVAADP 382 (415)
T ss_dssp HHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCH
Confidence 8888888888875
No 42
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=98.66 E-value=8.8e-08 Score=73.39 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=67.4
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
+.+++++++ +...+.++ . +. ++|.| |+++..+ +|..||+|+.. +|++|++|||++|+|+|+.+-.
T Consensus 244 ~~~~~~~~g-~~~~~~l~----~--~~-~~v~~-~~~~~~~---~l~~~d~~v~~---~G~~t~~Ea~~~G~P~v~~p~~ 308 (384)
T 2p6p_A 244 DVELIVAAP-DTVAEALR----A--EV-PQARV-GWTPLDV---VAPTCDLLVHH---AGGVSTLTGLSAGVPQLLIPKG 308 (384)
T ss_dssp TCEEEEECC-HHHHHHHH----H--HC-TTSEE-ECCCHHH---HGGGCSEEEEC---SCTTHHHHHHHTTCCEEECCCS
T ss_pred CcEEEEEeC-CCCHHhhC----C--CC-CceEE-cCCCHHH---HHhhCCEEEeC---CcHHHHHHHHHhCCCEEEccCc
Confidence 567766553 22222222 2 33 79999 9998654 56899999953 4567999999999999999753
Q ss_pred chhhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhccCC
Q psy15363 92 TLASRVAASQLATLGCPELIAR---THKEYQDIAIRLGTDR 129 (130)
Q Consensus 92 ~~~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~~d~ 129 (130)
.. ....+..+...|..-.+.. +.+++.+...++++|+
T Consensus 309 ~d-q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 348 (384)
T 2p6p_A 309 SV-LEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKD 348 (384)
T ss_dssp HH-HHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCH
T ss_pred cc-chHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCH
Confidence 21 1233444555566544432 6788888888887775
No 43
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=98.59 E-value=4.4e-08 Score=81.97 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCCCC------EEEe-cCCCHH------HHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEEecCC
Q psy15363 25 EANIQATAQALGLDQHR------ILFS-NVAAKE------EHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~r------v~f~-g~~~~~------~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~~g 90 (130)
.+.+...++++++. ++ |+|. ++++.. ++..+|+.||+|+.|+. +++|++.+|||+||+|||+++.
T Consensus 472 ~D~Il~~~r~l~L~-N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~ 550 (725)
T 3nb0_A 472 NDLILNKIRQVQLF-NSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNV 550 (725)
T ss_dssp GCHHHHHHHHHTCC-CCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETT
T ss_pred ccHHHHHHHhcCCC-CCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCC
Confidence 34677778888886 55 5665 556654 58889999999999885 5689999999999999999875
Q ss_pred Cc
Q psy15363 91 ET 92 (130)
Q Consensus 91 ~~ 92 (130)
..
T Consensus 551 gG 552 (725)
T 3nb0_A 551 SG 552 (725)
T ss_dssp BH
T ss_pred CC
Confidence 53
No 44
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.53 E-value=2.4e-07 Score=72.57 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=61.0
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
++|++.++++..+ +|..||+++. .+|.+|++|||++|+|+|+.+-... ....+..+...|..-.+.. +.+
T Consensus 319 ~~v~~~~~~~~~~---ll~~ad~~V~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~ 391 (441)
T 2yjn_A 319 DNVRTVGFVPMHA---LLPTCAATVH---HGGPGSWHTAAIHGVPQVILPDGWD-TGVRAQRTQEFGAGIALPVPELTPD 391 (441)
T ss_dssp SSEEECCSCCHHH---HGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHHTSEEECCTTTCCHH
T ss_pred CCEEEecCCCHHH---HHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCccc-HHHHHHHHHHcCCEEEcccccCCHH
Confidence 7999999998754 4789999994 3566899999999999999976322 2233455556676555542 678
Q ss_pred HHHHHHHHhccCC
Q psy15363 117 EYQDIAIRLGTDR 129 (130)
Q Consensus 117 ~y~~~a~~l~~d~ 129 (130)
++.+...++++|+
T Consensus 392 ~l~~~i~~ll~~~ 404 (441)
T 2yjn_A 392 QLRESVKRVLDDP 404 (441)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCH
Confidence 8888888887765
No 45
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=98.45 E-value=7.1e-07 Score=69.31 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=61.1
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
++|.+.++++.. .+|..||+|+. .+|.+|++||+++|+|+|+.+-... ....+..+...|..-.+.. +.+
T Consensus 305 ~~v~~~~~~~~~---~~l~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~ 377 (424)
T 2iya_A 305 PNVEVHQWVPQL---DILTKASAFIT---HAGMGSTMEALSNAVPMVAVPQIAE-QTMNAERIVELGLGRHIPRDQVTAE 377 (424)
T ss_dssp TTEEEESSCCHH---HHHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHTTSEEECCGGGCCHH
T ss_pred CCeEEecCCCHH---HHHhhCCEEEE---CCchhHHHHHHHcCCCEEEecCccc-hHHHHHHHHHCCCEEEcCcCCCCHH
Confidence 789999999865 46789999984 3456899999999999999976422 2334555666676544442 778
Q ss_pred HHHHHHHHhccCC
Q psy15363 117 EYQDIAIRLGTDR 129 (130)
Q Consensus 117 ~y~~~a~~l~~d~ 129 (130)
++.+...++++|+
T Consensus 378 ~l~~~i~~ll~~~ 390 (424)
T 2iya_A 378 KLREAVLAVASDP 390 (424)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCH
Confidence 8888888887765
No 46
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=98.44 E-value=1.1e-07 Score=73.33 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=45.7
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
+.++++++++ ...+.++ ++. ++|+|.|+++..++ +..||+|+. .+|++|++|||++|+|+|+.+-
T Consensus 263 ~~~~v~~~g~-~~~~~l~------~~~-~~v~~~~~~~~~~l---l~~ad~~v~---~~G~~t~~Eal~~G~P~v~~p~ 327 (398)
T 3oti_A 263 DADFVLALGD-LDISPLG------TLP-RNVRAVGWTPLHTL---LRTCTAVVH---HGGGGTVMTAIDAGIPQLLAPD 327 (398)
T ss_dssp SSEEEEECTT-SCCGGGC------SCC-TTEEEESSCCHHHH---HTTCSEEEE---CCCHHHHHHHHHHTCCEEECCC
T ss_pred CCEEEEEECC-cChhhhc------cCC-CcEEEEccCCHHHH---HhhCCEEEE---CCCHHHHHHHHHhCCCEEEcCC
Confidence 4666666642 3222221 343 89999999986654 567999992 3566899999999999999753
No 47
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.32 E-value=2.1e-06 Score=66.66 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=58.0
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
++|.+.+++|..++ +..||+|+. .+|.+|++||+++|+|+|+.+-..- ....+..+...|..-.+.. +.+
T Consensus 285 ~~v~~~~~~~~~~~---l~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~ 357 (415)
T 1iir_A 285 ADCFAIGEVNHQVL---FGRVAAVIH---HGGAGTTHVAARAGAPQILLPQMAD-QPYYAGRVAELGVGVAHDGPIPTFD 357 (415)
T ss_dssp GGEEECSSCCHHHH---GGGSSEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEEECSSSSCCHH
T ss_pred CCEEEeCcCChHHH---HhhCCEEEe---CCChhHHHHHHHcCCCEEECCCCCc-cHHHHHHHHHCCCcccCCcCCCCHH
Confidence 57899999987554 689999994 3456799999999999999875321 2233445556666544432 677
Q ss_pred HHHHHHHHhccCC
Q psy15363 117 EYQDIAIRLGTDR 129 (130)
Q Consensus 117 ~y~~~a~~l~~d~ 129 (130)
++.+...++ +|+
T Consensus 358 ~l~~~i~~l-~~~ 369 (415)
T 1iir_A 358 SLSAALATA-LTP 369 (415)
T ss_dssp HHHHHHHHH-TSH
T ss_pred HHHHHHHHH-cCH
Confidence 787777777 654
No 48
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.20 E-value=4.2e-06 Score=64.92 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=57.7
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCcee---cCHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIA---RTHK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va---~~~~ 116 (130)
+++.+.+++|..+ ++..||+|+. .+|.+|++||+++|+|+|+.+-... ...-+..+...|..-.+. .+.+
T Consensus 286 ~~v~~~~~~~~~~---ll~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~ 358 (416)
T 1rrv_A 286 DDCFAIDEVNFQA---LFRRVAAVIH---HGSAGTEHVATRAGVPQLVIPRNTD-QPYFAGRVAALGIGVAHDGPTPTFE 358 (416)
T ss_dssp TTEEEESSCCHHH---HGGGSSEEEE---CCCHHHHHHHHHHTCCEEECCCSBT-HHHHHHHHHHHTSEEECSSSCCCHH
T ss_pred CCEEEeccCChHH---HhccCCEEEe---cCChhHHHHHHHcCCCEEEccCCCC-cHHHHHHHHHCCCccCCCCCCCCHH
Confidence 5789999998654 4689999994 4566799999999999999875322 223344555556654443 2677
Q ss_pred HHHHHHHHhccCC
Q psy15363 117 EYQDIAIRLGTDR 129 (130)
Q Consensus 117 ~y~~~a~~l~~d~ 129 (130)
++.+...++ +|+
T Consensus 359 ~l~~~i~~l-~~~ 370 (416)
T 1rrv_A 359 SLSAALTTV-LAP 370 (416)
T ss_dssp HHHHHHHHH-TSH
T ss_pred HHHHHHHHh-hCH
Confidence 777777777 654
No 49
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.91 E-value=0.00011 Score=55.24 Aligned_cols=85 Identities=12% Similarity=-0.043 Sum_probs=58.3
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCch
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~ 93 (130)
..++.|.+.+..+.+++..++. .++.+.+++ +++..+|+.||+.+. .+|+|+.|++++|+|.|..+-...
T Consensus 186 i~vv~G~~~~~~~~l~~~~~~~----~~v~v~~~~--~~m~~~m~~aDlvI~----~gG~T~~E~~~~g~P~i~ip~~~~ 255 (282)
T 3hbm_A 186 ISIATSSSNPNLKKLQKFAKLH----NNIRLFIDH--ENIAKLMNESNKLII----SASSLVNEALLLKANFKAICYVKN 255 (282)
T ss_dssp EEEEECTTCTTHHHHHHHHHTC----SSEEEEESC--SCHHHHHHTEEEEEE----ESSHHHHHHHHTTCCEEEECCSGG
T ss_pred EEEEECCCchHHHHHHHHHhhC----CCEEEEeCH--HHHHHHHHHCCEEEE----CCcHHHHHHHHcCCCEEEEeCCCC
Confidence 3445564334456677665542 478888888 457778899999995 356899999999999998764333
Q ss_pred hhhhHHHHHHhcCCCC
Q psy15363 94 ASRVAASQLATLGCPE 109 (130)
Q Consensus 94 ~~r~~~~~l~~~g~~~ 109 (130)
.+.-+..+...|...
T Consensus 256 -Q~~nA~~l~~~G~~~ 270 (282)
T 3hbm_A 256 -QESTATWLAKKGYEV 270 (282)
T ss_dssp -GHHHHHHHHHTTCEE
T ss_pred -HHHHHHHHHHCCCEE
Confidence 234556666666643
No 50
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=97.90 E-value=1.2e-05 Score=61.54 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=43.7
Q ss_pred CCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCC
Q psy15363 39 QHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCP 108 (130)
Q Consensus 39 ~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~ 108 (130)
++++.+.+++|..++ +..+|+|+. .+|.+|++||+++|+|+|+.+-..- ....+..+...|..
T Consensus 287 ~~~v~~~~~~p~~~l---L~~~~~~v~---h~G~~s~~Eal~~GvP~v~~P~~~d-Q~~na~~v~~~G~g 349 (400)
T 4amg_A 287 PANVRVVEWIPLGAL---LETCDAIIH---HGGSGTLLTALAAGVPQCVIPHGSY-QDTNRDVLTGLGIG 349 (400)
T ss_dssp CTTEEEECCCCHHHH---HTTCSEEEE---CCCHHHHHHHHHHTCCEEECCC----CHHHHHHHHHHTSE
T ss_pred CCCEEEEeecCHHHH---hhhhhheec---cCCccHHHHHHHhCCCEEEecCccc-HHHHHHHHHHCCCE
Confidence 378999999997654 568999882 4567899999999999999864221 12223444455654
No 51
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=97.81 E-value=5.4e-05 Score=58.70 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=55.1
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec---CHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIAR---THK 116 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~ 116 (130)
++|++.+++|..+ ++..||+++. .+|..|+.||+++|+|+|..+-..- ....+..+...|....+.. +.+
T Consensus 268 ~~v~~~~~~~~~~---ll~~~d~~v~---~gG~~t~~Eal~~GvP~v~~p~~~d-Q~~na~~~~~~G~g~~l~~~~~~~~ 340 (404)
T 3h4t_A 268 DDCLVVGEVNHQV---LFGRVAAVVH---HGGAGTTTAVTRAGAPQVVVPQKAD-QPYYAGRVADLGVGVAHDGPTPTVE 340 (404)
T ss_dssp TTEEEESSCCHHH---HGGGSSEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEEECSSSSCCHH
T ss_pred CCEEEecCCCHHH---HHhhCcEEEE---CCcHHHHHHHHHcCCCEEEcCCccc-HHHHHHHHHHCCCEeccCcCCCCHH
Confidence 6899999998755 4568999982 3345799999999999999864221 2233445556676544432 667
Q ss_pred HHHHHHHHhcc
Q psy15363 117 EYQDIAIRLGT 127 (130)
Q Consensus 117 ~y~~~a~~l~~ 127 (130)
++.+...++++
T Consensus 341 ~l~~ai~~ll~ 351 (404)
T 3h4t_A 341 SLSAALATALT 351 (404)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhC
Confidence 77766666654
No 52
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.37 E-value=0.00013 Score=54.98 Aligned_cols=86 Identities=12% Similarity=-0.021 Sum_probs=55.7
Q ss_pred HHHHHhhCC--CcEEEEeecCcccHHHHHHHHHHcC--CCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHH
Q psy15363 3 DIFVLKAVP--NSILWLLKFPAVGEANIQATAQALG--LDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDV 78 (130)
Q Consensus 3 w~~il~~~P--~a~l~i~g~~~~~~~~l~~~~~~~g--~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEA 78 (130)
|.++.+... +.++++.|. +.+++..++..+..+ ....-+.+.|..+..++.++++.||+++.. . +|..-+ |
T Consensus 202 ~~~l~~~L~~~~~~vvl~g~-~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~--D-sg~~Hl-A 276 (348)
T 1psw_A 202 YAELAKQLIDEGYQVVLFGS-AKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTN--D-SGLMHV-A 276 (348)
T ss_dssp HHHHHHHHHHTTCEEEECCC-GGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEE--S-SHHHHH-H
T ss_pred HHHHHHHHHHCCCeEEEEeC-hhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHhCCEEEec--C-CHHHHH-H
Confidence 455543321 678888885 345554444443322 111234678888999999999999999842 2 344445 8
Q ss_pred HhcCCcEEecCCCch
Q psy15363 79 LWTGTPVVTLPGETL 93 (130)
Q Consensus 79 la~G~PvV~~~g~~~ 93 (130)
.++|+|+|+.-|...
T Consensus 277 aa~g~P~v~lfg~t~ 291 (348)
T 1psw_A 277 AALNRPLVALYGPSS 291 (348)
T ss_dssp HHTTCCEEEEESSSC
T ss_pred HHcCCCEEEEECCCC
Confidence 899999999866543
No 53
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.30 E-value=0.0009 Score=53.23 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=53.7
Q ss_pred CCEEEecCCCHHHHHHhhcc--ccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHH-HhcCCCCcee--cC
Q psy15363 40 HRILFSNVAAKEEHVRRGQL--ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQL-ATLGCPELIA--RT 114 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~--~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l-~~~g~~~~va--~~ 114 (130)
+|+.+.+++|..+ ++.. +|+|+ ..+|.+|++||+++|+|+|+.+-..- ...-+..+ ...|..-.+. -+
T Consensus 353 ~~~~v~~~~pq~~---~L~h~~~~~~v---th~G~~s~~Eal~~GvP~i~~P~~~d-Q~~na~~~~~~~G~g~~l~~~~~ 425 (482)
T 2pq6_A 353 DRGLIASWCPQDK---VLNHPSIGGFL---THCGWNSTTESICAGVPMLCWPFFAD-QPTDCRFICNEWEIGMEIDTNVK 425 (482)
T ss_dssp TTEEEESCCCHHH---HHTSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTSCCEEECCSSCC
T ss_pred CCEEEEeecCHHH---HhcCCCCCEEE---ecCCcchHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCEEEEECCCCC
Confidence 5777788887654 4544 45576 24677899999999999999975322 23344445 3567765443 25
Q ss_pred HHHHHHHHHHhccCC
Q psy15363 115 HKEYQDIAIRLGTDR 129 (130)
Q Consensus 115 ~~~y~~~a~~l~~d~ 129 (130)
.++..+...++.+|+
T Consensus 426 ~~~l~~~i~~ll~~~ 440 (482)
T 2pq6_A 426 REELAKLINEVIAGD 440 (482)
T ss_dssp HHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHcCC
Confidence 566666666666554
No 54
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.29 E-value=0.00058 Score=52.34 Aligned_cols=79 Identities=9% Similarity=0.026 Sum_probs=56.7
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
+.++++.|+ +.+++..++..+..+ ..-+.+.|..+-.++.++++.||+++.. . .|.+-+ |.++|+|+|++-|.
T Consensus 217 g~~vvl~g~-~~e~~~~~~i~~~~~--~~~~~l~g~~sl~e~~ali~~a~~~i~~--D-sG~~Hl-Aaa~g~P~v~lfg~ 289 (349)
T 3tov_A 217 GYKTVFFGG-PMDLEMVQPVVEQME--TKPIVATGKFQLGPLAAAMNRCNLLITN--D-SGPMHV-GISQGVPIVALYGP 289 (349)
T ss_dssp TCEEEECCC-TTTHHHHHHHHHTCS--SCCEECTTCCCHHHHHHHHHTCSEEEEE--S-SHHHHH-HHTTTCCEEEECSS
T ss_pred CCeEEEEeC-cchHHHHHHHHHhcc--cccEEeeCCCCHHHHHHHHHhCCEEEEC--C-CCHHHH-HHhcCCCEEEEECC
Confidence 567778885 355666666666544 2457788999989999999999999831 2 455555 88999999999776
Q ss_pred chhhhh
Q psy15363 92 TLASRV 97 (130)
Q Consensus 92 ~~~~r~ 97 (130)
....++
T Consensus 290 t~p~~~ 295 (349)
T 3tov_A 290 SNPFFY 295 (349)
T ss_dssp CCHHHH
T ss_pred CCcccc
Confidence 544443
No 55
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.23 E-value=0.00087 Score=53.16 Aligned_cols=82 Identities=11% Similarity=0.009 Sum_probs=54.7
Q ss_pred CCEEEecCCCHHHHHHhhc--cccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHhc-CCCCcee---c
Q psy15363 40 HRILFSNVAAKEEHVRRGQ--LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATL-GCPELIA---R 113 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~--~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~-g~~~~va---~ 113 (130)
+|+.+.+++|..+ ++. .+|+|+. .+|.+|++||+++|+|+|+.+-..- ...-+..+... |..-.+. -
T Consensus 325 ~~~~v~~w~pq~~---vL~h~~~~~fvt---h~G~~S~~Eal~~GvP~i~~P~~~d-Q~~Na~~l~~~~g~g~~l~~~~~ 397 (456)
T 2c1x_A 325 GYGMVVPWAPQAE---VLAHEAVGAFVT---HCGWNSLWESVAGGVPLICRPFFGD-QRLNGRMVEDVLEIGVRIEGGVF 397 (456)
T ss_dssp TTEEEESCCCHHH---HHTSTTEEEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTSCCEEECGGGSC
T ss_pred CceEEecCCCHHH---HhcCCcCCEEEe---cCCcchHHHHHHhCceEEecCChhh-HHHHHHHHHHHhCeEEEecCCCc
Confidence 4688888888654 355 7889882 4677899999999999999975322 23345556555 7664443 1
Q ss_pred CHHHHHHHHHHhccC
Q psy15363 114 THKEYQDIAIRLGTD 128 (130)
Q Consensus 114 ~~~~y~~~a~~l~~d 128 (130)
+.++..+...++.+|
T Consensus 398 ~~~~l~~~i~~ll~~ 412 (456)
T 2c1x_A 398 TKSGLMSCFDQILSQ 412 (456)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCC
Confidence 456666665555554
No 56
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.21 E-value=0.0023 Score=50.75 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=54.7
Q ss_pred CCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHH-HHhcCCCCcee------
Q psy15363 40 HRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQ-LATLGCPELIA------ 112 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~-l~~~g~~~~va------ 112 (130)
+|+...+++|..+++. ...+|+|+. .+|.+|++||+++|+|+|+.+-..-. ..-+.. +...|..-.+.
T Consensus 332 ~~~~v~~w~pq~~vL~-h~~~~~fvt---h~G~~s~~Eal~~GvP~i~~P~~~dQ-~~Na~~lv~~~g~g~~l~~~~~~~ 406 (463)
T 2acv_A 332 GKGMICGWAPQVEVLA-HKAIGGFVS---HCGWNSILESMWFGVPILTWPIYAEQ-QLNAFRLVKEWGVGLGLRVDYRKG 406 (463)
T ss_dssp CSEEEESSCCHHHHHH-STTEEEEEE---CCCHHHHHHHHHTTCCEEECCCSTTH-HHHHHHHHHTSCCEEESCSSCCTT
T ss_pred CCEEEEccCCHHHHhC-CCccCeEEe---cCCchhHHHHHHcCCCeeeccchhhh-HHHHHHHHHHcCeEEEEecccCCC
Confidence 4667777777654321 136888882 45778999999999999999763332 333444 46777765551
Q ss_pred ---cCHHHHHHHHHHhcc
Q psy15363 113 ---RTHKEYQDIAIRLGT 127 (130)
Q Consensus 113 ---~~~~~y~~~a~~l~~ 127 (130)
-+.++..+...++.+
T Consensus 407 ~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 407 SDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp CCCCCHHHHHHHHHHHTC
T ss_pred CccccHHHHHHHHHHHHh
Confidence 256677777767665
No 57
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=97.12 E-value=0.0013 Score=49.20 Aligned_cols=115 Identities=10% Similarity=-0.027 Sum_probs=70.8
Q ss_pred hHHHHHhhC--CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH
Q psy15363 2 SDIFVLKAV--PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL 79 (130)
Q Consensus 2 ~w~~il~~~--P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl 79 (130)
-|+++.+.. .+.++++.++++.+++..++..+. . ..+.+.|..+-.|+.++++.||+++. .. .|.+-+ |.
T Consensus 198 ~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~--~--~~~~l~g~~sl~el~ali~~a~l~I~--~D-SG~~Hl-Aa 269 (326)
T 2gt1_A 198 HWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEG--F--AYVEVLPKMSLEGVARVLAGAKFVVS--VD-TGLSHL-TA 269 (326)
T ss_dssp HHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTT--C--TTEEECCCCCHHHHHHHHHTCSEEEE--ES-SHHHHH-HH
T ss_pred HHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhh--C--CcccccCCCCHHHHHHHHHhCCEEEe--cC-CcHHHH-HH
Confidence 366776665 367777764222333444444332 2 24678899999999999999999982 12 345555 66
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCC--------Cce-ecCHHHHHHHHHHhccCC
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCP--------ELI-ARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~--------~~v-a~~~~~y~~~a~~l~~d~ 129 (130)
++|+|+|+.-|.....+++- .+-. .-+ .=++++-.+.+.+++++.
T Consensus 270 a~g~P~v~lfg~t~p~~~~P-----~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~~ 323 (326)
T 2gt1_A 270 ALDRPNITVYGPTDPGLIGG-----YGKNQMVCRAPGNELSQLTANAVKQFIEENAEKA 323 (326)
T ss_dssp HTTCCEEEEESSSCHHHHCC-----CSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTTC
T ss_pred HcCCCEEEEECCCChhhcCC-----CCCCceEecCCcccccCCCHHHHHHHHHHHHHHh
Confidence 79999999976554444320 1111 111 126788888887777653
No 58
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=96.93 E-value=0.0049 Score=49.12 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=51.8
Q ss_pred CCEEEecCCCHHHHHHhhcccc--EEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHHHh-cCCCCceec---
Q psy15363 40 HRILFSNVAAKEEHVRRGQLAD--VCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLAT-LGCPELIAR--- 113 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~~~D--v~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~-~g~~~~va~--- 113 (130)
+|+.+.+++|..+ ++..++ +|+ ..+|.++++||+++|+|.|+.+--.- ...-+..+.. .|..-.+..
T Consensus 327 ~~~~vv~w~Pq~~---vL~h~~v~~fv---tH~G~~S~~Eal~~GvP~i~~P~~~D-Q~~Na~~v~~~~g~Gv~l~~~~~ 399 (454)
T 3hbf_A 327 TKGKIVAWAPQVE---ILKHSSVGVFL---THSGWNSVLECIVGGVPMISRPFFGD-QGLNTILTESVLEIGVGVDNGVL 399 (454)
T ss_dssp TTEEEESSCCHHH---HHHSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTSCSEEECGGGSC
T ss_pred CceEEEeeCCHHH---HHhhcCcCeEE---ecCCcchHHHHHHcCCCEecCccccc-HHHHHHHHHHhhCeeEEecCCCC
Confidence 5788889998754 455777 666 24567899999999999999975321 2233445544 466543332
Q ss_pred CHHHHHHHHHHhccC
Q psy15363 114 THKEYQDIAIRLGTD 128 (130)
Q Consensus 114 ~~~~y~~~a~~l~~d 128 (130)
+.++..+...++.+|
T Consensus 400 ~~~~l~~av~~ll~~ 414 (454)
T 3hbf_A 400 TKESIKKALELTMSS 414 (454)
T ss_dssp CHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHCC
Confidence 445555555555544
No 59
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.36 E-value=0.0023 Score=46.60 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=49.9
Q ss_pred CEEEecCCCHHHHHHhhc-cccEEEcCCCCCCchHHHHHHhcCCcEEecCCCch---hhhhHHHHHHhcCCCCceecCHH
Q psy15363 41 RILFSNVAAKEEHVRRGQ-LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL---ASRVAASQLATLGCPELIARTHK 116 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~-~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~---~~r~~~~~l~~~g~~~~va~~~~ 116 (130)
++...++. +++..+|. .||+++. .+|..|++|++++|+|.|..+.... .....+..+...|..-.+ +.+
T Consensus 115 ~v~v~~f~--~~m~~~l~~~AdlvIs---haGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~--~~~ 187 (224)
T 2jzc_A 115 KVIGFDFS--TKMQSIIRDYSDLVIS---HAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC--APT 187 (224)
T ss_dssp EEEECCSS--SSHHHHHHHHCSCEEE---SSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE--CSC
T ss_pred eEEEeecc--chHHHHHHhcCCEEEE---CCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc--CHH
Confidence 45555666 45777889 9999982 3677899999999999998876432 122335556566764333 444
Q ss_pred HHHHHHHH
Q psy15363 117 EYQDIAIR 124 (130)
Q Consensus 117 ~y~~~a~~ 124 (130)
++.+...+
T Consensus 188 ~L~~~i~~ 195 (224)
T 2jzc_A 188 ETGLIAGL 195 (224)
T ss_dssp TTTHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 60
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=96.21 E-value=0.025 Score=45.01 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=47.4
Q ss_pred EEecCCCHHHHHHhhcccc--EEEcCCCCCCchHHHHHHhcCCcEEecCCCchhhhhHHHHH-HhcCCCCcee------c
Q psy15363 43 LFSNVAAKEEHVRRGQLAD--VCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQL-ATLGCPELIA------R 113 (130)
Q Consensus 43 ~f~g~~~~~~~~~~~~~~D--v~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~~~r~~~~~l-~~~g~~~~va------~ 113 (130)
++.+++|..+ ++..++ +|+ ..+|-+|++||+++|+|+|+.+--.- ...-+..+ ...|..-.+. -
T Consensus 342 ~v~~w~Pq~~---vL~h~~v~~fv---tHgG~~S~~Eal~~GvP~i~~P~~~D-Q~~na~~l~~~~G~g~~l~~~~~~~~ 414 (480)
T 2vch_A 342 VIPFWAPQAQ---VLAHPSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAE-QKMNAVLLSEDIRAALRPRAGDDGLV 414 (480)
T ss_dssp EEESCCCHHH---HHHSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTTCCEECCCCCTTSCC
T ss_pred EEeCccCHHH---HhCCCCcCeEE---ecccchhHHHHHHcCCCEEecccccc-chHHHHHHHHHhCeEEEeecccCCcc
Confidence 3445787654 455667 455 24567899999999999999975322 22334443 5666654332 2
Q ss_pred CHHHHHHHHHHhcc
Q psy15363 114 THKEYQDIAIRLGT 127 (130)
Q Consensus 114 ~~~~y~~~a~~l~~ 127 (130)
+.++..+...++.+
T Consensus 415 ~~~~l~~av~~vl~ 428 (480)
T 2vch_A 415 RREEVARVVKGLME 428 (480)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 45555555555554
No 61
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=94.29 E-value=0.45 Score=40.56 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=55.5
Q ss_pred CcEEEEeecCccc-H--HHHHHHHHHc--------CCCCC--CEEEecCCCHHHHHHhhccccEEEcCCC--C-CCchHH
Q psy15363 12 NSILWLLKFPAVG-E--ANIQATAQAL--------GLDQH--RILFSNVAAKEEHVRRGQLADVCLDTPL--C-NGHTTS 75 (130)
Q Consensus 12 ~a~l~i~g~~~~~-~--~~l~~~~~~~--------g~~~~--rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--~-~~g~~~ 75 (130)
...+++.|...|. . ..+.+++.+. .+. + +|.|+..-+..--..++..||+++.++. + .+|++-
T Consensus 555 p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~-~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~ 633 (796)
T 2c4m_A 555 ARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVS-PLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSN 633 (796)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTT-TTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHH
T ss_pred CeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccC-CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHH
Confidence 3777788764332 1 2233333322 354 7 8999988876656678899999999874 4 589999
Q ss_pred HHHHhcCCcEEec-CCC
Q psy15363 76 MDVLWTGTPVVTL-PGE 91 (130)
Q Consensus 76 lEAla~G~PvV~~-~g~ 91 (130)
+=||.-|.+.|.. +|.
T Consensus 634 MKam~NGaL~iGtLDGa 650 (796)
T 2c4m_A 634 MKFMMNGALTLGTMDGA 650 (796)
T ss_dssp HHHHHTTCEEEEESSTH
T ss_pred HHHHHcCCeEEeccCCe
Confidence 9999999998865 443
No 62
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=94.15 E-value=0.49 Score=40.32 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=55.3
Q ss_pred cEEEEeecCccc-H--HHHHHHHHHc--------CCCCC--CEEEecCCCHHHHHHhhccccEEEcCCC--C-CCchHHH
Q psy15363 13 SILWLLKFPAVG-E--ANIQATAQAL--------GLDQH--RILFSNVAAKEEHVRRGQLADVCLDTPL--C-NGHTTSM 76 (130)
Q Consensus 13 a~l~i~g~~~~~-~--~~l~~~~~~~--------g~~~~--rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--~-~~g~~~l 76 (130)
..+++.|...|. . ..+.+++.+. .+. + +|.|+..-+..--..++..||+++.++. + .+|++-+
T Consensus 566 ~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~-~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~M 644 (796)
T 1l5w_A 566 RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVG-DKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNM 644 (796)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTG-GGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHH
T ss_pred eEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccC-CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHH
Confidence 777777764332 1 2233333322 343 7 8999988876655678899999999874 4 5899999
Q ss_pred HHHhcCCcEEec-CCC
Q psy15363 77 DVLWTGTPVVTL-PGE 91 (130)
Q Consensus 77 EAla~G~PvV~~-~g~ 91 (130)
=||.-|.+.|.. +|.
T Consensus 645 Kam~NGaL~iGtLDGa 660 (796)
T 1l5w_A 645 KLALNGALTVGTLDGA 660 (796)
T ss_dssp HHHHTTCEEEECSCTT
T ss_pred HHHHcCCeeecCcCCe
Confidence 999999998865 454
No 63
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=93.98 E-value=0.25 Score=37.14 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=55.1
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTG 82 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G 82 (130)
...+++.|+++|+-+.+ ...++.+++++++|+. ++ +-+.+++++- ...|+++-+.| ....-.+.+|+..|
T Consensus 40 ~~~~~~~~~~~lvav~d--~~~~~a~~~a~~~g~~--~~----y~d~~ell~~-~~iDaV~I~tP~~~H~~~~~~al~aG 110 (350)
T 4had_A 40 VPAIQDAENCVVTAIAS--RDLTRAREMADRFSVP--HA----FGSYEEMLAS-DVIDAVYIPLPTSQHIEWSIKAADAG 110 (350)
T ss_dssp HHHHHHCSSEEEEEEEC--SSHHHHHHHHHHHTCS--EE----ESSHHHHHHC-SSCSEEEECSCGGGHHHHHHHHHHTT
T ss_pred HHHHHhCCCeEEEEEEC--CCHHHHHHHHHHcCCC--ee----eCCHHHHhcC-CCCCEEEEeCCCchhHHHHHHHHhcC
Confidence 45678899999988885 4567788899999984 32 2345665431 34788854444 44566789999999
Q ss_pred CcEEecC
Q psy15363 83 TPVVTLP 89 (130)
Q Consensus 83 ~PvV~~~ 89 (130)
++|++-+
T Consensus 111 khVl~EK 117 (350)
T 4had_A 111 KHVVCEK 117 (350)
T ss_dssp CEEEECS
T ss_pred CEEEEeC
Confidence 9999864
No 64
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=93.07 E-value=0.78 Score=39.24 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=54.6
Q ss_pred CcEEEEeecCccc-HH--H----HHHHHHHc----CCCCC--CEEEecCCCHHHHHHhhccccEEEcCCC--C-CCchHH
Q psy15363 12 NSILWLLKFPAVG-EA--N----IQATAQAL----GLDQH--RILFSNVAAKEEHVRRGQLADVCLDTPL--C-NGHTTS 75 (130)
Q Consensus 12 ~a~l~i~g~~~~~-~~--~----l~~~~~~~----g~~~~--rv~f~g~~~~~~~~~~~~~~Dv~l~~~~--~-~~g~~~ 75 (130)
+..+++.|+..|. .. . +.+.++.. .+. + +|.|+..-+..--..++..||+++.++. + .+|++-
T Consensus 589 p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~-~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~ 667 (824)
T 2gj4_A 589 PRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVG-DRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGN 667 (824)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTG-GGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHH
T ss_pred CEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccC-CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHH
Confidence 4678888864432 21 2 23333322 133 6 8999988876656678899999999874 4 589999
Q ss_pred HHHHhcCCcEEe-cCCCc
Q psy15363 76 MDVLWTGTPVVT-LPGET 92 (130)
Q Consensus 76 lEAla~G~PvV~-~~g~~ 92 (130)
+=||.-|++.|+ ++|.+
T Consensus 668 MKamlNGaLtigtlDGan 685 (824)
T 2gj4_A 668 MKFMLNGALTIGTMDGAN 685 (824)
T ss_dssp HHHHHTTCEEEECSCTTH
T ss_pred HHHHHcCceEEEEecCcc
Confidence 999999977665 46654
No 65
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=92.92 E-value=0.86 Score=33.59 Aligned_cols=75 Identities=8% Similarity=-0.103 Sum_probs=53.5
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
+.+.+.+.|+..++-+.+ ...+..++.++++|+. . ..+.+++.. .+|+++-..|. ...-.+.+|+..
T Consensus 22 ~~~~l~~~~~~~l~av~d--~~~~~~~~~a~~~~~~--~-----~~~~~~ll~---~~D~V~i~tp~~~h~~~~~~al~~ 89 (308)
T 3uuw_A 22 YLPILTKSERFEFVGAFT--PNKVKREKICSDYRIM--P-----FDSIESLAK---KCDCIFLHSSTETHYEIIKILLNL 89 (308)
T ss_dssp THHHHTSCSSSEEEEEEC--SCHHHHHHHHHHHTCC--B-----CSCHHHHHT---TCSEEEECCCGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCeEEEEEEC--CCHHHHHHHHHHcCCC--C-----cCCHHHHHh---cCCEEEEeCCcHhHHHHHHHHHHC
Confidence 456677889999886664 3556778888888874 1 344566654 89999665554 345667899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 90 gk~vl~EK 97 (308)
T 3uuw_A 90 GVHVYVDK 97 (308)
T ss_dssp TCEEEECS
T ss_pred CCcEEEcC
Confidence 99999853
No 66
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=92.01 E-value=1.5 Score=27.74 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=49.1
Q ss_pred CcEEEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh--cCCcE
Q psy15363 12 NSILWLLKFPAV----GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPV 85 (130)
Q Consensus 12 ~a~l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla--~G~Pv 85 (130)
.-+++++++.|- ..+++++.+++.|++ -.|.-.+....++ .+..+|+++.+.+...-..-++..+ .++||
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~-~~i~~~~~~~~~~---~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv 79 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNIN-ATIEAIAETRLSE---VVDRFDVVLLAPQSRFNKKRLEEITKPKGIPI 79 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCS-EEEEEECSTTHHH---HTTTCSEEEECSCCSSHHHHHHHHHHHHTCCE
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCC-eEEEEecHHHHHh---hcCCCCEEEECCccHHHHHHHHHHhcccCCCE
Confidence 456667665443 256889999999985 3455555444333 3678999998877654444555543 58999
Q ss_pred EecCC
Q psy15363 86 VTLPG 90 (130)
Q Consensus 86 V~~~g 90 (130)
+..+.
T Consensus 80 ~~I~~ 84 (109)
T 2l2q_A 80 EIINT 84 (109)
T ss_dssp EECCH
T ss_pred EEECh
Confidence 87653
No 67
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.59 E-value=0.3 Score=34.94 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=51.8
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe-cCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~-g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
-...++++|.....++.+++.+++-|...-.=+|+ |..+... ...|..=|+.+-+-|..-...+.||...|+|||++
T Consensus 63 ~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~-~~~~~~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial 140 (202)
T 3j20_B 63 EPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPA-VKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVAL 140 (202)
T ss_dssp CSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSS-SSSCCCCSEEEESCTTTSHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHh-HHhccCCCeEEEeCCccchHHHHHHHHcCCCEEEE
Confidence 34667788876566778888888777543233344 3444332 23456777776555666678899999999999976
No 68
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=89.62 E-value=3 Score=27.22 Aligned_cols=111 Identities=11% Similarity=0.048 Sum_probs=72.6
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh-----c
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW-----T 81 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla-----~ 81 (130)
.+.+++++-+....+..+++.+++.|.. .|.... +..+-...++ .-|+. +|- .|.-.|..+++.+- .
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~--~v~~a~--~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~ 86 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFN--NTQEAD--DGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELK 86 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCC--CEEEES--SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCc--EEEEEC--CHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCC
Confidence 3578888887545678888999999973 454332 2233333333 37888 453 47778999998884 5
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
.+|||.+.+......... ....|..+++.. +.+++.+...++++
T Consensus 87 ~ipvI~lTa~~~~~~~~~--~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 87 HLPVLMITAEAKREQIIE--AAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TCCEEEEESSCCHHHHHH--HHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCHHHHHH--HHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 689998866543332221 234699887764 78888888777653
No 69
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=89.55 E-value=1 Score=33.86 Aligned_cols=77 Identities=8% Similarity=-0.118 Sum_probs=52.8
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~ 81 (130)
..+.+.+.|+..++-+.+ ...++.++.++++|+. . ..+.+++.+ -..+|+++.+.| ....-.+.+|+..
T Consensus 20 ~~~~l~~~~~~~lvav~d--~~~~~~~~~~~~~g~~-~------~~~~~~~l~-~~~~D~V~i~tp~~~h~~~~~~al~~ 89 (354)
T 3db2_A 20 MADAYTKSEKLKLVTCYS--RTEDKREKFGKRYNCA-G------DATMEALLA-REDVEMVIITVPNDKHAEVIEQCARS 89 (354)
T ss_dssp HHHHHTTCSSEEEEEEEC--SSHHHHHHHHHHHTCC-C------CSSHHHHHH-CSSCCEEEECSCTTSHHHHHHHHHHT
T ss_pred HHHHHHhCCCcEEEEEEC--CCHHHHHHHHHHcCCC-C------cCCHHHHhc-CCCCCEEEEeCChHHHHHHHHHHHHc
Confidence 456677889999887764 3456777888888874 1 234455542 145898865554 4445668899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 90 gk~vl~EK 97 (354)
T 3db2_A 90 GKHIYVEK 97 (354)
T ss_dssp TCEEEEES
T ss_pred CCEEEEcc
Confidence 99999864
No 70
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=89.47 E-value=1.9 Score=32.99 Aligned_cols=77 Identities=9% Similarity=0.007 Sum_probs=53.1
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
+.+.+.+.|+..++-+.+ ...++.++.++++|+. . .-+.++++.- ..+|+++-..|. ...-.+.+|+..
T Consensus 18 ~~~~l~~~~~~~l~av~d--~~~~~~~~~a~~~g~~----~---~~~~~ell~~-~~vD~V~i~tp~~~H~~~~~~al~a 87 (387)
T 3moi_A 18 MAPAMRHHPDAQIVAACD--PNEDVRERFGKEYGIP----V---FATLAEMMQH-VQMDAVYIASPHQFHCEHVVQASEQ 87 (387)
T ss_dssp HHHHHHHCTTEEEEEEEC--SCHHHHHHHHHHHTCC----E---ESSHHHHHHH-SCCSEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCeEEEEEEe--CCHHHHHHHHHHcCCC----e---ECCHHHHHcC-CCCCEEEEcCCcHHHHHHHHHHHHC
Confidence 456677889999887775 3456677778888873 1 2345665441 248999665553 345668899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 88 Gk~Vl~EK 95 (387)
T 3moi_A 88 GLHIIVEK 95 (387)
T ss_dssp TCEEEECS
T ss_pred CCceeeeC
Confidence 99999864
No 71
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=89.27 E-value=2.7 Score=26.21 Aligned_cols=109 Identities=10% Similarity=-0.004 Sum_probs=66.8
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEEcCCCCCCchHHHHHHhc---CCc
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCLDTPLCNGHTTSMDVLWT---GTP 84 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l~~~~~~~g~~~lEAla~---G~P 84 (130)
.++.+++++.+.......+++.+++.|. +|.... +.++....+. ..|+.+ .+...|..+++.+.. .+|
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGF---MADVTE--SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--CHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHHSTTSE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCc---EEEEeC--CHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhcCCCcc
Confidence 3456888888644456778888888775 344333 3344444443 479999 555567777766653 789
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhcc
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIAR---THKEYQDIAIRLGT 127 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~~ 127 (130)
||.+.+..-..... -....|..+++.. +.+++.....++.+
T Consensus 89 ii~ls~~~~~~~~~--~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 89 VLVSSDNPTSEEEV--HAFEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp EEEEESSCCHHHHH--HHHHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHH--HHHHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 99886543322222 1224588886653 67787777766554
No 72
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=89.21 E-value=2.8 Score=26.37 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=66.2
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cCC-CCCCchHHHHHHhc-----C
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DTP-LCNGHTTSMDVLWT-----G 82 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~~-~~~~g~~~lEAla~-----G 82 (130)
+.+++++.+.......+++.+++.|.. ..|.... +.++....+. ..|+++ |.. +...|..+++.+.. .
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~--~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIH-CQLEFVD--NGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCC-EEEEEES--SHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCC-eeEEEEC--CHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 467778876444567888888888763 2344433 3345444443 368874 543 44567778887765 6
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhc
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIAR---THKEYQDIAIRLG 126 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~ 126 (130)
+|+|.+.+..-...... ....|..+++.. +.+++.+...+++
T Consensus 82 ~pii~~s~~~~~~~~~~--~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQ--CMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp CCEEEEETTCCHHHHHH--HHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHH--HHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 89998866433222221 224588887653 5677766665543
No 73
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=89.00 E-value=2.8 Score=25.98 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=67.3
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh---ccccEEE-cC-CCCCCchHHHHHHhc-----
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG---QLADVCL-DT-PLCNGHTTSMDVLWT----- 81 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~---~~~Dv~l-~~-~~~~~g~~~lEAla~----- 81 (130)
..+++++.+....+..+++.+++.|.. .+.... +..+....+ ...|+++ |. .|...|..+++.+..
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~--~v~~~~--~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~ 80 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYE--DVLEAE--HGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFK 80 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCC--CEEEES--SHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCT
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCc--EEEEeC--CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 356778876444577888888888863 444433 223332222 2478885 54 366678888888753
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccC
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTD 128 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d 128 (130)
.+|||.+.+..-..... -....|..+++.. +.+++.+...++++.
T Consensus 81 ~~pii~~s~~~~~~~~~--~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 81 EIPIIMITAEGGKAEVI--TALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp TCCEEEEESCCSHHHHH--HHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCeEEEEeCCCChHHHH--HHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 68998876643322221 1224588887663 778888877766553
No 74
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=88.73 E-value=2.9 Score=25.82 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=65.7
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc---------cccEEE-cCC-CCCCchHHHHHHh
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ---------LADVCL-DTP-LCNGHTTSMDVLW 80 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~---------~~Dv~l-~~~-~~~~g~~~lEAla 80 (130)
+.+++++.+.......+++.+++.|.. ..|.... +.++....+. ..|+++ |.. +...|..+++.+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~-~~v~~~~--~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 78 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVP-HEVVTVR--DGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIK 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSC-CEEEEEC--SHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEC--CHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHH
Confidence 346777876444567888888888763 3455444 3355555554 478884 533 4446777777765
Q ss_pred -----cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 81 -----TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 81 -----~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
..+|+|.+.+..-...... ....|..+++.. +.+++.+...++.
T Consensus 79 ~~~~~~~~pii~ls~~~~~~~~~~--~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 79 SDPTLKRIPVVVLSTSINEDDIFH--SYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp HSTTGGGSCEEEEESCCCHHHHHH--HHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccccccEEEEecCCcHHHHHH--HHHhchhheecCCCCHHHHHHHHHHHH
Confidence 4689988765433222221 224588887653 6667666655443
No 75
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=88.61 E-value=1.1 Score=33.47 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=51.0
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~ 81 (130)
+.+.+.+.|+..++-+.+ ...+..+++++++|+. + ...+.+++..- ..+|+++...| ....-.+.+|+..
T Consensus 20 ~~~~l~~~~~~~l~av~d--~~~~~~~~~~~~~~~~--~----~~~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~~ 90 (330)
T 3e9m_A 20 FVAGLRESAQAEVRGIAS--RRLENAQKMAKELAIP--V----AYGSYEELCKD-ETIDIIYIPTYNQGHYSAAKLALSQ 90 (330)
T ss_dssp HHHHHHHSSSEEEEEEBC--SSSHHHHHHHHHTTCC--C----CBSSHHHHHHC-TTCSEEEECCCGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCcEEEEEEe--CCHHHHHHHHHHcCCC--c----eeCCHHHHhcC-CCCCEEEEcCCCHHHHHHHHHHHHC
Confidence 456677789888876664 2345677788888873 1 12334454321 26898865554 3445667899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 91 gk~vl~EK 98 (330)
T 3e9m_A 91 GKPVLLEK 98 (330)
T ss_dssp TCCEEECS
T ss_pred CCeEEEeC
Confidence 99999864
No 76
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=88.53 E-value=1.2 Score=33.42 Aligned_cols=75 Identities=20% Similarity=0.120 Sum_probs=49.7
Q ss_pred HHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEc-CCCCCCchHHHHHHhcCCc
Q psy15363 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGTP 84 (130)
Q Consensus 6 il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~-~~~~~~g~~~lEAla~G~P 84 (130)
++...|+++|+-+.+ ...++.++.++++|+. ++ +-+.+++++- ...|+++- |.+....-.+.+|+..|++
T Consensus 50 ~~~~~~~~~lvav~d--~~~~~a~~~a~~~g~~--~~----y~d~~ell~~-~~iDaV~IatP~~~H~~~a~~al~aGkh 120 (393)
T 4fb5_A 50 VFGDVERPRLVHLAE--ANAGLAEARAGEFGFE--KA----TADWRALIAD-PEVDVVSVTTPNQFHAEMAIAALEAGKH 120 (393)
T ss_dssp HHCSSCCCEEEEEEC--C--TTHHHHHHHHTCS--EE----ESCHHHHHHC-TTCCEEEECSCGGGHHHHHHHHHHTTCE
T ss_pred hhccCCCcEEEEEEC--CCHHHHHHHHHHhCCC--ee----cCCHHHHhcC-CCCcEEEECCChHHHHHHHHHHHhcCCe
Confidence 344567888888875 3445677888888874 22 2345665431 34788854 4445556779999999999
Q ss_pred EEecC
Q psy15363 85 VVTLP 89 (130)
Q Consensus 85 vV~~~ 89 (130)
|++-+
T Consensus 121 Vl~EK 125 (393)
T 4fb5_A 121 VWCEK 125 (393)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99964
No 77
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=88.27 E-value=1.4 Score=32.97 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=51.4
Q ss_pred HHHHh-hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 4 IFVLK-AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 4 ~~il~-~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
.+.+. +.|+..++-+.+ ...++.++.++++|+. .++ ..+.+++..- ..+|+++-..|. ...-.+.+|+..
T Consensus 18 ~~~l~~~~~~~~l~av~d--~~~~~~~~~~~~~g~~-~~~----~~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~~ 89 (344)
T 3mz0_A 18 INRITNKLSGAEIVAVTD--VNQEAAQKVVEQYQLN-ATV----YPNDDSLLAD-ENVDAVLVTSWGPAHESSVLKAIKA 89 (344)
T ss_dssp HHHHHHTCSSEEEEEEEC--SSHHHHHHHHHHTTCC-CEE----ESSHHHHHHC-TTCCEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHhhCCCcEEEEEEc--CCHHHHHHHHHHhCCC-Cee----eCCHHHHhcC-CCCCEEEECCCchhHHHHHHHHHHC
Confidence 44555 779999887764 3556778888888863 221 2334554431 238988655553 445668899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 90 Gk~vl~EK 97 (344)
T 3mz0_A 90 QKYVFCEK 97 (344)
T ss_dssp TCEEEECS
T ss_pred CCcEEEcC
Confidence 99999854
No 78
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=88.21 E-value=1.9 Score=32.53 Aligned_cols=81 Identities=10% Similarity=-0.052 Sum_probs=52.4
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
+.+.+.+.|+..++.+.+ ...+..+++++++|+. ..+... .+.++++.- ..+|+++...|. ...-.+.+|+..
T Consensus 21 ~~~~l~~~~~~~lv~v~d--~~~~~~~~~a~~~~~~-~~~~~~--~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~a 94 (362)
T 1ydw_A 21 VSRAIHLAPNATISGVAS--RSLEKAKAFATANNYP-ESTKIH--GSYESLLED-PEIDALYVPLPTSLHVEWAIKAAEK 94 (362)
T ss_dssp HHHHHHHCTTEEEEEEEC--SSHHHHHHHHHHTTCC-TTCEEE--SSHHHHHHC-TTCCEEEECCCGGGHHHHHHHHHTT
T ss_pred HHHHHhhCCCcEEEEEEc--CCHHHHHHHHHHhCCC-CCCeee--CCHHHHhcC-CCCCEEEEcCChHHHHHHHHHHHHC
Confidence 345567788888877775 3455677888888874 222222 233444321 148999766554 345668899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 95 Gk~V~~EK 102 (362)
T 1ydw_A 95 GKHILLEK 102 (362)
T ss_dssp TCEEEECS
T ss_pred CCeEEEec
Confidence 99999854
No 79
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=88.19 E-value=3.5 Score=26.21 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=67.7
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh-----------ccccEE-EcC-CCCCCchHHHHHH
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG-----------QLADVC-LDT-PLCNGHTTSMDVL 79 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~-----------~~~Dv~-l~~-~~~~~g~~~lEAl 79 (130)
.+++++.+.......+++.+++.|.. .+|..... ..+....+ ...|++ +|. .|...|..+++.+
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~-~~v~~~~~--~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~l 81 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVN-NEIIAFTD--GTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLV 81 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCC-CCEEEESS--HHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCc-ceEEEeCC--HHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 56778876444567888899998874 46665543 34554544 347888 454 3555688888877
Q ss_pred hc-----CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 80 WT-----GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 80 a~-----G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
.. .+|+|...+..-..... -....|..+++.. +.+++.+...++.
T Consensus 82 r~~~~~~~~pii~~t~~~~~~~~~--~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 82 KENPHTRRSPVVILTTTDDQREIQ--RCYDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp HHSTTTTTSCEEEEESCCCHHHHH--HHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HhcccccCCCEEEEecCCCHHHHH--HHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 64 68898876643322221 1234588886653 6677776665543
No 80
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=88.15 E-value=1.2 Score=30.99 Aligned_cols=68 Identities=16% Similarity=0.024 Sum_probs=46.9
Q ss_pred hhccccEEEcCCCCCCch--HHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCC-ceecCHHHHHHHHHHhccC
Q psy15363 56 RGQLADVCLDTPLCNGHT--TSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPE-LIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 56 ~~~~~Dv~l~~~~~~~g~--~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~-~va~~~~~y~~~a~~l~~d 128 (130)
+...+|.|+- .|-+.|+ .+.||+..++||+.+++.. ....++..-..+. .+++|+++.++...++.++
T Consensus 104 m~~~sda~Iv-lpGg~GTL~E~~~al~~~kpV~~l~~~~----~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 104 NALSSNVLVA-VGMGPGTAAEVALALKAKKPVVLLGTQP----EAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CGGGCSEEEE-ESCCHHHHHHHHHHHHTTCCEEEESCCH----HHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHhCCEEEE-ecCCccHHHHHHHHHHhCCcEEEEcCcc----cccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 3456787753 2323343 5889999999999998832 4555666544544 4679999999988887654
No 81
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=87.69 E-value=2.1 Score=31.83 Aligned_cols=76 Identities=12% Similarity=-0.014 Sum_probs=51.8
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
+.+.+.+.|+..++-+.+ ...+..+++++++|+. ..+.+++..- ..+|+++...|. ...-.+.+|+..
T Consensus 18 ~~~~l~~~~~~~l~av~d--~~~~~~~~~~~~~~~~--------~~~~~~~l~~-~~~D~V~i~tp~~~h~~~~~~al~~ 86 (331)
T 4hkt_A 18 HAKAVSGNADARLVAVAD--AFPAAAEAIAGAYGCE--------VRTIDAIEAA-ADIDAVVICTPTDTHADLIERFARA 86 (331)
T ss_dssp HHHHHHHCTTEEEEEEEC--SSHHHHHHHHHHTTCE--------ECCHHHHHHC-TTCCEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHhhCCCcEEEEEEC--CCHHHHHHHHHHhCCC--------cCCHHHHhcC-CCCCEEEEeCCchhHHHHHHHHHHc
Confidence 456677789999886664 3456677788887762 2344555431 268998665553 445678899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 87 gk~v~~EK 94 (331)
T 4hkt_A 87 GKAIFCEK 94 (331)
T ss_dssp TCEEEECS
T ss_pred CCcEEEec
Confidence 99999854
No 82
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=87.60 E-value=0.49 Score=33.94 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=50.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe-cCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~-g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
...+++++|.....++.+++.+++.|...-.=+|+ |.++...+ ..+..=|+.+-+-|..-...+.||...|+|||+.
T Consensus 67 ~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~-~~f~~PdlliV~Dp~~e~~ai~EA~~l~IPvIal 144 (208)
T 1vi6_A 67 EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPML-SEYREPEVVFVNDPAIDKQAVSEATAVGIPVVAL 144 (208)
T ss_dssp CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTS-TTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhh-HhhCCCCEEEEECCCcchhHHHHHHHhCCCEEEE
Confidence 44677788875556777888888777431111243 33443322 3355677776555555678999999999999987
No 83
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=87.25 E-value=5.4 Score=27.26 Aligned_cols=110 Identities=8% Similarity=0.135 Sum_probs=67.0
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc---------------cccEE-EcC-CCCCCchH
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ---------------LADVC-LDT-PLCNGHTT 74 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~---------------~~Dv~-l~~-~~~~~g~~ 74 (130)
+.+++++.+....+..+++.+++.|.. +|.... +.++....+. ..|++ +|- .|...|..
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~--~v~~a~--~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~e 136 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVS--EVEQCD--SGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYE 136 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCS--EEEEES--SHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCC--eeeeeC--CHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHH
Confidence 457888886544567888889988863 455443 3345444443 47888 454 36666887
Q ss_pred HHHHHh-------cCCcEEecCCCc-hhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 75 SMDVLW-------TGTPVVTLPGET-LASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 75 ~lEAla-------~G~PvV~~~g~~-~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
+++.+. ..+|||.+.+.. -..... . ....|..+++....+++.+...++++
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~-~-~~~~Ga~~~l~KP~~~L~~~i~~~l~ 195 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSGHDPGSEEAR-E-TIQAGMDAFLDKSLNQLANVIREIES 195 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHH-H-HHHHTCSEEEETTCTTHHHHHHHHC-
T ss_pred HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHH-H-HHhCCCCEEEcCcHHHHHHHHHHHHh
Confidence 777765 568999887653 212111 1 22358888777655566666655543
No 84
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=86.87 E-value=2 Score=32.18 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=51.8
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
..+.+.+.|+..++-+.+ ...++.+++++++|+. ++ ..+.+++..- ..+|+++-..|. ...-.+.+|+..
T Consensus 17 ~~~~l~~~~~~~l~av~d--~~~~~~~~~~~~~~~~--~~----~~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~~ 87 (344)
T 3ezy_A 17 HAENLKMIDDAILYAISD--VREDRLREMKEKLGVE--KA----YKDPHELIED-PNVDAVLVCSSTNTHSELVIACAKA 87 (344)
T ss_dssp HHHHGGGSTTEEEEEEEC--SCHHHHHHHHHHHTCS--EE----ESSHHHHHHC-TTCCEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCcEEEEEEC--CCHHHHHHHHHHhCCC--ce----eCCHHHHhcC-CCCCEEEEcCCCcchHHHHHHHHhc
Confidence 455667789999886764 3456677788888863 22 2334554331 268998665554 345567899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 88 gk~v~~EK 95 (344)
T 3ezy_A 88 KKHVFCEK 95 (344)
T ss_dssp TCEEEEES
T ss_pred CCeEEEEC
Confidence 99999864
No 85
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=86.39 E-value=3.8 Score=31.94 Aligned_cols=80 Identities=9% Similarity=-0.034 Sum_probs=49.0
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHH---HcCCCCCCEEEec-CCCHHHHHHhhc--cccEEEcCCCC-CCchHHH
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQ---ALGLDQHRILFSN-VAAKEEHVRRGQ--LADVCLDTPLC-NGHTTSM 76 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~---~~g~~~~rv~f~g-~~~~~~~~~~~~--~~Dv~l~~~~~-~~g~~~l 76 (130)
.+.+.+.|+..++-+.+ ...++.++.++ ++|+. +--.+.+ .-+.++ ++. .+|+++-+.|. ...-.+.
T Consensus 36 ~~~l~~~~~~~lvav~d--~~~~~~~~~a~~~~~~g~~-~~~~~~~~~~~~~~---ll~~~~vD~V~i~tp~~~h~~~~~ 109 (444)
T 2ixa_A 36 VENMARRDDVEIVAFAD--PDPYMVGRAQEILKKNGKK-PAKVFGNGNDDYKN---MLKDKNIDAVFVSSPWEWHHEHGV 109 (444)
T ss_dssp HHHHHTCTTEEEEEEEC--SCHHHHHHHHHHHHHTTCC-CCEEECSSTTTHHH---HTTCTTCCEEEECCCGGGHHHHHH
T ss_pred HHHHHhCCCcEEEEEEe--CCHHHHHHHHHHHHhcCCC-CCceeccCCCCHHH---HhcCCCCCEEEEcCCcHHHHHHHH
Confidence 45566778888887775 33444454443 56764 2223331 123344 444 48988665553 4456788
Q ss_pred HHHhcCCcEEecC
Q psy15363 77 DVLWTGTPVVTLP 89 (130)
Q Consensus 77 EAla~G~PvV~~~ 89 (130)
.||..|++|++-+
T Consensus 110 ~al~aGkhV~~EK 122 (444)
T 2ixa_A 110 AAMKAGKIVGMEV 122 (444)
T ss_dssp HHHHTTCEEEECC
T ss_pred HHHHCCCeEEEeC
Confidence 9999999999864
No 86
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=86.22 E-value=3.7 Score=30.71 Aligned_cols=77 Identities=16% Similarity=0.028 Sum_probs=50.8
Q ss_pred HHHHhhC-CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhc
Q psy15363 4 IFVLKAV-PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWT 81 (130)
Q Consensus 4 ~~il~~~-P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~ 81 (130)
.+.+.+. |+.+++-+.+ ...++.+++++++|+. ++ +.+.++++.- ..+|+++-+.| ....-.+.+|+..
T Consensus 35 ~~~l~~~~~~~~lvav~d--~~~~~~~~~a~~~~~~--~~----~~~~~~ll~~-~~vD~V~i~tp~~~H~~~~~~al~a 105 (340)
T 1zh8_A 35 LPALKNLSHLFEITAVTS--RTRSHAEEFAKMVGNP--AV----FDSYEELLES-GLVDAVDLTLPVELNLPFIEKALRK 105 (340)
T ss_dssp HHHHHTTTTTEEEEEEEC--SSHHHHHHHHHHHSSC--EE----ESCHHHHHHS-SCCSEEEECCCGGGHHHHHHHHHHT
T ss_pred HHHHHhCCCceEEEEEEc--CCHHHHHHHHHHhCCC--cc----cCCHHHHhcC-CCCCEEEEeCCchHHHHHHHHHHHC
Confidence 4456667 8888877775 3456677788888762 11 2334555431 25899965554 3445678899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 106 GkhVl~EK 113 (340)
T 1zh8_A 106 GVHVICEK 113 (340)
T ss_dssp TCEEEEES
T ss_pred CCcEEEeC
Confidence 99999864
No 87
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=86.14 E-value=1.4 Score=34.14 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=50.0
Q ss_pred HHHhhCCCcEEEE-eecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh----ccccEEEcCCC-CCCchHHHHH
Q psy15363 5 FVLKAVPNSILWL-LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG----QLADVCLDTPL-CNGHTTSMDV 78 (130)
Q Consensus 5 ~il~~~P~a~l~i-~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~----~~~Dv~l~~~~-~~~g~~~lEA 78 (130)
..+...|+..++. +.+ ...++.++.++++|+...++ +-+.++++.-- ..+|+++-..| ....-.+.+|
T Consensus 57 ~~~~~~~~~~lva~v~d--~~~~~a~~~a~~~g~~~~~~----~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~a 130 (417)
T 3v5n_A 57 IAARLDDHYELVAGALS--STPEKAEASGRELGLDPSRV----YSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEF 130 (417)
T ss_dssp HHHHHTSCEEEEEEECC--SSHHHHHHHHHHHTCCGGGB----CSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHH
T ss_pred HHHhhCCCcEEEEEEeC--CCHHHHHHHHHHcCCCcccc----cCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHH
Confidence 3456677777763 543 34566778888888752122 23455554421 13898865554 4456678999
Q ss_pred HhcCCcEEecC
Q psy15363 79 LWTGTPVVTLP 89 (130)
Q Consensus 79 la~G~PvV~~~ 89 (130)
+..|++|++-+
T Consensus 131 l~aGkhVl~EK 141 (417)
T 3v5n_A 131 LKRGIHVICDK 141 (417)
T ss_dssp HTTTCEEEEES
T ss_pred HhCCCeEEEEC
Confidence 99999999864
No 88
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=86.07 E-value=2 Score=31.96 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=51.7
Q ss_pred HHHHHhhCCC--cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHH
Q psy15363 3 DIFVLKAVPN--SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVL 79 (130)
Q Consensus 3 w~~il~~~P~--a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAl 79 (130)
+.+.+.+.|+ .+++-+.+ ...++.+++++++|+. ++ .-+.++++.- ..+|+++-+.| ....-.+.+|+
T Consensus 17 ~~~~l~~~~~~~~~l~av~d--~~~~~a~~~a~~~~~~--~~----~~~~~~ll~~-~~vD~V~i~tp~~~H~~~~~~al 87 (334)
T 3ohs_X 17 FTAVLQTLPRSEHQVVAVAA--RDLSRAKEFAQKHDIP--KA----YGSYEELAKD-PNVEVAYVGTQHPQHKAAVMLCL 87 (334)
T ss_dssp HHHHHTTSCTTTEEEEEEEC--SSHHHHHHHHHHHTCS--CE----ESSHHHHHHC-TTCCEEEECCCGGGHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEEEEc--CCHHHHHHHHHHcCCC--cc----cCCHHHHhcC-CCCCEEEECCCcHHHHHHHHHHH
Confidence 4556777775 56766664 4556778888888874 22 2344555431 25899865554 34456688999
Q ss_pred hcCCcEEecC
Q psy15363 80 WTGTPVVTLP 89 (130)
Q Consensus 80 a~G~PvV~~~ 89 (130)
..|++|++-+
T Consensus 88 ~~GkhVl~EK 97 (334)
T 3ohs_X 88 AAGKAVLCEK 97 (334)
T ss_dssp HTTCEEEEES
T ss_pred hcCCEEEEEC
Confidence 9999999864
No 89
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=85.67 E-value=1 Score=34.63 Aligned_cols=79 Identities=14% Similarity=-0.025 Sum_probs=49.9
Q ss_pred HHHhhCCCcEEEE-eecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh----ccccEEEcCCC-CCCchHHHHH
Q psy15363 5 FVLKAVPNSILWL-LKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG----QLADVCLDTPL-CNGHTTSMDV 78 (130)
Q Consensus 5 ~il~~~P~a~l~i-~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~----~~~Dv~l~~~~-~~~g~~~lEA 78 (130)
..+...|+..++- +.+ ...++.++.++++|+...++ +.+.++++.-- ...|+++-..| ....-.+.+|
T Consensus 32 ~~~~~~~~~~lva~v~d--~~~~~a~~~a~~~g~~~~~~----~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~a 105 (398)
T 3dty_A 32 CAALRDNTFVLVAGAFD--IDPIRGSAFGEQLGVDSERC----YADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAA 105 (398)
T ss_dssp HHHHGGGSEEEEEEECC--SSHHHHHHHHHHTTCCGGGB----CSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHH
T ss_pred HHHhhCCCeEEEEEEeC--CCHHHHHHHHHHhCCCccee----eCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHH
Confidence 4455667777764 443 34567778888888852122 23455654421 13898854444 4456678999
Q ss_pred HhcCCcEEecC
Q psy15363 79 LWTGTPVVTLP 89 (130)
Q Consensus 79 la~G~PvV~~~ 89 (130)
+..|++|++-+
T Consensus 106 l~aGkhVl~EK 116 (398)
T 3dty_A 106 LEAGLHVVCEK 116 (398)
T ss_dssp HHTTCEEEECS
T ss_pred HHCCCeEEEeC
Confidence 99999999953
No 90
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=85.36 E-value=2.2 Score=32.10 Aligned_cols=77 Identities=12% Similarity=-0.006 Sum_probs=50.9
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
+.+.+.+.|+..++-+.+ ...++.+++++++|+. . + .+.+++..- ..+|+++-+.|. ...-.+.+|+..
T Consensus 43 ~~~~l~~~~~~~l~av~d--~~~~~~~~~a~~~g~~--~--~---~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~a 112 (350)
T 3rc1_A 43 ALPALEAEPLTEVTAIAS--RRWDRAKRFTERFGGE--P--V---EGYPALLER-DDVDAVYVPLPAVLHAEWIDRALRA 112 (350)
T ss_dssp HHHHHHHCTTEEEEEEEE--SSHHHHHHHHHHHCSE--E--E---ESHHHHHTC-TTCSEEEECCCGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCeEEEEEEc--CCHHHHHHHHHHcCCC--C--c---CCHHHHhcC-CCCCEEEECCCcHHHHHHHHHHHHC
Confidence 345667788888876664 3456677778888873 1 1 234554321 258998665554 345668899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 113 Gk~Vl~EK 120 (350)
T 3rc1_A 113 GKHVLAEK 120 (350)
T ss_dssp TCEEEEES
T ss_pred CCcEEEeC
Confidence 99999854
No 91
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=85.34 E-value=0.37 Score=35.60 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=48.4
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe-cCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~-g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
..++++|.....+..+++.+++-|...-.=+|+ |.++.... ..++.=|+.+-+-|..-...+.||...|+|||++
T Consensus 71 ~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t-~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial 146 (252)
T 3u5c_A 71 EDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT-RSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIAL 146 (252)
T ss_dssp GGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTS-TTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhh-hhccCCceEEEeCCccchHHHHHHHHcCCCEEEE
Confidence 556788865445667777788777421111234 33332211 3467778886666666678899999999999976
No 92
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=85.11 E-value=1.7 Score=27.73 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=47.5
Q ss_pred CCcEEEEeecCccc----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhc--CCc
Q psy15363 11 PNSILWLLKFPAVG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWT--GTP 84 (130)
Q Consensus 11 P~a~l~i~g~~~~~----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~--G~P 84 (130)
+.-++++++..|.. -..+++.++++|++ +.... .+..++...+...|++|-......-..-++..+- |+|
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~---v~i~a-~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ip 80 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVR---VIANS-GAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQ 80 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCS---EEEEE-EETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCc---eEEEE-cchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCc
Confidence 45667777754432 35788889999985 33322 1112233445678999865544444555666654 899
Q ss_pred EEecCCC
Q psy15363 85 VVTLPGE 91 (130)
Q Consensus 85 vV~~~g~ 91 (130)
|.+.+..
T Consensus 81 V~vI~~~ 87 (108)
T 3nbm_A 81 IVATRGM 87 (108)
T ss_dssp EEECCHH
T ss_pred EEEeCHH
Confidence 9998754
No 93
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=85.10 E-value=0.52 Score=35.68 Aligned_cols=75 Identities=9% Similarity=0.000 Sum_probs=47.9
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe-cCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFS-NVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~-g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
..++++|+....+..+++.+++-|...-.=+|+ |.++... ...++.=|+.+-+-|..-...+.||...|+|||++
T Consensus 76 ~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~-t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtIAL 151 (305)
T 3iz6_A 76 QDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL-QTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAF 151 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTT-TSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcc-cccccCCceeEEeCcccchHHHHHHHHcCCCEEEE
Confidence 456678865445666777777766431122344 3333221 12356778876666666678899999999999976
No 94
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=84.62 E-value=2.5 Score=32.92 Aligned_cols=79 Identities=11% Similarity=0.015 Sum_probs=51.0
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEEcCCCC-CCchHHHHHHh
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCLDTPLC-NGHTTSMDVLW 80 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l~~~~~-~~g~~~lEAla 80 (130)
.+.+.+.|+..++-+.+ ...+..+++++++|+....+... .+.++ ++. .+|+++...|. ...-.+.+|+.
T Consensus 100 ~~~l~~~~~~~lvav~d--~~~~~~~~~a~~~g~~~~~~~~~--~~~~~---ll~~~~vD~V~iatp~~~h~~~~~~al~ 172 (433)
T 1h6d_A 100 LPGFAGCQHSRIEALVS--GNAEKAKIVAAEYGVDPRKIYDY--SNFDK---IAKDPKIDAVYIILPNSLHAEFAIRAFK 172 (433)
T ss_dssp HHHTTTCSSEEEEEEEC--SCHHHHHHHHHHTTCCGGGEECS--SSGGG---GGGCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred HHHHhhCCCcEEEEEEc--CCHHHHHHHHHHhCCCccccccc--CCHHH---HhcCCCCCEEEEcCCchhHHHHHHHHHH
Confidence 44556678888877764 34556777788888742123322 22333 444 58998766554 44567889999
Q ss_pred cCCcEEecC
Q psy15363 81 TGTPVVTLP 89 (130)
Q Consensus 81 ~G~PvV~~~ 89 (130)
.|++|++-+
T Consensus 173 aGk~Vl~EK 181 (433)
T 1h6d_A 173 AGKHVMCEK 181 (433)
T ss_dssp TTCEEEECS
T ss_pred CCCcEEEcC
Confidence 999999854
No 95
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=84.31 E-value=3.6 Score=30.80 Aligned_cols=76 Identities=18% Similarity=0.097 Sum_probs=48.4
Q ss_pred HHHHhhC-CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 4 IFVLKAV-PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 4 ~~il~~~-P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
.+.+.+. |+..++-+.+ ...++.++.++++|+. ...+.+++..- ..+|+++-..|. ...-.+.+|+..
T Consensus 29 ~~~l~~~~~~~~lvav~d--~~~~~~~~~~~~~~~~-------~~~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~~ 98 (354)
T 3q2i_A 29 FGALEKHADRAELIDVCD--IDPAALKAAVERTGAR-------GHASLTDMLAQ-TDADIVILTTPSGLHPTQSIECSEA 98 (354)
T ss_dssp HHHHHHTTTTEEEEEEEC--SSHHHHHHHHHHHCCE-------EESCHHHHHHH-CCCSEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHhCCCCeEEEEEEc--CCHHHHHHHHHHcCCc-------eeCCHHHHhcC-CCCCEEEECCCcHHHHHHHHHHHHC
Confidence 3455566 7888776664 3455667777777741 12344554331 368988655543 345568899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 99 gk~v~~EK 106 (354)
T 3q2i_A 99 GFHVMTEK 106 (354)
T ss_dssp TCEEEECS
T ss_pred CCCEEEeC
Confidence 99999854
No 96
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=83.82 E-value=5.9 Score=24.66 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=66.0
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc------------cccEEE-cCC-CCCCchHHHH
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ------------LADVCL-DTP-LCNGHTTSMD 77 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~------------~~Dv~l-~~~-~~~~g~~~lE 77 (130)
..+++++.+.......+++.+++.|.. ..|...... ++....+. ..|+.+ |.. +...|..+++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~-~~v~~~~~~--~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 82 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVV-NPIYRCITG--DQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQ 82 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBC-SCEEEECSH--HHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCH--HHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHH
Confidence 356777876444567888888988863 456554433 44444443 468884 543 4456777788
Q ss_pred HHh-----cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 78 VLW-----TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 78 Ala-----~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
.+. ..+|+|.+.+..-..... -....|..+++.. +.+++.+...++.
T Consensus 83 ~l~~~~~~~~~~ii~~t~~~~~~~~~--~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 136 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMTTSSNPKDIE--ICYSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp HHTTSTTGGGSCEEEEESCCCHHHHH--HHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEEEeCCCCHHHHH--HHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 776 468988876543322222 1224588887653 6666666555443
No 97
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=83.77 E-value=6.3 Score=24.97 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=63.4
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc---------cccEE-EcC-CCCCCchHHHHHHh
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ---------LADVC-LDT-PLCNGHTTSMDVLW 80 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~---------~~Dv~-l~~-~~~~~g~~~lEAla 80 (130)
..+++++.+....+..+++.+++.|.. ..|... .+..+....+. ..|+. +|- .|...|..+++.+.
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~--~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~ 84 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTID-HELIIL--RDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIK 84 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSC-EEEEEE--CSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCC-ccEEEe--CCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 457778876433566788888876642 234333 33455555554 47888 454 35556777887775
Q ss_pred -----cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 81 -----TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 81 -----~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
..+|||.+.+..-..... ..+ ..|..+++.. +.+++.+...++
T Consensus 85 ~~~~~~~~piiils~~~~~~~~~-~~~-~~ga~~~l~KP~~~~~L~~~i~~~ 134 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTTSHNEDDVI-ASY-ELHVNCYLTKSRNLKDLFKMVQGI 134 (149)
T ss_dssp HCTTTTTSCEEEEESCCCHHHHH-HHH-HTTCSEEEECCSSHHHHHHHHHHH
T ss_pred hCcCcCCCeEEEEECCCChHHHH-HHH-HcCCcEEEECCCCHHHHHHHHHHH
Confidence 357988776543322222 122 4588887653 566766655443
No 98
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=83.58 E-value=3.4 Score=30.53 Aligned_cols=76 Identities=14% Similarity=0.039 Sum_probs=49.0
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCC-CchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~-~g~~~lEAla~ 81 (130)
..+.+.+.|+..++ +.+ ...+..+++++++|+. . + + .+..+.+ -..+|+++-..|.. ....+.+|+..
T Consensus 18 ~~~~l~~~~~~~l~-v~d--~~~~~~~~~a~~~g~~-~-~-~---~~~~~~l--~~~~D~V~i~tp~~~h~~~~~~al~~ 86 (323)
T 1xea_A 18 YLPVLAQWPDIELV-LCT--RNPKVLGTLATRYRVS-A-T-C---TDYRDVL--QYGVDAVMIHAATDVHSTLAAFFLHL 86 (323)
T ss_dssp HHHHHTTSTTEEEE-EEC--SCHHHHHHHHHHTTCC-C-C-C---SSTTGGG--GGCCSEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCceEE-EEe--CCHHHHHHHHHHcCCC-c-c-c---cCHHHHh--hcCCCEEEEECCchhHHHHHHHHHHC
Confidence 34556677889988 664 3456677788888874 1 1 1 1222221 25789997665543 45566789999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 87 Gk~V~~EK 94 (323)
T 1xea_A 87 GIPTFVDK 94 (323)
T ss_dssp TCCEEEES
T ss_pred CCeEEEeC
Confidence 99999753
No 99
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=83.55 E-value=1.4 Score=33.13 Aligned_cols=69 Identities=14% Similarity=0.016 Sum_probs=46.5
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC-CCCCchHHHHHHhcCCcEEecCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G~PvV~~~g 90 (130)
++++-+.+ ...++.++.++++|+. ++ +.+.+++++- ...|+++-+. +....-.+.+|+.+|++|++-+-
T Consensus 38 ~~l~av~d--~~~~~a~~~a~~~g~~--~~----~~d~~~ll~~-~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKP 107 (390)
T 4h3v_A 38 PDLNVLCG--RDAEAVRAAAGKLGWS--TT----ETDWRTLLER-DDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKP 107 (390)
T ss_dssp EEEEEEEC--SSHHHHHHHHHHHTCS--EE----ESCHHHHTTC-TTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred ceEEEEEc--CCHHHHHHHHHHcCCC--cc----cCCHHHHhcC-CCCCEEEEeCChHHHHHHHHHHHHcCCCceeecC
Confidence 47777775 4567788889999974 22 2344554321 2478885444 44556779999999999998653
No 100
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=83.51 E-value=4.8 Score=27.32 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----c-EEEcCCCCC-CchHHHHHHh----cCCcEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVLW----TGTPVVTL 88 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----D-v~l~~~~~~-~g~~~lEAla----~G~PvV~~ 88 (130)
+.+++.+.++|+ .+.|.-.=...++..+++.+ | |.++|--|+ .+..+.+|++ .++|+|=.
T Consensus 36 ~~l~~~a~~~g~---~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEV 105 (151)
T 3u80_A 36 KLCAEWGKDLGL---EVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEV 105 (151)
T ss_dssp HHHHHHHHHTTE---EEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCC---EEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEE
Confidence 456666777776 36666655566777766653 4 568888777 5788999944 59999854
No 101
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=83.43 E-value=0.97 Score=34.21 Aligned_cols=83 Identities=10% Similarity=-0.020 Sum_probs=51.0
Q ss_pred hHHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC------------CCHHHHHHhhccccEEEcCCCC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV------------AAKEEHVRRGQLADVCLDTPLC 69 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~------------~~~~~~~~~~~~~Dv~l~~~~~ 69 (130)
.+.+.+.+.|+..++.+.+.. .+....++++.|++ -.-.|.+. -+.+++ +..+|+.+.+.|.
T Consensus 16 ~~~r~l~~~~~~elvav~d~~--~~~~~~~~~~~g~~-~~~~~~~~v~~~~~~~~~v~~d~~~l---~~~vDvV~~aTp~ 89 (334)
T 2czc_A 16 RVAYAVTKQDDMELIGITKTK--PDFEAYRAKELGIP-VYAASEEFIPRFEKEGFEVAGTLNDL---LEKVDIIVDATPG 89 (334)
T ss_dssp HHHHHHHTCTTEEEEEEEESS--CSHHHHHHHHTTCC-EEESSGGGHHHHHHHTCCCSCBHHHH---HTTCSEEEECCST
T ss_pred HHHHHHhcCCCCEEEEEEcCC--HHHHHHHHHhcCcc-ccccccccceeccCCceEEcCcHHHh---ccCCCEEEECCCc
Confidence 356777888999988887532 23455667777653 11111111 123343 3589999887775
Q ss_pred CC-chHHHHHHhcCCcEEecCC
Q psy15363 70 NG-HTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 70 ~~-g~~~lEAla~G~PvV~~~g 90 (130)
+. -.....++..|++||+...
T Consensus 90 ~~h~~~a~~~l~aGk~Vi~sap 111 (334)
T 2czc_A 90 GIGAKNKPLYEKAGVKAIFQGG 111 (334)
T ss_dssp THHHHHHHHHHHHTCEEEECTT
T ss_pred cccHHHHHHHHHcCCceEeecc
Confidence 43 3445678889999997643
No 102
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=82.97 E-value=3.5 Score=30.72 Aligned_cols=75 Identities=17% Similarity=-0.003 Sum_probs=49.6
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEEcCCCC-CCchHHHHHH
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCLDTPLC-NGHTTSMDVL 79 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l~~~~~-~~g~~~lEAl 79 (130)
+.+.+.+.|+..++-+.+ ...+..+++++++|. + . ..+.++ ++. .+|+++...|. ...-.+.+|+
T Consensus 19 ~~~~l~~~~~~~l~av~d--~~~~~~~~~a~~~g~---~--~--~~~~~~---~l~~~~~D~V~i~tp~~~h~~~~~~al 86 (344)
T 3euw_A 19 HAANIAANPDLELVVIAD--PFIEGAQRLAEANGA---E--A--VASPDE---VFARDDIDGIVIGSPTSTHVDLITRAV 86 (344)
T ss_dssp HHHHHHHCTTEEEEEEEC--SSHHHHHHHHHTTTC---E--E--ESSHHH---HTTCSCCCEEEECSCGGGHHHHHHHHH
T ss_pred HHHHHHhCCCcEEEEEEC--CCHHHHHHHHHHcCC---c--e--eCCHHH---HhcCCCCCEEEEeCCchhhHHHHHHHH
Confidence 455667788888876664 345666777777663 1 1 123344 455 68988665554 4456688999
Q ss_pred hcCCcEEecC
Q psy15363 80 WTGTPVVTLP 89 (130)
Q Consensus 80 a~G~PvV~~~ 89 (130)
..|++|++-+
T Consensus 87 ~~gk~v~~EK 96 (344)
T 3euw_A 87 ERGIPALCEK 96 (344)
T ss_dssp HTTCCEEECS
T ss_pred HcCCcEEEEC
Confidence 9999999864
No 103
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=82.60 E-value=3.5 Score=26.29 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=42.5
Q ss_pred HHHHHhhCCCcEEEEeecCcc---c----------HHHHHHHHHHcCCCCCCEEEecCCCH--------HHHHHhhcccc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---G----------EANIQATAQALGLDQHRILFSNVAAK--------EEHVRRGQLAD 61 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~----------~~~l~~~~~~~g~~~~rv~f~g~~~~--------~~~~~~~~~~D 61 (130)
++++++..|+..+.|.|.... . -+.+++++.+.|++++|+...|.-.. ++-.+.=+.++
T Consensus 28 ia~~l~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~P~~~n~t~~~r~~NRRVe 107 (118)
T 2hqs_H 28 HANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAV 107 (118)
T ss_dssp HHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECTTSSCSSCCSSHHHHHHHSEEE
T ss_pred HHHHHHhCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCCCcCHHHHHhCCcEE
Confidence 567889999999999995321 1 12566777788999889988776421 22233446677
Q ss_pred EEEcCC
Q psy15363 62 VCLDTP 67 (130)
Q Consensus 62 v~l~~~ 67 (130)
|.+.|.
T Consensus 108 i~i~~~ 113 (118)
T 2hqs_H 108 LVYLEH 113 (118)
T ss_dssp EECC--
T ss_pred EEEecC
Confidence 777554
No 104
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=82.56 E-value=2.9 Score=27.38 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=34.8
Q ss_pred hHHHHHhhCCCcEEEEeecCcc---c----------HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV---G----------EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~---~----------~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.++++++.+|+.++.|.|+... . -+.+++++.+.|++++||...|+-
T Consensus 51 ~ia~~L~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G 110 (134)
T 2aiz_P 51 AHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYG 110 (134)
T ss_dssp HHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHHHCCCceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEC
Confidence 3677889999999999996321 1 125667777889998899988764
No 105
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=82.20 E-value=3.7 Score=30.32 Aligned_cols=77 Identities=10% Similarity=-0.102 Sum_probs=49.8
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
+.+.+.+.|+..++.+.+ ...+..+++++++|+. + . ..+.+++. =..+|+++...|. .....+.+|+..
T Consensus 16 ~~~~l~~~~~~~~~~v~d--~~~~~~~~~~~~~~~~--~--~--~~~~~~~l--~~~~D~V~i~tp~~~h~~~~~~al~~ 85 (325)
T 2ho3_A 16 FIEAAHTSGEYQLVAIYS--RKLETAATFASRYQNI--Q--L--FDQLEVFF--KSSFDLVYIASPNSLHFAQAKAALSA 85 (325)
T ss_dssp HHHHHHHTTSEEEEEEEC--SSHHHHHHHGGGSSSC--E--E--ESCHHHHH--TSSCSEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCeEEEEEEe--CCHHHHHHHHHHcCCC--e--E--eCCHHHHh--CCCCCEEEEeCChHHHHHHHHHHHHc
Confidence 345567788888876664 3445666677777642 1 1 12345543 1578999766553 345667899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 86 gk~V~~EK 93 (325)
T 2ho3_A 86 GKHVILEK 93 (325)
T ss_dssp TCEEEEES
T ss_pred CCcEEEec
Confidence 99999864
No 106
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=81.79 E-value=2.6 Score=31.80 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=49.0
Q ss_pred HHHHh-hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 4 IFVLK-AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 4 ~~il~-~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
.+.+. +.|+..++-+.+. ..+..++.++++|+. .++ ..+.++++.- ..+|+++-..|. ...-.+.+|+..
T Consensus 39 ~~~l~~~~~~~~lvav~d~--~~~~~~~~a~~~g~~-~~~----~~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~a 110 (357)
T 3ec7_A 39 LRRLANTVSGVEVVAVCDI--VAGRAQAALDKYAIE-AKD----YNDYHDLIND-KDVEVVIITASNEAHADVAVAALNA 110 (357)
T ss_dssp HHHHHHTCTTEEEEEEECS--STTHHHHHHHHHTCC-CEE----ESSHHHHHHC-TTCCEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHhhCCCcEEEEEEeC--CHHHHHHHHHHhCCC-Cee----eCCHHHHhcC-CCCCEEEEcCCcHHHHHHHHHHHHC
Confidence 44455 6788888766642 334567777787752 111 1334554331 248998655553 445678899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 111 Gk~Vl~EK 118 (357)
T 3ec7_A 111 NKYVFCEK 118 (357)
T ss_dssp TCEEEEES
T ss_pred CCCEEeec
Confidence 99999864
No 107
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=81.66 E-value=3.3 Score=26.72 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=34.1
Q ss_pred HHHHHhhCCCcEEEEeecCcc---c---------H-HHHHHHHHHcCCCCCCEEEecCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---G---------E-ANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~---------~-~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
++.+++.+|+.++.|.|+... . + +.+++++.+.|++.+||...|+-
T Consensus 46 ia~~l~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G 104 (129)
T 2kgw_A 46 VADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLG 104 (129)
T ss_dssp HHHHHHTCTTSCEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECT
T ss_pred HHHHHHhCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEc
Confidence 577889999999999996421 1 1 25667777789998899987764
No 108
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=81.63 E-value=14 Score=31.88 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=43.4
Q ss_pred CEEEecCCCHHHHHHhhccccEEEcCC--C-CCCchHHHHHHhcCCcEEec-CCCch
Q psy15363 41 RILFSNVAAKEEHVRRGQLADVCLDTP--L-CNGHTTSMDVLWTGTPVVTL-PGETL 93 (130)
Q Consensus 41 rv~f~g~~~~~~~~~~~~~~Dv~l~~~--~-~~~g~~~lEAla~G~PvV~~-~g~~~ 93 (130)
+|+|+..-.-.--..++..|||.+..+ + +.+||+-+=+|.-|.+.+.+ +|.+.
T Consensus 689 KVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanv 745 (879)
T 1ygp_A 689 KVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANV 745 (879)
T ss_dssp EEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHH
T ss_pred EEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhH
Confidence 899999888665666889999998765 3 56899999999999999976 56543
No 109
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=81.62 E-value=5 Score=29.74 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=47.6
Q ss_pred HHHHh-hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCC-CchHHHHHHhc
Q psy15363 4 IFVLK-AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWT 81 (130)
Q Consensus 4 ~~il~-~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~-~g~~~lEAla~ 81 (130)
.+.+. +.|+.+++.+.+ ...++.++.++++|+. ++ + .+.+++..- ..+|+++...|.. ....+.+|+..
T Consensus 24 ~~~l~~~~~~~~~vav~d--~~~~~~~~~a~~~g~~--~~-~---~~~~~~l~~-~~~D~V~i~tp~~~h~~~~~~al~~ 94 (346)
T 3cea_A 24 ARHLVNKIQGVKLVAACA--LDSNQLEWAKNELGVE--TT-Y---TNYKDMIDT-ENIDAIFIVAPTPFHPEMTIYAMNA 94 (346)
T ss_dssp HHHHHHTCSSEEEEEEEC--SCHHHHHHHHHTTCCS--EE-E---SCHHHHHTT-SCCSEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHhcCCCcEEEEEec--CCHHHHHHHHHHhCCC--cc-c---CCHHHHhcC-CCCCEEEEeCChHhHHHHHHHHHHC
Confidence 34455 678888776664 3445666777777763 21 1 233444221 2589997666543 45667889999
Q ss_pred CCcEEec
Q psy15363 82 GTPVVTL 88 (130)
Q Consensus 82 G~PvV~~ 88 (130)
|++|++-
T Consensus 95 G~~v~~e 101 (346)
T 3cea_A 95 GLNVFCE 101 (346)
T ss_dssp TCEEEEC
T ss_pred CCEEEEc
Confidence 9999985
No 110
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=81.19 E-value=5.6 Score=29.25 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=46.7
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCC-CchHHHHHHhcC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCN-GHTTSMDVLWTG 82 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~-~g~~~lEAla~G 82 (130)
.+.+.+.|+..++.+.+..+ +..+++++++|+. + .-+.+++ -..+|+++.+.|.. ..-.+.+|+..|
T Consensus 22 ~~~l~~~~~~~lvav~d~~~--~~~~~~~~~~g~~-----~--~~~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~G 89 (319)
T 1tlt_A 22 LPVLAAASDWTLQGAWSPTR--AKALPICESWRIP-----Y--ADSLSSL---AASCDAVFVHSSTASHFDVVSTLLNAG 89 (319)
T ss_dssp HHHHHSCSSEEEEEEECSSC--TTHHHHHHHHTCC-----B--CSSHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTT
T ss_pred HHHHHhCCCeEEEEEECCCH--HHHHHHHHHcCCC-----c--cCcHHHh---hcCCCEEEEeCCchhHHHHHHHHHHcC
Confidence 34556678888875554222 3355666677763 1 2233444 35799997666543 456678899999
Q ss_pred CcEEecC
Q psy15363 83 TPVVTLP 89 (130)
Q Consensus 83 ~PvV~~~ 89 (130)
++|++-+
T Consensus 90 ~~v~~eK 96 (319)
T 1tlt_A 90 VHVCVDK 96 (319)
T ss_dssp CEEEEES
T ss_pred CeEEEeC
Confidence 9999853
No 111
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=81.08 E-value=5.1 Score=25.49 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=33.7
Q ss_pred HHHHHhhCCCcEEEEeecCcc---cH----------HHHHHHHHH-cCCCCCCEEEecCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---GE----------ANIQATAQA-LGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~~----------~~l~~~~~~-~g~~~~rv~f~g~~ 48 (130)
++.+++.+|+.++.|.|+... .. ..+++++.+ +|++++|+...|.-
T Consensus 36 ~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~~Gi~~~ri~~~g~G 95 (123)
T 3td3_A 36 VAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFA 95 (123)
T ss_dssp HHHHHHHSTTCEEEEEECCCSCSCHHHHHHHHHHHHHHHHHHHHHHSCCCGGGEEEEECT
T ss_pred HHHHHHhCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCHHHEEEEEEC
Confidence 567889999999999996321 11 246666665 79998899988753
No 112
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=80.85 E-value=7.8 Score=24.03 Aligned_cols=107 Identities=10% Similarity=0.014 Sum_probs=64.5
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--------cccEE-EcCC-CCCCchHHHHHHh-
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--------LADVC-LDTP-LCNGHTTSMDVLW- 80 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--------~~Dv~-l~~~-~~~~g~~~lEAla- 80 (130)
..+++++.+.......+++.+++.|.. ..|..... .++....+. ..|+. +|.. +...|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~-~~v~~~~~--~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~ 83 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSL-IKIEIAKS--GNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRD 83 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTT-CCEEEESS--HHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEECC--HHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHc
Confidence 356777776444567888888888864 45665543 345545443 47888 4543 4456777788775
Q ss_pred ----cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHH
Q psy15363 81 ----TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAI 123 (130)
Q Consensus 81 ----~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~ 123 (130)
..+|+|.+.+..-..... -....|..+++.. +.+++.+...
T Consensus 84 ~~~~~~~~ii~ls~~~~~~~~~--~~~~~g~~~~l~kP~~~~~L~~~~~ 130 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAAYTSKDKL--AFESLNIRGHLIKPLDYGEAIKLFW 130 (143)
T ss_dssp SGGGTTCEEEEEESCCCHHHHH--HHTTTTCCEEEESSCCHHHHHHHHH
T ss_pred CccccCCcEEEEeCCCCHHHHH--HHHhcCCCeEEECCCCHHHHHHHHH
Confidence 568988876543222111 2224577777653 5666666543
No 113
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=80.70 E-value=5.5 Score=28.02 Aligned_cols=69 Identities=25% Similarity=0.150 Sum_probs=41.6
Q ss_pred HHhhccccEEEcCCCCCCch--HHHHHHhcCCcEEecCCCch-hhhhHHHHHHhcC-------CCC-ceecCHHHHHHHH
Q psy15363 54 VRRGQLADVCLDTPLCNGHT--TSMDVLWTGTPVVTLPGETL-ASRVAASQLATLG-------CPE-LIARTHKEYQDIA 122 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~~~~~g~--~~lEAla~G~PvV~~~g~~~-~~r~~~~~l~~~g-------~~~-~va~~~~~y~~~a 122 (130)
..+...+|.|+- .|-+.|+ .+.||+..|+||+.+++..+ ...+ ..++. .| .+. .+++|+++.++..
T Consensus 113 ~~m~~~sda~Iv-lpGG~GTL~E~~eal~~~kPV~lln~~g~w~~~l-~~~~~-~G~fi~~~~~~~i~~~~~~ee~~~~l 189 (195)
T 1rcu_A 113 FVLLRNADVVVS-IGGEIGTAIEILGAYALGKPVILLRGTGGWTDRI-SQVLI-DGKYLDNRRIVEIHQAWTVEEAVQII 189 (195)
T ss_dssp HHHHTTCSEEEE-ESCCHHHHHHHHHHHHTTCCEEEETTSCHHHHHG-GGGCB-TTTBSSTTCCSCEEEESSHHHHHHHH
T ss_pred HHHHHhCCEEEE-ecCCCcHHHHHHHHHhcCCCEEEECCCCccHHHH-HHHHH-cCCcCCHHHcCeEEEeCCHHHHHHHH
Confidence 345577898863 2333343 58999999999999976543 2222 11111 12 111 4568999988876
Q ss_pred HHh
Q psy15363 123 IRL 125 (130)
Q Consensus 123 ~~l 125 (130)
.++
T Consensus 190 ~~~ 192 (195)
T 1rcu_A 190 EQI 192 (195)
T ss_dssp HTC
T ss_pred HHH
Confidence 654
No 114
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=80.62 E-value=4.3 Score=27.51 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=25.2
Q ss_pred HHhhccccEEEcCCCCCC---chHHHHHHhcCCcEEecCC
Q psy15363 54 VRRGQLADVCLDTPLCNG---HTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~~~~~---g~~~lEAla~G~PvV~~~g 90 (130)
.+.++.||+++--..... +.-+-=|.+.|+||+++..
T Consensus 63 ~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~ 102 (152)
T 4fyk_A 63 LNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFR 102 (152)
T ss_dssp HHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 567889999975332222 3335558899999999644
No 115
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=80.11 E-value=12 Score=27.68 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh-cCCcEEecCCCc-h--hhhhHHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGET-L--ASRVAAS 100 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla-~G~PvV~~~g~~-~--~~r~~~~ 100 (130)
...+++.+++.|+. .+.-..+......+-..+|++==++....-..++++++ .|+||+...|.. - .-.....
T Consensus 91 l~~l~~~~~~~Gl~----~~te~~d~~~~~~l~~~vd~~kIgs~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave 166 (276)
T 1vs1_A 91 LKLLRRAGDEAGLP----VVTEVLDPRHVETVSRYADMLQIGARNMQNFPLLREVGRSGKPVLLKRGFGNTVEELLAAAE 166 (276)
T ss_dssp HHHHHHHHHHHTCC----EEEECCCGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHHHTCCEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc----EEEecCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCeEEEcCCCCCCHHHHHHHHH
Confidence 34667778888886 44444443332222233788832333323344555554 799999998875 1 2223444
Q ss_pred HHHhcCCCC
Q psy15363 101 QLATLGCPE 109 (130)
Q Consensus 101 ~l~~~g~~~ 109 (130)
.+...|.++
T Consensus 167 ~i~~~Gn~~ 175 (276)
T 1vs1_A 167 YILLEGNWQ 175 (276)
T ss_dssp HHHHTTCCC
T ss_pred HHHHcCCCe
Confidence 456667765
No 116
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=80.10 E-value=5.4 Score=29.38 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=48.1
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTG 82 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G 82 (130)
.+.+.+ |+..++.+.+ ...+..+++++++|+. ++ ..+.+++..- ..+|+++.+.|. .....+.+|+..|
T Consensus 17 ~~~l~~-~~~~~vav~d--~~~~~~~~~~~~~g~~--~~----~~~~~~~l~~-~~~D~V~i~tp~~~h~~~~~~al~~G 86 (332)
T 2glx_A 17 IGAIRA-TGGEVVSMMS--TSAERGAAYATENGIG--KS----VTSVEELVGD-PDVDAVYVSTTNELHREQTLAAIRAG 86 (332)
T ss_dssp HHHHHH-TTCEEEEEEC--SCHHHHHHHHHHTTCS--CC----BSCHHHHHTC-TTCCEEEECSCGGGHHHHHHHHHHTT
T ss_pred hHHhhc-CCCeEEEEEC--CCHHHHHHHHHHcCCC--cc----cCCHHHHhcC-CCCCEEEEeCChhHhHHHHHHHHHCC
Confidence 344555 8888876664 3455667778888863 11 2234444321 248999766554 3456678899999
Q ss_pred CcEEecC
Q psy15363 83 TPVVTLP 89 (130)
Q Consensus 83 ~PvV~~~ 89 (130)
++|++-+
T Consensus 87 k~v~~ek 93 (332)
T 2glx_A 87 KHVLCEK 93 (332)
T ss_dssp CEEEECS
T ss_pred CeEEEeC
Confidence 9999853
No 117
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=79.94 E-value=3.7 Score=29.05 Aligned_cols=112 Identities=11% Similarity=0.136 Sum_probs=64.6
Q ss_pred hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC---HHHHHHhh--ccccEEEcCCCCCCchHHHHHH--hc
Q psy15363 9 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---KEEHVRRG--QLADVCLDTPLCNGHTTSMDVL--WT 81 (130)
Q Consensus 9 ~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~---~~~~~~~~--~~~Dv~l~~~~~~~g~~~lEAl--a~ 81 (130)
..++-++++..+ ...++.|.+.+++.|..-+.+..--..+ ..+....+ ...|+.+.+|+.+- -..++.+ ..
T Consensus 107 ~~~~~~vL~~rg-~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v-~~~~~~~~~~~ 184 (229)
T 3p9z_A 107 LLEKKSVLYLRA-KEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFTAISHA-KAFLHYFEFLE 184 (229)
T ss_dssp HHTTCEEEEEEE-SSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEECSHHHH-HHHHHHSCCCT
T ss_pred hCCCCEEEEECC-ccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcCCCeEEEEECHHHH-HHHHHHhCccc
Confidence 335555555443 2345678888888997655555543332 12333333 45788887776321 1122322 12
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhccC
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGTD 128 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~d 128 (130)
++++++. +..++..++..|+.-.++ .+.+++++.+.+++.+
T Consensus 185 ~~~~~aI------G~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l~~~ 227 (229)
T 3p9z_A 185 NYTAISI------GNTTALYLQEQGIPSYIAKKPSLEACLELALSLRIK 227 (229)
T ss_dssp TCEEEES------SHHHHHHHHHTTCCEEECSSSSHHHHHHHHHHTC--
T ss_pred CCEEEEE------CHHHHHHHHHcCCCceeCCCCCHHHHHHHHHHHhhh
Confidence 4555553 345777888889875555 4788999998888654
No 118
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=79.33 E-value=6.6 Score=28.46 Aligned_cols=30 Identities=13% Similarity=-0.105 Sum_probs=21.3
Q ss_pred cccEEEcC-CCCCCchHHHHHHhcCCcEEec
Q psy15363 59 LADVCLDT-PLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 59 ~~Dv~l~~-~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.+|+.+|- .|...-..+..++..|+|+|+.
T Consensus 45 ~~DvvIDfT~p~a~~~~~~~a~~~g~~~Vig 75 (245)
T 1p9l_A 45 NTEVVIDFTHPDVVMGNLEFLIDNGIHAVVG 75 (245)
T ss_dssp TCCEEEECSCTTTHHHHHHHHHHTTCEEEEC
T ss_pred CCcEEEEccChHHHHHHHHHHHHcCCCEEEc
Confidence 68999975 4554433455678999998874
No 119
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=79.10 E-value=6.8 Score=26.62 Aligned_cols=62 Identities=6% Similarity=0.047 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCC--------HHHHHHhhccccEEE---cCCC--CCCchHHHH---HHhcCCcEEecC
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAA--------KEEHVRRGQLADVCL---DTPL--CNGHTTSMD---VLWTGTPVVTLP 89 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~--------~~~~~~~~~~~Dv~l---~~~~--~~~g~~~lE---Ala~G~PvV~~~ 89 (130)
+++++.++++|+. | |.+.-. .+.-...++.||+++ |||. .....|..| |.+.|+|||++.
T Consensus 30 ~~l~~~l~~~G~~---v-~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 30 NKVRELLKKENVM---P-LIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHHHTTTCE---E-ECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCE---E-ECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 4566667777753 3 333321 122267888999995 4542 222335555 788999999985
Q ss_pred CC
Q psy15363 90 GE 91 (130)
Q Consensus 90 g~ 91 (130)
.+
T Consensus 106 ~d 107 (161)
T 2f62_A 106 SD 107 (161)
T ss_dssp SC
T ss_pred cC
Confidence 44
No 120
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=78.86 E-value=1.3 Score=32.42 Aligned_cols=75 Identities=9% Similarity=0.024 Sum_probs=47.8
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCC-CEEEec-CCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQH-RILFSN-VAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~-rv~f~g-~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
..++++|........+++.+++.|...- .=+|+| .++.... ..++.=|+.+-+-|..-...+.||...|+|||++
T Consensus 67 ~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t-~~~~~PdlliV~Dp~~e~~ai~EA~~l~IPvIal 143 (241)
T 2xzm_B 67 EDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQT-LKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIAL 143 (241)
T ss_dssp GGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTC-TTCCCCSEEEESCTTTTHHHHHHHTTTTCCEEEC
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccc-cccCCCCEEEEECCCcchHHHHHHHHhCCCEEEE
Confidence 5667888643445567777777775311 114554 3342211 3456677776555556678999999999999987
No 121
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=78.79 E-value=9.1 Score=23.54 Aligned_cols=109 Identities=9% Similarity=0.108 Sum_probs=65.6
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--c-ccEE-EcCC-CCCCchHHHHHHh----cC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--L-ADVC-LDTP-LCNGHTTSMDVLW----TG 82 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~-~Dv~-l~~~-~~~~g~~~lEAla----~G 82 (130)
..+++++.+.......+++.+++.|. +|... .+..+....+. . .|+. +|.. +...|..+++.+. ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 81 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGI---DAVGA--DGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAA 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC---CEEEE--SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCc---eEEEe--CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCC
Confidence 46777887644456788888888875 34433 23334333332 2 6777 4543 5556788887775 34
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
+|+|.+.+..-...... ....|..+++.. +.+++.+...+..+
T Consensus 82 ~~ii~~s~~~~~~~~~~--~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (136)
T 3hdv_A 82 LSIIVVSGDTDVEEAVD--VMHLGVVDFLLKPVDLGKLLELVNKELK 126 (136)
T ss_dssp CEEEEEESSCCHHHHHH--HHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCChHHHHH--HHhCCcceEEeCCCCHHHHHHHHHHHhc
Confidence 78888765433222221 224588887653 77888877766654
No 122
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=78.32 E-value=5.5 Score=30.47 Aligned_cols=70 Identities=21% Similarity=0.106 Sum_probs=47.6
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC-CCCCchHHHHHHhcCCcEEecCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G~PvV~~~g 90 (130)
+++|+-+.+ ...++.++.++++|+. ++ +-+.+++++- ...|+++-+. +....-.+.+|+.+|++|++-+-
T Consensus 58 ~~elvav~d--~~~~~a~~~a~~~~~~--~~----y~d~~~ll~~-~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP 128 (412)
T 4gqa_A 58 RPHLYALAD--QDQAMAERHAAKLGAE--KA----YGDWRELVND-PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKP 128 (412)
T ss_dssp EEEEEEEEC--SSHHHHHHHHHHHTCS--EE----ESSHHHHHHC-TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred CeEEEEEEc--CCHHHHHHHHHHcCCC--eE----ECCHHHHhcC-CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecC
Confidence 567777775 4567788888999874 32 2345555431 2478885444 44556779999999999998653
No 123
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=78.29 E-value=5.9 Score=27.32 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=39.6
Q ss_pred HHHHHH--HHcCCCCCCEEEecCCCHHHHHHhhcccc------EEEcCCCCC-CchHHHHHH-hcCCcEEec
Q psy15363 27 NIQATA--QALGLDQHRILFSNVAAKEEHVRRGQLAD------VCLDTPLCN-GHTTSMDVL-WTGTPVVTL 88 (130)
Q Consensus 27 ~l~~~~--~~~g~~~~rv~f~g~~~~~~~~~~~~~~D------v~l~~~~~~-~g~~~lEAl-a~G~PvV~~ 88 (130)
.+++.+ .++|+ .+.|.-.=...++..+++.+. |.++|--|+ .+..+.+|+ +.++|+|=.
T Consensus 47 ~l~~~a~~~~~g~---~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSvAlrDAL~~v~~P~VEV 115 (167)
T 3kip_A 47 AAIEQAKLKNNDS---EVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSVGIRDALLGTAIPFIEV 115 (167)
T ss_dssp HHHHHHHHTCSSC---EEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhccccCCc---EEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccHHHHHHHHhcCCCEEEE
Confidence 444445 44444 466666555667777776654 668887776 578899998 568999854
No 124
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=77.93 E-value=7.5 Score=30.23 Aligned_cols=80 Identities=13% Similarity=-0.075 Sum_probs=53.0
Q ss_pred HHHHHhhC-CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHh
Q psy15363 3 DIFVLKAV-PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLW 80 (130)
Q Consensus 3 w~~il~~~-P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla 80 (130)
..+.+.+. |+.+++-+.+ ...++.+++++++|+. + +... .+.++++.- ..+|+++-+.|. ...-.+.+|+.
T Consensus 39 ~~~~l~~~~~~~~lvav~d--~~~~~~~~~a~~~g~~-~-~~~~--~~~~~ll~~-~~vD~V~i~tp~~~H~~~~~~al~ 111 (438)
T 3btv_A 39 HYPAILQLSSQFQITALYS--PKIETSIATIQRLKLS-N-ATAF--PTLESFASS-STIDMIVIAIQVASHYEVVMPLLE 111 (438)
T ss_dssp HHHHHHHTTTTEEEEEEEC--SSHHHHHHHHHHTTCT-T-CEEE--SSHHHHHHC-SSCSEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEEEe--CCHHHHHHHHHHcCCC-c-ceee--CCHHHHhcC-CCCCEEEEeCCcHHHHHHHHHHHH
Confidence 45667777 8999887775 3456677888888874 2 2222 234554321 258999766553 34566888999
Q ss_pred cC------CcEEecC
Q psy15363 81 TG------TPVVTLP 89 (130)
Q Consensus 81 ~G------~PvV~~~ 89 (130)
.| ++|++-+
T Consensus 112 aG~~~~~~khVl~EK 126 (438)
T 3btv_A 112 FSKNNPNLKYLFVEW 126 (438)
T ss_dssp HGGGCTTCCEEEEES
T ss_pred CCCCcccceeEEecC
Confidence 99 9999864
No 125
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=77.93 E-value=9.9 Score=23.51 Aligned_cols=111 Identities=7% Similarity=-0.029 Sum_probs=65.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc-------ccEE-EcC-CCCCCchHHHHHHhc-
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-------ADVC-LDT-PLCNGHTTSMDVLWT- 81 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~-------~Dv~-l~~-~~~~~g~~~lEAla~- 81 (130)
..+++++.+....+..++..+++.|.. ..|.... +.++....+.. .|++ +|. .|...|..+++.+..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~-~~v~~~~--~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRV-EEIQSVT--SGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQH 85 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCE-EEEEEES--SHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCC-eeeeecC--CHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 356777876433466778888877652 2444433 34555555543 7888 554 355567777777654
Q ss_pred ------CCcEEecCCCchhhhhHHHHHHhcC-CCCceec--CHHHHHHHHHHhcc
Q psy15363 82 ------GTPVVTLPGETLASRVAASQLATLG-CPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 82 ------G~PvV~~~g~~~~~r~~~~~l~~~g-~~~~va~--~~~~y~~~a~~l~~ 127 (130)
.+|+|.+.+..-..... . ....| ..+++.. +.+++.+...+..+
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~-~-~~~~g~~~~~l~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQA-K-AEASDWVDYYVSKPLTANALNNLYNKVLN 138 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHH-H-HHHCSSCCEEECSSCCHHHHHHHHHHHHC
T ss_pred hhhccCCCeEEEEeCCCChHHHH-H-HHhcCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 68888776543322221 1 22345 7777653 67788777766554
No 126
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=77.89 E-value=6.1 Score=26.84 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=44.1
Q ss_pred HHHHHhhCCCcEEEEeecCc---cc---------H-HHHHHHHHHcCCCCCCEEEecCCCHH--------HHHHhhcccc
Q psy15363 3 DIFVLKAVPNSILWLLKFPA---VG---------E-ANIQATAQALGLDQHRILFSNVAAKE--------EHVRRGQLAD 61 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~---~~---------~-~~l~~~~~~~g~~~~rv~f~g~~~~~--------~~~~~~~~~D 61 (130)
++.+++++|+.++.|.|+.. .. | +.+++++.+.|++++|+...|+-... +-.+.=+.++
T Consensus 76 la~~l~~~~~~~i~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G~~~P~~~n~t~~~r~~NRRVe 155 (169)
T 3ldt_A 76 VIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIE 155 (169)
T ss_dssp HHHHHTTCTTSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTCCTTTEEECCTTCTTSCCCTTTSCGGGGTSEEE
T ss_pred HHHHHHhCCCCeEEEEeEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEECCcCCCCCCCChhHHHhcCcEE
Confidence 57789999999999999632 11 1 25667788889999999988764311 1123346677
Q ss_pred EEEcCC
Q psy15363 62 VCLDTP 67 (130)
Q Consensus 62 v~l~~~ 67 (130)
|.+.+.
T Consensus 156 i~~~~~ 161 (169)
T 3ldt_A 156 IQWFTS 161 (169)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 777554
No 127
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=77.83 E-value=10 Score=23.64 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=65.1
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHhc-----
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLWT----- 81 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla~----- 81 (130)
...+++++.+.......+++.+++.|. +|.... +.++....+. ..|++ +|. .+...|..+++.+..
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 81 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGF---DIIQCG--NAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTA 81 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTE---EEEEES--SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCC---eEEEeC--CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccC
Confidence 356788888654557788888888775 344333 3345444443 37888 454 345567888888764
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
.+|||.+.+..-...... ....|..+++.. +.+++.+...+++
T Consensus 82 ~~pii~ls~~~~~~~~~~--~~~~g~~~~l~kp~~~~~L~~~i~~~~ 126 (147)
T 2zay_A 82 SIPVIALSGRATAKEEAQ--LLDMGFIDFIAKPVNAIRLSARIKRVL 126 (147)
T ss_dssp TSCEEEEESSCCHHHHHH--HHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHH--HHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 689988765433222221 224588887653 5666666555443
No 128
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=76.77 E-value=12 Score=23.65 Aligned_cols=113 Identities=11% Similarity=0.006 Sum_probs=65.9
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh--ccccEE-EcCC-CCCCchHHHHHHh---cC
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG--QLADVC-LDTP-LCNGHTTSMDVLW---TG 82 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~--~~~Dv~-l~~~-~~~~g~~~lEAla---~G 82 (130)
.+..+++++.+.....+.+++.+++.|-. ..|... .+.++....+ ...|+. +|.. +...|..+++.+. ..
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~--~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~ 89 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSV-NVVGEA--DDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELP 89 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSE-EEEEEE--SSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCS
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCe-EEEEEe--CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 34678888886444567788888887631 122222 2334444444 347887 4543 5556777776664 46
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
+|||.+.+..-...... ....|..+++.. +.+++.+...++++
T Consensus 90 ~~ii~~s~~~~~~~~~~--~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQ--ALQQGAAGFLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp CEEEEEESCCCHHHHHH--HHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred CeEEEEEccCCHHHHHH--HHHcCCCEEEecCCCHHHHHHHHHHHHc
Confidence 88888765433322221 224588887663 67788777766654
No 129
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=76.64 E-value=2.4 Score=32.09 Aligned_cols=78 Identities=6% Similarity=-0.107 Sum_probs=48.4
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~ 81 (130)
+.+.+.+.|+..++-+.+ ...++.++++++++.. ++. -+.+++++- ...|+++-..| ....-.+.+|+..
T Consensus 21 ~~~~l~~~~~~~l~av~d--~~~~~~~~~a~~~~~~--~~~----~~~~~ll~~-~~vD~V~i~tp~~~H~~~~~~al~a 91 (359)
T 3m2t_A 21 LLPSLLQMQDIRIVAACD--SDLERARRVHRFISDI--PVL----DNVPAMLNQ-VPLDAVVMAGPPQLHFEMGLLAMSK 91 (359)
T ss_dssp HHHHHHTCTTEEEEEEEC--SSHHHHGGGGGTSCSC--CEE----SSHHHHHHH-SCCSEEEECSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcEEEEEEc--CCHHHHHHHHHhcCCC--ccc----CCHHHHhcC-CCCCEEEEcCCcHHHHHHHHHHHHC
Confidence 345667888988886664 3445556666665432 221 244555431 24588865554 3345668899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 92 GkhVl~EK 99 (359)
T 3m2t_A 92 GVNVFVEK 99 (359)
T ss_dssp TCEEEECS
T ss_pred CCeEEEEC
Confidence 99999854
No 130
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=76.36 E-value=21 Score=26.60 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHhcCCcEEecCCCc--h-hhhhHHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLWTGTPVVTLPGET--L-ASRVAAS 100 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla~G~PvV~~~g~~--~-~~r~~~~ 100 (130)
.+.+++..++.|+. ++.-..+.+....+...+|++ +-++-...---+-++-..|+||+..+|-. . .-...+.
T Consensus 80 L~~L~~~~~e~Glp----~~Tev~d~~~v~~l~~~vd~lqIgA~~~~n~~LLr~va~~gkPVilK~G~~~t~~ei~~ave 155 (285)
T 3sz8_A 80 LKIFAEVKARFGVP----VITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVS 155 (285)
T ss_dssp HHHHHHHHHHHCCC----EEEECCSGGGHHHHHTTCSEEEECGGGTTCHHHHHHHHHTSSCEEEECCTTSCGGGTHHHHH
T ss_pred HHHHHHHHHhcCCe----EEEEeCCHHHHHHHHHhCCEEEECccccCCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHH
Confidence 34677888899986 444445443333333448888 54433322223445557899999998863 2 2234556
Q ss_pred HHHhcCCCCc
Q psy15363 101 QLATLGCPEL 110 (130)
Q Consensus 101 ~l~~~g~~~~ 110 (130)
.+...|.+++
T Consensus 156 ~i~~~Gn~~i 165 (285)
T 3sz8_A 156 KCGEVGNDRV 165 (285)
T ss_dssp HHHHTTCCCE
T ss_pred HHHHcCCCcE
Confidence 6666777763
No 131
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=76.15 E-value=7.3 Score=24.63 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=39.7
Q ss_pred cEEEEeecCccc-----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhc-CCcEE
Q psy15363 13 SILWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWT-GTPVV 86 (130)
Q Consensus 13 a~l~i~g~~~~~-----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~-G~PvV 86 (130)
-+++++++.|.. ..++++.+++.|++ -.|.-.+... +...+..+|+++.+.+... .. ++||+
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~-~~V~~~~~~~---~~~~~~~~DlIist~~l~~--------~~~~ipvi 89 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNE---IETYMDGVHLICTTARVDR--------SFGDIPLV 89 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCC-EEEEEECTTT---TTTSTTSCSEEEESSCCCC--------CSTTCCEE
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEecHHH---HhhccCCCCEEEECCcccc--------ccCCCCEE
Confidence 456677655543 46788889999985 3444444332 2223467999998876541 12 67987
Q ss_pred e
Q psy15363 87 T 87 (130)
Q Consensus 87 ~ 87 (130)
.
T Consensus 90 ~ 90 (113)
T 1tvm_A 90 H 90 (113)
T ss_dssp C
T ss_pred E
Confidence 5
No 132
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=76.09 E-value=4.2 Score=30.73 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=46.8
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEEec
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~ 88 (130)
.|++.|+-+.+ ...++.++.++++|.. ++ +.+.++++.- ...|+++-..| ....-.+..|+..|++|++-
T Consensus 48 ~~~~~lvav~d--~~~~~a~~~a~~~~~~--~~----~~~~~~ll~~-~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~E 118 (361)
T 3u3x_A 48 RAGARLAGFHE--KDDALAAEFSAVYADA--RR----IATAEEILED-ENIGLIVSAAVSSERAELAIRAMQHGKDVLVD 118 (361)
T ss_dssp HTTCEEEEEEC--SCHHHHHHHHHHSSSC--CE----ESCHHHHHTC-TTCCEEEECCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCcEEEEEEc--CCHHHHHHHHHHcCCC--cc----cCCHHHHhcC-CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEe
Confidence 38888887775 3456677788887742 22 2344555431 23888865554 33456688999999999996
Q ss_pred CC
Q psy15363 89 PG 90 (130)
Q Consensus 89 ~g 90 (130)
+-
T Consensus 119 KP 120 (361)
T 3u3x_A 119 KP 120 (361)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 133
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=76.04 E-value=16 Score=24.84 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=44.2
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC-CCHHHHHHhhcccc---EEEcCCCCC-----CchHHHHHHhcCCc
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-AAKEEHVRRGQLAD---VCLDTPLCN-----GHTTSMDVLWTGTP 84 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~-~~~~~~~~~~~~~D---v~l~~~~~~-----~g~~~lEAla~G~P 84 (130)
+++|+-..+.....+.++++++|.. +..+.. .+.+++...+...| +++.+-|.+ .-..+++++..|+|
T Consensus 2 ~i~iiDn~~s~~~~i~~~l~~~G~~---~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~P 78 (192)
T 1i1q_B 2 DILLLDNIDSFTWNLADQLRTNGHN---VVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLP 78 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCE---EEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBC
T ss_pred cEEEEECCccHHHHHHHHHHHCCCe---EEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCC
Confidence 4456653334567788889998863 444433 34456655544434 888766543 12347788888999
Q ss_pred EEec
Q psy15363 85 VVTL 88 (130)
Q Consensus 85 vV~~ 88 (130)
++..
T Consensus 79 ilGI 82 (192)
T 1i1q_B 79 IIGI 82 (192)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9853
No 134
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=75.87 E-value=12 Score=23.52 Aligned_cols=110 Identities=11% Similarity=0.045 Sum_probs=59.7
Q ss_pred CcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhcc---ccEEE-cCC-CCCCchHHHHHHh---cC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQL---ADVCL-DTP-LCNGHTTSMDVLW---TG 82 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~---~Dv~l-~~~-~~~~g~~~lEAla---~G 82 (130)
+.+++++.+.......+++.+++. |. ..|.... +.++....+.. .|+++ |.. +...|..+++.+. ..
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~--~~v~~~~--~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~ 78 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSG--MRVEGAE--TVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPS 78 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTT--EEEEEES--SHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTT
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEec--CHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 356778876444567788888876 54 2344333 33555555533 78885 432 4445666666664 47
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
+|+|.+.+..-..... . ....|..+++.. +.+++.+...++.+
T Consensus 79 ~~ii~ls~~~~~~~~~-~-~~~~g~~~~l~kp~~~~~L~~~l~~~~~ 123 (154)
T 2qsj_A 79 NAVALISGETDHELIR-A-ALEAGADGFIPKSADPQVLIHAVSLILE 123 (154)
T ss_dssp SEEEEC-----CHHHH-H-HHHTTCCBBCCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCHHHHH-H-HHHccCCEEEeCCCCHHHHHHHHHHHHc
Confidence 8999886543222221 1 224588887653 66777776666544
No 135
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=75.65 E-value=6.8 Score=24.56 Aligned_cols=72 Identities=21% Similarity=0.201 Sum_probs=42.9
Q ss_pred EEEEeecCccc----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 14 ILWLLKFPAVG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 14 ~l~i~g~~~~~----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
+++++++.|-. -+.+++.++++|++ -.|.-.+.-...+. ...+|+++-+........-++..+-.+||-+.+
T Consensus 5 kIll~Cg~G~sTS~l~~k~~~~~~~~gi~-~~i~a~~~~~~~~~---~~~~Dvil~~pqv~~~~~~~~~~~~~~~v~vI~ 80 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVSKMRAQAEKYEVP-VIIEAFPETLAGEK---GQNADVVLLGPQIAYMLPEIQRLLPNKPVEVID 80 (106)
T ss_dssp EEEEECSSSTTTHHHHHHHHHHHHHSCCS-EEEEEECSSSTTHH---HHHCSEEEECTTSGGGHHHHHHHSSSSCCCBCC
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCC-eEEEEecHHHHHhh---ccCCCEEEEccchhhhHHHHHHHhcCCCceEEC
Confidence 45555544432 45889999999996 44444444433333 457899987665555555666655444444333
No 136
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=75.55 E-value=16 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=22.9
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecC
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~ 89 (130)
.=|+.+-.-|..-...+.||...|+|||+.-
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaiv 187 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLI 187 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECC
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEe
Confidence 3566654444445689999999999999873
No 137
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=75.05 E-value=7.1 Score=25.82 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=42.5
Q ss_pred HHHHHhhCCCcEEEEeecCcc---c---------H-HHHHHHHHHcCCCCCCEEEecCCC--------HHHHHHhhcccc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---G---------E-ANIQATAQALGLDQHRILFSNVAA--------KEEHVRRGQLAD 61 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~---------~-~~l~~~~~~~g~~~~rv~f~g~~~--------~~~~~~~~~~~D 61 (130)
++.+++..|+..+.|.|.... . + +.+++++.+.|++++|+...|.-. .++-...=+.++
T Consensus 56 ia~~L~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G~~~p~~~n~t~~~~~~NRRVe 135 (149)
T 2k1s_A 56 VAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVE 135 (149)
T ss_dssp HHHHHHHCTTEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECTTTCCSSCSSSHHHHHHHSEEE
T ss_pred HHHHHHhCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEcCCCcCCCCcChhHHHhCCcEE
Confidence 567889999999999996321 1 1 245666777899988999887632 122234446677
Q ss_pred EEEcC
Q psy15363 62 VCLDT 66 (130)
Q Consensus 62 v~l~~ 66 (130)
|.+.+
T Consensus 136 i~i~~ 140 (149)
T 2k1s_A 136 ITLSP 140 (149)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 77644
No 138
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=74.96 E-value=11 Score=29.89 Aligned_cols=80 Identities=10% Similarity=-0.033 Sum_probs=52.6
Q ss_pred HHHHHhhC-CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHh
Q psy15363 3 DIFVLKAV-PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLW 80 (130)
Q Consensus 3 w~~il~~~-P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla 80 (130)
..+.+.+. |+++++-+.+ ...++.++.++++|+. + +... .+.+++++- ..+|+++-+.|. ...-.+.+|+.
T Consensus 58 h~~~l~~~~~~~~lvav~d--~~~~~a~~~a~~~g~~-~-~~~~--~d~~ell~~-~~vD~V~I~tp~~~H~~~~~~al~ 130 (479)
T 2nvw_A 58 HFLAIQQLSSQFQIVALYN--PTLKSSLQTIEQLQLK-H-ATGF--DSLESFAQY-KDIDMIVVSVKVPEHYEVVKNILE 130 (479)
T ss_dssp HHHHHHHTTTTEEEEEEEC--SCHHHHHHHHHHTTCT-T-CEEE--SCHHHHHHC-TTCSEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEEEe--CCHHHHHHHHHHcCCC-c-ceee--CCHHHHhcC-CCCCEEEEcCCcHHHHHHHHHHHH
Confidence 34566677 8898887775 3456777888888874 2 2222 234555321 258998665553 34566888999
Q ss_pred cC------CcEEecC
Q psy15363 81 TG------TPVVTLP 89 (130)
Q Consensus 81 ~G------~PvV~~~ 89 (130)
.| ++|++-+
T Consensus 131 aG~~~~~~khVl~EK 145 (479)
T 2nvw_A 131 HSSQNLNLRYLYVEW 145 (479)
T ss_dssp HSSSCSSCCEEEEES
T ss_pred CCCCcCCceeEEEeC
Confidence 99 9999854
No 139
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=74.95 E-value=12 Score=23.09 Aligned_cols=109 Identities=8% Similarity=0.051 Sum_probs=65.7
Q ss_pred CcEEEEeecCcccHHHHHHHHHH-cCCCCCCEEEecCCCHHHHHHhhcc---ccEEE-cCC-C-CCCchHHHHHHhc---
Q psy15363 12 NSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQL---ADVCL-DTP-L-CNGHTTSMDVLWT--- 81 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~-~g~~~~rv~f~g~~~~~~~~~~~~~---~Dv~l-~~~-~-~~~g~~~lEAla~--- 81 (130)
..+++++.+....+..+++.+++ .|. +|.. ..+.++....+.. .|+++ |.. | ...|..+++.+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~---~v~~--~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~ 78 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEY---DFIE--VENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSR 78 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCC---EEEE--ECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCc---cEEE--ECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcc
Confidence 35777887644456778888887 665 3443 2344666666644 78885 432 4 3346667766554
Q ss_pred --CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 82 --GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 82 --G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
.+|||.+.+..-...... ....|..+++.. +.+++.+...++++
T Consensus 79 ~~~~~ii~ls~~~~~~~~~~--~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (140)
T 3lua_A 79 TANTPVIIATKSDNPGYRHA--ALKFKVSDYILKPYPTKRLENSVRSVLK 126 (140)
T ss_dssp GTTCCEEEEESCCCHHHHHH--HHHSCCSEEEESSCCTTHHHHHHHHHHC
T ss_pred cCCCCEEEEeCCCCHHHHHH--HHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 799998866533222221 224688887663 66777777666554
No 140
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=74.93 E-value=15 Score=27.48 Aligned_cols=76 Identities=16% Similarity=0.041 Sum_probs=47.8
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWT 81 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~ 81 (130)
..+.+.+.|+..++-+.+. ..++.+ .+++.|+. ..-+.++++.- ..+|+++-..|. ...-.+.+|+..
T Consensus 20 ~~~~l~~~~~~~l~av~d~--~~~~~~-~a~~~g~~-------~~~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~a 88 (359)
T 3e18_A 20 HVTLASAADNLEVHGVFDI--LAEKRE-AAAQKGLK-------IYESYEAVLAD-EKVDAVLIATPNDSHKELAISALEA 88 (359)
T ss_dssp HHHHHHTSTTEEEEEEECS--SHHHHH-HHHTTTCC-------BCSCHHHHHHC-TTCCEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCcEEEEEEcC--CHHHHH-HHHhcCCc-------eeCCHHHHhcC-CCCCEEEEcCCcHHHHHHHHHHHHC
Confidence 3456777888888777643 233333 45666652 12344555431 268998665554 345668899999
Q ss_pred CCcEEecC
Q psy15363 82 GTPVVTLP 89 (130)
Q Consensus 82 G~PvV~~~ 89 (130)
|++|++-+
T Consensus 89 GkhVl~EK 96 (359)
T 3e18_A 89 GKHVVCEK 96 (359)
T ss_dssp TCEEEEES
T ss_pred CCCEEeeC
Confidence 99999864
No 141
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=74.77 E-value=0.77 Score=34.29 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=23.5
Q ss_pred cccEEEcCCCC-CCchHHHHHHhcCCcEEecC
Q psy15363 59 LADVCLDTPLC-NGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 59 ~~Dv~l~~~~~-~~g~~~lEAla~G~PvV~~~ 89 (130)
.+|+++-..|. ...-.+.+|+..|++|++-+
T Consensus 67 ~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EK 98 (329)
T 3evn_A 67 SIDVIYVATINQDHYKVAKAALLAGKHVLVEK 98 (329)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCCEEEECCCcHHHHHHHHHHHHCCCeEEEcc
Confidence 68988665553 44566889999999999864
No 142
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=74.53 E-value=7.9 Score=24.52 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=34.7
Q ss_pred HHHHHhhCCCcEEEEeecCcc---cH----------HHHHHHHHHcCCC-CCCEEEecCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---GE----------ANIQATAQALGLD-QHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~~----------~~l~~~~~~~g~~-~~rv~f~g~~ 48 (130)
++.+++.+|+.++.|.|+... .. ..+++++.+.|++ ++|+...|.-
T Consensus 39 ~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~g~G 98 (123)
T 3oon_A 39 IAKLLEKFKKNNILIEGHTEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKDQILFKGWG 98 (123)
T ss_dssp HHHHHHHSCSCCEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEECT
T ss_pred HHHHHHHCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCchHeEEEEEEc
Confidence 567899999999999996421 11 2566777888998 8899988764
No 143
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=74.45 E-value=4.2 Score=29.28 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=26.1
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecCCC
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
.-|++||+|- |+|+|.++|+..|.-+|...-.
T Consensus 212 ~~~~vlD~f~-GsGtt~~~a~~~gr~~ig~e~~ 243 (260)
T 1g60_A 212 PNDLVLDCFM-GSGTTAIVAKKLGRNFIGCDMN 243 (260)
T ss_dssp TTCEEEESSC-TTCHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEECCC-CCCHHHHHHHHcCCeEEEEeCC
Confidence 4689999874 5689999999999998876544
No 144
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=74.11 E-value=5.6 Score=31.56 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=50.5
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEe----------------cCCCHHHHHHhhccccEEEc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFS----------------NVAAKEEHVRRGQLADVCLD 65 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~----------------g~~~~~~~~~~~~~~Dv~l~ 65 (130)
+.+.+.+.|+.+++-+.+ ...++.++.++++ |.. ..+... -.-+.+++.+ -..+|+++.
T Consensus 38 ~~~~l~~~~~veLvAV~D--~~~era~~~a~~~yG~~-~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL~-d~dIDaVvi 113 (446)
T 3upl_A 38 IVTQVARMQGIEVGALSA--RRLPNTFKAIRTAYGDE-ENAREATTESAMTRAIEAGKIAVTDDNDLILS-NPLIDVIID 113 (446)
T ss_dssp HHHHHTTSSSEEEEEEEC--SSTHHHHHHHHHHHSSS-TTEEECSSHHHHHHHHHTTCEEEESCHHHHHT-CTTCCEEEE
T ss_pred HHHHHhhCCCcEEEEEEe--CCHHHHHHHHHHhcCCc-cccccccchhhhhhhhccCCceEECCHHHHhc-CCCCCEEEE
Confidence 345566788999888885 3345566666665 721 333211 1223344432 125899986
Q ss_pred CCCC--CCchHHHHHHhcCCcEEecC
Q psy15363 66 TPLC--NGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 66 ~~~~--~~g~~~lEAla~G~PvV~~~ 89 (130)
..|. ..--.+++|+..|+.|++.+
T Consensus 114 aTp~p~~H~e~a~~AL~AGKHVv~~n 139 (446)
T 3upl_A 114 ATGIPEVGAETGIAAIRNGKHLVMMN 139 (446)
T ss_dssp CSCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred cCCChHHHHHHHHHHHHcCCcEEecC
Confidence 5543 23456899999999999854
No 145
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=73.96 E-value=1.6 Score=32.25 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=46.1
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEec-CCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g-~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
..++++|......+.+++.+++.|...-.=+|+| .++.... ..++.=|+.+-+-|..-...+.||...|+|||++
T Consensus 105 ~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~-~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIal 180 (253)
T 3bch_A 105 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ-AAFREPRLLVVTDPRADHQPLTEASYVNLPTIAL 180 (253)
T ss_dssp GGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSC-STTCSCSEEEESCTTTTHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccc-cccCCCCEEEEECCCccchHHHHHHHhCCCEEEE
Confidence 5567788654455667777777774311112333 2332111 2345667775455555668899999999999987
No 146
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=73.67 E-value=26 Score=26.27 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHhcCCcEEecCCCc--h-hhhhHHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLWTGTPVVTLPGET--L-ASRVAAS 100 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla~G~PvV~~~g~~--~-~~r~~~~ 100 (130)
.+.|++..++.|+. ++.-..+.+....+...+|++ +-++-...---+-++-..|+||+..+|-. . .-...+.
T Consensus 101 L~~L~~~~~e~GLp----v~Tev~D~~~v~~l~~~vd~lkIgA~~~~n~~LLr~va~~gkPVilK~Gms~t~~ei~~ave 176 (298)
T 3fs2_A 101 LEVFSDLKKEYGFP----VLTDIHTEEQCAAVAPVVDVLQIPAFLCRQTDLLIAAARTGRVVNVKKGQFLAPWDMKNVLA 176 (298)
T ss_dssp HHHHHHHHHHHCCC----EEEECCSHHHHHHHTTTCSEEEECGGGTTCHHHHHHHHHTTSEEEEECCTTCCGGGHHHHHH
T ss_pred HHHHHHHHHhcCCe----EEEEeCCHHHHHHHHhhCCEEEECccccCCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHH
Confidence 34677888898986 555555655444344458888 54433322223445667899999998853 2 2234555
Q ss_pred HHHhcCCCCc
Q psy15363 101 QLATLGCPEL 110 (130)
Q Consensus 101 ~l~~~g~~~~ 110 (130)
.+...|.+++
T Consensus 177 ~i~~~Gn~~i 186 (298)
T 3fs2_A 177 KITESGNPNV 186 (298)
T ss_dssp HHHTTTCCCE
T ss_pred HHHHcCCCeE
Confidence 6666677663
No 147
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=72.96 E-value=14 Score=22.95 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=63.5
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcC-CCCCCEEEecCCCHHHHHHhh---ccccEEE-cCC-CCCCchHHHHHHh---c
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALG-LDQHRILFSNVAAKEEHVRRG---QLADVCL-DTP-LCNGHTTSMDVLW---T 81 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g-~~~~rv~f~g~~~~~~~~~~~---~~~Dv~l-~~~-~~~~g~~~lEAla---~ 81 (130)
+..+++++.+.......+++.+++.| . +|..... ..+.+..+. ...|+++ |.. +...|..+++.+. -
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~---~v~~~~~-~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 94 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRY---RVTRTVG-RAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHP 94 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSC---EEEEECC-CHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCe---EEEEeCC-HHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCC
Confidence 34678888764445678888888877 4 3433222 223343333 4578885 443 4444666666554 3
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
.+|||.+.+..-...... ....|..+++.. +.+++.....++++
T Consensus 95 ~~~ii~lt~~~~~~~~~~--~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLD--AMRAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCEEEEEESCCCHHHHHH--HHTTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHH--HHHhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 789988766433222221 124577776653 67777776666544
No 148
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=72.83 E-value=14 Score=25.17 Aligned_cols=73 Identities=10% Similarity=-0.003 Sum_probs=41.1
Q ss_pred HHhhccccEEEcCCC--CCCchH---HHHHHhcCCcEEecCCCchh-hhhHHHHH---HhcC----------------CC
Q psy15363 54 VRRGQLADVCLDTPL--CNGHTT---SMDVLWTGTPVVTLPGETLA-SRVAASQL---ATLG----------------CP 108 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~~--~~~g~~---~lEAla~G~PvV~~~g~~~~-~r~~~~~l---~~~g----------------~~ 108 (130)
...++.||+++--+. ....-| +-=|.+.|+||++...+.-. +.....-+ +... ..
T Consensus 64 ~~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~ 143 (162)
T 3ehd_A 64 TENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLN 143 (162)
T ss_dssp HHHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTT
T ss_pred HHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhC
Confidence 456788999875332 112233 44488999999998655321 11111111 1111 13
Q ss_pred CceecCHHHHHHHHHHhc
Q psy15363 109 ELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 109 ~~va~~~~~y~~~a~~l~ 126 (130)
+-+.+|.++.++...+++
T Consensus 144 g~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 144 GRVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEEESSHHHHHHHHHHTC
T ss_pred CeEEeCHHHHHHHHHHHh
Confidence 456688888888777654
No 149
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=72.55 E-value=31 Score=26.67 Aligned_cols=98 Identities=12% Similarity=-0.006 Sum_probs=59.8
Q ss_pred HHHHHHcCCCCC-CEEEecCCCHHHHHHhhcc------ccEE-EcCCC-CCCchH----HHHHH---hcCCcEEecC-CC
Q psy15363 29 QATAQALGLDQH-RILFSNVAAKEEHVRRGQL------ADVC-LDTPL-CNGHTT----SMDVL---WTGTPVVTLP-GE 91 (130)
Q Consensus 29 ~~~~~~~g~~~~-rv~f~g~~~~~~~~~~~~~------~Dv~-l~~~~-~~~g~~----~lEAl---a~G~PvV~~~-g~ 91 (130)
...+..+|..+. -+.+.|..+.+.+...+.. .|.. +.-|. ...+.. +.+|+ ...+|+|+.- |.
T Consensus 280 ~D~i~~~Gg~paNflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~ 359 (395)
T 2fp4_B 280 CDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 359 (395)
T ss_dssp HHHHHHTTCCBCEEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEET
T ss_pred HHHHHHcCCCcCCcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCC
Confidence 355677776554 4667777776665444332 3433 32221 111222 23333 2689998763 43
Q ss_pred chhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccC
Q psy15363 92 TLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 92 ~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
+. ..+..+|+..|++-+.++|.++=++++++++++
T Consensus 360 n~--~~g~~~L~~~gl~~~~~~~~~~Aa~~~v~~~~~ 394 (395)
T 2fp4_B 360 NV--HEAQNILTNSGLPITSAVDLEDAAKKAVASVTK 394 (395)
T ss_dssp TH--HHHHHHHHHTCSCCEECSSHHHHHHHHHHTTC-
T ss_pred CH--HHHHHHHHHCCCceEeCCCHHHHHHHHHHHhhc
Confidence 32 236678888899888889999999999999875
No 150
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=72.27 E-value=19 Score=27.95 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=51.7
Q ss_pred HHHHhhCCC-cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHH------------------HHHh--hccccE
Q psy15363 4 IFVLKAVPN-SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEE------------------HVRR--GQLADV 62 (130)
Q Consensus 4 ~~il~~~P~-a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~------------------~~~~--~~~~Dv 62 (130)
.+++++.|+ .+++-+.. +...+.+++.+++++. +.+.....-...+ +..+ .. +|+
T Consensus 21 l~vi~~~p~~~~v~al~a-g~ni~~l~~~~~~f~~--~~v~v~d~~~~~~l~~~l~~~~~~v~~g~~~~~el~~~~-iDv 96 (388)
T 1r0k_A 21 LDLIERNLDRYQVIALTA-NRNVKDLADAAKRTNA--KRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMG-ADW 96 (388)
T ss_dssp HHHHHHTGGGEEEEEEEE-SSCHHHHHHHHHHTTC--SEEEESCGGGHHHHHHHTTTCSSEEEESHHHHHHHHTSC-CSE
T ss_pred HHHHHhCcCcEEEEEEEc-CCCHHHHHHHHHHcCC--cEEEEcChHHHHHHHHHhccCCcEEEeCccHHHHHHcCC-CCE
Confidence 456778887 77664422 2445678888888875 3444433211111 1112 23 799
Q ss_pred EEcCCC-CCCchHHHHHHhcCCcEEecCCC
Q psy15363 63 CLDTPL-CNGHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 63 ~l~~~~-~~~g~~~lEAla~G~PvV~~~g~ 91 (130)
++...+ ..|-..+++|+.+|+.|++-+.+
T Consensus 97 VV~ai~G~aGl~ptlaAi~aGK~VvlANKE 126 (388)
T 1r0k_A 97 TMAAIIGCAGLKATLAAIRKGKTVALANKE 126 (388)
T ss_dssp EEECCCSGGGHHHHHHHHHTTSEEEECCSH
T ss_pred EEEeCCCHHHHHHHHHHHHCCCEEEEeCcH
Confidence 988764 33445679999999999997554
No 151
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=72.24 E-value=3.6 Score=30.77 Aligned_cols=38 Identities=5% Similarity=-0.242 Sum_probs=25.9
Q ss_pred HHHHhhccccEEEcCC-CCCCchHHHHHHhcCCcEEecC
Q psy15363 52 EHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 52 ~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G~PvV~~~ 89 (130)
++..++..+|+.+|-. |...--.+..++..|+|+|+..
T Consensus 81 dl~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGT 119 (288)
T 3ijp_A 81 DPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGT 119 (288)
T ss_dssp CHHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECC
T ss_pred CHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3445567899999754 4333334567899999999853
No 152
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=71.81 E-value=20 Score=24.19 Aligned_cols=105 Identities=10% Similarity=-0.001 Sum_probs=62.7
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEEcCCCCCCchHHHHHHhc---CCcEEec
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCLDTPLCNGHTTSMDVLWT---GTPVVTL 88 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l~~~~~~~g~~~lEAla~---G~PvV~~ 88 (130)
+++++.+.......++..+++.|. +|... .+.++....+. ..|+.+ .|...|..+++.+.. .+|||.+
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~l~~~~~dlvi--lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGF---MADVT--ESLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTC---CEEEE--SSHHHHHHHHTTSCCSEEE--ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCc---EEEEE--CCHHHHHHHHhcCCCCEEE--eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 356676543346677888877665 35432 23455545443 479999 666667777766643 7899887
Q ss_pred CCCchhhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhcc
Q psy15363 89 PGETLASRVAASQLATLGCPELIAR---THKEYQDIAIRLGT 127 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~~ 127 (130)
.+..-...... .-..|..+++.. +.+++.+...++.+
T Consensus 75 t~~~~~~~~~~--~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~ 114 (223)
T 2hqr_A 75 SDNPTSEEEVH--AFEQGADDYIAKPYRSIKALVARIEARLR 114 (223)
T ss_dssp ESSCCHHHHHH--HHHHTCSEEEETTCSCTHHHHHHHHHHTS
T ss_pred ECCCCHHHHHH--HHHcCCCEEEECCCCCHHHHHHHHHHHhc
Confidence 65433222222 123488886653 66777777666544
No 153
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=71.07 E-value=16 Score=22.56 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=63.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEE-EcCC-CC--CCchHHHHHHh---cC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVC-LDTP-LC--NGHTTSMDVLW---TG 82 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~-l~~~-~~--~~g~~~lEAla---~G 82 (130)
..+++++.+.......+++.+++.|. +|... .+.++....+.. .|++ +|.. |. ..|..+++.+. ..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~ 80 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDV---TIQCF--ASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFH 80 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSS---EEEEE--SSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCc---EEEEe--CCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCC
Confidence 35777887643446677777777664 34432 244555555543 6777 4543 45 45666666655 37
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
+|+|...+..-...... ....|..+++.. +.+++.+...++.+
T Consensus 81 ~~ii~~s~~~~~~~~~~--~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 125 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVR--AMRASAADFIEKPFIEHVLVHDVQQIIN 125 (136)
T ss_dssp CCEEEEESSCCHHHHHH--HHHTTCSEEEESSBCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHH--HHHcChHHheeCCCCHHHHHHHHHHHHh
Confidence 89988766433222221 224588887653 77788777766543
No 154
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=70.58 E-value=10 Score=26.19 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----c-EEEcCCCCC-CchHHHHHH-hcCCcEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVL-WTGTPVVTL 88 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----D-v~l~~~~~~-~g~~~lEAl-a~G~PvV~~ 88 (130)
+.+++.+.++|+ .+.|.-.=...++..+++.+ | |.++|--|+ .+..+.+|+ +.++|+|=.
T Consensus 60 ~~l~~~a~~~G~---~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VEV 126 (172)
T 3n8k_A 60 ALIEREAAELGL---KAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEV 126 (172)
T ss_dssp HHHHHHHHHTTC---EEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHcCC---EEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHhCCCCEEEE
Confidence 456677778886 46776665566777776653 4 558887776 478899998 567999844
No 155
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=70.47 E-value=15 Score=22.22 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=66.0
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh-----cCCc
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW-----TGTP 84 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla-----~G~P 84 (130)
+++++.+....+..++..+++.|. +|... .+.++....+. ..|+. +|. .|...|..+++.+. ..+|
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~---~v~~~--~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~p 78 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGY---EVIEA--ENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIP 78 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC---EEEEE--SSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCc---EEEEe--CCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCC
Confidence 567777643456778888888775 34432 34455545553 36887 454 36666888888874 4689
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
||...+..-.... .-....|..+++.. +.+++.+...++++
T Consensus 79 ii~~s~~~~~~~~--~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 79 VIVLTAKGGEEDE--SLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEEESCCSHHHH--HHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEEecCCchHHH--HHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 9887654322221 12234688887763 77888887776654
No 156
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=70.46 E-value=13 Score=21.62 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=60.3
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcCC-CCCCchHHHHHHh-----cCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDTP-LCNGHTTSMDVLW-----TGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~~-~~~~g~~~lEAla-----~G~ 83 (130)
.+++++.+.....+.+++.+++.|. +|.... +.++....+. ..|+. +|.. +...|..+++.+. ..+
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~---~v~~~~--~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~ 76 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGF---KVIWLV--DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHP 76 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTC---EEEEES--CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCc---EEEEec--CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCC
Confidence 3567777543456778888888775 454433 3344444333 36777 4543 4445777788775 568
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
|+|.+.+..... -....|..+++.. +.+++.+...++.
T Consensus 77 ~ii~~~~~~~~~-----~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 77 PLVLFLGEPPVD-----PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CCEEEESSCCSS-----HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred CEEEEeCCCCch-----hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 988775432222 1223467776553 5666666665544
No 157
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=69.94 E-value=18 Score=22.73 Aligned_cols=111 Identities=8% Similarity=0.014 Sum_probs=65.1
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHhc---CCcE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLWT---GTPV 85 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla~---G~Pv 85 (130)
.+++++.+.....+.+++.+++.|-. ..|... -+.++....+. ..|+++ |. .+...|..+++.+.. .+|+
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~--~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 97 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDV-ESVLQA--KNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKV 97 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEE--SSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEE--CCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeE
Confidence 56778876434466777777766521 233333 33455555553 378884 43 245567777776654 6888
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccC
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTD 128 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d 128 (130)
|.+.+..-...... ....|..+++.. +.+++.+...++++.
T Consensus 98 i~ls~~~~~~~~~~--~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 98 VVVTTFKRAGYFER--AVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp EEEESCCCHHHHHH--HHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred EEEeCCCCHHHHHH--HHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 88765433222221 224588887663 678888777766553
No 158
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=69.72 E-value=1.4 Score=33.22 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=45.1
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEec-CCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g-~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.+++++|.....+..+++.+++.|...-.=+|+| .++.... ..++.=|+.+-+-|..-...+.||...|+|||++
T Consensus 72 ~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t-~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIal 147 (295)
T 2zkq_b 72 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ-AAFREPRLLVVTDPRADHQPLTEASYVNLPTIAL 147 (295)
T ss_dssp GGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTC-SSCCCCSEEEESCTTTTHHHHHHHHHHTCCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCccc-ccccCCCeEEEeCCCcchhHHHHHHHhCCCEEEE
Confidence 5566778644445667777777664211112333 2332111 2345677775444555578999999999999987
No 159
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=69.53 E-value=17 Score=22.69 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=35.8
Q ss_pred CCCcEEEEeecCccc-----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC
Q psy15363 10 VPNSILWLLKFPAVG-----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC 69 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~-----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~ 69 (130)
.+--+++++++.|-. ..++++.++++|++ + +. ....+..++...+..+|+++.+.+.
T Consensus 16 ~~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~-~-~~-i~~~~~~~~~~~~~~~DlIi~t~~l 77 (110)
T 3czc_A 16 GSMVKVLTACGNGMGSSMVIKMKVENALRQLGVS-D-IE-SASCSVGEAKGLASNYDIVVASNHL 77 (110)
T ss_dssp --CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCC-C-EE-EEEECHHHHHHHGGGCSEEEEETTT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCC-e-EE-EEEeeHHHHhhccCCCcEEEECCch
Confidence 333456677755532 45788899999985 3 22 3344545565556789999977654
No 160
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=69.52 E-value=3.5 Score=30.42 Aligned_cols=37 Identities=16% Similarity=-0.070 Sum_probs=25.5
Q ss_pred HHHhhccccEEEcCC-CCCCchHHHHHHhcCCcEEecC
Q psy15363 53 HVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 53 ~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G~PvV~~~ 89 (130)
+..++..+|+.+|.. |...-..+..++..|+|+|+..
T Consensus 67 l~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigT 104 (272)
T 4f3y_A 67 IERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGT 104 (272)
T ss_dssp HHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 344456899999844 4433344677899999999854
No 161
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=69.30 E-value=5 Score=27.19 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=38.5
Q ss_pred HHhhccccEEEcCCCCCCchH---HHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCC-----ceecCHHHHHHHHHHh
Q psy15363 54 VRRGQLADVCLDTPLCNGHTT---SMDVLWTGTPVVTLPGETLASRVAASQLATLGCPE-----LIARTHKEYQDIAIRL 125 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~~~~~g~~---~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~-----~va~~~~~y~~~a~~l 125 (130)
..+++.||+++--+......| +-=|.+.|+|||++..+.....+. .|+. |... .+.-|.++..++..++
T Consensus 72 ~~~i~~aD~vva~~~~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n-~M~~--g~~~~~~~~~~~y~~~el~~~l~~~ 148 (165)
T 2khz_A 72 LNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLS-AMIR--GAADGSRFQVWDYAEGEVETMLDRY 148 (165)
T ss_dssp HHHHHHCSEEEEECSSCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCC-HHHH--HTCCSSSEEEEECCTTTHHHHHHHH
T ss_pred HHHHHhCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcch-hhhc--ccCccceeEEEecCHHHHHHHHHHH
Confidence 478899999964332323333 444789999999985443211222 2232 3322 2222666666665554
Q ss_pred cc
Q psy15363 126 GT 127 (130)
Q Consensus 126 ~~ 127 (130)
+.
T Consensus 149 ~~ 150 (165)
T 2khz_A 149 FE 150 (165)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 162
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=69.09 E-value=16 Score=21.79 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=66.3
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CC-CCCchHHHHHHh-----cC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PL-CNGHTTSMDVLW-----TG 82 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~-~~~g~~~lEAla-----~G 82 (130)
.+++++.+.......+++.+++.|. +|.... +.++....+. ..|+. +|. .+ ...|..+++.+. ..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGF---TVDETT--DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKN 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTC---EEEEEC--CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc---eEEEec--CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccC
Confidence 3677777643456778888888775 344332 3344444433 36887 454 34 445777777774 46
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccCCC
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTDRD 130 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d~e 130 (130)
+|+|.. +..-..... -....|..+++.. +.+++.+...++.+.+|
T Consensus 81 ~~ii~~-~~~~~~~~~--~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 127 (127)
T 2gkg_A 81 VPIVII-GNPDGFAQH--RKLKAHADEYVAKPVDADQLVERAGALIGFPE 127 (127)
T ss_dssp SCEEEE-ECGGGHHHH--HHSTTCCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred CCEEEE-ecCCchhHH--HHHHhCcchheeCCCCHHHHHHHHHHHHcCCC
Confidence 899988 543322221 1234577776653 77888888877776554
No 163
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=68.92 E-value=23 Score=25.78 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHh-cCCcEEecCCCc--hh-hhhHHH
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLW-TGTPVVTLPGET--LA-SRVAAS 100 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla-~G~PvV~~~g~~--~~-~r~~~~ 100 (130)
..+++.+++.|+. .+.-..+......+...+|++ +.++... -..++++++ .|+||+...|.. .. -..+..
T Consensus 77 ~~l~~~~~~~Gl~----~~te~~d~~~~~~l~~~vd~~kIga~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~ 151 (262)
T 1zco_A 77 RWMREAADEYGLV----TVTEVMDTRHVELVAKYSDILQIGARNSQ-NFELLKEVGKVENPVLLKRGMGNTIQELLYSAE 151 (262)
T ss_dssp HHHHHHHHHHTCE----EEEECCCGGGHHHHHHHCSEEEECGGGTT-CHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCc----EEEeeCCHHhHHHHHhhCCEEEECccccc-CHHHHHHHHhcCCcEEEecCCCCCHHHHHHHHH
Confidence 3556666777764 333333332222222237777 4333332 244555555 799999998864 22 223455
Q ss_pred HHHhcCCCC
Q psy15363 101 QLATLGCPE 109 (130)
Q Consensus 101 ~l~~~g~~~ 109 (130)
.+...|.++
T Consensus 152 ~i~~~Gn~~ 160 (262)
T 1zco_A 152 YIMAQGNEN 160 (262)
T ss_dssp HHHTTTCCC
T ss_pred HHHHCCCCe
Confidence 666667765
No 164
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=68.91 E-value=17 Score=22.28 Aligned_cols=111 Identities=7% Similarity=-0.003 Sum_probs=66.3
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cCC-CCCCchHHHHHHhc-----
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DTP-LCNGHTTSMDVLWT----- 81 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~~-~~~~g~~~lEAla~----- 81 (130)
+..+++++.+.......+++.+++.|.. |.... +.++....+. ..|+++ |.. +...|..+++.+..
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~---v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 79 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFD---SDMVH--SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTR 79 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCE---EEEEC--SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCe---EEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccC
Confidence 3467888876444567888888887752 44433 3344444443 368884 543 55568888887764
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
.+|+|...+..-..... ......|..+++.. +.+++.....++++
T Consensus 80 ~~~ii~~s~~~~~~~~~-~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 80 DLAIVVVSANAREGELE-FNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp TCEEEEECTTHHHHHHH-HCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCChHHHH-HHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 78999887653221111 01223477776653 67777777665543
No 165
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=68.75 E-value=16 Score=21.94 Aligned_cols=108 Identities=9% Similarity=0.086 Sum_probs=62.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcCC-CCCCchHHHHHHhc-----C
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDTP-LCNGHTTSMDVLWT-----G 82 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~~-~~~~g~~~lEAla~-----G 82 (130)
+.+++++.+....+..+++.+++.|.. .|..... ..+....+. ..|++ +|.. |...|..+++.+.. .
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~--~v~~~~~--~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~ 79 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAED--GVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSA 79 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESS--HHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTT
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCc--EEEeeCC--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCC
Confidence 456777876433466788888887752 4444332 344444443 36887 4543 55567888888764 5
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
+|+|...+..-..... . ....|..+++.. +.+++.+...++
T Consensus 80 ~~ii~~s~~~~~~~~~-~-~~~~ga~~~l~KP~~~~~l~~~i~~~ 122 (128)
T 1jbe_A 80 LPVLMVTAEAKKENII-A-AAQAGASGYVVKPFTAATLEEKLNKI 122 (128)
T ss_dssp CCEEEEESSCCHHHHH-H-HHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred CcEEEEecCccHHHHH-H-HHHhCcCceeecCCCHHHHHHHHHHH
Confidence 7888775543322222 1 224588776653 667776665544
No 166
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=68.49 E-value=15 Score=26.05 Aligned_cols=108 Identities=10% Similarity=0.050 Sum_probs=65.7
Q ss_pred hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC----HHHHHHhh--ccccEEEcCCCCCCchHHHHH----
Q psy15363 9 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA----KEEHVRRG--QLADVCLDTPLCNGHTTSMDV---- 78 (130)
Q Consensus 9 ~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~----~~~~~~~~--~~~Dv~l~~~~~~~g~~~lEA---- 78 (130)
..++-++++..+ ...++.|.+.+++.|..-+.+..--..+ .+++...+ ...|+.+.+|+.+-- ..++.
T Consensus 130 ~~~~~~vL~~rg-~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~ 207 (254)
T 4es6_A 130 RVHDPKVLIMRG-EGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQ-NLYQLAAAD 207 (254)
T ss_dssp CSSSCEEEEEEC-SSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHH-HHHHHHGGG
T ss_pred cCCCCEEEEEcC-CccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHH-HHHHHhhHH
Confidence 456666666653 3456778888899997655555543332 23444444 357999877764311 11222
Q ss_pred --HhcCCcEEecCCCchhhhhHHHHHHhcCCCCce-e--cCHHHHHHHHHH
Q psy15363 79 --LWTGTPVVTLPGETLASRVAASQLATLGCPELI-A--RTHKEYQDIAIR 124 (130)
Q Consensus 79 --la~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~v-a--~~~~~y~~~a~~ 124 (130)
...++++++.. ..++..++..|+...+ + .+.+++++...+
T Consensus 208 ~~~l~~~~~~aIG------~~Ta~~l~~~G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 208 WPEIGRLPLFVPS------PRVAEMARELGAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp HHHHTTSCEEESS------HHHHHHHHHTTCSSEEECSSSSHHHHHHHHHH
T ss_pred HHHHhCCeEEEEC------HHHHHHHHHcCCCceEECCCCCHHHHHHHHHh
Confidence 23468888753 4577788888998754 4 467777776554
No 167
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=68.15 E-value=26 Score=26.81 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh-cCCcEEecCCCch---hhhhHHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETL---ASRVAAS 100 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla-~G~PvV~~~g~~~---~~r~~~~ 100 (130)
...+++.+++.|+. ++.-..+......+-..+|++==++....-..++++++ .|+||+...|-.. .-.....
T Consensus 159 l~~l~~~~~e~Gl~----~~te~~d~~~~~~l~~~vd~lkIgAr~~~n~~LL~~va~~~kPVilk~G~~~tl~ei~~Ave 234 (350)
T 1vr6_A 159 LEYLREAADKYGMY----VVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAE 234 (350)
T ss_dssp HHHHHHHHHHHTCE----EEEECSSGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc----EEEEeCCHHHHHHHHHhCCEEEECcccccCHHHHHHHHccCCcEEEcCCCCCCHHHHHHHHH
Confidence 34566677777775 33333443322222233777732333222344555554 7999999988651 2223455
Q ss_pred HHHhcCCCC
Q psy15363 101 QLATLGCPE 109 (130)
Q Consensus 101 ~l~~~g~~~ 109 (130)
.+...|.++
T Consensus 235 ~i~~~GN~~ 243 (350)
T 1vr6_A 235 YIANSGNTK 243 (350)
T ss_dssp HHHHTTCCC
T ss_pred HHHHCCCCe
Confidence 566667765
No 168
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=67.84 E-value=11 Score=25.53 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc----cc-EEEcCCCCC-CchHHHHHH-hcCCcEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL----AD-VCLDTPLCN-GHTTSMDVL-WTGTPVVTL 88 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~----~D-v~l~~~~~~-~g~~~lEAl-a~G~PvV~~ 88 (130)
+.+++.+.++|+ .+.|.-.=...++..+++. +| |.++|--|+ .+..+.+|+ +.++|+|=.
T Consensus 39 ~~l~~~a~~~g~---~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VEV 105 (153)
T 3lwz_A 39 SQLEIQAQGMDV---ALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDALLGVQIPFIEI 105 (153)
T ss_dssp HHHHHHHHHTTE---EEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCC---EEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHHHHHHHhcCCCEEEE
Confidence 456667777776 3666665556677776655 35 447887776 478899988 568999854
No 169
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=67.62 E-value=34 Score=25.18 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHh-cCCcEEecCCCc--h-hhhhHHH
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLW-TGTPVVTLPGET--L-ASRVAAS 100 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla-~G~PvV~~~g~~--~-~~r~~~~ 100 (130)
+.+++.+++.|+. +++-..+......+-..+|++ +-++-. .-+.++++++ .|+||+..+|.. . .-.....
T Consensus 76 ~~l~~~~~~~Gl~----~~te~~d~~~~~~l~~~~d~~kIga~~~-~n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~A~~ 150 (280)
T 2qkf_A 76 KIFEKVKAEFGIP----VITDVHEPHQCQPVAEVCDVIQLPAFLA-RQTDLVVAMAKTGNVVNIKKPQFLSPSQMKNIVE 150 (280)
T ss_dssp HHHHHHHHHHCCC----EEEECCSGGGHHHHHHHCSEEEECGGGT-TBHHHHHHHHHTCCEEEEECCTTSCGGGHHHHHH
T ss_pred HHHHHHHHHcCCc----EEEecCCHHHHHHHHhhCCEEEECcccc-cCHHHHHHHHcCCCcEEEECCCCCCHHHHHHHHH
Confidence 4566777888886 444444433222222337888 433322 2233565554 799999998853 2 2333566
Q ss_pred HHHhcCCCC
Q psy15363 101 QLATLGCPE 109 (130)
Q Consensus 101 ~l~~~g~~~ 109 (130)
.+...|.++
T Consensus 151 ~i~~~Gn~~ 159 (280)
T 2qkf_A 151 KFHEAGNGK 159 (280)
T ss_dssp HHHHTTCCC
T ss_pred HHHHcCCCe
Confidence 677778765
No 170
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=67.57 E-value=34 Score=25.39 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHh-cCCcEEecCCCc--h-hhhhHHH
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLW-TGTPVVTLPGET--L-ASRVAAS 100 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla-~G~PvV~~~g~~--~-~~r~~~~ 100 (130)
+.+++.+++.|+. +++-..+......+-..+|++ +-++-.. -+.++++++ .|+||+..+|.. . .-...+.
T Consensus 79 ~~l~~~~~~~Glp----~~te~~d~~~~~~l~~~vd~~kIgA~~~~-n~~Ll~~~a~~~kPV~lk~G~~~t~~ei~~Av~ 153 (292)
T 1o60_A 79 KIFQELKDTFGVK----IITDVHEIYQCQPVADVVDIIQLPAFLAR-QTDLVEAMAKTGAVINVKKPQFLSPSQMGNIVE 153 (292)
T ss_dssp HHHHHHHHHHCCE----EEEECCSGGGHHHHHTTCSEEEECGGGTT-CHHHHHHHHHTTCEEEEECCTTSCGGGHHHHHH
T ss_pred HHHHHHHHHcCCc----EEEecCCHHHHHHHHhcCCEEEECccccc-CHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 4566777788875 444444433332222357877 4333222 233555554 799999998853 2 2333566
Q ss_pred HHHhcCCCC
Q psy15363 101 QLATLGCPE 109 (130)
Q Consensus 101 ~l~~~g~~~ 109 (130)
.+...|.++
T Consensus 154 ~i~~~Gn~~ 162 (292)
T 1o60_A 154 KIEECGNDK 162 (292)
T ss_dssp HHHHTTCCC
T ss_pred HHHHcCCCe
Confidence 677778776
No 171
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=66.86 E-value=19 Score=22.00 Aligned_cols=111 Identities=10% Similarity=0.062 Sum_probs=64.7
Q ss_pred CCcEEEEeecCcccHHHHHHHHHH-cCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcCC-CCCCchHHHHHHhc----
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDTP-LCNGHTTSMDVLWT---- 81 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~-~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~~-~~~~g~~~lEAla~---- 81 (130)
...+++++.+.......+++.+++ .|.. .|...... ++....++ ..|+. +|.. +...|..+++.+..
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~--~v~~~~~~--~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~ 82 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYA--KIKIAYNP--FDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPAT 82 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTC--EEEEECSH--HHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCcc--EEEEECCH--HHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccc
Confidence 346777887644456778888887 6752 25444332 44444333 37888 4543 44567777777754
Q ss_pred -CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 82 -GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 82 -G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
.+|+|.+.+..-..... -....|..+++.. +.+++.+...++.+
T Consensus 83 ~~~~ii~~s~~~~~~~~~--~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 83 ANIIVIAMTGALTDDNVS--RIVALGAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp TTSEEEEEESSCCHHHHH--HHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCHHHHH--HHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 68888775543322221 1224588887653 67777776666543
No 172
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=66.81 E-value=6.1 Score=29.31 Aligned_cols=52 Identities=8% Similarity=0.084 Sum_probs=35.5
Q ss_pred ChHHHHHhhC-CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcccc
Q psy15363 1 MSDIFVLKAV-PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD 61 (130)
Q Consensus 1 ~~w~~il~~~-P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~D 61 (130)
+.|.+|.++. |++.++++|+ |.++ ++.+++++.+ |..=-.+.++.+++.+-|
T Consensus 218 sCFerI~~RFG~k~~yvvIGD-G~eE---e~AAk~~n~P-----FwrI~~h~Dl~~l~~al~ 270 (274)
T 3geb_A 218 SCFERIMQRFGRKAVYVVIGD-GVEE---EQGAKKHNMP-----FWRISCHADLEALRHALE 270 (274)
T ss_dssp HHHHHHHHHHCTTSEEEEEES-SHHH---HHHHHHTTCC-----EEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEEECC-CHHH---HHHHHHcCCC-----eEEeecCccHHHHHHhhc
Confidence 3688899888 8999999997 4443 3456777765 555455667766665433
No 173
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=66.61 E-value=3.1 Score=30.16 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=68.3
Q ss_pred hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC----HHHHHHhh--ccccEEEcCCCCCC-c-hHHHH---
Q psy15363 9 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA----KEEHVRRG--QLADVCLDTPLCNG-H-TTSMD--- 77 (130)
Q Consensus 9 ~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~----~~~~~~~~--~~~Dv~l~~~~~~~-g-~~~lE--- 77 (130)
..++-++++..+ ...++.|.+.+++.|..-+.+..--..+ .+++...+ ...|+.+.+|+.+- . ...+.
T Consensus 138 ~~~g~~vLi~rg-~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~ 216 (269)
T 3re1_A 138 AVPGSRVLIMRG-NEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFEHLLQLAGDSW 216 (269)
T ss_dssp CSSSCEEEEEEC-SSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHTTTHHHHGGGH
T ss_pred cCCCCEEEEEcc-CccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 456667666653 3456778888999997655555443332 22233333 35799998886431 1 11111
Q ss_pred HHhcCCcEEecCCCchhhhhHHHHHHhcCCCCce-e--cCHHHHHHHHHHhcc
Q psy15363 78 VLWTGTPVVTLPGETLASRVAASQLATLGCPELI-A--RTHKEYQDIAIRLGT 127 (130)
Q Consensus 78 Ala~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~v-a--~~~~~y~~~a~~l~~ 127 (130)
....++++++.. ..++..++..|+...+ + .+.+++++...+.+.
T Consensus 217 ~~l~~~~~~aIG------~~Ta~~l~~~G~~~~~va~~~t~~~l~~al~~~~~ 263 (269)
T 3re1_A 217 PDLAGLPLFVPS------PRVASLAQAAGARNVIDCRGASAAALLAALRDQPQ 263 (269)
T ss_dssp HHHTTSCEEESS------HHHHHHHHHHTCSSEEECSSSSHHHHHHHHHHSCC
T ss_pred HHHhCCeEEEEC------HHHHHHHHHCCCCceEECCCCCHHHHHHHHHHHhc
Confidence 123578888753 3467777888998744 4 578888888777654
No 174
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=64.90 E-value=22 Score=26.70 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC-CCCCchHHHHHHhcCCcEEecC
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G~PvV~~~ 89 (130)
.++.++.++++|+. ++ +.+.+++++- ...|+++-.. +....-.+.+|+..|++|++-+
T Consensus 56 ~~~a~~~a~~~~~~--~~----~~~~~~ll~~-~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 114 (383)
T 3oqb_A 56 AEKVEALAKRFNIA--RW----TTDLDAALAD-KNDTMFFDAATTQARPGLLTQAINAGKHVYCEK 114 (383)
T ss_dssp SHHHHHHHHHTTCC--CE----ESCHHHHHHC-SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECS
T ss_pred HHHHHHHHHHhCCC--cc----cCCHHHHhcC-CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcC
Confidence 45667788888874 22 1345565442 2488875544 4455667899999999999864
No 175
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=64.78 E-value=11 Score=27.46 Aligned_cols=110 Identities=10% Similarity=-0.064 Sum_probs=64.9
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC---H-HHHHHhh---ccccEEEcCCCCCCc--hHHHHH---
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---K-EEHVRRG---QLADVCLDTPLCNGH--TTSMDV--- 78 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~---~-~~~~~~~---~~~Dv~l~~~~~~~g--~~~lEA--- 78 (130)
++-++++..+ ...++.|.+.+++.|..-..+...-..+ . +++...+ ...|+.+.+|+.+-- ...+..
T Consensus 156 ~g~~vLi~rg-~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~~ 234 (286)
T 1jr2_A 156 SALPLLFPCG-NLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSG 234 (286)
T ss_dssp CSSCEEEEES-CGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCCeEEEECC-hhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhcc
Confidence 4445555543 2456678888999998655555433332 1 2344444 357999988875311 112221
Q ss_pred -HhcCCcEEecCCCchhhhhHHHHHHhcCCCCc-ee--cCHHHHHHHHHHhcc
Q psy15363 79 -LWTGTPVVTLPGETLASRVAASQLATLGCPEL-IA--RTHKEYQDIAIRLGT 127 (130)
Q Consensus 79 -la~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~-va--~~~~~y~~~a~~l~~ 127 (130)
...++++++.. ..++..++..|+... ++ .+.+++++...+..+
T Consensus 235 ~~l~~~~i~aIG------~~Ta~~l~~~G~~~~~va~~~~~~~ll~al~~~~~ 281 (286)
T 1jr2_A 235 DNIDQIKFAAIG------PTTARALAAQGLPVSCTAESPTPQALATGIRKALQ 281 (286)
T ss_dssp GGGGGSEEEESS------HHHHHHHHHTTCCCSEECSSSSHHHHHHHHHHHTC
T ss_pred ccccCCEEEEEC------HHHHHHHHHcCCCceEecCCCCHHHHHHHHHHHHh
Confidence 12456777643 456778888898754 44 478888887776554
No 176
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=64.67 E-value=11 Score=24.63 Aligned_cols=63 Identities=10% Similarity=0.190 Sum_probs=41.4
Q ss_pred HHHHHhhCC-CcEEEEeecCc---c----c---------H-HHHHHHHHHcCCCCCCEEEecCCCH--------HHHHHh
Q psy15363 3 DIFVLKAVP-NSILWLLKFPA---V----G---------E-ANIQATAQALGLDQHRILFSNVAAK--------EEHVRR 56 (130)
Q Consensus 3 w~~il~~~P-~a~l~i~g~~~---~----~---------~-~~l~~~~~~~g~~~~rv~f~g~~~~--------~~~~~~ 56 (130)
++.+++..| +.++.|.|+.. . . + ..+++++.+.|++++|+...|+-.. ++-...
T Consensus 26 ia~~l~~~p~~~~i~I~GhtD~~g~~~~~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G~~~P~~~n~t~~~~~~ 105 (138)
T 3cyp_B 26 IAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSYGSTNPIAPNDSLENRMK 105 (138)
T ss_dssp HHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECTTCSCSSCTTSHHHHHH
T ss_pred HHHHHHhCCCCcEEEEEEecCCCCcccccchhHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEECccCCCCCCcCHHHHhc
Confidence 567889999 99999999531 1 1 1 1466777777999889988876421 123334
Q ss_pred hccccEEEc
Q psy15363 57 GQLADVCLD 65 (130)
Q Consensus 57 ~~~~Dv~l~ 65 (130)
=+.++|.+.
T Consensus 106 NRRVei~i~ 114 (138)
T 3cyp_B 106 NNRVEIFFS 114 (138)
T ss_dssp HSEEEEEEE
T ss_pred CCCEEEEEe
Confidence 456666653
No 177
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=64.57 E-value=11 Score=28.03 Aligned_cols=77 Identities=6% Similarity=-0.055 Sum_probs=47.5
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTG 82 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G 82 (130)
.+.+++.|+.+++-+.+. . ..+++++++++. .+.... +.++++.- ..+|+++-+.|. ...-.+..|+..|
T Consensus 19 ~~~l~~~~~~~l~av~d~-~---~~~~~a~~~~~~--~~~~~~--~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~aG 89 (349)
T 3i23_A 19 LPYVMIRETLEVKTIFDL-H---VNEKAAAPFKEK--GVNFTA--DLNELLTD-PEIELITICTPAHTHYDLAKQAILAG 89 (349)
T ss_dssp HHHHTTCTTEEEEEEECT-T---CCHHHHHHHHTT--TCEEES--CTHHHHSC-TTCCEEEECSCGGGHHHHHHHHHHTT
T ss_pred HHHHhhCCCeEEEEEECC-C---HHHHHHHhhCCC--CCeEEC--CHHHHhcC-CCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence 455677899998877753 2 234555665543 222222 33555431 248988665554 3456688999999
Q ss_pred CcEEecC
Q psy15363 83 TPVVTLP 89 (130)
Q Consensus 83 ~PvV~~~ 89 (130)
++|++-+
T Consensus 90 k~Vl~EK 96 (349)
T 3i23_A 90 KSVIVEK 96 (349)
T ss_dssp CEEEECS
T ss_pred CEEEEEC
Confidence 9999853
No 178
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=64.50 E-value=24 Score=22.27 Aligned_cols=109 Identities=15% Similarity=0.075 Sum_probs=66.5
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEE-EcC-CCCCCchHHHHHHh-----cC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVC-LDT-PLCNGHTTSMDVLW-----TG 82 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~-l~~-~~~~~g~~~lEAla-----~G 82 (130)
..+++++.+.......+++.+++.|. +|... .+.++....+.. .|++ +|. .|...|..+++.+. ..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGY---QTEHV--RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRT 81 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC---EEEEE--SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCC---EEEEe--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCC
Confidence 46778887644456778888888775 34333 344555555543 6877 554 35556888887775 46
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
+|+|.+.+..-...... ....|..+++.. +.+++.....++++
T Consensus 82 ~pii~~s~~~~~~~~~~--~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 82 IPVILLTILSDPRDVVR--SLECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp SCEEEEECCCSHHHHHH--HHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHH--HHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 89988765433222221 223588887653 67777776665543
No 179
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=64.48 E-value=17 Score=27.85 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=46.0
Q ss_pred HHHHhhCC-CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEE-cCCCCC-C---chHHHH
Q psy15363 4 IFVLKAVP-NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCL-DTPLCN-G---HTTSMD 77 (130)
Q Consensus 4 ~~il~~~P-~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l-~~~~~~-~---g~~~lE 77 (130)
.+.+.+.| +..|+-+.+ ...++.+++++++|+. .| .+.+++ +...|+.. .+.... + --.+..
T Consensus 22 ~~a~~~~~~~~elvav~~--~~~~~a~~~a~~~gv~----~~---~~~~~l---~~~~D~v~i~~p~~~h~~~~~~~a~~ 89 (372)
T 4gmf_A 22 LNAFMQPPEGLELVGLLA--QGSARSRELAHAFGIP----LY---TSPEQI---TGMPDIACIVVRSTVAGGAGTQLARH 89 (372)
T ss_dssp HHTTSSCCTTEEEEEEEC--CSSHHHHHHHHHTTCC----EE---SSGGGC---CSCCSEEEECCC--CTTSHHHHHHHH
T ss_pred HHHHHhCCCCeEEEEEEC--CCHHHHHHHHHHhCCC----EE---CCHHHH---hcCCCEEEEECCCcccchhHHHHHHH
Confidence 34455666 477776664 3345678888999883 23 233443 45678774 333222 2 235789
Q ss_pred HHhcCCcEEecCC
Q psy15363 78 VLWTGTPVVTLPG 90 (130)
Q Consensus 78 Ala~G~PvV~~~g 90 (130)
||..|++|++-+-
T Consensus 90 al~aGkhVl~EKP 102 (372)
T 4gmf_A 90 FLARGVHVIQEHP 102 (372)
T ss_dssp HHHTTCEEEEESC
T ss_pred HHHcCCcEEEecC
Confidence 9999999999754
No 180
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=64.17 E-value=7.9 Score=27.04 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=29.6
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHH
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEH 53 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~ 53 (130)
++..+++.| +....+.+++.++++|++.++|++-.+-+...+
T Consensus 200 ~~~~vyvCG-p~~m~~~v~~~l~~~g~~~~~i~~E~F~~~~~~ 241 (243)
T 4eh1_A 200 EDGDFYLCG-PIGFMQYVVKQLLALGVDKARIHYEVFGPHAQL 241 (243)
T ss_dssp TTCEEEEEE-CHHHHHHHHHHHHHHTCCGGGEEEEECCC----
T ss_pred CCcEEEEEC-CHHHHHHHHHHHHHcCCCHHHEEEeccCCchhc
Confidence 456777777 445667788888999998889998887765543
No 181
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=63.63 E-value=14 Score=25.02 Aligned_cols=46 Identities=9% Similarity=-0.046 Sum_probs=33.6
Q ss_pred HHHHHhhCCCcEEEEeecCcc---c---------H-HHHHHHHHHcCCCCCCEEEecCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAV---G---------E-ANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~---~---------~-~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
++.+++..|+..+.|.|.... . + ..+++++.+.|++++|+...|+-
T Consensus 37 la~~L~~~~~~~I~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~G~G 95 (164)
T 1r1m_A 37 LAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRISAVGLG 95 (164)
T ss_dssp HHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHhCCCcEEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEC
Confidence 567788888889999996321 1 1 24667777889998899988764
No 182
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=63.13 E-value=16 Score=27.19 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=27.5
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecCCCch
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~~ 93 (130)
.-|++||||- |+|+|..+|+-+|.-.|...-...
T Consensus 252 ~~~~VlDpF~-GsGtt~~aa~~~gr~~ig~e~~~~ 285 (323)
T 1boo_A 252 PDDLVVDIFG-GSNTTGLVAERESRKWISFEMKPE 285 (323)
T ss_dssp TTCEEEETTC-TTCHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEECCC-CCCHHHHHHHHcCCCEEEEeCCHH
Confidence 4689999984 568999999999999998765443
No 183
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=63.12 E-value=14 Score=24.21 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=32.9
Q ss_pred HHHHHhhC--CCcEEEEeecCc---cc---------H-HHHHHHHHHcCCCCCCEEEecC
Q psy15363 3 DIFVLKAV--PNSILWLLKFPA---VG---------E-ANIQATAQALGLDQHRILFSNV 47 (130)
Q Consensus 3 w~~il~~~--P~a~l~i~g~~~---~~---------~-~~l~~~~~~~g~~~~rv~f~g~ 47 (130)
++.+++.+ |+.++.|.|+.. .. + ..+++++.+.|++.+||...|+
T Consensus 44 ~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 103 (148)
T 4erh_A 44 LYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISARGM 103 (148)
T ss_dssp HHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEEEEE
T ss_pred HHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 56677777 789999999632 11 1 3567778888999889988774
No 184
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=62.79 E-value=26 Score=22.15 Aligned_cols=109 Identities=11% Similarity=0.079 Sum_probs=64.3
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc----cccEEE-cCC-CCCCchHHHHHHh---cCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ----LADVCL-DTP-LCNGHTTSMDVLW---TGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~----~~Dv~l-~~~-~~~~g~~~lEAla---~G~ 83 (130)
.+++++.+....+..+++.+++.|.. +.. -..+.++....+. ..|+++ |.. +...|..+++.+. ..+
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~---v~~-~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~ 112 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFN---IID-TAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNA 112 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---EEE-EESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCe---EEE-EECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCC
Confidence 47778876444567888888887752 320 2223344444443 458884 543 4455777666654 478
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|||.+.+..-..... -....|..+++.. +.+++.+...++++
T Consensus 113 ~ii~ls~~~~~~~~~--~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 113 RVIMISALGKEQLVK--DCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CEEEEESCCCHHHHH--HHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred cEEEEeccCcHHHHH--HHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 999886643322221 2234588887653 67788877766653
No 185
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=62.76 E-value=52 Score=25.55 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc-ccEE-EcCCCCCCchHHHHHHh-cCCcEEecCCCchhhh--hH
Q psy15363 24 GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVC-LDTPLCNGHTTSMDVLW-TGTPVVTLPGETLASR--VA 98 (130)
Q Consensus 24 ~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~-~Dv~-l~~~~~~~g~~~lEAla-~G~PvV~~~g~~~~~r--~~ 98 (130)
....|++.+++.|+. +|.-..+.+.+--+-.. +|++ + .+..-.-..+|++++ .|+|||...|-.-..- .+
T Consensus 102 ~~~~L~~~~~~~Gi~----~~stpfD~~svd~l~~~~vd~~KI-gS~~~~N~pLL~~va~~gKPViLStGmaTl~Ei~~A 176 (385)
T 1vli_A 102 WILPLLDYCREKQVI----FLSTVCDEGSADLLQSTSPSAFKI-ASYEINHLPLLKYVARLNRPMIFSTAGAEISDVHEA 176 (385)
T ss_dssp GHHHHHHHHHHTTCE----EECBCCSHHHHHHHHTTCCSCEEE-CGGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCc----EEEccCCHHHHHHHHhcCCCEEEE-CcccccCHHHHHHHHhcCCeEEEECCCCCHHHHHHH
Confidence 456788899999985 55666665444323233 6877 5 333334466787776 6999999988532221 24
Q ss_pred HHHHHhcCCCCc
Q psy15363 99 ASQLATLGCPEL 110 (130)
Q Consensus 99 ~~~l~~~g~~~~ 110 (130)
+..+...|.+++
T Consensus 177 ve~i~~~Gn~~i 188 (385)
T 1vli_A 177 WRTIRAEGNNQI 188 (385)
T ss_dssp HHHHHTTTCCCE
T ss_pred HHHHHHCCCCcE
Confidence 555666677653
No 186
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=61.77 E-value=22 Score=27.00 Aligned_cols=42 Identities=5% Similarity=-0.107 Sum_probs=32.0
Q ss_pred CHHHHHHhhccccEEEcCCCCCC-chHHHHHHhcCCcEEecCC
Q psy15363 49 AKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 49 ~~~~~~~~~~~~Dv~l~~~~~~~-g~~~lEAla~G~PvV~~~g 90 (130)
+.+++..+++.+|+++...|... ......++..|+.+|.+..
T Consensus 67 ~~~~l~~ll~~~DvVIn~~P~~~~~~v~~a~l~~G~~~vD~s~ 109 (365)
T 2z2v_A 67 NFDKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVSF 109 (365)
T ss_dssp CHHHHHHHHTTCSCEEECCCHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CHHHHHHHHhCCCEEEECCChhhhHHHHHHHHHhCCeEEEccC
Confidence 34667778889999998877543 3456778999999998765
No 187
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=61.50 E-value=25 Score=21.53 Aligned_cols=109 Identities=12% Similarity=0.134 Sum_probs=63.4
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc-------cccEE-EcC-CCCCCchHHHHHHhc--
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ-------LADVC-LDT-PLCNGHTTSMDVLWT-- 81 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~-------~~Dv~-l~~-~~~~~g~~~lEAla~-- 81 (130)
.+++++.+....+..+++.+++.|. ..|..... ..+....+. ..|+. +|- .|...|..+++.+..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~--~~v~~~~~--~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~ 78 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGI--ENIELACD--GQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL 78 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTC--CCEEEESS--HHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCC--ceEEEECC--HHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc
Confidence 4567777643456778888887775 24544332 234333332 36888 453 365567877777752
Q ss_pred --CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 82 --GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 82 --G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
.+|||.+.+..-..... -....|..+++.. +.+++.+...++..
T Consensus 79 ~~~~~ii~lt~~~~~~~~~--~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 79 GYTSPIVALTAFADDSNIK--ECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CCCSCEEEEESCCSHHHHH--HHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCHHHHH--HHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 57888776543222211 1224588887653 67777777666543
No 188
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=61.19 E-value=26 Score=21.56 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=65.0
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh-----cCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW-----TGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla-----~G~ 83 (130)
.+++++.+.......++..+++.|. .|... .+.++....+. ..|+. +|. .|...|..+++.+. ..+
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~ 79 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGY---EVRRA--ASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTL 79 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEE--SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCC---EEEEe--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCc
Confidence 5677777643456778888888775 34432 33455444443 36888 454 35556888877764 368
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|+|...+..-...... ....|..+++.. +.+++.+...+++.
T Consensus 80 pii~~t~~~~~~~~~~--~~~~ga~~~l~KP~~~~~L~~~i~~~l~ 123 (136)
T 3t6k_A 80 PILMLTAQGDISAKIA--GFEAGANDYLAKPFEPQELVYRVKNILA 123 (136)
T ss_dssp CEEEEECTTCHHHHHH--HHHHTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred cEEEEecCCCHHHHHH--HHhcCcceEEeCCCCHHHHHHHHHHHHh
Confidence 9998766433222111 223588887763 67788777766553
No 189
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=61.03 E-value=26 Score=21.50 Aligned_cols=109 Identities=8% Similarity=0.088 Sum_probs=62.0
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcCCCCCCchHHHHHHh---cCCcE
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDTPLCNGHTTSMDVLW---TGTPV 85 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~~~~~~g~~~lEAla---~G~Pv 85 (130)
..+++++.+.......+++.+++.|. +|.... +..+....+. ..|+. +|..+...|..+++.+. ..+|+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pi 78 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGF---NVIWAK--NEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKV 78 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTC---EEEEES--SHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC---EEEEEC--CHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCE
Confidence 35677887644456778888887775 344332 3345544443 36887 45522223555555553 46899
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|.+.+..-..... -....|..+++.. +.+++.+...++.+
T Consensus 79 i~ls~~~~~~~~~--~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 79 AVLSAYVDKDLII--NSVKAGAVDYILKPFRLDYLLERVKKIIS 120 (142)
T ss_dssp EEEESCCCHHHHH--HHHHHTCSCEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHH--HHHHCCcceeEeCCCCHHHHHHHHHHHHh
Confidence 8876543322221 1223588887653 67777776666544
No 190
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=61.01 E-value=9.2 Score=29.32 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=44.9
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGT 83 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~ 83 (130)
-++|.+.|...|..+.+.....+.+.+....+. ..+.|.. .+.+++ ...+|+.+...|.+-.....+.+ .|+
T Consensus 30 lrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~---~~l~~~~-~~~~~~---~~~~Dvvf~alp~~~s~~~~~~~-~g~ 101 (351)
T 1vkn_A 30 VRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL---ENSILSE-FDPEKV---SKNCDVLFTALPAGASYDLVREL-KGV 101 (351)
T ss_dssp HHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC---CCCBCBC-CCHHHH---HHHCSEEEECCSTTHHHHHHTTC-CSC
T ss_pred HHHHHcCCCcEEEEEeCcccccCChHHhChhhc---cCceEEe-CCHHHh---hcCCCEEEECCCcHHHHHHHHHh-CCC
Confidence 456666676666666542111122332222221 1233333 233333 35799999887776666666666 899
Q ss_pred cEEecCCCc
Q psy15363 84 PVVTLPGET 92 (130)
Q Consensus 84 PvV~~~g~~ 92 (130)
.||-..+++
T Consensus 102 ~VIDlSsdf 110 (351)
T 1vkn_A 102 KIIDLGADF 110 (351)
T ss_dssp EEEESSSTT
T ss_pred EEEECChhh
Confidence 999888763
No 191
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=60.76 E-value=15 Score=27.37 Aligned_cols=81 Identities=12% Similarity=0.008 Sum_probs=49.1
Q ss_pred HHHHHhh-CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHh--hccccEEEcCCCCC-CchHHHHH
Q psy15363 3 DIFVLKA-VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRR--GQLADVCLDTPLCN-GHTTSMDV 78 (130)
Q Consensus 3 w~~il~~-~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~--~~~~Dv~l~~~~~~-~g~~~lEA 78 (130)
+.+.+.+ .|+.+++.+.+..+.+ ..+++++++|+. . + ..+.+++... ...+|+.++..|.. ..-.+.+|
T Consensus 19 ~~~~l~~~~~~~elvav~d~~~~~-~~~~~a~~~g~~---~-~--~~~~e~ll~~~~~~~iDvV~~atp~~~h~~~a~~a 91 (312)
T 1nvm_B 19 LMIKVLRNAKYLEMGAMVGIDAAS-DGLARAQRMGVT---T-T--YAGVEGLIKLPEFADIDFVFDATSASAHVQNEALL 91 (312)
T ss_dssp HHHHHHHHCSSEEEEEEECSCTTC-HHHHHHHHTTCC---E-E--SSHHHHHHHSGGGGGEEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHhhCcCeEEEEEEeCChhh-hHHHHHHHcCCC---c-c--cCCHHHHHhccCCCCCcEEEECCChHHHHHHHHHH
Confidence 3455544 8888888777532222 134566777763 1 1 1223444433 24689998876633 34557888
Q ss_pred Hhc--CCcEEecCC
Q psy15363 79 LWT--GTPVVTLPG 90 (130)
Q Consensus 79 la~--G~PvV~~~g 90 (130)
+.. |+.|++.+.
T Consensus 92 l~a~~Gk~Vi~ekp 105 (312)
T 1nvm_B 92 RQAKPGIRLIDLTP 105 (312)
T ss_dssp HHHCTTCEEEECST
T ss_pred HHhCCCCEEEEcCc
Confidence 999 999999654
No 192
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=60.53 E-value=39 Score=23.35 Aligned_cols=109 Identities=14% Similarity=0.104 Sum_probs=66.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh---cCC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW---TGT 83 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla---~G~ 83 (130)
+..+++++.+.......++..+++.|. +|... .+.++....+. ..|++ +|- .|...|..+++.+. ..+
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~ 96 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGF---EVYTA--TNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDA 96 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTC---EEEEE--SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCC---EEEEE--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 356888888644456778888887775 34432 34455444443 47888 564 36666877777765 368
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
|||.+.+..-...... .-..|..+++.. +.+++.+...+++
T Consensus 97 ~ii~lt~~~~~~~~~~--~~~~Ga~~yl~Kp~~~~~L~~~i~~~~ 139 (250)
T 3r0j_A 97 PALFLTARDSLQDKIA--GLTLGGDDYVTKPFSLEEVVARLRVIL 139 (250)
T ss_dssp CEEEEECSTTHHHHHH--HHTSTTCEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHH--HHHcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 9998766433222211 224588887663 6777777666554
No 193
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=60.45 E-value=18 Score=28.12 Aligned_cols=79 Identities=13% Similarity=-0.031 Sum_probs=52.9
Q ss_pred HHHHhhCC-CcEEEEeecCcc-c----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcC-CCCCCchHHH
Q psy15363 4 IFVLKAVP-NSILWLLKFPAV-G----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT-PLCNGHTTSM 76 (130)
Q Consensus 4 ~~il~~~P-~a~l~i~g~~~~-~----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~-~~~~~g~~~l 76 (130)
..|.+... +..=+++|.-+. . -++|+++++++|.. -.++.+|....+.+.+ + .+|+|+.. .| .+++.
T Consensus 256 ~~I~kA~dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk-~y~i~vg~inp~KLan-F-~iD~fV~vaCP---rlsid 329 (378)
T 3lzd_A 256 AQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGRE-ARLIVMNDVNYHKLEG-F-PFEAYVVVACP---RVPLD 329 (378)
T ss_dssp HHHHHHTTCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCE-EEEEEESSCCHHHHTT-S-CCSEEEECSCT---HHHHS
T ss_pred HHHHHHhcCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCc-EEEEEeCCCCHHHHhC-C-CCCEEEEecCC---Ccccc
Confidence 34443332 344466775321 1 35788899999986 6788889998877755 4 49999754 35 35666
Q ss_pred HHHhcCCcEEec
Q psy15363 77 DVLWTGTPVVTL 88 (130)
Q Consensus 77 EAla~G~PvV~~ 88 (130)
+.-..-+||||.
T Consensus 330 d~~~F~KPvLTP 341 (378)
T 3lzd_A 330 DYGAWRKPVLTP 341 (378)
T ss_dssp CCSCCSSCEECH
T ss_pred chhhCCCcccCH
Confidence 667788999984
No 194
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=60.12 E-value=28 Score=21.65 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=64.2
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh-----
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW----- 80 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla----- 80 (130)
....+++++.+....+..+++.+++.|. ++... .+.++....+. ..|+. +|- .|...|..+++.+.
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~ 86 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGH---KVLCV--NGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQAS 86 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--C---EEEEE--SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHT
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCC---eEEEe--CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhc
Confidence 3456788887643456778888887764 34433 23455444443 47887 554 36666888888774
Q ss_pred --cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 81 --TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 81 --~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
-.+|+|.+.+........ -....|..+++.. +.+++.+...++..
T Consensus 87 ~~~~~pii~~s~~~~~~~~~--~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 87 GMRYTPVVVLSADVTPEAIR--ACEQAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp TCCCCCEEEEESCCCHHHHH--HHHHTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred cCCCCeEEEEeCCCCHHHHH--HHHHcChhheeeCCCCHHHHHHHHHHHHH
Confidence 237888876643322221 2234588887653 67788877776654
No 195
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=59.95 E-value=15 Score=26.25 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.4
Q ss_pred CCCchHHHHHHhcCCcEEec
Q psy15363 69 CNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 69 ~~~g~~~lEAla~G~PvV~~ 88 (130)
.......+.|++.|+|||..
T Consensus 77 ~~rt~K~~~ala~gipiV~~ 96 (241)
T 2vxb_A 77 FSRKVKYLEALAFNIPCVHP 96 (241)
T ss_dssp CCCCHHHHHHHHHTCCEECT
T ss_pred CCCcHHHHHHHHcCCCEecH
Confidence 34467789999999999975
No 196
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=59.55 E-value=50 Score=24.30 Aligned_cols=109 Identities=15% Similarity=0.047 Sum_probs=56.9
Q ss_pred EEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC-----CHHHHHHhhcc---ccEEEcCCCCCCc------hHHHHHHh
Q psy15363 15 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-----AKEEHVRRGQL---ADVCLDTPLCNGH------TTSMDVLW 80 (130)
Q Consensus 15 l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~-----~~~~~~~~~~~---~Dv~l~~~~~~~g------~~~lEAla 80 (130)
+-+++.+|..-..+-.++.+.|+-...++=+|.. +..|++.++.. .++.+ -+-+.++ -..+.+.+
T Consensus 154 va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~-l~~E~~~~~~~~~~~~~~~~~ 232 (297)
T 2yv2_A 154 VAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALV-LIGEIGGDMEERAAEMIKKGE 232 (297)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEE-EEECSSSSHHHHHHHHHHTTS
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEE-EEEeeCCCHHHHHHHHHHhcc
Confidence 3344433333345667777777765667767654 35777777744 33332 1223333 22333445
Q ss_pred cCCcEEecC-CCch-hhh---hH--------------HHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 81 TGTPVVTLP-GETL-ASR---VA--------------ASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 81 ~G~PvV~~~-g~~~-~~r---~~--------------~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
.++|||++. |.+. .++ ++ .+.++..| -..+++.+++.+.+.+.+
T Consensus 233 ~~KPVv~~k~G~s~~~~~~~sHtgal~~~~~g~~~~~~aa~~~aG--v~~v~~~~el~~~~~~~~ 295 (297)
T 2yv2_A 233 FTKPVIAYIAGRTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAG--VEVAETPFEVPELVRKAL 295 (297)
T ss_dssp CCSCEEEEESCCC------------------CSHHHHHHHHHTTT--CEEESSGGGHHHHHHHHC
T ss_pred CCCCEEEEEeCCCCccccccCCccccccCCCCCHHHHHHHHHHcC--CeEeCCHHHHHHHHHHHh
Confidence 799999984 3332 111 11 11222222 255678888888877665
No 197
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=59.02 E-value=34 Score=27.33 Aligned_cols=106 Identities=14% Similarity=0.028 Sum_probs=61.6
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC---------HHHHHHhhcc---ccEEE---cCCCCCCchHHHHH
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---------KEEHVRRGQL---ADVCL---DTPLCNGHTTSMDV 78 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~---------~~~~~~~~~~---~Dv~l---~~~~~~~g~~~lEA 78 (130)
.+-+++.+|..-..+-.++.+.|+....++=+|..+ ..|++.++.. .++.+ .+..++-.-..+++
T Consensus 114 ~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~e~~~~~f~~~ 193 (480)
T 3dmy_A 114 NIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNA 193 (480)
T ss_dssp EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred CEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHHHHH
Confidence 455666545444566777888887656777777663 5667776654 34432 22111101224554
Q ss_pred H-hcCCcEEecCC-CchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 79 L-WTGTPVVTLPG-ETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 79 l-a~G~PvV~~~g-~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
. ..++|||++.. .+-.+ ++. .+-+.+++.+|+.+.+..|..
T Consensus 194 ar~~~KPVV~~k~Grs~~g------~r~--~Gvirv~~~~el~~~a~~l~~ 236 (480)
T 3dmy_A 194 MKATGKPTVALFLGYTPAV------ARD--ENVWFASSLDEAARLACLLSR 236 (480)
T ss_dssp HHHHCSCEEEEETTCCCSS------SEE--TTEEEESSHHHHHHHHHHHHH
T ss_pred HHhCCCCEEEEEeCCCCcc------ccc--CCEEEECCHHHHHHHHHHHhc
Confidence 4 68999999853 32222 111 122557899999998887764
No 198
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=58.88 E-value=20 Score=25.80 Aligned_cols=72 Identities=18% Similarity=0.100 Sum_probs=37.8
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEE-ecCCC--------HHHHHHhhccccEEEcCCCCCCchHHHHHHhcCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILF-SNVAA--------KEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f-~g~~~--------~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~ 83 (130)
.++.++|- |..-..+.+.+.+.+ +.+.- ..+-+ ..++..+. .+|+.+|-..-......++ +..|+
T Consensus 4 mkI~ViGa-GrMG~~i~~~l~~~~---~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~p~a~~~~~~-l~~g~ 77 (243)
T 3qy9_A 4 MKILLIGY-GAMNQRVARLAEEKG---HEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSNPNLLFPLLD-EDFHL 77 (243)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSCHHHHHHHHT-SCCCC
T ss_pred eEEEEECc-CHHHHHHHHHHHhCC---CEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCChHHHHHHHH-HhcCC
Confidence 46778886 443345555555543 22221 11111 12233334 7999997443222234455 89999
Q ss_pred cEEecCC
Q psy15363 84 PVVTLPG 90 (130)
Q Consensus 84 PvV~~~g 90 (130)
|+|+...
T Consensus 78 ~vVigTT 84 (243)
T 3qy9_A 78 PLVVATT 84 (243)
T ss_dssp CEEECCC
T ss_pred ceEeCCC
Confidence 9997643
No 199
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=58.64 E-value=51 Score=24.32 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=37.5
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC---H-HHHHH------------hh--ccccEEEcCCCCC-CchH
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---K-EEHVR------------RG--QLADVCLDTPLCN-GHTT 74 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~---~-~~~~~------------~~--~~~Dv~l~~~~~~-~g~~ 74 (130)
++.++|-++.+...+.+++.+.|. +|.....-+ . +++.. .+ ..+|+++-+.... ..-.
T Consensus 6 ~i~~iGiGg~Gms~~A~~L~~~G~---~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~ 82 (326)
T 3eag_A 6 HIHIIGIGGTFMGGLAAIAKEAGF---EVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDV 82 (326)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTTC---EEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHH
T ss_pred EEEEEEECHHHHHHHHHHHHhCCC---EEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHH
Confidence 566777655666667777777774 344443321 1 11111 11 2478876544221 1233
Q ss_pred HHHHHhcCCcEEe
Q psy15363 75 SMDVLWTGTPVVT 87 (130)
Q Consensus 75 ~lEAla~G~PvV~ 87 (130)
+.+|...|+||+.
T Consensus 83 ~~~a~~~gi~v~~ 95 (326)
T 3eag_A 83 VEAILNLGLPYIS 95 (326)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHHHcCCcEEe
Confidence 5667777777775
No 200
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=58.45 E-value=31 Score=24.04 Aligned_cols=77 Identities=9% Similarity=-0.036 Sum_probs=46.6
Q ss_pred hCCCcEEEEeecC-c--c---cHHHHHHHHHHcCCCCCCEEEec--CCCHHHHHHhhccccEEEcCCCCCC---------
Q psy15363 9 AVPNSILWLLKFP-A--V---GEANIQATAQALGLDQHRILFSN--VAAKEEHVRRGQLADVCLDTPLCNG--------- 71 (130)
Q Consensus 9 ~~P~a~l~i~g~~-~--~---~~~~l~~~~~~~g~~~~rv~f~g--~~~~~~~~~~~~~~Dv~l~~~~~~~--------- 71 (130)
+.-+.++.++... + + .-..+++.++++|++ +..+. ..+.++....+..+|..+-|--...
T Consensus 24 ~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~---v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~~~ 100 (206)
T 3l4e_A 24 NLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLL---VEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRT 100 (206)
T ss_dssp CCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCE---EEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHHHH
T ss_pred HcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCe---EEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHHC
Confidence 3446788888631 1 1 234667788899974 44442 1245667777889999874331100
Q ss_pred --chHHHHHHhcCCcEEec
Q psy15363 72 --HTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 72 --g~~~lEAla~G~PvV~~ 88 (130)
-..+-|+...|+|++..
T Consensus 101 gl~~~l~~~~~~G~p~~G~ 119 (206)
T 3l4e_A 101 GADKLILEEIAAGKLYIGE 119 (206)
T ss_dssp THHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHHHHHHcCCeEEEE
Confidence 01356677789999965
No 201
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=58.11 E-value=25 Score=23.86 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----c-EEEcCCCCC-CchHHHHHHh-cCCcEEec
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVLW-TGTPVVTL 88 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----D-v~l~~~~~~-~g~~~lEAla-~G~PvV~~ 88 (130)
.+.+++.++++|+ .+.|.-.=...++..+++.+ | |.++|--|+ .+..+.+|++ .++|+|=.
T Consensus 32 ~~~l~~~a~~~g~---~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEV 99 (154)
T 1uqr_A 32 EQHLQQSAQAQGY---ELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEV 99 (154)
T ss_dssp HHHHHHHHHHTTC---EEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCC---EEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEE
Confidence 3467777788886 47777666666777777664 3 457787776 4778899975 58999944
No 202
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=57.70 E-value=53 Score=25.40 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=21.1
Q ss_pred hHHHH-HHhcCCcEEecCCCch-h--hhhHHHHHHhcCCCC
Q psy15363 73 TTSMD-VLWTGTPVVTLPGETL-A--SRVAASQLATLGCPE 109 (130)
Q Consensus 73 ~~~lE-Ala~G~PvV~~~g~~~-~--~r~~~~~l~~~g~~~ 109 (130)
..+++ +-..|+||+...|-.. . -...+..+...|.++
T Consensus 239 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~ 279 (385)
T 3nvt_A 239 FELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGK 279 (385)
T ss_dssp HHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCe
Confidence 34444 4457999999887621 1 122444555556655
No 203
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=57.31 E-value=15 Score=27.55 Aligned_cols=74 Identities=11% Similarity=-0.006 Sum_probs=44.1
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTG 82 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G 82 (130)
.+.+++.|+..++-+.+. ..++ ..++++. +... -+.++++.- ..+|+++-+.|. ...-.+..|+..|
T Consensus 22 ~~~l~~~~~~~l~av~d~--~~~~---~~~~~~~----~~~~--~~~~~ll~~-~~vD~V~i~tp~~~H~~~~~~al~aG 89 (358)
T 3gdo_A 22 GPLLDVLDEYQISKIMTS--RTEE---VKRDFPD----AEVV--HELEEITND-PAIELVIVTTPSGLHYEHTMACIQAG 89 (358)
T ss_dssp HHHHTTCTTEEEEEEECS--CHHH---HHHHCTT----SEEE--SSTHHHHTC-TTCCEEEECSCTTTHHHHHHHHHHTT
T ss_pred HHHHhhCCCeEEEEEEcC--CHHH---HHhhCCC----CceE--CCHHHHhcC-CCCCEEEEcCCcHHHHHHHHHHHHcC
Confidence 355677888888777653 2222 3344431 1222 233454321 258988655554 4466788999999
Q ss_pred CcEEecC
Q psy15363 83 TPVVTLP 89 (130)
Q Consensus 83 ~PvV~~~ 89 (130)
++|++-+
T Consensus 90 khVl~EK 96 (358)
T 3gdo_A 90 KHVVMEK 96 (358)
T ss_dssp CEEEEES
T ss_pred CeEEEec
Confidence 9999954
No 204
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=57.19 E-value=45 Score=23.00 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=42.1
Q ss_pred HHhhccccEEEcCCCCCCchH--HHHHHh------cCCcEEecCCC-chhhhhH--HHHHHhcCC-C------CceecCH
Q psy15363 54 VRRGQLADVCLDTPLCNGHTT--SMDVLW------TGTPVVTLPGE-TLASRVA--ASQLATLGC-P------ELIARTH 115 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~~~~~g~~--~lEAla------~G~PvV~~~g~-~~~~r~~--~~~l~~~g~-~------~~va~~~ 115 (130)
..+...+|.|+ .+|-+.||- ++|++. .++||+.+... .+..... ..+.. .|. + -.+++|+
T Consensus 92 ~~~~~~sda~I-vlPGG~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~~~l~~~l~~~~~-~Gfi~~~~~~~~~~~~~~ 169 (191)
T 1t35_A 92 AKMSELADGFI-SMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQ-EGFSNESHLKLIHSSSRP 169 (191)
T ss_dssp HHHHHHCSEEE-ECSCCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTHHHHHHHHHHHH-TTSSCTTHHHHEEEESSH
T ss_pred HHHHHHCCEEE-EeCCCccHHHHHHHHHHHHHhCCCCCCEEEecCCcccchHHHHHHHHHH-CCCCCHHHcCeEEEeCCH
Confidence 34456799887 355455553 789996 88999999753 3332221 22222 221 1 1456888
Q ss_pred HHHHHHHHHh
Q psy15363 116 KEYQDIAIRL 125 (130)
Q Consensus 116 ~~y~~~a~~l 125 (130)
++.++...+.
T Consensus 170 ~e~~~~l~~~ 179 (191)
T 1t35_A 170 DELIEQMQNY 179 (191)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 8888876653
No 205
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=57.05 E-value=36 Score=25.36 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHHhcCCcEEecCCCc--h-hhhhHHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVLWTGTPVVTLPGET--L-ASRVAAS 100 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAla~G~PvV~~~g~~--~-~~r~~~~ 100 (130)
.+.+++..++.|+. ++.-..+.++...+...+|++ +-++-...---+-++-..|+||+..+|-. . .-.....
T Consensus 77 L~~L~~~~~e~Glp----~~tev~d~~~v~~l~~~vd~lkIgA~~~~n~~LLr~~a~~gkPVilK~G~~~t~~e~~~ave 152 (288)
T 3tml_A 77 LRILSEVKRQLGLP----VLTDVHSIDEIEQVASVVDVLQTPAFLCRQTDFIHACARSGKPVNIKKGQFLAPHDMKNVID 152 (288)
T ss_dssp HHHHHHHHHHHCCC----EEEECCSGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHTSSSCEEEECCTTCCTTHHHHHHH
T ss_pred HHHHHHHHHhcCCe----EEEEeCCHHHHHHHHHhCCEEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHH
Confidence 34677788888886 444444433332223348888 54443322222445667899999998853 1 1223444
Q ss_pred HHHhcCC
Q psy15363 101 QLATLGC 107 (130)
Q Consensus 101 ~l~~~g~ 107 (130)
.+...|.
T Consensus 153 ~i~~~Gn 159 (288)
T 3tml_A 153 KARDAAR 159 (288)
T ss_dssp HHHHHHH
T ss_pred HHHHcCC
Confidence 4444454
No 206
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=56.98 E-value=20 Score=26.51 Aligned_cols=74 Identities=4% Similarity=-0.019 Sum_probs=47.4
Q ss_pred CCCcEEEEeecCcc--cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEE
Q psy15363 10 VPNSILWLLKFPAV--GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVV 86 (130)
Q Consensus 10 ~P~a~l~i~g~~~~--~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV 86 (130)
.|+..++-+.+..+ ..+.+++.++++|+. .+ .+.+.++++.- ...|+++-..| ....-.+.+|+..|++|+
T Consensus 22 ~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~ll~~-~~vD~V~I~tp~~~H~~~~~~al~aGkhVl 95 (337)
T 3ip3_A 22 DEECSITGIAPGVPEEDLSKLEKAISEMNIK-PK----KYNNWWEMLEK-EKPDILVINTVFSLNGKILLEALERKIHAF 95 (337)
T ss_dssp CTTEEEEEEECSSTTCCCHHHHHHHHTTTCC-CE----ECSSHHHHHHH-HCCSEEEECSSHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEEecCCchhhHHHHHHHHHHcCCC-Cc----ccCCHHHHhcC-CCCCEEEEeCCcchHHHHHHHHHHCCCcEE
Confidence 67888887775322 234666677777874 22 12445665442 24788854444 334566899999999999
Q ss_pred ecC
Q psy15363 87 TLP 89 (130)
Q Consensus 87 ~~~ 89 (130)
+-+
T Consensus 96 ~EK 98 (337)
T 3ip3_A 96 VEK 98 (337)
T ss_dssp ECS
T ss_pred EeC
Confidence 864
No 207
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=56.34 E-value=34 Score=24.64 Aligned_cols=79 Identities=10% Similarity=-0.101 Sum_probs=40.9
Q ss_pred HHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEc-CCCCCCchHHHHHHhcCC
Q psy15363 5 FVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD-TPLCNGHTTSMDVLWTGT 83 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~-~~~~~~g~~~lEAla~G~ 83 (130)
+|.......++.+.|..|..-..+.+.+++.|. .+.+.+++..- .-+..+||.+| |.|...-..+--+...|+
T Consensus 5 ~~~~~~~~~~~~v~Ga~GrMG~~i~~~~~~~~~-----elv~~id~~~~-~~l~~~DVvIDFT~P~a~~~~~~~~~~~g~ 78 (228)
T 1vm6_A 5 KIHHHHHHMKYGIVGYSGRMGQEIQKVFSEKGH-----ELVLKVDVNGV-EELDSPDVVIDFSSPEALPKTVDLCKKYRA 78 (228)
T ss_dssp -------CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEEETTEE-EECSCCSEEEECSCGGGHHHHHHHHHHHTC
T ss_pred ccchhhccceeEEEEecCHHHHHHHHHHhCCCC-----EEEEEEcCCCc-ccccCCCEEEECCCHHHHHHHHHHHHHcCC
Confidence 344455567888888645433445555544343 22222221100 11246899996 556654444667889999
Q ss_pred cEEecC
Q psy15363 84 PVVTLP 89 (130)
Q Consensus 84 PvV~~~ 89 (130)
|+|.-.
T Consensus 79 ~~ViGT 84 (228)
T 1vm6_A 79 GLVLGT 84 (228)
T ss_dssp EEEECC
T ss_pred CEEEeC
Confidence 988743
No 208
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=55.99 E-value=30 Score=20.66 Aligned_cols=108 Identities=9% Similarity=0.050 Sum_probs=64.0
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh--cCCcEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW--TGTPVV 86 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla--~G~PvV 86 (130)
.+++++.+.......++..+++.|. +|... .+.++....+. ..|+. +|. .|...|..+++.+. ..+|+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii 77 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGY---EVHCA--HDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPII 77 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEE--SSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCE---EEEEe--CCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 4677787644456778888888775 34432 34455544443 37887 554 35556777777664 368988
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
...+..-..... -....|..+++.. +.+++.....+.++
T Consensus 78 ~~t~~~~~~~~~--~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 78 MLTAKDSEIDKV--IGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EEEESSCHHHHH--HHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EEECCCChHHHH--HHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 775543222111 1234688887653 67777777666543
No 209
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=55.87 E-value=50 Score=25.27 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc-ccEEEcCCCCCCchHHHHHHh-cCCcEEecCCCchhhh--hHHHH
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVCLDTPLCNGHTTSMDVLW-TGTPVVTLPGETLASR--VAASQ 101 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~-~Dv~l~~~~~~~g~~~lEAla-~G~PvV~~~g~~~~~r--~~~~~ 101 (130)
..|++.+++.|+. +|.-..+.+.+--+-.. +|++==.+..-.-..+++.++ .|+|||...|-.-..- .++..
T Consensus 81 ~~L~~~~~~~Gi~----~~st~fD~~svd~l~~~~v~~~KI~S~~~~N~pLL~~va~~gKPviLstGmstl~Ei~~Ave~ 156 (350)
T 3g8r_A 81 QKLVAEMKANGFK----AICTPFDEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTAGARREDIDKVVSF 156 (350)
T ss_dssp HHHHHHHHHTTCE----EEEEECSHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc----EEeccCCHHHHHHHHHcCCCEEEECcccccCHHHHHHHHhhCCcEEEECCCCCHHHHHHHHHH
Confidence 4677888898885 55556665444333344 788833444444466777765 7999999887532111 23444
Q ss_pred HHhcCC
Q psy15363 102 LATLGC 107 (130)
Q Consensus 102 l~~~g~ 107 (130)
+...|.
T Consensus 157 i~~~g~ 162 (350)
T 3g8r_A 157 MLHRGK 162 (350)
T ss_dssp HHTTTC
T ss_pred HHHcCC
Confidence 544454
No 210
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=55.55 E-value=22 Score=26.44 Aligned_cols=74 Identities=12% Similarity=0.037 Sum_probs=42.4
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTG 82 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G 82 (130)
.+.+.+.|+..++-+.+. ..++.+ ++.+ .+.. +-+.++++.- ...|+++-+.|. ...-.+..|+..|
T Consensus 24 ~~~~~~~~~~~l~av~d~--~~~~~~---~~~~----~~~~--~~~~~~ll~~-~~vD~V~i~tp~~~H~~~~~~al~aG 91 (352)
T 3kux_A 24 APLIMGTPGLELAGVSSS--DASKVH---ADWP----AIPV--VSDPQMLFND-PSIDLIVIPTPNDTHFPLAQSALAAG 91 (352)
T ss_dssp HHHHHTSTTEEEEEEECS--CHHHHH---TTCS----SCCE--ESCHHHHHHC-SSCCEEEECSCTTTHHHHHHHHHHTT
T ss_pred HHHHhhCCCcEEEEEECC--CHHHHH---hhCC----CCce--ECCHHHHhcC-CCCCEEEEeCChHHHHHHHHHHHHCC
Confidence 345677788887766642 222222 1221 1111 1234554431 238988655554 4456788999999
Q ss_pred CcEEecC
Q psy15363 83 TPVVTLP 89 (130)
Q Consensus 83 ~PvV~~~ 89 (130)
++|++-+
T Consensus 92 khV~~EK 98 (352)
T 3kux_A 92 KHVVVDK 98 (352)
T ss_dssp CEEEECS
T ss_pred CcEEEEC
Confidence 9999854
No 211
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=55.05 E-value=25 Score=28.21 Aligned_cols=73 Identities=12% Similarity=0.004 Sum_probs=51.0
Q ss_pred cEEEEeecCc------ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCc
Q psy15363 13 SILWLLKFPA------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTP 84 (130)
Q Consensus 13 a~l~i~g~~~------~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~P 84 (130)
-.+-|+|.-. .+...+++++++.|+. -.+.|.|..+.+|+.. +..|.+-+-.+++ .+..+.+.| -+|+|
T Consensus 154 ~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~-v~~~~pgg~t~~ei~~-~~~A~~niv~~~~-~g~~~A~~Le~r~GiP 230 (525)
T 3aek_B 154 VTCNLLGATALGFRHRDDVAEVTKLLATMGIK-VNVCAPLGASPDDLRK-LGQAHFNVLMYPE-TGESAARHLERACKQP 230 (525)
T ss_dssp CEEEEEEECTTCTTHHHHHHHHHHHHHTTTCE-EEEEEETTCCHHHHHT-GGGSSEEEECCHH-HHHHHHHHHHHHSCCC
T ss_pred CceEEEecCCCCCCChhhHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHh-hccCCEEEEEChh-hHHHHHHHHHHHcCCC
Confidence 4677887422 2346799999999996 5566788888888865 5567777654444 345667777 46999
Q ss_pred EEec
Q psy15363 85 VVTL 88 (130)
Q Consensus 85 vV~~ 88 (130)
.+..
T Consensus 231 ~i~~ 234 (525)
T 3aek_B 231 FTKI 234 (525)
T ss_dssp BCCC
T ss_pred ceec
Confidence 9875
No 212
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=55.01 E-value=41 Score=26.94 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=49.7
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC-------------------CCHH---HHH-HhhccccEEEcC
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-------------------AAKE---EHV-RRGQLADVCLDT 66 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~-------------------~~~~---~~~-~~~~~~Dv~l~~ 66 (130)
.++.+++++|-++.++..+..++++.++...+|+.... ++.+ +.+ .+++..|++++.
T Consensus 11 ~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN~ 90 (480)
T 2ph5_A 11 LFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDV 90 (480)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEEC
T ss_pred cCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEEC
Confidence 34567788886555555555666665553234433322 2222 322 356557999998
Q ss_pred CCCCCchHHHH-HHhcCCcEEecCC
Q psy15363 67 PLCNGHTTSMD-VLWTGTPVVTLPG 90 (130)
Q Consensus 67 ~~~~~g~~~lE-Ala~G~PvV~~~g 90 (130)
++.-...+++| ++.+|+-+|.+..
T Consensus 91 s~~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 91 SIGISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp CSSSCHHHHHHHHHHHTCEEEESSC
T ss_pred CccccCHHHHHHHHHcCCCEEECCC
Confidence 77666666555 5789999998865
No 213
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=54.96 E-value=12 Score=24.72 Aligned_cols=45 Identities=7% Similarity=-0.044 Sum_probs=31.7
Q ss_pred hHHHHHhhCCCcEEEEeecCcc---cHHHHHHHHHHcCCCCCCEEEecCCC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNVAA 49 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~---~~~~l~~~~~~~g~~~~rv~f~g~~~ 49 (130)
.|..++...|...++++|.+.. -.+.+++.++++|+ .|.+...-.
T Consensus 57 ~l~~l~~~~p~pevliiGTG~~~~~l~p~l~~~l~~~GI---~vE~M~T~a 104 (135)
T 2fvt_A 57 SLQRVFDNANAIDTLIVGTGADVWIAPRQLREALRGVNV---VLDTMQTGP 104 (135)
T ss_dssp TTHHHHHTTTSCSEEEEECTTSCCCCCHHHHHHHHTTTC---EEEEECHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCCCCCcCCHHHHHHHHHcCC---EEEEeCHHH
Confidence 3667788888888889997422 23678888899888 466665443
No 214
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=54.78 E-value=23 Score=24.84 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=17.1
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV 47 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~ 47 (130)
+..+++.| +....+.+++.++++|++.++|++-.+
T Consensus 210 ~~~vyvCG-p~~m~~~v~~~l~~~G~~~~~i~~e~F 244 (250)
T 1tvc_A 210 NPDIYLCG-PPGMIDAACELVRSRGIPGEQVFFEKF 244 (250)
T ss_dssp SSEEEEES-SHHHHHHHHHHHHHHCCCCSEEEECCC
T ss_pred CcEEEEeC-CHHHHHHHHHHHHHcCCCHHHEEEEec
Confidence 44444444 233344555555555665555555443
No 215
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=54.75 E-value=32 Score=20.59 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=63.2
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHh-----cCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLW-----TGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla-----~G~ 83 (130)
.+++++.+....+..+++.+++.|. ..|.... +.++....+. ..|+++ |. .|...|..+++.+. ..+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~--~~v~~~~--~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGF--KQITAAG--DGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTC--SCEECCS--SHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCC--cEEEecC--CHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 4677777643346677888887665 2444333 3344444443 368874 53 35556788888875 368
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|+|...+..-..... ..+ ..|..+++.. +.+++.+...++..
T Consensus 83 ~ii~~s~~~~~~~~~-~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 83 AFIILTAQGDRALVQ-KAA-ALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EEEECCSCCCHHHHH-HHH-HHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHH-HHH-HcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 888876543322221 122 3477776653 66777776665543
No 216
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=54.69 E-value=32 Score=20.58 Aligned_cols=109 Identities=9% Similarity=0.064 Sum_probs=64.4
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEE-EcC-CCCCCchHHHHHHh---cCCc
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVC-LDT-PLCNGHTTSMDVLW---TGTP 84 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~-l~~-~~~~~g~~~lEAla---~G~P 84 (130)
+.+++++.+....+..++..+++.|. .+... .+..+....+.. .|+. +|- .|...|..+++.+. ..+|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~---~v~~~--~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 77 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGF---AVKMH--QSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIP 77 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTC---EEEEE--SCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCc---EEEEe--CCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCC
Confidence 45778888644456778888887764 34432 334555555543 6877 454 35556777777664 4689
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
+|...+..-..... ..+ ..|..+++.. +.+++.+...+...
T Consensus 78 ii~~s~~~~~~~~~-~~~-~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 78 SIVITGHGDVPMAV-EAM-KAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp EEEEECTTCHHHHH-HHH-HTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHH-HHH-HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 98876543222221 122 3588887653 67777776665543
No 217
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=54.56 E-value=34 Score=20.92 Aligned_cols=107 Identities=13% Similarity=0.074 Sum_probs=60.1
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh-----cCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW-----TGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla-----~G~ 83 (130)
.+++++.+....+..+++.+++.|. .|... .+..+....+. ..|++ +|. .|...|..+++.+. ..+
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 78 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGY---RPITA--FSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDI 78 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEE--SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCc---eEEEe--CCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCC
Confidence 4677787643456778888887765 34432 23444444443 36887 454 35556788888875 368
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
|||...+.... .........|..+++.. +.+++.+...++.
T Consensus 79 ~ii~ls~~~~~--~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~ 121 (138)
T 3c3m_A 79 PVLMLTAKPLT--PEEANEYGSYIEDYILKPTTHHQLYEAIEHVL 121 (138)
T ss_dssp CEEEEESSCCC--HHHHHHTTTTCSEEEECCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCh--HHHHHHhhcCHhheEeCCCCHHHHHHHHHHHH
Confidence 99877654321 11112222345576653 4566666655544
No 218
>2l26_A Uncharacterized protein RV0899/MT0922; out membrane protein, membrane protein; NMR {Mycobacterium tuberculosis}
Probab=54.52 E-value=14 Score=27.37 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=42.5
Q ss_pred HHHHHhhCCCcEEEEeecCc---c--c-------H-HHHHHHHHHcCCCCCCEEEecCCC--------HHHHHHhhcccc
Q psy15363 3 DIFVLKAVPNSILWLLKFPA---V--G-------E-ANIQATAQALGLDQHRILFSNVAA--------KEEHVRRGQLAD 61 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~---~--~-------~-~~l~~~~~~~g~~~~rv~f~g~~~--------~~~~~~~~~~~D 61 (130)
++++++++|+.++.|.|... . . | +.+++++.+.|++.+|+...|+-. .++-...=+.++
T Consensus 193 ia~~L~~~p~~~i~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~G~G~~~Pi~~n~t~~gr~~NRRVe 272 (284)
T 2l26_A 193 VADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVE 272 (284)
T ss_dssp HHHHHTTGGGSCEEEEEEECCCSSSCCHHHHHHHHHHHHHHHHHHTTCCTTSEEEEEEESSSCCSCSSSHHHHHHHCEEE
T ss_pred HHHHHHhCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCChHHEEEEEECCcCcCCCCCChhHHHhCCcEE
Confidence 56788899999999999521 1 1 1 246677778899989998876532 123334456788
Q ss_pred EEEcC
Q psy15363 62 VCLDT 66 (130)
Q Consensus 62 v~l~~ 66 (130)
|.+.+
T Consensus 273 i~i~~ 277 (284)
T 2l26_A 273 IVVNL 277 (284)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 87744
No 219
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=54.47 E-value=35 Score=20.91 Aligned_cols=107 Identities=14% Similarity=0.041 Sum_probs=62.2
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc----cccEE-EcCC-CCCCchHHHHHHh---cCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ----LADVC-LDTP-LCNGHTTSMDVLW---TGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~----~~Dv~-l~~~-~~~~g~~~lEAla---~G~ 83 (130)
.+++++.+.....+.+++.+++.|. .|.... +.++....+. ..|++ +|.. +...|..+++.+. ..+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~---~v~~~~--~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 78 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGN---EVLTAS--SSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHM 78 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTC
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCc---eEEEeC--CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 5677887644456788888888774 344332 3344444443 57888 4543 4555766666554 478
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
|+|.+.+..-..... -....|..+++.. +.+++.....+++
T Consensus 79 ~ii~ls~~~~~~~~~--~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 79 AVIILTGHGDLDNAI--LAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp EEEEEECTTCHHHHH--HHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHH--HHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 988876543222221 1234588776653 6667666655443
No 220
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=53.82 E-value=40 Score=21.38 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=62.8
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC-CCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHh-cCCcEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-AAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLW-TGTPVV 86 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~-~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla-~G~PvV 86 (130)
.+++++-+....+..+++.+++.|.. | .+. .+.++-...++ .-|+.+ |- .|...|..+++.+. .++|||
T Consensus 9 ~rILiVdD~~~~~~~l~~~L~~~G~~---v--~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI 83 (123)
T 2lpm_A 9 LRVLVVEDESMIAMLIEDTLCELGHE---V--AATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFI 83 (123)
T ss_dssp CCEEEESSSTTTSHHHHHHHHHHCCC---C--CBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCE---E--EEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEE
Confidence 57788887555678899999999874 2 222 23344444443 478884 53 47667888777764 589999
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
.+.+..-.. .....|..+++.. +.+++.+...++.
T Consensus 84 ~lTa~~~~~-----~~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 84 FATGYGSKG-----LDTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CBCTTCTTS-----CCSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEecCccHH-----HHHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 876632111 1112344455542 6777777665554
No 221
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=52.50 E-value=9.9 Score=28.09 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=41.5
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCC-CCCchHHHHHHhcCCcEEec
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~ 88 (130)
.|+..++-+.+. ..++.+++++++|.. + ...+.++++.- ..+|+++-+.| ....-.+.+|+..|++|++-
T Consensus 26 ~~~~~lvav~d~--~~~~~~~~a~~~~~~--~----~~~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~E 96 (336)
T 2p2s_A 26 DAGAELAGVFES--DSDNRAKFTSLFPSV--P----FAASAEQLITD-ASIDLIACAVIPCDRAELALRTLDAGKDFFTA 96 (336)
T ss_dssp HTTCEEEEEECS--CTTSCHHHHHHSTTC--C----BCSCHHHHHTC-TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCCcEEEEEeCC--CHHHHHHHHHhcCCC--c----ccCCHHHHhhC-CCCCEEEEeCChhhHHHHHHHHHHCCCcEEEe
Confidence 367777666642 223445566666421 1 12234444321 25898865554 34456688999999999985
Q ss_pred C
Q psy15363 89 P 89 (130)
Q Consensus 89 ~ 89 (130)
+
T Consensus 97 K 97 (336)
T 2p2s_A 97 K 97 (336)
T ss_dssp S
T ss_pred C
Confidence 4
No 222
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=52.23 E-value=35 Score=20.28 Aligned_cols=108 Identities=13% Similarity=0.039 Sum_probs=61.4
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEE-EcCC-CCCCchHHHHHHh-----cCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVC-LDTP-LCNGHTTSMDVLW-----TGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~-l~~~-~~~~g~~~lEAla-----~G~ 83 (130)
.+++++.+....+..++..+++.|. ++... .+.++....+.. .|++ +|.. |...|..+++.+. ..+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~---~v~~~--~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 77 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGF---QPVEA--EDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDI 77 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEE--CSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCc---eEEEe--CCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCC
Confidence 3567777643446678888887765 34432 334555555543 5777 4542 4445777777775 468
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|+|...+..-..... -....|..+++.. +.+++.+...++.+
T Consensus 78 ~ii~~s~~~~~~~~~--~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 78 PVVMLTARGEEEDRV--RGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp CEEEEEETTHHHHHH--TTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHH--HHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 988875542221111 1113466676653 67777776655543
No 223
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=52.18 E-value=33 Score=27.65 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=51.7
Q ss_pred cEEEEeecC--cccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh--cCCcEEec
Q psy15363 13 SILWLLKFP--AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW--TGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~--~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla--~G~PvV~~ 88 (130)
-.+-|+|.- +.+...+++++++.|+. -.+.|.|..+.+|+.. +..|++.+-.+++ .+..+.+.|- .|+|.+..
T Consensus 207 ~~VNIlG~~~~~gD~~eikrlL~~~Gi~-v~~~~~gg~t~~ei~~-~~~A~~niv~~~~-~~~~~A~~Leer~GiP~i~~ 283 (533)
T 1mio_A 207 YSINVLGEYNIGGDAWEMDRVLEKIGYH-VNATLTGDATYEKVQN-ADKADLNLVQCHR-SINYIAEMMETKYGIPWIKC 283 (533)
T ss_dssp TEEEEEEECCBTSHHHHHHHHHHHHTCE-EEEEEETTCCHHHHHB-TTSCSEEEESCHH-HHHHHHHHHHHHHCCCEEEC
T ss_pred CeEEEEcCCCChhhHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHh-hhcCCEEEEECHH-HHHHHHHHHHHHhCCCeEEe
Confidence 356677742 12457899999999996 5667888788888854 5677777754443 3456677774 69999986
Q ss_pred C
Q psy15363 89 P 89 (130)
Q Consensus 89 ~ 89 (130)
.
T Consensus 284 ~ 284 (533)
T 1mio_A 284 N 284 (533)
T ss_dssp C
T ss_pred c
Confidence 3
No 224
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=52.15 E-value=26 Score=26.02 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=32.7
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC-CCHHHHHHhh
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-AAKEEHVRRG 57 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~-~~~~~~~~~~ 57 (130)
.+|.+..|++.+++++. |-.-..--..+..|+.++|+++.|. ++...+...+
T Consensus 103 ~~i~~~~p~aivlvvsN--Pvd~~t~i~~k~sg~p~~rvig~gT~LDs~R~~~~l 155 (294)
T 2x0j_A 103 KKIVENAPESKILVVTN--PMDVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERL 155 (294)
T ss_dssp HHHHTTSTTCEEEECSS--SHHHHHHHHHHHSSCCTTSEEECCHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEecC--cchhhHHhhHHHcCCChhhEEEeeeEEeHHHHHHHH
Confidence 46777889999999984 3222222234567998889999864 3433333333
No 225
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=52.04 E-value=50 Score=22.05 Aligned_cols=105 Identities=12% Similarity=0.016 Sum_probs=60.7
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEE-cC-CCCCCchHHHHHHh---cCCcEEec
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCL-DT-PLCNGHTTSMDVLW---TGTPVVTL 88 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l-~~-~~~~~g~~~lEAla---~G~PvV~~ 88 (130)
+++++.+.....+.++..+++.| .|.. ..+..+....+...|+++ |- .|...|..+++.+. ..+|||.+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~----~v~~--~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG----RVKT--FLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE----EEEE--ESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC----CEEE--ECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 56677754334556666666544 2332 233455555556789884 54 35556777777664 57899887
Q ss_pred CCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 89 PGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
.+..-...... .-..|..+++.. +.+++.+...++.
T Consensus 78 t~~~~~~~~~~--~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 115 (220)
T 1p2f_A 78 TLLSDDESVLK--GFEAGADDYVTKPFNPEILLARVKRFL 115 (220)
T ss_dssp ESCCSHHHHHH--HHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EcCCCHHHHHH--HHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 65433222221 123588887653 6777777665544
No 226
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=52.00 E-value=38 Score=20.59 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=63.1
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcC-CCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHhc---CC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALG-LDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLWT---GT 83 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g-~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla~---G~ 83 (130)
..+++++.+.......+++.+++.| . +|.... +.++....+. ..|++ +|. .|...|..+++.+.. .+
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~---~v~~~~--~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 88 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIY---DVRVSE--TDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATV 88 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSE---EEEEEC--GGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTC
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCe---EEEEec--cHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCC
Confidence 4577888764445677888888877 4 333322 2233333332 36777 443 354456656655543 78
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhccC
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGTD 128 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~d 128 (130)
|+|...+..-..... -....|..+++.. +.+++.....++++.
T Consensus 89 ~ii~~s~~~~~~~~~--~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 89 PLIAVSDELTSEQTR--VLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CEEEEESCCCHHHHH--HHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHH--HHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999876643322221 1224588887663 778888887776653
No 227
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=51.75 E-value=23 Score=26.61 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=42.4
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTG 82 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G 82 (130)
.+.+++.|+..++-+.+. ..++.+ ++.+. +.. +.+.++++.- ..+|+++-+.|. ...-.+.+|+..|
T Consensus 24 ~~~l~~~~~~~l~av~d~--~~~~~~---~~~~~----~~~--~~~~~~ll~~-~~~D~V~i~tp~~~H~~~~~~al~aG 91 (364)
T 3e82_A 24 APLIRSVPGLNLAFVASR--DEEKVK---RDLPD----VTV--IASPEAAVQH-PDVDLVVIASPNATHAPLARLALNAG 91 (364)
T ss_dssp HHHHHTSTTEEEEEEECS--CHHHHH---HHCTT----SEE--ESCHHHHHTC-TTCSEEEECSCGGGHHHHHHHHHHTT
T ss_pred HHHHhhCCCeEEEEEEcC--CHHHHH---hhCCC----CcE--ECCHHHHhcC-CCCCEEEEeCChHHHHHHHHHHHHCC
Confidence 345667788887766642 222222 23321 111 1234444321 268988655553 3456688999999
Q ss_pred CcEEecC
Q psy15363 83 TPVVTLP 89 (130)
Q Consensus 83 ~PvV~~~ 89 (130)
++|++-+
T Consensus 92 k~Vl~EK 98 (364)
T 3e82_A 92 KHVVVDK 98 (364)
T ss_dssp CEEEECS
T ss_pred CcEEEeC
Confidence 9999864
No 228
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=51.72 E-value=17 Score=27.15 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=27.0
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecCCCc
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 92 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~ 92 (130)
.-|++||||- ++|+|..+|+-+|.-.|...-..
T Consensus 242 ~~~~vlDpF~-GsGtt~~aa~~~~r~~ig~e~~~ 274 (319)
T 1eg2_A 242 PGSTVLDFFA-GSGVTARVAIQEGRNSICTDAAP 274 (319)
T ss_dssp TTCEEEETTC-TTCHHHHHHHHHTCEEEEEESST
T ss_pred CCCEEEecCC-CCCHHHHHHHHcCCcEEEEECCc
Confidence 4689999984 56899999999999999875543
No 229
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=51.64 E-value=70 Score=23.62 Aligned_cols=14 Identities=7% Similarity=0.069 Sum_probs=9.4
Q ss_pred HHHHHhcC-CcEEec
Q psy15363 75 SMDVLWTG-TPVVTL 88 (130)
Q Consensus 75 ~lEAla~G-~PvV~~ 88 (130)
+-|+...| +|++..
T Consensus 137 L~~~~~~G~~~~~Gt 151 (291)
T 3en0_A 137 IRQRVHNGEISLAGT 151 (291)
T ss_dssp HHHHHHTTSSEEEEE
T ss_pred HHHHHHCCCeEEEEe
Confidence 45566778 887755
No 230
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=51.42 E-value=80 Score=24.19 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=59.0
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC------------------CCHHHHHHhhccccEEEcCCCCCC
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV------------------AAKEEHVRRGQLADVCLDTPLCNG 71 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~------------------~~~~~~~~~~~~~Dv~l~~~~~~~ 71 (130)
.|+.++.|+|+ |..-..+.+.++++|+. |+.+.. .+.+.+..+...+|+.+..+ +.-
T Consensus 33 ~~~~~IlIlG~-G~lg~~~~~aa~~lG~~---v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~-e~~ 107 (419)
T 4e4t_A 33 LPGAWLGMVGG-GQLGRMFCFAAQSMGYR---VAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEF-ENV 107 (419)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCE---EEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECC-TTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCE---EEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEcc-CcC
Confidence 47889999996 44334566678888862 333332 23445566666788887333 223
Q ss_pred chHHHHHHhcCCcEEecCCCch----hhh-hHHHHHHhcCCCC---ceecCHHHHHHH
Q psy15363 72 HTTSMDVLWTGTPVVTLPGETL----ASR-VAASQLATLGCPE---LIARTHKEYQDI 121 (130)
Q Consensus 72 g~~~lEAla~G~PvV~~~g~~~----~~r-~~~~~l~~~g~~~---~va~~~~~y~~~ 121 (130)
...+++.+..- .++. ++... ..| ....+++..|++- ...++.++..+.
T Consensus 108 ~~~~~~~l~~~-~~vg-p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~~~ 163 (419)
T 4e4t_A 108 PAASLDFLART-TFVA-PAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAAL 163 (419)
T ss_dssp CHHHHHHHHTT-SEES-SCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSHHHHHTS
T ss_pred CHHHHHHHHcc-CCcC-CCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCHHHHHHH
Confidence 35566666654 2332 22211 122 2456778888873 445677665543
No 231
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=50.89 E-value=12 Score=24.38 Aligned_cols=43 Identities=7% Similarity=-0.130 Sum_probs=30.0
Q ss_pred hHHHHHhhCCCcEEEEeecCcc---cHHHHHHHHHHcCCCCCCEEEecC
Q psy15363 2 SDIFVLKAVPNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNV 47 (130)
Q Consensus 2 ~w~~il~~~P~a~l~i~g~~~~---~~~~l~~~~~~~g~~~~rv~f~g~ 47 (130)
.|..++...|...++++|.+.. -.+.+++.++++|+. |.+...
T Consensus 58 ~l~~l~~~~p~pevliiGtG~~~~~l~p~~~~~l~~~GI~---vE~m~T 103 (128)
T 2fi9_A 58 DISRVLEESDQIEVLLIGTGVELLRLPEELRVLLWEKRIS---SDTMST 103 (128)
T ss_dssp GGHHHHHTGGGCSEEEEECTTSCCCCCHHHHHHHHHTTCE---EEEECH
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCCCCHHHHHHHHHcCCE---EEEeCH
Confidence 3567777787778889997432 236788889999983 555543
No 232
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=50.85 E-value=79 Score=23.98 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=64.5
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCC--------------C--CEEEecCCCHHHHHHhhccccEEEcCCCCCCchH
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQ--------------H--RILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTT 74 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~--------------~--rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~ 74 (130)
|..++.|+|+ |..-..+.+.++++|+.- + ........+.+.+..+.+.+|+....+ +.-+..
T Consensus 23 ~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~-e~~~~~ 100 (403)
T 3k5i_A 23 NSRKVGVLGG-GQLGRMLVESANRLNIQVNVLDADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEI-EHVDTY 100 (403)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESTTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESS-SCSCHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECC-CCCCHH
Confidence 5678899996 443345666778888630 1 112222233456677777788765322 233566
Q ss_pred HHHHHhcCCcEEecCCCch---hhhh-HHHHHHhcCCC--C-ceec--CHHHHHHHHHHh
Q psy15363 75 SMDVLWTGTPVVTLPGETL---ASRV-AASQLATLGCP--E-LIAR--THKEYQDIAIRL 125 (130)
Q Consensus 75 ~lEAla~G~PvV~~~g~~~---~~r~-~~~~l~~~g~~--~-~va~--~~~~y~~~a~~l 125 (130)
+++.+..|+| +..+.+.. ..+. ...+++..|++ . .... +.++..+.+.++
T Consensus 101 ~l~~l~~g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~ 159 (403)
T 3k5i_A 101 ALEEVASEVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQL 159 (403)
T ss_dssp HHHHHTTTSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHHh
Confidence 7777777998 33221211 2232 34578888887 3 3445 788777665553
No 233
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=50.55 E-value=71 Score=23.35 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEE-EcCCCCCCchHHHHHH-hcCCcEEecCCCc--h-hhhhHHH
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPLCNGHTTSMDVL-WTGTPVVTLPGET--L-ASRVAAS 100 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~~~~g~~~lEAl-a~G~PvV~~~g~~--~-~~r~~~~ 100 (130)
..+++..++.|+. .++-..+......+-..+|++ +-++-.. -+.+++++ ..|+||+..+|.. . .-...+.
T Consensus 65 ~~l~~~~~e~Glp----~~te~~d~~~~~~l~~~vd~~~IgA~~~r-n~~ll~~~a~~~~PV~lK~G~~~t~~e~~~Av~ 139 (267)
T 2nwr_A 65 KALRKVKEEFGLK----ITTDIHESWQAEPVAEVADIIQIPAFLCR-QTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVE 139 (267)
T ss_dssp HHHHHHHHHHCCE----EEEECSSGGGHHHHHTTCSEEEECGGGTT-CHHHHHHHHTTTSEEEEECCTTCCGGGGHHHHH
T ss_pred HHHHHHHHhcCCe----EEEecCCHHhHHHHHhcCCEEEECccccc-CHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 3566777888885 444444433332222357888 4333222 23355555 4789999998852 2 2333566
Q ss_pred HHHhcCCCC
Q psy15363 101 QLATLGCPE 109 (130)
Q Consensus 101 ~l~~~g~~~ 109 (130)
.+...|.++
T Consensus 140 ~i~~~GN~~ 148 (267)
T 2nwr_A 140 KLKFGGAKE 148 (267)
T ss_dssp HHHHTTCSS
T ss_pred HHHHcCCCe
Confidence 677778776
No 234
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=50.32 E-value=87 Score=24.42 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEEEcCCCCCCchHHHHHH-hcCCcEEecC
Q psy15363 28 IQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVCLDTPLCNGHTTSMDVL-WTGTPVVTLP 89 (130)
Q Consensus 28 l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~l~~~~~~~g~~~lEAl-a~G~PvV~~~ 89 (130)
+.+.+.+.|++++-|.++..-+.+.-..+++. .|... ++|+..+..+. ..++||+-+.
T Consensus 158 l~~~~~~aG~P~gvv~vv~g~~~~~~~~L~~~~~vd~I~----fTGs~~v~~~a~~~~kpvlelG 218 (464)
T 3k9d_A 158 ISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVIL----ATGGSAMVKAAYSSGTPAIGVG 218 (464)
T ss_dssp HHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTEEEEE----ECSCHHHHHHHTTSSSCEEEBC
T ss_pred HHHHHHHhCCCCCeEEEEeCCCHHHHHHHHhCCCCCEEE----EeCChHHHHHHHhcCCcEEeeC
Confidence 45667899998677877755444333344444 44455 55655555554 4578887665
No 235
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=49.81 E-value=58 Score=25.84 Aligned_cols=87 Identities=9% Similarity=-0.045 Sum_probs=55.6
Q ss_pred cEEEEeecC--cccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCCcEEec
Q psy15363 13 SILWLLKFP--AVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGTPVVTL 88 (130)
Q Consensus 13 a~l~i~g~~--~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~PvV~~ 88 (130)
-.+-|+|.- ..+...+++++++.|+. -.+.|.|..+.+|+..+ ..|++-+-.+++ .+..+.+.| -.|+|.+..
T Consensus 221 ~~VNIiG~~~~~gD~~eik~lL~~~Gi~-v~~~~~g~~t~~ei~~~-~~A~~niv~~~~-~~~~~A~~Le~~~GiP~i~~ 297 (492)
T 3u7q_A 221 YDVAIIGDYNIGGDAWSSRILLEEMGLR-CVAQWSGDGSISEIELT-PKVKLNLVHCYR-SMNYISRHMEEKYGIPWMEY 297 (492)
T ss_dssp TEEEEEEECCBTTTTHHHHHHHHHTTCE-EEEEEETTCCHHHHHHG-GGCSEEEESCHH-HHHHHHHHHHHHHCCCEEEC
T ss_pred CcEEEECCCCChhhHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHhh-hcCcEEEEEChH-HHHHHHHHHHHHhCCceEec
Confidence 356677732 12357899999999996 56677888888888764 477777644432 234555555 479999976
Q ss_pred CCCchhhhhHHHHHHh
Q psy15363 89 PGETLASRVAASQLAT 104 (130)
Q Consensus 89 ~g~~~~~r~~~~~l~~ 104 (130)
+ .+--.-+...++.
T Consensus 298 ~--p~G~~~T~~~L~~ 311 (492)
T 3u7q_A 298 N--FFGPTKTIESLRA 311 (492)
T ss_dssp C--CSSHHHHHHHHHH
T ss_pred C--ccCHHHHHHHHHH
Confidence 4 2333334444444
No 236
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=49.78 E-value=57 Score=22.07 Aligned_cols=105 Identities=12% Similarity=0.038 Sum_probs=56.0
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEec-CCCHHHHHHhhc--cccEEE-cCC-CCCCchHHHHHHh---cCCcE
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQ--LADVCL-DTP-LCNGHTTSMDVLW---TGTPV 85 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g-~~~~~~~~~~~~--~~Dv~l-~~~-~~~~g~~~lEAla---~G~Pv 85 (130)
+++++.+....++.++..+.+.| .+...+ ..+.++....+. ..|+++ |.. |...|..+++.+. ..+||
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~----~~~vv~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 78 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADP----ELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRC 78 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCT----TEEEEEEESSHHHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEE
T ss_pred EEEEEcCCHHHHHHHHHHHhcCC----CcEEEEEECCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 56777754334667777777654 122222 223344444443 378884 532 5555777776664 47899
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHH
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIR 124 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~ 124 (130)
|.+.+..-...... .-..|..+++.. +.+++.+...+
T Consensus 79 i~lt~~~~~~~~~~--~~~~Ga~~~l~Kp~~~~~L~~~i~~ 117 (225)
T 3c3w_A 79 LILTSYTSDEAMLD--AILAGASGYVVKDIKGMELARAVKD 117 (225)
T ss_dssp EEGGGSSSHHHHHH--HHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHH--HHHCCCCEEEECCCCHHHHHHHHHH
Confidence 98865433222221 113477776653 44555554443
No 237
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=49.38 E-value=45 Score=20.76 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=61.6
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEE-EcCC-CCCCchHHHHHHh---cCCc
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVC-LDTP-LCNGHTTSMDVLW---TGTP 84 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~-l~~~-~~~~g~~~lEAla---~G~P 84 (130)
..+++++.+.......+++.+++.|. +|... .+.++....+.. .|++ +|.. +...|..+++.+. ..+|
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~p 77 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGF---TVSSF--ASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLP 77 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTC---EEEEE--SCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCc---EEEEE--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCC
Confidence 35677787644456778888888775 34433 344565555543 6877 4543 4445666666654 4799
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
||.+.+..-..... -....|..+++.. +.+++.....++
T Consensus 78 ii~ls~~~~~~~~~--~~~~~g~~~~l~kP~~~~~L~~~i~~~ 118 (155)
T 1qkk_A 78 MILVTGHGDIPMAV--QAIQDGAYDFIAKPFAADRLVQSARRA 118 (155)
T ss_dssp EEEEECGGGHHHHH--HHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCCChHHHH--HHHhcCCCeEEeCCCCHHHHHHHHHHH
Confidence 99886543222221 1223588887653 566665555443
No 238
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=49.19 E-value=42 Score=20.30 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=62.3
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cCC-C-----CCCchHHHHHHh--
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DTP-L-----CNGHTTSMDVLW-- 80 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~~-~-----~~~g~~~lEAla-- 80 (130)
..+++++.+.......+++.+++.|. +|... .+.++....+. ..|+++ |.. + ...|..+++.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~ 77 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFS---KVITL--SSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ 77 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSS---EEEEE--CCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCc---EEEEe--CCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh
Confidence 35777887643446677777777664 34433 33355444443 368874 532 4 345666666554
Q ss_pred -cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 81 -TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 81 -~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
..+|+|.+.+..-..... -....|..+++.. +.+++.+...++.+
T Consensus 78 ~~~~~ii~ls~~~~~~~~~--~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 78 YRDLPVVLFTAYADIDLAV--RGIKEGASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp CTTCCEEEEEEGGGHHHHH--HHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CcCCCEEEEECCCCHHHHH--HHHHcCchheeeCCCCHHHHHHHHHHHHH
Confidence 478999876543222221 2224588886653 67777777766554
No 239
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1
Probab=49.15 E-value=80 Score=23.65 Aligned_cols=83 Identities=12% Similarity=-0.019 Sum_probs=47.2
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHH-----------HHHHhhccccEEEcCCCCCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKE-----------EHVRRGQLADVCLDTPLCNG 71 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~-----------~~~~~~~~~Dv~l~~~~~~~ 71 (130)
..+++.+.|+..++-+.+..+ +...+.+.+.|+. .+.++.+.+ +.......+|+.++..|...
T Consensus 16 ~~r~L~~~p~~elvav~d~~~--~~~~~~a~~~g~~----~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~~aTp~~~ 89 (340)
T 1b7g_O 16 VADAIIKQPDMKLVGVAKTSP--NYEAFIAHRRGIR----IYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVVDTTPNGV 89 (340)
T ss_dssp HHHHHHTCTTEEEEEEECSSC--SHHHHHHHHTTCC----EECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEEECCSTTH
T ss_pred HHHHHHcCCCCEEEEEEcCCh--HHHHHHHHhcCcc----eecCcCHHHHhcccccccccCHhHhhcCCCEEEECCCCch
Confidence 467778889999887775322 2334455555542 232211111 11122347999988766443
Q ss_pred ch-HHHHHHhcCCcEEecCCC
Q psy15363 72 HT-TSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 72 g~-~~lEAla~G~PvV~~~g~ 91 (130)
.. ..-.++..|+++|...+.
T Consensus 90 s~~~a~~~~~aG~kvV~~sa~ 110 (340)
T 1b7g_O 90 GAQYKPIYLQLQRNAIFQGGE 110 (340)
T ss_dssp HHHHHHHHHHTTCEEEECTTS
T ss_pred hHHHHHHHHHcCCeEEEeCCC
Confidence 33 333456789999988765
No 240
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=49.10 E-value=43 Score=20.37 Aligned_cols=106 Identities=10% Similarity=0.050 Sum_probs=61.1
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc---ccEE-EcCC-CCCCchHHHHHHhc---C
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL---ADVC-LDTP-LCNGHTTSMDVLWT---G 82 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~---~Dv~-l~~~-~~~~g~~~lEAla~---G 82 (130)
|..+++++.+.......+++.+++.|. +|.... +..+....+.. .|++ +|.. +...|..+++.+.. .
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~ 88 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGA---EVTVHP--SGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQ 88 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCC---EEEEeC--CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCC
Confidence 567888887643456778888888775 344332 34555555543 7887 4543 44467778887754 6
Q ss_pred CcEEecC-CCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 83 TPVVTLP-GETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 83 ~PvV~~~-g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
+|+|.+. +..-... . +.+ ..+++.. +.+++.....++.+
T Consensus 89 ~~ii~ls~~~~~~~~-~----~~~-~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 89 PSVLILTTGRHELIE-S----SEH-NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp CEEEEEESCC--CCC-C----SSS-CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCCHHH-H----HHH-HHheeeCCCCHHHHHHHHHHHHH
Confidence 8888776 4322111 1 111 3344432 67777777666554
No 241
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.79 E-value=49 Score=21.01 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=41.5
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.+..+++-|.....+..|++++..+|-. |...++. .++.++.. ...+..+..|...|+|||..
T Consensus 24 ~g~~i~itG~~~~~r~~l~~~i~~~Gg~-----v~~~~s~--------~~ThLI~~--~~~~~K~~~A~~~gi~IV~~ 86 (129)
T 2d8m_A 24 QGVVVVLSGFQNPFRSELRDKALELGAK-----YRPDWTR--------DSTHLICA--FANTPKYSQVLGLGGRIVRK 86 (129)
T ss_dssp TTEEEEEESCCTTHHHHHHHHHHHTTEE-----EESSCCT--------TCCEEEES--SSSCHHHHHHHHHTCEEEET
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHHcCCE-----EeCCcCC--------CCeEEEec--CCCChHHHHHHHCCCcEecH
Confidence 4567777775444678899999999842 4444432 34555533 23456777888899999974
No 242
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=48.69 E-value=41 Score=20.05 Aligned_cols=107 Identities=7% Similarity=0.010 Sum_probs=62.6
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh-----cCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW-----TGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla-----~G~ 83 (130)
.+++++.+....+..+++.+++.|. +|.... +.++....+. ..|+. +|. .+...|..+++.+. ..+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~ 78 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGF---QADYVM--SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTS 78 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTE---EEEEES--SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCC---CEEEEC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCC
Confidence 5677887644456788888888775 344333 4455545443 36887 454 35556777777765 458
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|+|.+.+..-... ...+ ..|..+++.. +.+++.+......+
T Consensus 79 ~ii~~s~~~~~~~-~~~~--~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 79 KFVAVSGFAKNDL-GKEA--CELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp EEEEEECC-CTTC-CHHH--HHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CEEEEECCcchhH-HHHH--HHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 8888765433222 1111 2256665553 67777777665443
No 243
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=48.62 E-value=63 Score=25.62 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=50.5
Q ss_pred CcEEEEeecCc------ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHH--hcCC
Q psy15363 12 NSILWLLKFPA------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVL--WTGT 83 (130)
Q Consensus 12 ~a~l~i~g~~~------~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAl--a~G~ 83 (130)
+-.+-|+|.-. .+...+++++++.|+. -...|.|..+.+|+.. +..|++-+-.+++. +..+.+.| -.|+
T Consensus 166 ~~~VNiiG~~~~~~~~~gD~~eik~lL~~~Gi~-v~~~~~gg~~~~ei~~-~~~A~~niv~~~~~-~~~~A~~Le~~~Gi 242 (511)
T 2xdq_B 166 TPSVNIIGITTLGFHNQHDCRELKQLMADLGIQ-VNLVIPAAATVHDLQR-LPQAWFNLVPYREI-GGLTAQYLEREFGQ 242 (511)
T ss_dssp SCEEEEEEECTTCTTHHHHHHHHHHHHHHHTCE-EEEEEETTCCTTTGGG-GGGSSEEECCCTTS-SHHHHHHHHHHHCC
T ss_pred CCceEEEeccCCCCCCccHHHHHHHHHHHCCCe-EEEEECCcCcHHHHHh-hccCCEEEEEchhh-hHHHHHHHHHHhCC
Confidence 34677887321 2346899999999996 4557777777777754 56778877666653 34555555 4699
Q ss_pred cEEec
Q psy15363 84 PVVTL 88 (130)
Q Consensus 84 PvV~~ 88 (130)
|.+..
T Consensus 243 P~i~~ 247 (511)
T 2xdq_B 243 PSVRI 247 (511)
T ss_dssp CEECC
T ss_pred CeEee
Confidence 99964
No 244
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=48.61 E-value=64 Score=22.31 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=38.6
Q ss_pred HHHhhccccEEEcCCCCCCchH--HHHHHh------cCCcEEecCC-CchhhhhH--HHHHHhcCC-C----C--ceecC
Q psy15363 53 HVRRGQLADVCLDTPLCNGHTT--SMDVLW------TGTPVVTLPG-ETLASRVA--ASQLATLGC-P----E--LIART 114 (130)
Q Consensus 53 ~~~~~~~~Dv~l~~~~~~~g~~--~lEAla------~G~PvV~~~g-~~~~~r~~--~~~l~~~g~-~----~--~va~~ 114 (130)
...+...+|.|+ .+|-+.||- ++|++. .++|||.+.. .+|...+. ..++.. |. + + .+++|
T Consensus 102 k~~m~~~sda~I-alPGG~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~-Gfi~~~~~~~i~~~d~ 179 (189)
T 3sbx_A 102 KQVMEDRANAFI-TLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADT-GYVSRTAMERLIVVDN 179 (189)
T ss_dssp HHHHHHHCSEEE-ECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHT-TSSCHHHHHHEEEESS
T ss_pred HHHHHHHCCEEE-EeCCCcchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHC-CCCCHHHcCeEEEeCC
Confidence 345567899987 455444543 667764 5899999976 44444332 122222 22 1 1 35677
Q ss_pred HHHHHHH
Q psy15363 115 HKEYQDI 121 (130)
Q Consensus 115 ~~~y~~~ 121 (130)
+++.++.
T Consensus 180 ~ee~~~~ 186 (189)
T 3sbx_A 180 LDDALQA 186 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
No 245
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Probab=48.51 E-value=93 Score=24.11 Aligned_cols=83 Identities=16% Similarity=0.072 Sum_probs=53.6
Q ss_pred HHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH--------------HHHHHhhccccEEEcCCCCC
Q psy15363 5 FVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK--------------EEHVRRGQLADVCLDTPLCN 70 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~--------------~~~~~~~~~~Dv~l~~~~~~ 70 (130)
++.++.++.+++-+.. +...+.+.+++++++. +.+........ .++. ....+|+++...+-.
T Consensus 21 dVi~~~~~~~vvaL~a-~~n~~~l~~q~~~f~p--~~v~v~~~~~~~~~l~~~~~G~~~l~el~-~~~~~D~Vv~AivG~ 96 (376)
T 3a06_A 21 DVLKKVKGIRLIGISF-HSNLELAFKIVKEFNV--KNVAITGDVEFEDSSINVWKGSHSIEEML-EALKPDITMVAVSGF 96 (376)
T ss_dssp HHHHHSCSEEEEEEEE-SSCHHHHHHHHHHHTC--CEEEECSSCCCCCSSSEEEESTTHHHHHH-HHHCCSEEEECCCST
T ss_pred HHHHhCCCeEEEEEEc-cCCHHHHHHHHHHcCC--CEEEEccHHHHHHHHHHHccCHHHHHHHh-cCCCCCEEEEEeeCH
Confidence 4455567787776643 3556788999999884 34433332221 3333 234699999877644
Q ss_pred -CchHHHHHHhcCCcEEecCCC
Q psy15363 71 -GHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 71 -~g~~~lEAla~G~PvV~~~g~ 91 (130)
|=..+++|+-+|+-|..-..+
T Consensus 97 aGL~ptlaAi~aGK~vaLANKE 118 (376)
T 3a06_A 97 SGLRAVLASLEHSKRVCLANKE 118 (376)
T ss_dssp THHHHHHHHHHHCSEEEECCSH
T ss_pred HHHHHHHHHHHCCCEEEEeChH
Confidence 445689999999999985444
No 246
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=48.22 E-value=78 Score=23.13 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=56.5
Q ss_pred EEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC-----CHHHHHHhhcc---ccEEEcCCCCCCch------HHHHHHh
Q psy15363 15 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-----AKEEHVRRGQL---ADVCLDTPLCNGHT------TSMDVLW 80 (130)
Q Consensus 15 l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~-----~~~~~~~~~~~---~Dv~l~~~~~~~g~------~~lEAla 80 (130)
+-+++.+|..-..+-.++.+.|+-...++=+|.. +..|++.++.. .++.+ -+-+.++. ..+.+ +
T Consensus 147 va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~-l~~E~~~~~~~~~~~~~~~-~ 224 (288)
T 1oi7_A 147 VGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVV-LIGEIGGSDEEEAAAWVKD-H 224 (288)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEE-EEECSSSSHHHHHHHHHHH-H
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEE-EEEeeCCCHHHHHHHHHHh-c
Confidence 3344433333345667788878765667767654 35677777744 33332 12233332 23333 6
Q ss_pred cCCcEEecC-CCch-hhh---hH--------------HHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 81 TGTPVVTLP-GETL-ASR---VA--------------ASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 81 ~G~PvV~~~-g~~~-~~r---~~--------------~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
.++|||++. |.+. .++ ++ .+.++..|. +.+++.+++.+.+.++.
T Consensus 225 ~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv--~~~~~~~el~~~~~~~~ 287 (288)
T 1oi7_A 225 MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGI--PVADTIDEIVELVKKAL 287 (288)
T ss_dssp CCSCEEEEESCC------------------CCSHHHHHHHHHHHTC--CBCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCC--eEeCCHHHHHHHHHHHh
Confidence 899999984 3332 111 11 112222222 45678888888777654
No 247
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=48.18 E-value=44 Score=20.30 Aligned_cols=108 Identities=9% Similarity=0.088 Sum_probs=60.4
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cCC-CCCCchHHHHHHhc-----
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DTP-LCNGHTTSMDVLWT----- 81 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~~-~~~~g~~~lEAla~----- 81 (130)
...+++++.+.....+.+++.+++.|. +|.... +.++....+. ..|+.+ |.. +...|..+++.+..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 80 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGF---HIISAD--SGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQ 80 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCe---EEEEeC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccC
Confidence 356777887644456788888888775 344333 3355544443 368874 543 44567777877754
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
.+|||.+.+..-..... . ....|..+++.. +.+++.+...++
T Consensus 81 ~~pii~~s~~~~~~~~~-~-~~~~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 81 GIAIVMLTAKNAPDAKM-I-GLQEYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp TEEEEEEECTTCCCCSS-T-TGGGGEEEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHH-H-HHhcCccEEEeCCCCHHHHHHHHHHH
Confidence 57888775432111110 0 112356665543 566666655444
No 248
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=48.13 E-value=25 Score=24.86 Aligned_cols=68 Identities=16% Similarity=0.064 Sum_probs=39.3
Q ss_pred HhhccccEEEcCCCCCCchH--HHHHHhc------CCcEEecCCCchhhhhHH---HHHHhcCC-C-----C-ceecCHH
Q psy15363 55 RRGQLADVCLDTPLCNGHTT--SMDVLWT------GTPVVTLPGETLASRVAA---SQLATLGC-P-----E-LIARTHK 116 (130)
Q Consensus 55 ~~~~~~Dv~l~~~~~~~g~~--~lEAla~------G~PvV~~~g~~~~~r~~~---~~l~~~g~-~-----~-~va~~~~ 116 (130)
.+...+|.|+- +|-+.|+- ++|++.. ++||+.+....+...+-. .++. -|. + - .+++|++
T Consensus 105 ~~~~~sda~Vv-lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~g~w~~l~~~l~~~~~-~Gfi~~~~~~~~~~~d~~e 182 (215)
T 2a33_A 105 EMAKHSDAFIA-LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVE-EGFISPTAREIIVSAPTAK 182 (215)
T ss_dssp HHHHTCSEEEE-CSCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGGTTHHHHHHHHHHHH-HTSSCHHHHTTEEEESSHH
T ss_pred HHHHhCCEEEE-eCCCCchHHHHHHHHHHHHhCCCCCCeEEecCcchhHHHHHHHHHHHH-cCCCCHHHCCeEEEeCCHH
Confidence 34567898863 44444543 6777765 899999976532222221 1121 132 1 1 4678999
Q ss_pred HHHHHHHH
Q psy15363 117 EYQDIAIR 124 (130)
Q Consensus 117 ~y~~~a~~ 124 (130)
+.++...+
T Consensus 183 e~~~~l~~ 190 (215)
T 2a33_A 183 ELVKKLEE 190 (215)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 88887654
No 249
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=48.03 E-value=44 Score=20.22 Aligned_cols=109 Identities=10% Similarity=0.005 Sum_probs=64.1
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cCC-CCCCchHHHHHHh---cCCc
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DTP-LCNGHTTSMDVLW---TGTP 84 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~~-~~~~g~~~lEAla---~G~P 84 (130)
..+++++.+.......+++.+++.|. .|..... .++....+. ..|+++ |.. +...|..+++.+. ..+|
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~---~v~~~~~--~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 81 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFP---EVWSAGD--GEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPY 81 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCS---CEEEESS--HHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCc---EEEEECC--HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCc
Confidence 35777887644456778888887543 4544443 344444433 478884 433 4556777776655 3688
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
+|.+.+..-...... ....|..+++.. +.+++.+...++.+
T Consensus 82 ii~~s~~~~~~~~~~--~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 82 VIVISAFSEMKYFIK--AIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp EEECCCCCCHHHHHH--HHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred EEEEecCcChHHHHH--HHhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 988866543222221 224588886653 77787777766543
No 250
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Probab=47.65 E-value=52 Score=22.50 Aligned_cols=66 Identities=11% Similarity=0.194 Sum_probs=43.9
Q ss_pred HHHHHhhCCCc-EEEEeecC---cc----c---------H-HHHHHHHHHcCCCCCCEEEecCCCH--------HHHHHh
Q psy15363 3 DIFVLKAVPNS-ILWLLKFP---AV----G---------E-ANIQATAQALGLDQHRILFSNVAAK--------EEHVRR 56 (130)
Q Consensus 3 w~~il~~~P~a-~l~i~g~~---~~----~---------~-~~l~~~~~~~g~~~~rv~f~g~~~~--------~~~~~~ 56 (130)
.+.+++.+|+. ++.|.|+. |. . + ..+++++.+.|++++|+...|+-.. .+-...
T Consensus 81 ia~~l~~~~~~~~i~I~GhTD~~g~~~~~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G~~~P~~~n~t~~~r~~ 160 (193)
T 3s0y_A 81 IAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSYGSTNPIAPNDSLENRMK 160 (193)
T ss_dssp HHHHHHTSCTTCEEEEEECCCSCCCTTSSCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECTTSCCSSCSCSHHHHHH
T ss_pred HHHHHHhCCCceEEEEEEEeCCCCCccccchhHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEECCcCCCCCCcChhhHhh
Confidence 46788899964 89999953 12 1 1 2466677788999899998876421 233344
Q ss_pred hccccEEEcCCC
Q psy15363 57 GQLADVCLDTPL 68 (130)
Q Consensus 57 ~~~~Dv~l~~~~ 68 (130)
=+.++|.+.+.+
T Consensus 161 NRRVei~i~~~~ 172 (193)
T 3s0y_A 161 NNRVEIFFSTDA 172 (193)
T ss_dssp HTCEEEEEECCC
T ss_pred CCCEEEEEEcCh
Confidence 577888875544
No 251
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=47.53 E-value=59 Score=21.92 Aligned_cols=111 Identities=5% Similarity=-0.060 Sum_probs=60.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhh--ccccEE-EcC-CCCCCchHHHHHHh----cC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRG--QLADVC-LDT-PLCNGHTTSMDVLW----TG 82 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~--~~~Dv~-l~~-~~~~~g~~~lEAla----~G 82 (130)
..+++++.+....+..++..+++. |. .+.....-..++...++ ...|+. +|- .|...|..+++.+. ..
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~---~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 83 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPL---ALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPD 83 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSE---EEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTT
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCc---eEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCC
Confidence 457788876444567788888743 43 23222222233343322 347888 454 36556777776654 47
Q ss_pred CcEEecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhcc
Q psy15363 83 TPVVTLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT 127 (130)
Q Consensus 83 ~PvV~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~ 127 (130)
+|||.+.+..-... .......|..+++. .+.+++.+...++.+
T Consensus 84 ~~ii~lt~~~~~~~--~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 84 AKEVIINCPQDIEH--KLLFKWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp CEEEEEEECTTCCH--HHHTTSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred CcEEEEECCcchhH--HHHHHHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 89887754322111 11122346667665 367777776665543
No 252
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=47.50 E-value=14 Score=26.21 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=26.7
Q ss_pred CcEEEEeecCcccHHHHHHHHH-HcCCCCCCEEEecCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQ-ALGLDQHRILFSNVA 48 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~-~~g~~~~rv~f~g~~ 48 (130)
+..+++.| +.+..+.+++.++ ++|++.++|++-++-
T Consensus 191 ~~~vy~CG-P~~m~~av~~~l~~~~G~~~~~i~~e~fw 227 (252)
T 2gpj_A 191 EPAVWIAC-EFNSMRALRRHFKQAHALPKSHFYTSSYW 227 (252)
T ss_dssp CEEEEEEE-EHHHHHHHHHHHHHHCCCCGGGEEEEEEE
T ss_pred CcEEEEEc-CHHHHHHHHHHHHHhcCCCHHHeEEEEEc
Confidence 45677777 3556677888777 799988899987664
No 253
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=47.21 E-value=59 Score=21.47 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=53.5
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCC--CCEEEec----CCCHHH-HHHhhccc-----cEEEcCCCCC-Cc-hHHHHH
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQ--HRILFSN----VAAKEE-HVRRGQLA-----DVCLDTPLCN-GH-TTSMDV 78 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~--~rv~f~g----~~~~~~-~~~~~~~~-----Dv~l~~~~~~-~g-~~~lEA 78 (130)
.++.++.. .....++..++.+|+.. +.+.... ..|..+ +..+.... +++. .+ +. +-+.-|
T Consensus 116 ~~~~i~t~--~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~----vGD~~~~Di~~a 189 (234)
T 3u26_A 116 YHVGMITD--SDTEQAMAFLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVY----VGDNPVKDCGGS 189 (234)
T ss_dssp SEEEEEES--SCHHHHHHHHHHTTCGGGCSEEEEHHHHTBCTTSHHHHHHHHHHHTCCGGGEEE----EESCTTTTHHHH
T ss_pred CcEEEEEC--CCHHHHHHHHHHcCcHHHcceeEeccccCCCCcCHHHHHHHHHHcCCCchhEEE----EcCCcHHHHHHH
Confidence 56667763 34456677788888751 3333321 223222 22222222 2221 12 11 336667
Q ss_pred HhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 79 LWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 79 la~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
-.+|.++|.....+..... ...+.++.++.++..+...++..
T Consensus 190 ~~aG~~~~~v~~~~~~~~~-------~~~a~~~~~~~~el~~~l~~~~~ 231 (234)
T 3u26_A 190 KNLGMTSILLDRKGEKREF-------WDKCDFIVSDLREVIKIVDELNG 231 (234)
T ss_dssp HTTTCEEEEECSSSTTGGG-------GGGCSEEESSTHHHHHHHHHHC-
T ss_pred HHcCCEEEEECCCCCcccc-------ccCCCEeeCCHHHHHHHHHHHhh
Confidence 7889988876433211111 11467888999998888777654
No 254
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, P protein structure initiative, joint center for structural G hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=47.08 E-value=22 Score=24.90 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=27.6
Q ss_pred CCCcEEEEeecCccc--------------HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 10 VPNSILWLLKFPAVG--------------EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~--------------~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.|+++++|+|.. |+ -+.|.+++.+.|++.+.+.++..+
T Consensus 48 ~~~a~lm~VGea-PG~~e~~~G~pF~g~sG~~L~~~L~~~Gl~r~~~yitn~v 99 (204)
T 1vk2_A 48 NLDTRIVFVGEG-PGEEEDKTGRPFVGRAGMLLTELLRESGIRREDVYICNVV 99 (204)
T ss_dssp CTTCSEEEEESC-CCHHHHHHTCSSCSHHHHHHHHHHHHTTCCGGGSEEEESC
T ss_pred CCCCCEEEEECC-CCcchhhcCCCCcChHHHHHHHHHHHcCCCcCcEEEeccc
Confidence 478999999963 22 247888899999986666666544
No 255
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=47.00 E-value=1e+02 Score=24.11 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCC---HHHHHHhhcc---ccE---EEcCCCCCC-chHHHHHHhcCCcEEecCC-Cch
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAA---KEEHVRRGQL---ADV---CLDTPLCNG-HTTSMDVLWTGTPVVTLPG-ETL 93 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~---~~~~~~~~~~---~Dv---~l~~~~~~~-g~~~lEAla~G~PvV~~~g-~~~ 93 (130)
-..+-.++.+.|+-...++=+|..+ ..|++.++.. .++ |+.++..+. =...++..+.++|||++.. .+.
T Consensus 162 ~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~d~l~~~~~D~~t~~I~l~~E~i~~~~~f~~~a~~~~~~KPVv~~k~G~~~ 241 (457)
T 2csu_A 162 GAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPIIALKAGKSE 241 (457)
T ss_dssp HHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEEESCCSCHHHHHHHHHHHHHHSCEEEEECC---
T ss_pred HHHHHHHHHhcCCCeeEEEECCCcCCCCHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence 3456677788877656777777654 5777777744 233 333333211 1345666678999999853 332
Q ss_pred hhh---------------hHHHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 94 ASR---------------VAASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 94 ~~r---------------~~~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
.++ .-.+.++..|+ ...++.+++.+.+..|.
T Consensus 242 ~g~~aa~~Htgalag~~~~~~AafRqaGv--~~v~~~~El~~~~~~l~ 287 (457)
T 2csu_A 242 SGARAASSHTGSLAGSWKIYEAAFKQSGV--LVANTIDEMLSMARAFS 287 (457)
T ss_dssp ---------------CHHHHHHHHHHTTC--EEESSHHHHHHHHTTTT
T ss_pred cccchhhcccCccCCcHHHHHHHHHhCCC--eEECCHHHHHHHHHHhc
Confidence 211 11223444444 24567777766655443
No 256
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=46.99 E-value=42 Score=19.70 Aligned_cols=107 Identities=8% Similarity=0.095 Sum_probs=59.7
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcCC-CCCCchHHHHHHh---cCCcE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDTP-LCNGHTTSMDVLW---TGTPV 85 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~~-~~~~g~~~lEAla---~G~Pv 85 (130)
.+++++.+....+..+++.+++.|.. -+... .+.++....+. ..|+. +|.. |...|...++.+. ..+|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~--vv~~~--~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~i 78 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYE--VAGEA--TNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKI 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE--EEEEE--SSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcE--EEEEE--CCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeE
Confidence 35677775433466778888876652 12222 22334333332 36887 4543 4445777777664 47898
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
|...+..-..... -....|..+++.. +.+++.+...++
T Consensus 79 i~~s~~~~~~~~~--~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 79 IVCSAMGQQAMVI--EAIKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp EEEECTTCHHHHH--HHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHH--HHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 8776543222221 1224588887653 667777666554
No 257
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=46.79 E-value=35 Score=25.13 Aligned_cols=78 Identities=8% Similarity=0.009 Sum_probs=41.5
Q ss_pred CCCcEEEEeecCcc-cHHHHHHHHHHcCC------CCCC--EEEecCCCHHHHHHhhc--c-ccEEEcCC-CCCCchHHH
Q psy15363 10 VPNSILWLLKFPAV-GEANIQATAQALGL------DQHR--ILFSNVAAKEEHVRRGQ--L-ADVCLDTP-LCNGHTTSM 76 (130)
Q Consensus 10 ~P~a~l~i~g~~~~-~~~~l~~~~~~~g~------~~~r--v~f~g~~~~~~~~~~~~--~-~Dv~l~~~-~~~~g~~~l 76 (130)
.|+.+.+++|-.+. ....++ .+.+.|. ++++ -.+.|.--+..+..+.. . +|+.++.. +....-.+.
T Consensus 11 ~~~~~vvV~Gasg~~G~~~~~-~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~~v~ 89 (297)
T 2yv2_A 11 DSETRVLVQGITGREGSFHAK-AMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVY 89 (297)
T ss_dssp STTCEEEEETTTSHHHHHHHH-HHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHH-HHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHHHHH
Confidence 47889888885332 333344 4444454 2211 01111100112222233 3 89997654 445567789
Q ss_pred HHHhcCCc-EEec
Q psy15363 77 DVLWTGTP-VVTL 88 (130)
Q Consensus 77 EAla~G~P-vV~~ 88 (130)
|+...|+| +|..
T Consensus 90 ea~~~Gi~~vVi~ 102 (297)
T 2yv2_A 90 EAVDAGIRLVVVI 102 (297)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHHCCCCEEEEE
Confidence 99999999 5554
No 258
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=46.38 E-value=81 Score=25.02 Aligned_cols=73 Identities=14% Similarity=-0.005 Sum_probs=41.6
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC---H-HHHHH-------------hhccccEEEcCC--CCCCc
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA---K-EEHVR-------------RGQLADVCLDTP--LCNGH 72 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~---~-~~~~~-------------~~~~~Dv~l~~~--~~~~g 72 (130)
.-++.++|-++.....+.+++.+.|. +|.....-+ . +.+.. +...+|+++-+. |...
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~---~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~- 94 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGH---TVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGM- 94 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTS-
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCC---EEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCC-
Confidence 35677888767777778888888884 455544321 1 12211 113478776554 3322
Q ss_pred hHHHHHHhcCCcEEec
Q psy15363 73 TTSMDVLWTGTPVVTL 88 (130)
Q Consensus 73 ~~~lEAla~G~PvV~~ 88 (130)
-.+.+|...|+||+.-
T Consensus 95 p~l~~a~~~gi~v~~~ 110 (524)
T 3hn7_A 95 DVIEYMLDTGLRYTSG 110 (524)
T ss_dssp HHHHHHHHHTCCEEEH
T ss_pred HHHHHHHHCCCcEEEH
Confidence 2345666777777753
No 259
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=46.03 E-value=57 Score=26.02 Aligned_cols=70 Identities=13% Similarity=-0.027 Sum_probs=40.8
Q ss_pred HHHhhccccEEEcCCCCCCchH--HHHHHh---------cCCcEEecCC----CchhhhhHHHHHHhcC---CCC--cee
Q psy15363 53 HVRRGQLADVCLDTPLCNGHTT--SMDVLW---------TGTPVVTLPG----ETLASRVAASQLATLG---CPE--LIA 112 (130)
Q Consensus 53 ~~~~~~~~Dv~l~~~~~~~g~~--~lEAla---------~G~PvV~~~g----~~~~~r~~~~~l~~~g---~~~--~va 112 (130)
...+...+|.|+ .+|-+.||- ++|++. .++|||.+.. .+|.. +-.-+-+.++ ... .++
T Consensus 239 K~~mv~~SDAfI-aLPGG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~-Ll~~l~~~l~~~~~~~~iiv~ 316 (460)
T 3bq9_A 239 LEAFVRCAHGIV-IFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEA-LDEFIGATIGDEARQLYKIII 316 (460)
T ss_dssp HHHHHHHCSEEE-ECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHH-HHHHHHHHTCTTGGGGCEEEE
T ss_pred HHHHHHhCCEEE-EcCCCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhH-HHHHHHHHhcchhhcCcEEEe
Confidence 344567899987 456555654 678877 4899999862 23322 2111111122 223 357
Q ss_pred cCHHHHHHHHHH
Q psy15363 113 RTHKEYQDIAIR 124 (130)
Q Consensus 113 ~~~~~y~~~a~~ 124 (130)
+|+++.++...+
T Consensus 317 ddpeEal~~l~~ 328 (460)
T 3bq9_A 317 DDPAAVAQHMHA 328 (460)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999987776654
No 260
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=45.94 E-value=68 Score=21.81 Aligned_cols=108 Identities=16% Similarity=0.064 Sum_probs=63.5
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHhc--CCcEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLWT--GTPVV 86 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla~--G~PvV 86 (130)
.+++++.+....++.++..+++.|. .|..... .++....+. ..|++ +|- .|...|..+++.+.. .+|||
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~~--~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii 80 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGF---DTAVIGD--GTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIV 80 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEECC--GGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCC---EEEEECC--HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEE
Confidence 4677887643456778888887775 2544332 233333332 47888 454 355567777777753 78998
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCcee--cCHHHHHHHHHHhcc
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIA--RTHKEYQDIAIRLGT 127 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va--~~~~~y~~~a~~l~~ 127 (130)
.+.+..-...... .-..|..+++. -+.+++.+...++++
T Consensus 81 ~lt~~~~~~~~~~--~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 81 MLTAKTDTVDVVL--GLESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp EEEETTCCSCHHH--HHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHH--HHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 7754322221111 22458888765 367788777766554
No 261
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=45.68 E-value=50 Score=20.17 Aligned_cols=107 Identities=10% Similarity=0.058 Sum_probs=60.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcCC-CCCCchHHHHHHhc--CCcE
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDTP-LCNGHTTSMDVLWT--GTPV 85 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~~-~~~~g~~~lEAla~--G~Pv 85 (130)
..+++++.+.......++..+++.|. +|... .+..+....+. ..|++ +|.. |...|..+++.+.. .+|+
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~i 78 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGI---SIDLA--YNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC---EEEEE--SSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCC---EEEEE--CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCE
Confidence 45777887643346677887876664 34332 23344444433 36887 4542 44457777777753 6898
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
|...+..-..... ..+ ..|..+++.. +.+++.+...++
T Consensus 79 i~ls~~~~~~~~~-~~~-~~ga~~~l~KP~~~~~L~~~l~~~ 118 (136)
T 2qzj_A 79 VYMTYINEDQSIL-NAL-NSGGDDYLIKPLNLEILYAKVKAI 118 (136)
T ss_dssp EEEESCCCHHHHH-HHH-HTTCCEEEESSCCHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHH-HHH-HcCCcEEEECCCCHHHHHHHHHHH
Confidence 8775543322221 122 3588887653 667776655444
No 262
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=45.42 E-value=49 Score=19.98 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=62.6
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcCC-C-CCCchHHHHHHh--cCC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDTP-L-CNGHTTSMDVLW--TGT 83 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~~-~-~~~g~~~lEAla--~G~ 83 (130)
+..+++++.+.......+++.+++.|. ++... ..+.++....+. ..|++ +|.. + ...|..+++.+. ..+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~-~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~ 83 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGY---DVLGV-FDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNL 83 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTC---EEEEE-ESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCC---eeEEE-ECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCC
Confidence 456788887643456778888888775 34321 122344444333 37888 4543 3 345666666654 589
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
|+|.+.+..-..... -....|..+++.. +.+++.+...++.
T Consensus 84 ~ii~ls~~~~~~~~~--~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 84 PIIFITSSQDVETFQ--RAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp CEEEEECCCCHHHHH--HHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHH--HHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 999886543322221 1224577776653 6677766655543
No 263
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=45.20 E-value=53 Score=25.12 Aligned_cols=78 Identities=10% Similarity=0.183 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc-ccEE-EcCCCCCCchHHHHHHh-cCCcEEecCCCchhhh--hHH
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVC-LDTPLCNGHTTSMDVLW-TGTPVVTLPGETLASR--VAA 99 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~-~Dv~-l~~~~~~~g~~~lEAla-~G~PvV~~~g~~~~~r--~~~ 99 (130)
...|++.+++.|+. +|.-..+.+.+--+-.. +|++ + .+..-.-..+|++++ .|+|||...|-.-..- .++
T Consensus 93 ~~~L~~~~~~~Gi~----~~st~~d~~svd~l~~~~v~~~KI-~S~~~~n~~LL~~va~~gkPviLstGmat~~Ei~~Av 167 (349)
T 2wqp_A 93 EIKLKEYVESKGMI----FISTLFSRAAALRLQRMDIPAYKI-GSGECNNYPLIKLVASFGKPIILSTGMNSIESIKKSV 167 (349)
T ss_dssp HHHHHHHHHHTTCE----EEEEECSHHHHHHHHHHTCSCEEE-CGGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCe----EEEeeCCHHHHHHHHhcCCCEEEE-CcccccCHHHHHHHHhcCCeEEEECCCCCHHHHHHHH
Confidence 35677888898885 55555665443222233 6888 5 333334466787776 6999999887532111 244
Q ss_pred HHHHhcCC
Q psy15363 100 SQLATLGC 107 (130)
Q Consensus 100 ~~l~~~g~ 107 (130)
..+...|.
T Consensus 168 e~i~~~G~ 175 (349)
T 2wqp_A 168 EIIREAGV 175 (349)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 44555555
No 264
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=45.18 E-value=28 Score=25.62 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=32.0
Q ss_pred HHHHHhhCCCcE-EEEeecCcc-----c-------H-HHHHHHHHHcCCCCCCEEEecCC
Q psy15363 3 DIFVLKAVPNSI-LWLLKFPAV-----G-------E-ANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~P~a~-l~i~g~~~~-----~-------~-~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.+.+++..|+.. +.|.|.... . | +.+++++.+.|++++|+...|.-
T Consensus 184 ia~~L~~~p~~~~I~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~GI~~~ri~~~G~G 243 (278)
T 2zf8_A 184 IADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDRIQVQGYG 243 (278)
T ss_dssp HHHHHTTCCSCCEEEEEEC-------CCCHHHHHHHHHHHHHHHHHHSCCTTSEECCEEC
T ss_pred HHHHHHhCCCccEEEEEeecCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEC
Confidence 467788999875 778885311 0 1 25667777789998999987764
No 265
>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A
Probab=45.11 E-value=22 Score=24.91 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=27.8
Q ss_pred CCCcEEEEeecCcc-----------c--HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 10 VPNSILWLLKFPAV-----------G--EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 10 ~P~a~l~i~g~~~~-----------~--~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.|+++++|+|..+. + -+.|.+++.+.|++.+.+.++..+
T Consensus 31 ~~~a~ll~VGeaPG~~e~~~G~pF~g~sG~~L~~~L~~~Gl~r~~~yitn~v 82 (205)
T 1ui0_A 31 NPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITNIV 82 (205)
T ss_dssp CTTCSEEEEESCCCHHHHHHSCSSCSHHHHHHHHHHHHHTCCGGGSEEEESC
T ss_pred CCCCCEEEEECCCChhhhhcCCCCcCcHHHHHHHHHHHcCCCcccceeeeee
Confidence 47899999996321 1 247888888899986667766544
No 266
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=45.06 E-value=50 Score=20.06 Aligned_cols=106 Identities=8% Similarity=0.071 Sum_probs=53.7
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh-----cCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW-----TGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla-----~G~ 83 (130)
.+++++.+....+..+++.+++. -.|... .+..+....+. ..|++ +|. .+...|..+++.+. ..+
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~----~~v~~~--~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 77 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE----YLVIES--KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNV 77 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT----SEEEEE--SSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc----ceEEEe--CCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCC
Confidence 46777775433455666666543 233333 33445444443 36888 454 34455777777765 578
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
|+|.+.+..-...... ....|..+++.. +.+++.+...+++
T Consensus 78 ~ii~~s~~~~~~~~~~--~~~~g~~~~l~KP~~~~~l~~~i~~~~ 120 (140)
T 3n53_A 78 PLILLFSSEHKEAIVN--GLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
T ss_dssp CEEEEECC----CTTT--TTTCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHH--HHhcCCCeeeeCCCCHHHHHHHHHHHH
Confidence 9988765422111110 123477776653 6777777666554
No 267
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=44.69 E-value=24 Score=26.65 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA 49 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~ 49 (130)
.|+..+++.| +.+..+.+++.++++|++.+||++-.+-|
T Consensus 354 ~~~~~vyvCG-p~~m~~~v~~~L~~~Gv~~~~i~~E~F~~ 392 (396)
T 1gvh_A 354 DPTMQFYLCG-PVGFMQFTAKQLVDLGVKQENIHYECFGP 392 (396)
T ss_dssp CTTCEEEEES-CHHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCCCEEEEeC-CHHHHHHHHHHHHHcCCCHHHEEEeccCC
Confidence 3567776666 44556777788888898877888765543
No 268
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=44.66 E-value=70 Score=21.59 Aligned_cols=65 Identities=8% Similarity=-0.049 Sum_probs=37.9
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC----CCchHHHHHHhcCCcEE
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC----NGHTTSMDVLWTGTPVV 86 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~----~~g~~~lEAla~G~PvV 86 (130)
.+..+++-|-+...++.+.++++++|.. +....+ ..+.-++...+. ......+.|++.|+|||
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~-----~~~~~~--------~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV 69 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHIT-----LTNLIT--------EETTHVVMKTDAEFVCERTLKYFLGIAGGKWVV 69 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCE-----ECSSCC--------TTCCEEEECBCTTSEECCBHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhCCE-----EeCccC--------CCCcEEEEeCCcccchhhhHHHHHHHhcCCEEe
Confidence 3456666664333567788999998852 222222 123333322221 23567889999999999
Q ss_pred ec
Q psy15363 87 TL 88 (130)
Q Consensus 87 ~~ 88 (130)
+.
T Consensus 70 ~~ 71 (214)
T 1t15_A 70 SY 71 (214)
T ss_dssp ET
T ss_pred CH
Confidence 75
No 269
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=44.29 E-value=19 Score=26.24 Aligned_cols=31 Identities=6% Similarity=0.101 Sum_probs=22.7
Q ss_pred cccEEEcCCC-CCCchHHHHHHhcCCcEEecC
Q psy15363 59 LADVCLDTPL-CNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 59 ~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~~ 89 (130)
.+|+++...| ....-.+.+|+..|++|++-+
T Consensus 69 ~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~eK 100 (315)
T 3c1a_A 69 EVEAVIIATPPATHAEITLAAIASGKAVLVEK 100 (315)
T ss_dssp TCCEEEEESCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCcEEEcC
Confidence 6898865544 344566788999999999764
No 270
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=44.28 E-value=22 Score=26.88 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=26.5
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA 49 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~ 49 (130)
.|+..+++.| +.+..+.+++.++++|++.+||++-.+-|
T Consensus 360 ~~~~~vyvCG-p~~m~~~v~~~L~~~Gv~~~~i~~E~F~~ 398 (403)
T 1cqx_A 360 LPDADYYICG-PIPFMRMQHDALKNLGIHEARIHYEVFGP 398 (403)
T ss_dssp CTTCEEEEES-SHHHHHHHHHHHHHTTCCGGGEEECCCSS
T ss_pred CCCCEEEEeC-CHHHHHHHHHHHHHcCCCHHHeEEeeecC
Confidence 4567776666 34556677777788888877887755433
No 271
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=44.19 E-value=66 Score=21.16 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=60.5
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEE-EcC-CCCCCchHHHHHHh---cCCcE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVC-LDT-PLCNGHTTSMDVLW---TGTPV 85 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~-l~~-~~~~~g~~~lEAla---~G~Pv 85 (130)
.+++++.+.......++..+++.|. .|... .+..+....+.. .|++ +|- .|...|..+++.+. .++||
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~i 79 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGF---EVETF--DCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPI 79 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTC---EEEEE--SSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCc---eEEEc--CCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 4677787643456778888877664 34432 344555555543 6777 554 35556777777764 47899
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHH
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIR 124 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~ 124 (130)
|.+.+..-...... .+ ..|..+++.. +.+++.+...+
T Consensus 80 i~ls~~~~~~~~~~-a~-~~Ga~~~l~Kp~~~~~L~~~i~~ 118 (208)
T 1yio_A 80 VFITAHGDIPMTVR-AM-KAGAIEFLPKPFEEQALLDAIEQ 118 (208)
T ss_dssp EEEESCTTSCCCHH-HH-HTTEEEEEESSCCHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHH-HH-HCCCcEEEeCCCCHHHHHHHHHH
Confidence 88755432222211 12 3477776653 56666555443
No 272
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=44.16 E-value=25 Score=24.76 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=38.0
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
+.++.+-|-....++.+++.++++|.. + .... ..+..++.+. .......+.|++.|+|||+.
T Consensus 16 ~~~i~~SG~~~~~~~~l~~~i~~lGg~---v--~~~~---------~~~THLI~~~-~~rT~K~l~A~~~g~~IVs~ 77 (219)
T 3sqd_A 16 TPFVLFTGFEPVQVQQYIKKLYILGGE---V--AESA---------QKCTHLIASK-VTRTVKFLTAISVVKHIVTP 77 (219)
T ss_dssp CCEEEECSCCHHHHHHHHHHHHHTTCE---E--CSSG---------GGCSEEECSS-CCCCHHHHHHTTTCSEEECH
T ss_pred CeEEEEeCCChHHHHHHHHHHHHCCCE---E--eCCC---------CCceEEEECC-CCCCHHHHHHHHcCCCEecH
Confidence 345555554323456788999999853 2 1111 3556665432 22335789999999999974
No 273
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=44.13 E-value=11 Score=28.27 Aligned_cols=73 Identities=11% Similarity=-0.029 Sum_probs=41.5
Q ss_pred HHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcCC
Q psy15363 5 FVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGT 83 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G~ 83 (130)
+.+++.|+..++-+.+..+.+ ..++++ .+... .+.+++++- ..+|+++-+.|. ...-.+..|+..|+
T Consensus 23 ~~l~~~~~~~l~av~d~~~~~-----~~~~~~----~~~~~--~~~~~ll~~-~~vD~V~i~tp~~~H~~~~~~al~aGk 90 (362)
T 3fhl_A 23 PFISTNPHFELYKIVERSKEL-----SKERYP----QASIV--RSFKELTED-PEIDLIVVNTPDNTHYEYAGMALEAGK 90 (362)
T ss_dssp HHHHHCTTEEEEEEECSSCCG-----GGTTCT----TSEEE--SCSHHHHTC-TTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred HHHhhCCCeEEEEEEcCCHHH-----HHHhCC----CCceE--CCHHHHhcC-CCCCEEEEeCChHHHHHHHHHHHHCCC
Confidence 456677888877666432221 122222 11121 233554431 238998665554 34566889999999
Q ss_pred cEEecC
Q psy15363 84 PVVTLP 89 (130)
Q Consensus 84 PvV~~~ 89 (130)
+|++-+
T Consensus 91 hVl~EK 96 (362)
T 3fhl_A 91 NVVVEK 96 (362)
T ss_dssp EEEEES
T ss_pred eEEEec
Confidence 999864
No 274
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=44.09 E-value=42 Score=23.46 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=39.7
Q ss_pred HHHhhccccEEEcCCCCCCchH--HHHHHh------cCCcEEecCC-CchhhhhHHHHHHhcCCCC----------ceec
Q psy15363 53 HVRRGQLADVCLDTPLCNGHTT--SMDVLW------TGTPVVTLPG-ETLASRVAASQLATLGCPE----------LIAR 113 (130)
Q Consensus 53 ~~~~~~~~Dv~l~~~~~~~g~~--~lEAla------~G~PvV~~~g-~~~~~r~~~~~l~~~g~~~----------~va~ 113 (130)
...+...+|.|+ .+|-+.||- ++|++. .++|||.+.. .+|...+. +++.+--.+ .+++
T Consensus 111 k~~m~~~sda~I-alPGG~GTldEl~e~lt~~qlg~~~kPvvlln~~gfw~~l~~--~l~~~~~~Gfi~~~~~~~i~~~d 187 (199)
T 3qua_A 111 KREMEHRSDAFI-ALPGGIGTLEEFFEAWTAGYLGMHDKPLILLDPFGHYDGLLT--WLRGLVPTGYVSQRAMDSLVVVD 187 (199)
T ss_dssp HHHHHHHCSEEE-ECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTSTTHHHHH--HHHHTTTTTSSCHHHHHTSEEES
T ss_pred HHHHHHhcCccE-EeCCCccHHHHHHHHHHHHHhccCCCCEEEEcCCccchHHHH--HHHHHHHCCCCCHHHCCeEEEeC
Confidence 344567899987 455444553 677887 4899999975 44544332 223221122 3457
Q ss_pred CHHHHHHHH
Q psy15363 114 THKEYQDIA 122 (130)
Q Consensus 114 ~~~~y~~~a 122 (130)
|+++.++..
T Consensus 188 ~~~e~~~~l 196 (199)
T 3qua_A 188 NVEAALEAC 196 (199)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 777766653
No 275
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=43.89 E-value=52 Score=22.20 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=39.0
Q ss_pred HHhhccccEEEcCCCCCCchH--HHHHHh-------cCCcEEecCCCchhhhh-HHHHHHhcCCC-CceecCHHHHHHHH
Q psy15363 54 VRRGQLADVCLDTPLCNGHTT--SMDVLW-------TGTPVVTLPGETLASRV-AASQLATLGCP-ELIARTHKEYQDIA 122 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~~~~~g~~--~lEAla-------~G~PvV~~~g~~~~~r~-~~~~l~~~g~~-~~va~~~~~y~~~a 122 (130)
..+...+|.|+ ..|-+.|+- ++|++. .++| |.+. .+|.... ...++..-..+ -.+++|+++.++..
T Consensus 92 ~~~~~~sda~i-vlpGG~GTl~El~e~lt~~q~g~~~~kP-vll~-g~~~~l~~~~gfi~~~~~~~~~~~~~~~e~~~~l 168 (171)
T 1weh_A 92 GRLLDLGAGYL-ALPGGVGTLAELVLAWNLLYLRRGVGRP-LAVD-PYWLGLLKAHGEIAPEDVGLLRVVADEEDLRRFL 168 (171)
T ss_dssp HHHHHHEEEEE-ECSCCHHHHHHHHHHHHHHHTCSSCSCC-EEEC-GGGGGTCCCBTTBCHHHHTTSEECCSHHHHHHHH
T ss_pred HHHHHhCCEEE-EeCCCccHHHHHHHHHHHHHhCccCCCe-EEEC-cchhhhHhhcCCCChhhcCeEEEeCCHHHHHHHH
Confidence 34456789887 344455654 889998 7899 8776 4444332 00011000011 14568888888776
Q ss_pred HH
Q psy15363 123 IR 124 (130)
Q Consensus 123 ~~ 124 (130)
.+
T Consensus 169 ~~ 170 (171)
T 1weh_A 169 RS 170 (171)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 276
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=43.72 E-value=4.9 Score=19.86 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=16.5
Q ss_pred EEeecCcccHHHHHHHHHHcCCCCCCEEEec
Q psy15363 16 WLLKFPAVGEANIQATAQALGLDQHRILFSN 46 (130)
Q Consensus 16 ~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g 46 (130)
+-+|+.+.....|++.+++..+ ||.|.|
T Consensus 8 iwvggtpeelkklkeeakkani---rvtfwg 35 (36)
T 2ki0_A 8 IWVGGTPEELKKLKEEAKKANI---RVTFWG 35 (36)
T ss_dssp CCBCCCHHHHHHHHHHHHHHCC---CCCBCC
T ss_pred EEecCCHHHHHHHHHHHHhccE---EEEeec
Confidence 3455433344567777777665 777765
No 277
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=43.16 E-value=72 Score=21.34 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=61.4
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh---cCCcE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW---TGTPV 85 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla---~G~Pv 85 (130)
.+++++.+.......++..+++.|. +|... .+..+....+. ..|++ +|. .|...|..+++.+. ..+||
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~i 82 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGF---EVATA--VDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEE--SSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCC---EEEEE--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 5777887644456778888887665 34432 23344444443 46888 454 35556777777764 47899
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
|.+.+..-...... .-..|..+++.. +.+++.+...++.
T Consensus 83 i~lt~~~~~~~~~~--~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 123 (233)
T 1ys7_A 83 CVLSARSSVDDRVA--GLEAGADDYLVKPFVLAELVARVKALL 123 (233)
T ss_dssp EEEECCCTTTCCCT--TTTTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHH--HHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 88755322211110 113477776653 6677766655543
No 278
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=43.15 E-value=36 Score=21.74 Aligned_cols=36 Identities=8% Similarity=-0.028 Sum_probs=25.1
Q ss_pred cEEEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 13 SILWLLKFPAV----GEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 13 a~l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
-.+++.|.... ..+.+++.++++|++.++++++...
T Consensus 107 ~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~ii~~~~~ 146 (151)
T 1e5p_A 107 NMIVVAGKGNALTPEENEILVQFAHEKKIPVENILNILAT 146 (151)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEECGGG
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCcC
Confidence 34566775322 2456778899999998899987653
No 279
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=42.79 E-value=6.2 Score=28.96 Aligned_cols=34 Identities=18% Similarity=-0.074 Sum_probs=24.8
Q ss_pred HhhccccEEEc-CCCCCCchHHHHHHhcCCcEEec
Q psy15363 55 RRGQLADVCLD-TPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 55 ~~~~~~Dv~l~-~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.++..+|+.+| |.|...-..+..|+..|+|+|+-
T Consensus 68 ~~l~~~DvVIDft~p~~~~~~~~~a~~~G~~vVig 102 (273)
T 1dih_A 68 AVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIG 102 (273)
T ss_dssp TTTTSCSEEEECSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred HHhcCCCEEEEcCChHHHHHHHHHHHhCCCCEEEE
Confidence 44567999995 44554445577889999999984
No 280
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Probab=42.63 E-value=30 Score=25.98 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=24.8
Q ss_pred cccEEEcCCCCCCc-----hHHHHHHhcCCcEEecCC
Q psy15363 59 LADVCLDTPLCNGH-----TTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g-----~~~lEAla~G~PvV~~~g 90 (130)
..|++++..|-.++ ..+.+|+..|+.|||...
T Consensus 82 ~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK 118 (325)
T 3ing_A 82 AADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANK 118 (325)
T ss_dssp CCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCc
Confidence 58999987654332 458999999999999654
No 281
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=42.46 E-value=73 Score=21.19 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=29.4
Q ss_pred hHHHHHHhcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 73 TTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 73 ~~~lEAla~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
+-+.-|.++|.++|......... .-+.. ..++++.++.++..+...++.
T Consensus 193 ~Di~~a~~aG~~~i~v~~~~~~~----~~l~~-~~ad~v~~~~~el~~~l~~~~ 241 (247)
T 3dv9_A 193 LGVQAGVAAGIFTIAVNTGPLHD----NVLLN-EGANLLFHSMPDFNKNWETLQ 241 (247)
T ss_dssp HHHHHHHHTTSEEEEECCSSSCH----HHHHT-TTCSEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEEcCCCCCH----HHHHh-cCCCEEECCHHHHHHHHHHHH
Confidence 44666788999888664321111 11111 236788899888877766654
No 282
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=42.44 E-value=73 Score=21.18 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=61.4
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh---cCCcE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW---TGTPV 85 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla---~G~Pv 85 (130)
.+++++.+.......+++.+++.|. .|... .+..+....+. ..|++ +|- .|...|..+++.+. ..+||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~i 77 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMF---TVDVC--YDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPV 77 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC---EEEEE--SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCC---EEEEE--CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 4677777643456778888887665 34432 23344434333 46888 454 35556777777764 47899
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
|.+.+..-..... -.-..|..+++.. +.+++.+...++.
T Consensus 78 i~ls~~~~~~~~~--~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 118 (225)
T 1kgs_A 78 LMLTALSDVEYRV--KGLNMGADDYLPKPFDLRELIARVRALI 118 (225)
T ss_dssp EEEESSCHHHHHH--HTCCCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHH--HHHhCCccEEEeCCCCHHHHHHHHHHHH
Confidence 9886643222111 1123477777653 6677766665543
No 283
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=42.30 E-value=76 Score=21.31 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=29.8
Q ss_pred hHHHHHHhcCCcEEecCCCc-hhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 73 TTSMDVLWTGTPVVTLPGET-LASRVAASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 73 ~~~lEAla~G~PvV~~~g~~-~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
+-+.-|..+|.++|...... .... +.. ..++++.++.++..+...+|+
T Consensus 194 ~Di~~a~~aG~~~i~v~~~~~~~~~-----l~~-~~ad~v~~s~~el~~~l~~li 242 (243)
T 3qxg_A 194 LGVEAGHKAGIFTIAVNTGPLDGQV-----LLD-AGADLLFPSMQTLCDSWDTIM 242 (243)
T ss_dssp HHHHHHHHTTCEEEEECCSSSCHHH-----HHH-TTCSEEESCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEeCCCCCHHH-----HHh-cCCCEEECCHHHHHHHHHhhh
Confidence 44666778899888664321 1111 111 235788899999888776653
No 284
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=41.71 E-value=77 Score=21.21 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=63.7
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh--cCCcEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW--TGTPVV 86 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla--~G~PvV 86 (130)
.+++++.+.....+.++..+++.|. .|... .+.++....+. ..|++ +|- .|...|..+++.+. ..+|+|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii 79 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGF---EATVV--TDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVI 79 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEE--CSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCC---EEEEE--CCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEE
Confidence 4677787643456778888887665 34432 23344444443 37888 454 35556777776664 479999
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
.+.+..-...... .-..|..+++.. +.+++.+...++.+
T Consensus 80 ~lt~~~~~~~~~~--~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (230)
T 2oqr_A 80 MVTARDSEIDKVV--GLELGADDYVTKPYSARELIARIRAVLR 120 (230)
T ss_dssp EEECCHHHHHHHH--HHHHCCSCCCCSSCCHHHHHHHHHHHHT
T ss_pred EEeCCCcHHHHHH--HHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 8876533222211 223588786653 67777776665543
No 285
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=41.67 E-value=20 Score=24.96 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=16.6
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILF 44 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f 44 (130)
..+++.| +....+.+++.++++|++.++|+.
T Consensus 212 ~~vy~CG-p~~m~~~v~~~l~~~G~~~~~i~~ 242 (243)
T 2eix_A 212 IKVMMCG-PPMMNKAMQGHLETLGYTPEQWFI 242 (243)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred eEEEEEC-CHHHHHHHHHHHHHcCCCHHHEEe
Confidence 3444444 333445566666666776556553
No 286
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=41.56 E-value=27 Score=24.07 Aligned_cols=24 Identities=17% Similarity=-0.119 Sum_probs=17.5
Q ss_pred CHHHHHHhhccccEEEcCCC-CCCc
Q psy15363 49 AKEEHVRRGQLADVCLDTPL-CNGH 72 (130)
Q Consensus 49 ~~~~~~~~~~~~Dv~l~~~~-~~~g 72 (130)
+.+++...+..||.++..+| |.++
T Consensus 60 d~~~~~~~l~~AD~iV~~~P~y~~s 84 (204)
T 2amj_A 60 DVKAEVQNFLWADVVIWQMPGWWMG 84 (204)
T ss_dssp CHHHHHHHHHHCSEEEEEEECBTTB
T ss_pred cHHHHHHHHHhCCEEEEECCccccC
Confidence 45677888899999987665 4443
No 287
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=41.34 E-value=84 Score=21.55 Aligned_cols=64 Identities=9% Similarity=0.014 Sum_probs=36.6
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCC----CCchHHHHHHhcCCcEEe
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC----NGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~----~~g~~~lEAla~G~PvV~ 87 (130)
+..+++-|-....+..++++++++|.. +...++ ..+.-++...+. ......+.|++.|+|||+
T Consensus 7 ~~~i~~sg~~~~~~~~l~~~~~~~G~~-----~~~~~~--------~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~ 73 (229)
T 1l0b_A 7 DISMVVSGLTPKEVMIVQKFAEKYRLA-----LTDVIT--------EETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVS 73 (229)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHTTCE-----ECSSCC--------SSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHcCCE-----EeCCcC--------CCCCEEEEcCCccccccccHHHHHHHHCCCcEec
Confidence 344444443223456788999998853 222221 233333322221 245678999999999997
Q ss_pred c
Q psy15363 88 L 88 (130)
Q Consensus 88 ~ 88 (130)
.
T Consensus 74 ~ 74 (229)
T 1l0b_A 74 Y 74 (229)
T ss_dssp T
T ss_pred H
Confidence 5
No 288
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=41.15 E-value=31 Score=25.61 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=26.0
Q ss_pred hCCCcEEEEeecCcc---cHHHHHHHHHHcCCCCCCEEEecCCC
Q psy15363 9 AVPNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNVAA 49 (130)
Q Consensus 9 ~~P~a~l~i~g~~~~---~~~~l~~~~~~~g~~~~rv~f~g~~~ 49 (130)
..++-.|+++|++.+ ..+.++++++..|-...||.|++..+
T Consensus 23 ~~~~g~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~IptAs 66 (291)
T 3en0_A 23 LSSQPAILIIGGAEDKVHGREILQTFWSRSGGNDAIIGIIPSAS 66 (291)
T ss_dssp -CCSCCEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEEECTTC
T ss_pred CCCCceEEEEECCCCccChHHHHHHHHHHcCCCCCeEEEEeCCC
Confidence 334567888885321 23567777777775446888887765
No 289
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=41.09 E-value=63 Score=20.03 Aligned_cols=109 Identities=9% Similarity=0.041 Sum_probs=61.6
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh---cCC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW---TGT 83 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla---~G~ 83 (130)
.+.+++++.+.......+++.+++.|. +|.... +..+....+. ..|++ +|. .+...|..+++.+. ..+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 80 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGC---NIITFT--SPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDI 80 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTC---EEEEES--CHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTS
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCC---eEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 356788888644456778888887664 344333 3455555543 36888 454 34445766666664 478
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
|||.+.+..-.. .....++.-|..+++.. +.+++.+...++
T Consensus 81 ~ii~ls~~~~~~-~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~ 123 (154)
T 2rjn_A 81 ERVVISGYADAQ-ATIDAVNRGKISRFLLKPWEDEDVFKVVEKG 123 (154)
T ss_dssp EEEEEECGGGHH-HHHHHHHTTCCSEEEESSCCHHHHHHHHHHH
T ss_pred cEEEEecCCCHH-HHHHHHhccchheeeeCCCCHHHHHHHHHHH
Confidence 998876543222 11222332237776653 566666555443
No 290
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=40.91 E-value=98 Score=22.22 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=64.5
Q ss_pred hhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEE-EecCCCHHHHHHhhc--cccEEE-cC-CC-CCCchHH---HHH
Q psy15363 8 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRIL-FSNVAAKEEHVRRGQ--LADVCL-DT-PL-CNGHTTS---MDV 78 (130)
Q Consensus 8 ~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~-f~g~~~~~~~~~~~~--~~Dv~l-~~-~~-~~~g~~~---lEA 78 (130)
+.....+++++.++...+..++..+++.|.. |. .. .+..+-+..+. ..|+.| |- .| .-.|..+ +-+
T Consensus 156 r~~l~~rILvVdD~~~~~~~l~~~L~~~g~~---v~~~a--~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~ 230 (286)
T 3n0r_A 156 DAELATEVLIIEDEPVIAADIEALVRELGHD---VTDIA--ATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILG 230 (286)
T ss_dssp HTSCCCEEEEECCSHHHHHHHHHHHHHTTCE---EEEEE--SSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHH
T ss_pred hccCCCcEEEEcCCHHHHHHHHHHhhccCce---EEEEe--CCHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHh
Confidence 3445567778876544577888888988863 43 22 23344444443 378884 53 36 3344433 334
Q ss_pred HhcCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 79 LWTGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 79 la~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
.. .+|||.+.+.. ..... ....|..+++.. +.+++.+...+++.
T Consensus 231 ~~-~~piI~lT~~~--~~~~~--~~~~G~~~~l~KP~~~~~L~~~i~~~l~ 276 (286)
T 3n0r_A 231 RM-DVPVIFITAFP--ERLLT--GERPEPTFLITKPFQPETVKAAIGQALF 276 (286)
T ss_dssp HT-TCCEEEEESCG--GGGCC--SSSCCCSSEEESSCCHHHHHHHHHHHHH
T ss_pred cC-CCCEEEEeCCH--HHHHH--HHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 44 99999887752 11111 123577787763 77888877766553
No 291
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=40.60 E-value=59 Score=19.60 Aligned_cols=110 Identities=5% Similarity=-0.034 Sum_probs=61.0
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHh---cCCcE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLW---TGTPV 85 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla---~G~Pv 85 (130)
.+++++.+....+..+++.+++.|-- ..+.. ..+..+....+. ..|+++ |. .|...|..+++.+. ..+||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~-~~v~~--~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~i 80 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDF-EILAD--TDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKV 80 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSE-EEEEE--ESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCc-EEEEE--cCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcE
Confidence 46677775433466777777766511 12222 223344444443 478884 54 35556777777764 46888
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|...+..-...... .+ ..|..+++.. +.+++.+...++.+
T Consensus 81 i~ls~~~~~~~~~~-~~-~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 81 IIVTTFKRPGYFEK-AV-VNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp EEEESCCCHHHHHH-HH-HTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred EEEecCCCHHHHHH-HH-HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 87765433222221 22 3588887653 67777776665543
No 292
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=40.45 E-value=76 Score=20.81 Aligned_cols=107 Identities=11% Similarity=0.072 Sum_probs=53.6
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCC--CCEEEecC----CCHHH-HHHhhccccEEEcCC---CCC-CchHHHHHHhc
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQ--HRILFSNV----AAKEE-HVRRGQLADVCLDTP---LCN-GHTTSMDVLWT 81 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~--~rv~f~g~----~~~~~-~~~~~~~~Dv~l~~~---~~~-~g~~~lEAla~ 81 (130)
.++.++.. .....++..++++|+.. +.+..... .|..+ +..+.....+ ++. -++ +.+-+.-|-.+
T Consensus 103 ~~~~i~t~--~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi--~~~~~i~iGD~~~Di~~a~~a 178 (226)
T 3mc1_A 103 FHLVVATS--KPTVFSKQILEHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAMESLNI--KSDDAIMIGDREYDVIGALKN 178 (226)
T ss_dssp CEEEEEEE--EEHHHHHHHHHHTTCGGGCSEEEEECTTSSSCSHHHHHHHHHHHHTC--CGGGEEEEESSHHHHHHHHTT
T ss_pred CeEEEEeC--CCHHHHHHHHHHhCCHhheeeeeccCCCCCCCCCHHHHHHHHHHhCc--CcccEEEECCCHHHHHHHHHC
Confidence 56666653 34566777788888751 33333332 23322 2222222111 111 012 23445567889
Q ss_pred CCcEEecC-CCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 82 GTPVVTLP-GETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 82 G~PvV~~~-g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
|.++|... |....... .+ ...+++.++.++..++.....+++
T Consensus 179 G~~~i~v~~g~~~~~~~----~~--~~ad~v~~s~~el~~~~~~~~~~~ 221 (226)
T 3mc1_A 179 NLPSIGVTYGFGSYEEL----KN--AGANYIVNSVDELHKKILELREGH 221 (226)
T ss_dssp TCCEEEESSSSSCHHHH----HH--HTCSEEESSHHHHHHHHHTC----
T ss_pred CCCEEEEccCCCCHHHH----HH--cCCCEEECCHHHHHHHHHHHhccc
Confidence 99988765 22111111 11 235788899999988877665543
No 293
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=40.43 E-value=16 Score=24.52 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=25.3
Q ss_pred HHhhccccEEEcCC----CCCC-chHHHHHHhcCCcEEecCCC
Q psy15363 54 VRRGQLADVCLDTP----LCNG-HTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~----~~~~-g~~~lEAla~G~PvV~~~g~ 91 (130)
...++.||+++--. +..| +.-+-=|.+.|+|||+...+
T Consensus 73 ~~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~~~ 115 (157)
T 1f8y_A 73 LNGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPD 115 (157)
T ss_dssp HHHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEECG
T ss_pred HHHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEEcC
Confidence 45678899985332 2222 33355699999999998643
No 294
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=40.36 E-value=1.1e+02 Score=23.08 Aligned_cols=74 Identities=14% Similarity=0.049 Sum_probs=46.9
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchH-HHHHHh-cCCcEEecCC
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTT-SMDVLW-TGTPVVTLPG 90 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~-~lEAla-~G~PvV~~~g 90 (130)
++++.+......+.++++.++.|+ .+.+......++....+..+|+.+-.......-. +++++- .++-+|...|
T Consensus 3 ki~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~ 78 (343)
T 2yq5_A 3 KIAMYNVSPIEVPYIEDWAKKNDV---EIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRI 78 (343)
T ss_dssp EEEEESCCGGGHHHHHHHHHHHTC---EEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESS
T ss_pred eEEEEecCcccHHHHHHHHHhCCe---EEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECc
Confidence 455555433456778888888775 3555444333566678889999875433333455 888875 4777777655
No 295
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=40.33 E-value=96 Score=21.95 Aligned_cols=36 Identities=8% Similarity=0.232 Sum_probs=21.3
Q ss_pred HhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe
Q psy15363 7 LKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFS 45 (130)
Q Consensus 7 l~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~ 45 (130)
.++..+++++++|-++.+.+ +.+.+.+.|+ .++++.
T Consensus 23 q~~l~~~~VlvvG~GglG~~-va~~La~~Gv--g~i~lv 58 (251)
T 1zud_1 23 QQKLLDSQVLIIGLGGLGTP-AALYLAGAGV--GTLVLA 58 (251)
T ss_dssp HHHHHTCEEEEECCSTTHHH-HHHHHHHTTC--SEEEEE
T ss_pred HHHHhcCcEEEEccCHHHHH-HHHHHHHcCC--CeEEEE
Confidence 34556788889987554443 4444455676 355543
No 296
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=40.24 E-value=73 Score=21.08 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHhhCCC-cEEEEeecC---cc----c---------H-HHHHHHHHHcCCCCCCEEEecCCC--------HHHHHHh
Q psy15363 3 DIFVLKAVPN-SILWLLKFP---AV----G---------E-ANIQATAQALGLDQHRILFSNVAA--------KEEHVRR 56 (130)
Q Consensus 3 w~~il~~~P~-a~l~i~g~~---~~----~---------~-~~l~~~~~~~g~~~~rv~f~g~~~--------~~~~~~~ 56 (130)
.+.+++.+|+ .++.|.|+. |. . + ..+++++.+.|++++|+...|+-. .++-...
T Consensus 54 ia~~l~~~~~~~~i~I~GhTD~~g~~~~~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G~~~P~~~~~t~~~~~~ 133 (166)
T 3s06_A 54 IAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSYGSTNPIAPNDSLENRMK 133 (166)
T ss_dssp HHHHGGGSCTTCEEEEEEEEESCCCCCTTCCSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEEECCCTTCCHHHHHH
T ss_pred HHHHHHhCCCCceEEEEEeeCCCCcccccchhHHHHHHHHHHHHHHHHHHcCCChHhEEEEEECCcCCCCCCcChHHHhc
Confidence 4678889996 489998852 22 1 1 256677778899989998876521 1233444
Q ss_pred hccccEEEcCCC
Q psy15363 57 GQLADVCLDTPL 68 (130)
Q Consensus 57 ~~~~Dv~l~~~~ 68 (130)
=+.++|.+.+..
T Consensus 134 NRRVei~i~~~~ 145 (166)
T 3s06_A 134 NNRVEIFFSTDA 145 (166)
T ss_dssp HTCEEEEEECCC
T ss_pred CCCEEEEEEcCc
Confidence 577888875543
No 297
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=40.23 E-value=95 Score=21.85 Aligned_cols=70 Identities=16% Similarity=0.048 Sum_probs=41.7
Q ss_pred HHhhccccEEEcCCCCCCchH--HHHHHh------cCCcEEecCCC-chhhhhH--HHHHHhcCC-C------CceecCH
Q psy15363 54 VRRGQLADVCLDTPLCNGHTT--SMDVLW------TGTPVVTLPGE-TLASRVA--ASQLATLGC-P------ELIARTH 115 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~~~~~g~~--~lEAla------~G~PvV~~~g~-~~~~r~~--~~~l~~~g~-~------~~va~~~ 115 (130)
..+...+|.|+- +|-+.||- ++|++. .++|||.+..+ +|...+. ..++. -|. + -.+++|+
T Consensus 100 ~~~~~~sda~I~-lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~-~Gfi~~~~~~~~~~~d~~ 177 (216)
T 1ydh_A 100 AAMAQEAEAFIA-LPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVE-EGFIKPGARNIVVSAPTA 177 (216)
T ss_dssp HHHHHHCSEEEE-CSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHH-TTSSCHHHHTTEEEESSH
T ss_pred HHHHHhCCEEEE-eCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHH-CCCCChHHcCeEEEeCCH
Confidence 345678999873 45444542 566664 68999999754 4443332 12222 232 1 1567899
Q ss_pred HHHHHHHHHh
Q psy15363 116 KEYQDIAIRL 125 (130)
Q Consensus 116 ~~y~~~a~~l 125 (130)
++.++...+.
T Consensus 178 ee~~~~l~~~ 187 (216)
T 1ydh_A 178 KELMEKMEEY 187 (216)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9888877653
No 298
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=40.12 E-value=25 Score=24.01 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=45.6
Q ss_pred CCcEEEEeecC---c----ccHHHHHHHHHHcCCCCCCEEEecCCCHHH----HHHhhccccEEEcCCCCCC--chHHHH
Q psy15363 11 PNSILWLLKFP---A----VGEANIQATAQALGLDQHRILFSNVAAKEE----HVRRGQLADVCLDTPLCNG--HTTSMD 77 (130)
Q Consensus 11 P~a~l~i~g~~---~----~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~----~~~~~~~~Dv~l~~~~~~~--g~~~lE 77 (130)
|.+-++.+|+. | .....|.+++++.|+...++...+-- .++ +..+...+|+.+.|-.-+- --.+-|
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd-~~~I~~~l~~a~~~~DlVittGG~g~~~~D~T~e 82 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD-LDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVE 82 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC-HHHHHHHHHHHHHHCSEEEEESCCSSSTTCCHHH
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhcCCEEEEcCCCcCCcccchHH
Confidence 45566666642 1 12457889999999864444444432 233 3444556899985543221 223667
Q ss_pred HHh--cCCcEEecC
Q psy15363 78 VLW--TGTPVVTLP 89 (130)
Q Consensus 78 Ala--~G~PvV~~~ 89 (130)
|++ +|++++..+
T Consensus 83 a~a~~~~~~l~~~~ 96 (172)
T 3kbq_A 83 GFAKCIGQDLRIDE 96 (172)
T ss_dssp HHHHHHTCCCEECH
T ss_pred HHHHHcCCCeeeCH
Confidence 664 789988754
No 299
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=39.82 E-value=22 Score=24.47 Aligned_cols=18 Identities=6% Similarity=0.041 Sum_probs=8.2
Q ss_pred HHHHHHH-HHcCCCCCCEE
Q psy15363 26 ANIQATA-QALGLDQHRIL 43 (130)
Q Consensus 26 ~~l~~~~-~~~g~~~~rv~ 43 (130)
+.+++.+ +++|++.++|+
T Consensus 207 ~~v~~~l~~~~g~~~~~i~ 225 (232)
T 1qfj_A 207 KIARDLFCSERNAREDRLF 225 (232)
T ss_dssp HHHHHHHHHHSCCCGGGEE
T ss_pred HHHHHHHHHHcCCCHHHEE
Confidence 3444444 45555444444
No 300
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=39.30 E-value=61 Score=19.35 Aligned_cols=106 Identities=7% Similarity=-0.044 Sum_probs=59.2
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh--ccccEE-EcCC-CCCCchHHHHHHhc-----CC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG--QLADVC-LDTP-LCNGHTTSMDVLWT-----GT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~--~~~Dv~-l~~~-~~~~g~~~lEAla~-----G~ 83 (130)
.+++++.+.......++..++ .|. +|.... +.++....+ ...|++ +|.. +...|..+++.+.. .+
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~---~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~ 78 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEF---DCTTAA--DGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHI 78 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTS---EEEEES--SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCc---EEEEEC--CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCC
Confidence 467777754334556666655 342 344332 334444444 347887 4543 55567777777664 78
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|+|...+..-... .-....|..+++.. +.+++.+...++++
T Consensus 79 pii~~s~~~~~~~---~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 79 PVIFVSGYAPRTE---GPADQPVPDAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp CEEEEESCCC--------TTSCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHhH---HHHhhcCCceEEeccCCHHHHHHHHHHHHh
Confidence 9998765432221 12224477776653 67788777766553
No 301
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=38.61 E-value=41 Score=24.86 Aligned_cols=41 Identities=12% Similarity=-0.062 Sum_probs=27.6
Q ss_pred CHHHHHHhhccccEEEcCCCC-CCchHHHHHHhcCCcEEecC
Q psy15363 49 AKEEHVRRGQLADVCLDTPLC-NGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 49 ~~~~~~~~~~~~Dv~l~~~~~-~~g~~~lEAla~G~PvV~~~ 89 (130)
+.+++++-....|+++-+.|. ...-.+..|+..|++|++-+
T Consensus 71 ~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EK 112 (330)
T 4ew6_A 71 TIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALVAGKHVFLEK 112 (330)
T ss_dssp SHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCEEEECS
T ss_pred CHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEeC
Confidence 345554422348888655553 34566889999999999865
No 302
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=38.59 E-value=32 Score=25.89 Aligned_cols=86 Identities=10% Similarity=-0.089 Sum_probs=45.3
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC--------C-HHHHHHhhccccEEEcCCCCCC-c
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA--------A-KEEHVRRGQLADVCLDTPLCNG-H 72 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~--------~-~~~~~~~~~~~Dv~l~~~~~~~-g 72 (130)
..+++.+.|+..++.+.+..+. ...+.+.+.|.+ -.-.|.+.+ . ..+....+..+|+.++..|... .
T Consensus 16 l~r~L~~~~~~elvav~d~~~~--~~~~~~~~~g~~-~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV~~atp~~~~~ 92 (337)
T 1cf2_P 16 VADAIAQQDDMKVIGVSKTRPD--FEARMALKKGYD-LYVAIPERVKLFEKAGIEVAGTVDDMLDEADIVIDCTPEGIGA 92 (337)
T ss_dssp HHHHHHTSSSEEEEEEEESSCS--HHHHHHHHTTCC-EEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEEEECCSTTHHH
T ss_pred HHHHHHcCCCcEEEEEEcCChh--HHHHhcCCcchh-hccccccceeeecCCceEEcCCHHHHhcCCCEEEECCCchhhH
Confidence 4567777899888777642222 223344443211 000011100 0 0012223457999998776543 3
Q ss_pred hHHHHHHhcCCcEEecCCC
Q psy15363 73 TTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 73 ~~~lEAla~G~PvV~~~g~ 91 (130)
-..-.++..|++||...+.
T Consensus 93 ~~a~~~l~aG~~VId~sp~ 111 (337)
T 1cf2_P 93 KNLKMYKEKGIKAIFQGGE 111 (337)
T ss_dssp HHHHHHHHHTCCEEECTTS
T ss_pred HHHHHHHHcCCEEEEecCC
Confidence 3345677889999988765
No 303
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=38.48 E-value=67 Score=24.66 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=59.7
Q ss_pred HHHHHHcCCCCC-CEEEecCCCHHHHHHhhcc------ccEE-EcCCC-CCCchHH----HHHH---hcCCcEEec-CCC
Q psy15363 29 QATAQALGLDQH-RILFSNVAAKEEHVRRGQL------ADVC-LDTPL-CNGHTTS----MDVL---WTGTPVVTL-PGE 91 (130)
Q Consensus 29 ~~~~~~~g~~~~-rv~f~g~~~~~~~~~~~~~------~Dv~-l~~~~-~~~g~~~----lEAl---a~G~PvV~~-~g~ 91 (130)
...+..+|..+. -+.+.|..+.+.+...++. .|.. +.-|. ...+..+ .+|+ ..++|+|+. .|.
T Consensus 273 ~D~i~~~Gg~~aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~vA~gii~a~~~~~~~~pivvrl~G~ 352 (388)
T 2nu8_B 273 MDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGN 352 (388)
T ss_dssp HHHHHHTTCCBCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEEST
T ss_pred hHHHHHcCCCcCceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCchHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 355677776544 3667777776665443332 3333 33221 1112222 2232 268998876 343
Q ss_pred chhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccC
Q psy15363 92 TLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 92 ~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
+ ...+..+|+..|++-..+++.++=++++++++++
T Consensus 353 n--~~~g~~~l~~~g~~~~~~~~~~~aa~~~v~~~~~ 387 (388)
T 2nu8_B 353 N--AELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEG 387 (388)
T ss_dssp T--HHHHHHHHHTTCSSEEECSSHHHHHHHHHHHTTT
T ss_pred C--HHHHHHHHHHCCCceecCCCHHHHHHHHHHHhhc
Confidence 3 3446678887788877889999999999999875
No 304
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=38.13 E-value=42 Score=21.52 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=24.6
Q ss_pred EEEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 14 ILWLLKFPAV----GEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 14 ~l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.+++.+.... ..+.++++++++|++.++++++...
T Consensus 114 ~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~~ 152 (157)
T 1dzk_A 114 MTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIER 152 (157)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEESGGG
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCcC
Confidence 4566775322 2456778899999998889987653
No 305
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=38.11 E-value=61 Score=19.01 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=60.1
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh-----cCCc
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW-----TGTP 84 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla-----~G~P 84 (130)
+++++.+.......+++.+++.|. ++... .+..+....+. ..|+. +|. .|...|..+++.+. ..+|
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~---~v~~~--~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 77 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGY---ETLQT--REGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIP 77 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC---EEEEE--SCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCc---EEEEe--CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCc
Confidence 566777543346678888887775 24322 33344434332 36887 454 35556777887775 3689
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
+|...+..-..... ..+ ..|..+++.. +.+++.+...++.+
T Consensus 78 ii~~s~~~~~~~~~-~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 78 VVAVTAFAMKGDEE-RIR-EGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEEEC------CHH-HHH-HHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHH-HHH-hCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 98876543222111 122 3477777653 67777777666554
No 306
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=38.10 E-value=43 Score=21.53 Aligned_cols=36 Identities=11% Similarity=-0.113 Sum_probs=25.3
Q ss_pred cEEEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 13 SILWLLKFPAV----GEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 13 a~l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
-.++|.+.... ..+.+++.++++|++.++++++...
T Consensus 112 ~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~i~~~~~~ 151 (156)
T 1bj7_A 112 KMTEGLAKGTSFTPEELEKYQQLNSERGVPNENIENLIKT 151 (156)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHHTCCGGGEEECGGG
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEecCCC
Confidence 34667775322 2456778899999998899987653
No 307
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=38.09 E-value=17 Score=24.68 Aligned_cols=36 Identities=11% Similarity=-0.108 Sum_probs=24.3
Q ss_pred HHhhccccEEEc---CCCCCCc--hHHHHHHhcCCcEEecC
Q psy15363 54 VRRGQLADVCLD---TPLCNGH--TTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 54 ~~~~~~~Dv~l~---~~~~~~g--~~~lEAla~G~PvV~~~ 89 (130)
.+.++.||+++- ......| .-+--|.+.|+|||++.
T Consensus 76 ~~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 76 LTGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 456788999964 2222223 33556899999999984
No 308
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=37.81 E-value=99 Score=21.34 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=60.9
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC----HHHHHHhh--ccccEEEcCCCCCCchHHHHH-----
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA----KEEHVRRG--QLADVCLDTPLCNGHTTSMDV----- 78 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~----~~~~~~~~--~~~Dv~l~~~~~~~g~~~lEA----- 78 (130)
.++-++++..+ ...++.|.+.+++.|..-+.+..--..+ .+++...+ ...|..+.+|+.+-- ..++.
T Consensus 118 ~~g~~vL~~rg-~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~~ 195 (240)
T 3mw8_A 118 VSGKQIVIVRG-KGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLE-NLINLVPKDS 195 (240)
T ss_dssp CTTCEEEEEEE-SSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHH-HHHHHSCGGG
T ss_pred CCCCEEEEEeC-CCcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHH-HHHHHcchHH
Confidence 45556555553 2456778888999997656666544433 33444444 357999877764310 01111
Q ss_pred --HhcCCcEEecCCCchhhhhHHHHHHhcCCCC-cee--cCHHHHHHH
Q psy15363 79 --LWTGTPVVTLPGETLASRVAASQLATLGCPE-LIA--RTHKEYQDI 121 (130)
Q Consensus 79 --la~G~PvV~~~g~~~~~r~~~~~l~~~g~~~-~va--~~~~~y~~~ 121 (130)
...++++++.. ..++..++..|+.. .++ .+.+++++.
T Consensus 196 ~~~l~~~~~~aiG------~~ta~~l~~~G~~~~~va~~p~~~~ll~a 237 (240)
T 3mw8_A 196 FAWLRDCHIIVPS------ARVETQARKKGLRRVTNAGAANQAAVLDA 237 (240)
T ss_dssp HHHHHHSEEEESS------HHHHHHHHHTTCCCEEECSSSSHHHHHHH
T ss_pred HHHHhCCCEEEEC------HHHHHHHHHcCCCceEeCCCCCHHHHHHH
Confidence 12367777753 34677788889886 445 456666553
No 309
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=37.76 E-value=4.7 Score=28.39 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=26.3
Q ss_pred CcEEEEeecCcccHHHHHHHH-HHcCCCCCCEEEecCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATA-QALGLDQHRILFSNVAA 49 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~-~~~g~~~~rv~f~g~~~ 49 (130)
+..+++.| +....+.+++.+ +++|++.+++...+++.
T Consensus 206 ~~~vy~CG-p~~m~~~v~~~l~~~~G~~~~~i~~~~~~~ 243 (248)
T 1fdr_A 206 TSHVMLCG-NPQMVRDTQQLLKETRQMTKHLRRRPGHMT 243 (248)
T ss_dssp TEEEEEEE-CHHHHHHHHHHHHHHHCCCBCBTTBCCSEE
T ss_pred CCEEEEeC-CHHHHHHHHHHHHHHcCCChHHcCCCccEE
Confidence 56676777 445567788888 88999877776666543
No 310
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=37.71 E-value=60 Score=18.84 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=60.3
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHh--cCCcEEe
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLW--TGTPVVT 87 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla--~G~PvV~ 87 (130)
+++++.+.......++..+++.|. ++.... +..+....+. ..|+++ |. .|...|..+++.+. ..+|+|.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~---~v~~~~--~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~ 77 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGY---EVVTAF--NGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILM 77 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCc---EEEEec--CHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEE
Confidence 566777543346677777777664 344322 3344433332 478874 53 34445776666663 5789887
Q ss_pred cCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 88 LPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 88 ~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
..+..-...... ....|..+++.. +.+++.+...++.+
T Consensus 78 ~s~~~~~~~~~~--~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 78 LSAKDSEFDKVI--GLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp EESCCSHHHHHH--HHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EecCCchHHHHH--HHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 755432222111 123488787653 67777776665544
No 311
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=37.57 E-value=67 Score=19.32 Aligned_cols=106 Identities=8% Similarity=0.043 Sum_probs=60.9
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHh---cCCcE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLW---TGTPV 85 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla---~G~Pv 85 (130)
.+++++.+....+..++..+++.|. +|.... +..+....+. ..|+.+ |. .|...|..+++.+. .++|+
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~i 78 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGY---EVEIAA--TAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKK 78 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCc---eEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcE
Confidence 4677787643446778888887664 344322 3344444433 468884 43 34445777777664 46898
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
|...+..-..... . ....|..+++.. +.+++.+...++
T Consensus 79 i~~s~~~~~~~~~-~-~~~~ga~~~l~KP~~~~~L~~~i~~~ 118 (132)
T 3crn_A 79 IMVTGYASLENSV-F-SLNAGADAYIMKPVNPRDLLEKIKEK 118 (132)
T ss_dssp EEEESCCCHHHHH-H-HHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred EEEeccccHHHHH-H-HHhccchhhccCCCCHHHHHHHHHHH
Confidence 8776543222221 1 224588887653 667776665544
No 312
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=37.41 E-value=83 Score=22.14 Aligned_cols=70 Identities=16% Similarity=-0.092 Sum_probs=40.7
Q ss_pred HHhhccccEEEcCCCCCCch--HHHHHHh-------cCCcEEecCCCchhhhhH--HHHHHhcCC---C--C--ceecCH
Q psy15363 54 VRRGQLADVCLDTPLCNGHT--TSMDVLW-------TGTPVVTLPGETLASRVA--ASQLATLGC---P--E--LIARTH 115 (130)
Q Consensus 54 ~~~~~~~Dv~l~~~~~~~g~--~~lEAla-------~G~PvV~~~g~~~~~r~~--~~~l~~~g~---~--~--~va~~~ 115 (130)
..+...+|.|+- .|-+.|+ -++|++. .++|||.+....+..... ..+... |. . + .+++|+
T Consensus 126 ~~m~~~sda~Iv-lpGG~GTL~El~e~lt~~qlg~~~~kPvvll~~~~w~~l~~~l~~~~~~-Gfi~~~~~~~~~~~~~~ 203 (217)
T 1wek_A 126 VLFVRYAVGFVF-LPGGFGTLDELSEVLVLLQTEKVHRFPVFLLDRGYWEGLVRWLAFLRDQ-KAVGPEDLQLFRLTDEP 203 (217)
T ss_dssp HHHHHTEEEEEE-CSCCHHHHHHHHHHHHHHHTTSSCCCCEEEECHHHHHHHHHHHHHHHHT-TSSCTTGGGGSEEESCH
T ss_pred HHHHHhCCEEEE-eCCCCcHHHHHHHHHHHHhhCCCCCCCEEEeCcccchhHHHHHHHHHHC-CCCCHHHcCeEEEeCCH
Confidence 345567898873 3434454 3788887 479999987543332221 222221 32 1 1 467899
Q ss_pred HHHHHHHHHh
Q psy15363 116 KEYQDIAIRL 125 (130)
Q Consensus 116 ~~y~~~a~~l 125 (130)
++.++...+.
T Consensus 204 ~e~~~~l~~~ 213 (217)
T 1wek_A 204 EEVVQALKAE 213 (217)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9988877654
No 313
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=37.26 E-value=69 Score=22.28 Aligned_cols=107 Identities=12% Similarity=0.075 Sum_probs=53.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCC--CCEEEecCC----CHHH-HHHhhccc-----cEE-EcCCCCCCchHHHHH
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQ--HRILFSNVA----AKEE-HVRRGQLA-----DVC-LDTPLCNGHTTSMDV 78 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~--~rv~f~g~~----~~~~-~~~~~~~~-----Dv~-l~~~~~~~g~~~lEA 78 (130)
+.++.++.. + .+...+..++++|+.. +.+.....+ |..+ +...++.. +++ +.= +..+-+.-|
T Consensus 136 ~~~l~i~Tn-~-~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~vGD---s~~~Di~~A 210 (260)
T 2gfh_A 136 EVRLLLLTN-G-DRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGD---TLETDIQGG 210 (260)
T ss_dssp TSEEEEEEC-S-CHHHHHHHHHHHTCGGGCSEEEEGGGSSSCTTCHHHHHHHHHHHTCCGGGEEEEES---CTTTHHHHH
T ss_pred CCcEEEEEC-c-ChHHHHHHHHhcCHHhhhheEEecCCCCCCCCCHHHHHHHHHHcCCChhhEEEECC---CchhhHHHH
Confidence 367777764 2 3455666778888751 334443332 2222 33333222 221 211 112346668
Q ss_pred HhcCC-cEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhccCC
Q psy15363 79 LWTGT-PVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129 (130)
Q Consensus 79 la~G~-PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d~ 129 (130)
..+|. ++|.......... .....+.++.++..+..+...++...|
T Consensus 211 ~~aG~~~~i~v~~~~~~~~------~~~~~~~~~i~~~~el~~~l~~~~~~~ 256 (260)
T 2gfh_A 211 LNAGLKATVWINKSGRVPL------TSSPMPHYMVSSVLELPALLQSIDCKV 256 (260)
T ss_dssp HHTTCSEEEEECTTCCCCS------SCCCCCSEEESSGGGHHHHHHHHTTCC
T ss_pred HHCCCceEEEEcCCCCCcC------cccCCCCEEECCHHHHHHHHHHHhhCC
Confidence 88999 6665532211000 001234677788888888777766554
No 314
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=37.04 E-value=57 Score=21.03 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=25.0
Q ss_pred EEEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 14 ILWLLKFPAV----GEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 14 ~l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.++|.+.... ..+.++++++++|++.++++++...
T Consensus 115 ~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~~ 153 (160)
T 2hlv_A 115 LTELFVKGLNVEDEDLEKFWKLTEDKGIDKKNVVNFLEN 153 (160)
T ss_dssp EEEEEECSSSCCHHHHHHHHHHHHHTTCCGGGEEETTSC
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 4566775321 2457778899999998899987754
No 315
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A
Probab=36.88 E-value=1.2e+02 Score=23.72 Aligned_cols=35 Identities=11% Similarity=0.242 Sum_probs=24.5
Q ss_pred ccccEEEcCCC-CCCchHHHHHHhcCCcEEecCCCc
Q psy15363 58 QLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPGET 92 (130)
Q Consensus 58 ~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~~g~~ 92 (130)
..+|+++.... ..|=..+++|+-+|+-+..-+.+.
T Consensus 100 ~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaLANKEs 135 (406)
T 1q0q_A 100 EDVDQVMAAIVGAAGLLPTLAAIRAGKTILLANKES 135 (406)
T ss_dssp TTCCEEEECCSSGGGHHHHHHHHHTTCEEEECCHHH
T ss_pred CCCCEEEEccccHhHHHHHHHHHHCCCeEEEechHH
Confidence 35888887664 344467999999998876655443
No 316
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=36.86 E-value=46 Score=25.16 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=29.4
Q ss_pred hCC-CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH
Q psy15363 9 AVP-NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK 50 (130)
Q Consensus 9 ~~P-~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~ 50 (130)
..| +..+++.| +.+..+.+++.++++|++.+||++-.+-|.
T Consensus 352 ~~~~~~~vyvCG-p~~m~~~v~~~L~~~Gv~~~~i~~E~Fgp~ 393 (399)
T 4g1v_A 352 KSPAHADVYTCG-SLAFMQAMIGHLKELEHRDDMIHYEPFGPK 393 (399)
T ss_dssp HSCSSCEEEEEE-CHHHHHHHHHHHHHTTCCGGGEEEEESSCG
T ss_pred hCCCCCEEEEEC-CHHHHHHHHHHHHHcCCCHHHeeeeccCCc
Confidence 344 56666666 445667788888899998888988776654
No 317
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=36.83 E-value=90 Score=20.61 Aligned_cols=99 Identities=8% Similarity=0.035 Sum_probs=52.2
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCC--CCEEEecCC----CH-HHHHHhhccccEEEcCC-C---CC-CchHHHHHH
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQ--HRILFSNVA----AK-EEHVRRGQLADVCLDTP-L---CN-GHTTSMDVL 79 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~--~rv~f~g~~----~~-~~~~~~~~~~Dv~l~~~-~---~~-~g~~~lEAl 79 (130)
+.++.++.. .....++..++++|+.. +.+.....+ |. +-+..+++...+ ++. . .+ +.+-+.-|.
T Consensus 119 g~~~~i~T~--~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi--~~~~~~v~vGD~~~Di~~a~ 194 (231)
T 3kzx_A 119 NITMAIVSN--KNGERLRSEIHHKNLTHYFDSIIGSGDTGTIKPSPEPVLAALTNINI--EPSKEVFFIGDSISDIQSAI 194 (231)
T ss_dssp TCEEEEEEE--EEHHHHHHHHHHTTCGGGCSEEEEETSSSCCTTSSHHHHHHHHHHTC--CCSTTEEEEESSHHHHHHHH
T ss_pred CCeEEEEEC--CCHHHHHHHHHHCCchhheeeEEcccccCCCCCChHHHHHHHHHcCC--CcccCEEEEcCCHHHHHHHH
Confidence 467777763 34566777888888751 334443322 21 222222222211 111 0 11 234566677
Q ss_pred hcCCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 80 WTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 80 a~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
++|..+|....... -.+.++..+..+..+...+++
T Consensus 195 ~aG~~~v~~~~~~~------------~~~~~~~~~~~el~~~l~~~l 229 (231)
T 3kzx_A 195 EAGCLPIKYGSTNI------------IKDILSFKNFYDIRNFICQLI 229 (231)
T ss_dssp HTTCEEEEECC-----------------CCEEESSHHHHHHHHHHHH
T ss_pred HCCCeEEEECCCCC------------CCCceeeCCHHHHHHHHHHHh
Confidence 89988887643211 124567788888888777664
No 318
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=36.79 E-value=1.3e+02 Score=22.43 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=57.6
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEec------------------CCCHHHHHHhhccccEEEcCCCCCC
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSN------------------VAAKEEHVRRGQLADVCLDTPLCNG 71 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g------------------~~~~~~~~~~~~~~Dv~l~~~~~~~ 71 (130)
.|..++.|+|. |.-...+.+.++++|+ +|+.+. ..+.+.+..+...+|+....+ +.-
T Consensus 10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~---~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~-E~~ 84 (377)
T 3orq_A 10 KFGATIGIIGG-GQLGKMMAQSAQKMGY---KVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEF-ENI 84 (377)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESS-TTS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecc-ccc
Confidence 36778899996 4434456677888886 233332 223455667777789875333 233
Q ss_pred chHHHHHHhcCCcEEecCCCch----hhhh-HHHHHHhcCCCC---ceecCHHHHHHHHHH
Q psy15363 72 HTTSMDVLWTGTPVVTLPGETL----ASRV-AASQLATLGCPE---LIARTHKEYQDIAIR 124 (130)
Q Consensus 72 g~~~lEAla~G~PvV~~~g~~~----~~r~-~~~~l~~~g~~~---~va~~~~~y~~~a~~ 124 (130)
....++.+..-.++. ++... ..+. ...+++..|++- ....+.++..+.+.+
T Consensus 85 ~~~~l~~l~~~~~v~--p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~ 143 (377)
T 3orq_A 85 SAQQLKLLCEKYNIP--QGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIET 143 (377)
T ss_dssp CHHHHHHHHHHSCCT--TTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHH
T ss_pred CHHHHHHHhhhcCCC--CCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHH
Confidence 333444443322221 22211 2222 345677788863 345666666555444
No 319
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=36.70 E-value=98 Score=21.01 Aligned_cols=53 Identities=9% Similarity=0.032 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 24 GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 24 ~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
.++.++++++++|.. +....+. ..-+|....-........+.|++.|+|||+.
T Consensus 14 ~~~~l~~~~~~~G~~-----~~~~~~~-------~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~ 66 (210)
T 2nte_A 14 QQKMLSELAVILKAK-----KYTEFDS-------TVTHVVVPGDAVQSTLKCMLGILNGCWILKF 66 (210)
T ss_dssp HHHHHHHHHHHTTCE-----EESSCCT-------TCCEEEESSSSCCCSHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHcCCE-----EeCCCCC-------CCeEEEEcCCCcchHHHHHHHHhcCCEEecH
Confidence 466789999999852 1222221 1223444332234456788999999999974
No 320
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=36.54 E-value=1.1e+02 Score=21.73 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc-ccEE-EcCCCCCCchHHHHHHhc---CCcEEecCCCch
Q psy15363 27 NIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVC-LDTPLCNGHTTSMDVLWT---GTPVVTLPGETL 93 (130)
Q Consensus 27 ~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~-~Dv~-l~~~~~~~g~~~lEAla~---G~PvV~~~g~~~ 93 (130)
.+.+.++++|+ ..+.|-.+.+|..+.+.. +|++ ++|....+|...+.++.. .+|++...|-+.
T Consensus 118 ~vi~~~~~~gi----~~ipGv~TptEi~~A~~~Gad~vK~FPa~~~gG~~~lkal~~p~p~ip~~ptGGI~~ 185 (232)
T 4e38_A 118 NTVRACQEIGI----DIVPGVNNPSTVEAALEMGLTTLKFFPAEASGGISMVKSLVGPYGDIRLMPTGGITP 185 (232)
T ss_dssp HHHHHHHHHTC----EEECEECSHHHHHHHHHTTCCEEEECSTTTTTHHHHHHHHHTTCTTCEEEEBSSCCT
T ss_pred HHHHHHHHcCC----CEEcCCCCHHHHHHHHHcCCCEEEECcCccccCHHHHHHHHHHhcCCCeeeEcCCCH
Confidence 34555666554 355566677777766655 8877 644322357888888864 578888877543
No 321
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=36.38 E-value=1.2e+02 Score=23.06 Aligned_cols=117 Identities=11% Similarity=0.084 Sum_probs=66.3
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcC-CCCCCEEEecC----CCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcE
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALG-LDQHRILFSNV----AAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPV 85 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g-~~~~rv~f~g~----~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~Pv 85 (130)
++-.+.++|.+|.++..|-+.+.-+- -+..+|.|-|. .+..++..+-+..-+....+..-...|+.|-++.+.-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence 45677899988889999988877432 11247888774 23334432222211111112222345677766654321
Q ss_pred EecCCCc--hhhhhHHHHHHhcCCCCcee-------cCHHHHHHHHHHhccCCC
Q psy15363 86 VTLPGET--LASRVAASQLATLGCPELIA-------RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 86 V~~~g~~--~~~r~~~~~l~~~g~~~~va-------~~~~~y~~~a~~l~~d~e 130 (130)
.+.. -..+....++..+|+.++.. .....-+.+|..|+.+|+
T Consensus 133 ---~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~ 183 (366)
T 3tui_C 133 ---DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 183 (366)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCS
T ss_pred ---cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1111 11223456788889876543 235788999999999885
No 322
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=36.05 E-value=1.4e+02 Score=22.45 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=37.4
Q ss_pred HHHHHhh--ccccEEEcCCCCCC-chHHHHHH-hcCCcEEecCCCch---hhhh-HHHHHHhcCCCC---ceecCHHHHH
Q psy15363 51 EEHVRRG--QLADVCLDTPLCNG-HTTSMDVL-WTGTPVVTLPGETL---ASRV-AASQLATLGCPE---LIARTHKEYQ 119 (130)
Q Consensus 51 ~~~~~~~--~~~Dv~l~~~~~~~-g~~~lEAl-a~G~PvV~~~g~~~---~~r~-~~~~l~~~g~~~---~va~~~~~y~ 119 (130)
+.+..+. ..+|+.+..+ +.. -..+.+.+ ..|+|++..+.+.. .++. ...+++..|++- ...++.++..
T Consensus 51 ~~l~~~~~~~~~d~v~~~~-E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~ 129 (417)
T 2ip4_A 51 EALADWALAEGIDLTLVGP-EAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLEAL 129 (417)
T ss_dssp HHHHHHHHHHTCCEEEECS-SHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSHHHHH
T ss_pred HHHHHHHHHcCCCEEEECC-chHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCHHHHH
Confidence 3444444 3468776432 211 11233444 57999885432221 1222 446788888863 3456777665
Q ss_pred HHHHH
Q psy15363 120 DIAIR 124 (130)
Q Consensus 120 ~~a~~ 124 (130)
+.+.+
T Consensus 130 ~~~~~ 134 (417)
T 2ip4_A 130 AYLEE 134 (417)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 323
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=35.71 E-value=1.5e+02 Score=22.92 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=32.9
Q ss_pred HHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEEEcCCCCCCchHHHHHH-hcCCcEEec
Q psy15363 28 IQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVCLDTPLCNGHTTSMDVL-WTGTPVVTL 88 (130)
Q Consensus 28 l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~l~~~~~~~g~~~lEAl-a~G~PvV~~ 88 (130)
+.+.+.+.|++++-+.++..-+.+.-..+++. .|... ++|+..+..+. ..++|++..
T Consensus 153 ~~~a~~~aG~P~gvv~~v~g~~~~~~~~L~~~p~v~~V~----fTGs~~~~~~a~~~~kp~~~e 212 (452)
T 3my7_A 153 VLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALIL----ATGGPGMVKAAYSSGKPAIGV 212 (452)
T ss_dssp HHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTCCEEE----ECSCHHHHHHHHTSSSCEEEC
T ss_pred HHHHHHHcCCCcCcEEEEcCCCHHHHHHHHhCCCccEEE----EECcHHHHHHHHhcCCCEEec
Confidence 34445688998777777754333322334444 45555 55555555544 467888655
No 324
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=35.64 E-value=75 Score=19.32 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=60.5
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc---cccEE-EcCC-CC-CCchHHHHHHh--cCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ---LADVC-LDTP-LC-NGHTTSMDVLW--TGT 83 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~---~~Dv~-l~~~-~~-~~g~~~lEAla--~G~ 83 (130)
+.+++++.+.......+++.+++.|. +|.. ..+..+....+. ..|++ +|.. |. ..|..+++.+. -.+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~--~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~ 79 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGY---TVEI--ALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISEL 79 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTC---EEEE--ESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCC---EEEE--ecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCC
Confidence 35777887644456788888888775 3443 234455545442 46888 4543 44 45777776665 478
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
|+|.+.+..-..... -....|..+++.. +.+++.+...++
T Consensus 80 ~ii~ls~~~~~~~~~--~~~~~g~~~~l~KP~~~~~l~~~i~~~ 121 (140)
T 3h5i_A 80 PVVFLTAHTEPAVVE--KIRSVTAYGYVMKSATEQVLITIVEMA 121 (140)
T ss_dssp CEEEEESSSSCCCCG--GGGGSCEEEEEETTCCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHH--HHHhCCCcEEEeCCCCHHHHHHHHHHH
Confidence 998775532211111 0123466676653 566666655444
No 325
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=35.44 E-value=1.2e+02 Score=21.53 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=43.9
Q ss_pred HHHHHHHHcCC--CCCCEEEecCCCHHHHHHhhcc-ccEE-EcCCCCCCchHHHHHHhc---CCcEEecCCCc
Q psy15363 27 NIQATAQALGL--DQHRILFSNVAAKEEHVRRGQL-ADVC-LDTPLCNGHTTSMDVLWT---GTPVVTLPGET 92 (130)
Q Consensus 27 ~l~~~~~~~g~--~~~rv~f~g~~~~~~~~~~~~~-~Dv~-l~~~~~~~g~~~lEAla~---G~PvV~~~g~~ 92 (130)
.+.+.++++|+ +.+-..+.|-.+.+|..+.+.. +|++ ++|-...+|...+-++.. ++|++...|-+
T Consensus 97 evi~~~~~~~v~~~~~~~~~PG~~TptE~~~A~~~Gad~vK~FPa~~~gG~~~lkal~~p~p~i~~~ptGGI~ 169 (217)
T 3lab_A 97 ELIEKAKQVKLDGQWQGVFLPGVATASEVMIAAQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTGGIS 169 (217)
T ss_dssp HHHHHHHHHHHHCSCCCEEEEEECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEBSSCC
T ss_pred HHHHHHHHcCCCccCCCeEeCCCCCHHHHHHHHHcCCCEEEECccccccCHHHHHHHHhhhcCceEEEeCCCC
Confidence 45666777766 2334677788888887776655 8887 644333457788888875 45677776654
No 326
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=35.20 E-value=29 Score=24.80 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=16.8
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEe
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFS 45 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~ 45 (130)
..+++.| +....+.+++.++++|++.++|++-
T Consensus 256 ~~vyvCG-p~~m~~~v~~~l~~~G~~~~~i~~e 287 (290)
T 2r6h_A 256 IEYYMCG-PGPMANAVKGMLENLGVPRNMLFFD 287 (290)
T ss_dssp EEEEEEC-CHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cEEEEEC-CHHHHHHHHHHHHHcCCCHHHEEec
Confidence 3444444 3334455556666666665566553
No 327
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=35.15 E-value=69 Score=18.79 Aligned_cols=40 Identities=8% Similarity=-0.111 Sum_probs=18.6
Q ss_pred HHHHHhhccccEEEcCCCCCC-chHHHHHHhcCCcEEecCC
Q psy15363 51 EEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 51 ~~~~~~~~~~Dv~l~~~~~~~-g~~~lEAla~G~PvV~~~g 90 (130)
+++...+..+|+++...+... ....-.+...|++.+-..+
T Consensus 61 ~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 61 AGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp HHHHHHTTTCSEEEECSCGGGHHHHHHHHHHTTCEEECCCS
T ss_pred HHHHHHHcCCCEEEECCCchhhHHHHHHHHHhCCCEEEecC
Confidence 344444555666655544332 2223334455555554433
No 328
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=35.04 E-value=1.1e+02 Score=21.92 Aligned_cols=104 Identities=9% Similarity=-0.041 Sum_probs=60.1
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH----HHHHHhh--ccccEEEcCCCCCCchHHHHH---------
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK----EEHVRRG--QLADVCLDTPLCNGHTTSMDV--------- 78 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~----~~~~~~~--~~~Dv~l~~~~~~~g~~~lEA--------- 78 (130)
++++..+ ...++.|.+.+++.|..-..+...-.++. +++...+ ...|+.+.||+.+-- ..++.
T Consensus 158 ~vLi~r~-~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~~v~-~~~~~~~~~~~~~~ 235 (286)
T 3d8t_A 158 VAALQLY-GKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVE-FLFEGAKDPKALRE 235 (286)
T ss_dssp EEEEECS-SSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHH-HHHHHCSCHHHHHH
T ss_pred eEEEEcc-CcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHHHHH-HHHHHHHhccchhh
Confidence 5555443 34567788888999975444433323321 2233334 347999888764311 01111
Q ss_pred Hhc-CCcEEecCCCchhhhhHHHHHHhcCCCC-cee--cCHHHHHHHHHHh
Q psy15363 79 LWT-GTPVVTLPGETLASRVAASQLATLGCPE-LIA--RTHKEYQDIAIRL 125 (130)
Q Consensus 79 la~-G~PvV~~~g~~~~~r~~~~~l~~~g~~~-~va--~~~~~y~~~a~~l 125 (130)
... ++++++.. ..++..++..|+.. .++ .+.+++++...+.
T Consensus 236 ~l~~~~~i~aIG------~~TA~al~~~G~~~~~~a~~~~~~~L~~~l~~~ 280 (286)
T 3d8t_A 236 ALNTRVKALAVG------RVTADALREWGVKPFYVDETERLGSLLQGFKRA 280 (286)
T ss_dssp HHTTTSEEEEES------HHHHHHHHHTTCCCSEEECSSCHHHHHHHHHHH
T ss_pred HhhcCCEEEEEC------HHHHHHHHHcCCCceEEeCCCCHHHHHHHHHHH
Confidence 123 67888753 34677888889975 444 4778887776654
No 329
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=34.95 E-value=37 Score=22.30 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=44.4
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCC--CEEEecCCCHHH-HHHhhcccc-----EE-EcCCCCCCchHHHHHHhcCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQH--RILFSNVAAKEE-HVRRGQLAD-----VC-LDTPLCNGHTTSMDVLWTGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~--rv~f~g~~~~~~-~~~~~~~~D-----v~-l~~~~~~~g~~~lEAla~G~ 83 (130)
.++.++.. .....++..++++|+. + ..++...-|..+ +..+..... ++ +.=.+ .+-+.-|..+|.
T Consensus 123 ~~~~i~t~--~~~~~~~~~l~~~~~~-~~f~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~iGD~~---~~Di~~a~~aG~ 196 (234)
T 3ddh_A 123 YKLVVATK--GDLLDQENKLERSGLS-PYFDHIEVMSDKTEKEYLRLLSILQIAPSELLMVGNSF---KSDIQPVLSLGG 196 (234)
T ss_dssp CEEEEEEE--SCHHHHHHHHHHHTCG-GGCSEEEEESCCSHHHHHHHHHHHTCCGGGEEEEESCC---CCCCHHHHHHTC
T ss_pred eEEEEEeC--CchHHHHHHHHHhCcH-hhhheeeecCCCCHHHHHHHHHHhCCCcceEEEECCCc---HHHhHHHHHCCC
Confidence 56666653 3345566667777764 2 223333444332 333333222 22 21111 122444666788
Q ss_pred cEEecCCC-chhhhhHHHHHHhcCCC-CceecCHHHHHH
Q psy15363 84 PVVTLPGE-TLASRVAASQLATLGCP-ELIARTHKEYQD 120 (130)
Q Consensus 84 PvV~~~g~-~~~~r~~~~~l~~~g~~-~~va~~~~~y~~ 120 (130)
++|..... .+..... . ....+ .++.++..+..+
T Consensus 197 ~~v~v~~~~~~g~~~~-~---~~~~~~d~v~~~l~el~~ 231 (234)
T 3ddh_A 197 YGVHIPFEVMWKHEVT-E---TFAHERLKQVKRLDDLLS 231 (234)
T ss_dssp EEEECCCCTTCCCC-------CCCCTTEEECSSGGGHHH
T ss_pred eEEEecCCcccccCCc-c---cccCCCceecccHHHHHH
Confidence 88875322 1111100 0 01223 577777777654
No 330
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=34.85 E-value=69 Score=18.72 Aligned_cols=107 Identities=13% Similarity=0.088 Sum_probs=60.8
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh--cCCcEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW--TGTPVV 86 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla--~G~PvV 86 (130)
.+++++.+.......+++.+++.|. .+.... +..+....+. ..|+. +|. .|...|..+++.+. ..+|+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~---~v~~~~--~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii 77 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGY---TVSVTA--SGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGII 77 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCC---eEEEec--CHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEE
Confidence 3567777543346678888877664 344332 3345444443 36887 454 35556777777774 468888
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
...+..-..... ..+ ..|..+++.. +.+++.+...++.
T Consensus 78 ~~s~~~~~~~~~-~~~-~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 78 LVTGRSDRIDRI-VGL-EMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp EEESSCCHHHHH-HHH-HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEECCCChhhHH-HHH-HhCHHHHccCCCCHHHHHHHHHHHH
Confidence 775543222211 112 3488887653 6677766655543
No 331
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=34.85 E-value=58 Score=22.73 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=24.6
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCC-------CEEEecCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQH-------RILFSNVA 48 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~-------rv~f~g~~ 48 (130)
+..+++.| +....+.+++.++++|++.+ +|.+-.+.
T Consensus 212 ~~~vyvCG-p~~m~~~v~~~l~~~G~~~~~~~~~~~~i~~E~~w 254 (257)
T 2qdx_A 212 DDRAMICG-SPSMLEETSAVLDSFGLKISPRMGEPGDYLIERAF 254 (257)
T ss_dssp TEEEEEEE-CHHHHHHHHHHHHHTTCCBCSSTTSCBSEEEEESC
T ss_pred CCEEEEEC-CHHHHHHHHHHHHHcCCChHHhcCCCCcEEEeeee
Confidence 46666666 44556677888888898866 77776553
No 332
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=34.49 E-value=58 Score=24.61 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHhcCCcEEecCCCchhhhhH-HHHHHhcCCCCceecCHHHHHHHH
Q psy15363 76 MDVLWTGTPVVTLPGETLASRVA-ASQLATLGCPELIARTHKEYQDIA 122 (130)
Q Consensus 76 lEAla~G~PvV~~~g~~~~~r~~-~~~l~~~g~~~~va~~~~~y~~~a 122 (130)
+=+-+||+||+-..++...++.+ +-+|..+|++ +..++++..+..
T Consensus 102 ~v~Aa~G~~V~khG~r~~ss~~GsaD~LeaLG~~--~~ls~~~~~~~l 147 (346)
T 4hkm_A 102 FVAAAGGAKVAKHGNRSVSSKSGSADALEALGAV--IELQPEQVAASL 147 (346)
T ss_dssp HHHHHTTCEEEEEC---------CHHHHHTTTCC--CCCCHHHHHHHH
T ss_pred HHHHhcCCCeeecCCCCCCCCcCHHHHHHHcCCC--cccCHHHHHHHH
Confidence 34557999999998887777654 6788888876 345666665544
No 333
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=34.18 E-value=94 Score=24.11 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=46.0
Q ss_pred hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC----C-H----------------------HHHHHhhcccc
Q psy15363 9 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA----A-K----------------------EEHVRRGQLAD 61 (130)
Q Consensus 9 ~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~----~-~----------------------~~~~~~~~~~D 61 (130)
..++.+++++|. |..-..+.+++...|. ++|.+..+. . + .++...+..+|
T Consensus 189 ~l~~~kVVv~GA-GaAG~~iAkll~~~G~--~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~AD 265 (388)
T 1vl6_A 189 KIEEVKVVVNGI-GAAGYNIVKFLLDLGV--KNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD 265 (388)
T ss_dssp CTTTCEEEEECC-SHHHHHHHHHHHHHTC--CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCS
T ss_pred CCCCcEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCC
Confidence 567899999996 5544456666777786 577777654 1 1 12556667789
Q ss_pred EEEcCCC-CCCchHHHHHHhcCCcEE
Q psy15363 62 VCLDTPL-CNGHTTSMDVLWTGTPVV 86 (130)
Q Consensus 62 v~l~~~~-~~~g~~~lEAla~G~PvV 86 (130)
+++-.+. --..--.++.|+- -|||
T Consensus 266 VlIG~Sap~l~t~emVk~Ma~-~pII 290 (388)
T 1vl6_A 266 FFIGVSRGNILKPEWIKKMSR-KPVI 290 (388)
T ss_dssp EEEECSCSSCSCHHHHTTSCS-SCEE
T ss_pred EEEEeCCCCccCHHHHHhcCC-CCEE
Confidence 9986553 2223345666653 4544
No 334
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=34.07 E-value=60 Score=23.80 Aligned_cols=76 Identities=8% Similarity=-0.041 Sum_probs=42.2
Q ss_pred CCCcEEEEeecCcc-cHHHHHHHHHHcCCCCCCEEEecC---------CC-HHHHHHhhc--cccEEEcCCC-CCCchHH
Q psy15363 10 VPNSILWLLKFPAV-GEANIQATAQALGLDQHRILFSNV---------AA-KEEHVRRGQ--LADVCLDTPL-CNGHTTS 75 (130)
Q Consensus 10 ~P~a~l~i~g~~~~-~~~~l~~~~~~~g~~~~rv~f~g~---------~~-~~~~~~~~~--~~Dv~l~~~~-~~~g~~~ 75 (130)
.|+.+.+++|-.+. .+.. .+.+.+.|.. .|.-..+ ++ +..+..+.. .+|+.++..| ....-.+
T Consensus 11 ~~~~~v~V~Gasg~~G~~~-~~~l~~~g~~--~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~v 87 (294)
T 2yv1_A 11 DENTKAIVQGITGRQGSFH-TKKMLECGTK--IVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKDAV 87 (294)
T ss_dssp CTTCCEEEETTTSHHHHHH-HHHHHHTTCC--EEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHH-HHHHHhCCCe--EEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHHH
Confidence 47888888885332 3333 4444555642 2211111 11 122233334 6899976544 4456778
Q ss_pred HHHHhcCCc-EEec
Q psy15363 76 MDVLWTGTP-VVTL 88 (130)
Q Consensus 76 lEAla~G~P-vV~~ 88 (130)
.||...|++ +|..
T Consensus 88 ~ea~~~Gi~~vVi~ 101 (294)
T 2yv1_A 88 FEAIDAGIELIVVI 101 (294)
T ss_dssp HHHHHTTCSEEEEC
T ss_pred HHHHHCCCCEEEEE
Confidence 999999999 5543
No 335
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=33.58 E-value=78 Score=18.91 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=60.0
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcCC-CCCCchHHHHHHh---cCCcE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDTP-LCNGHTTSMDVLW---TGTPV 85 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~~-~~~~g~~~lEAla---~G~Pv 85 (130)
.+++++.+.......++..+.+.|. +|.... +..+....+. ..|++ +|.. |...|..+++.+. ..+|+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~i 78 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGY---DVITAS--DGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPI 78 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCc---EEEEec--CHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCE
Confidence 4677777643346677788887765 344332 3344434332 36887 4543 4445777777664 46888
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
|...+..-..... . ....|..+++.. +.+++.....++.
T Consensus 79 i~~s~~~~~~~~~-~-~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (136)
T 1mvo_A 79 LMLTAKDEEFDKV-L-GLELGADDYMTKPFSPREVNARVKAIL 119 (136)
T ss_dssp EEEECTTCCCCHH-H-HHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHH-H-HHhCCCCEEEECCCCHHHHHHHHHHHH
Confidence 8775432221111 1 224588776653 6677766665544
No 336
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=33.56 E-value=59 Score=22.58 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=40.7
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCE-EEecCCC-----HHHHHHhh-ccccEEEcCCCCC-CchHHHHHHhcCCcE
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRI-LFSNVAA-----KEEHVRRG-QLADVCLDTPLCN-GHTTSMDVLWTGTPV 85 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv-~f~g~~~-----~~~~~~~~-~~~Dv~l~~~~~~-~g~~~lEAla~G~Pv 85 (130)
++-++|-+..++...+.+. +.|. ++ ....+-+ ..++..++ ..+|+.+...|.. .--.+.+++..|++|
T Consensus 2 ~vgiIG~G~mG~~~~~~l~-~~g~---~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~v 77 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLE-RNGF---EIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDL 77 (236)
T ss_dssp EEEEECCSHHHHHHHHHHH-HTTC---EEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCHHHHHHHHHHh-cCCC---EEEEEEecCcchhhhcCCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcE
Confidence 4567886333444444443 4443 22 2222211 11233344 5799998766532 344567899999999
Q ss_pred EecCC
Q psy15363 86 VTLPG 90 (130)
Q Consensus 86 V~~~g 90 (130)
|+.+.
T Consensus 78 v~~~~ 82 (236)
T 2dc1_A 78 IVLST 82 (236)
T ss_dssp EESCG
T ss_pred EEECc
Confidence 98753
No 337
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=33.50 E-value=1.3e+02 Score=21.42 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEec-CCCHHHHHHhhc--cccEEEcCCCCCCch----HHHHHH---hcCCcEEecCCCchh
Q psy15363 25 EANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQ--LADVCLDTPLCNGHT----TSMDVL---WTGTPVVTLPGETLA 94 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g-~~~~~~~~~~~~--~~Dv~l~~~~~~~g~----~~lEAl---a~G~PvV~~~g~~~~ 94 (130)
..-+...++.+|. +|+.+| .+|.+++..... .+|++.-++..+... .+++.+ ...+||+.-.. ...
T Consensus 140 ~~iva~~L~~~G~---~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~vGG~-~~~ 215 (258)
T 2i2x_B 140 KNIVTALLRANGY---NVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFACGGG-AVN 215 (258)
T ss_dssp HHHHHHHHHHTTC---EEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEEEST-TCC
T ss_pred HHHHHHHHHHCCC---EEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEEECc-cCC
Confidence 4456677889886 577776 478888766554 478885554332222 244444 23477776432 222
Q ss_pred hhhHHHHHHhcCCCCceecCHHHHHHHHHHhccC
Q psy15363 95 SRVAASQLATLGCPELIARTHKEYQDIAIRLGTD 128 (130)
Q Consensus 95 ~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~d 128 (130)
..+...+|. +..+.|..+-++.+.++.+.
T Consensus 216 ----~~~~~~iga-d~~~~da~~av~~~~~l~~~ 244 (258)
T 2i2x_B 216 ----QDFVSQFAL-GVYGEEAADAPKIADAIIAG 244 (258)
T ss_dssp ----HHHHHTSTT-EEECSSTTHHHHHHHHHHTT
T ss_pred ----HHHHHHcCC-eEEECCHHHHHHHHHHHHcc
Confidence 223345564 45567777888888887754
No 338
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=33.41 E-value=1.2e+02 Score=21.02 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=64.2
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHh---cCCc
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLW---TGTP 84 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla---~G~P 84 (130)
+.+++++.++...+..+++.+++.|. +|...... .+....++ ..|+.+ |- .|...|..+++.+. ..+|
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~---~v~~a~~~--~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~p 203 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGY---QCKTANDG--VDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLP 203 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTS---EEEEECCS--HHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC---EEEEECCH--HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCc
Confidence 35778888654456778888888886 35544333 34434333 368874 43 45556776666653 4799
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
||.+.+....... .-....|..+++.. +.+++.+...+++
T Consensus 204 iI~lt~~~~~~~~--~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 245 (254)
T 2ayx_A 204 VIGVTANALAEEK--QRCLESGMDSCLSKPVTLDVIKQTLTLYA 245 (254)
T ss_dssp EEEEESSTTSHHH--HHHHHCCCEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHH--HHHHHcCCceEEECCCCHHHHHHHHHHHH
Confidence 9988664332221 12234688887663 5677766655543
No 339
>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A
Probab=33.20 E-value=47 Score=22.69 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=32.0
Q ss_pred HHHHHhhCCCcEEEEeecCc---c-------c-------H-HHHHHHHHHcCCCCCCE-EEecCCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPA---V-------G-------E-ANIQATAQALGLDQHRI-LFSNVAA 49 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~---~-------~-------~-~~l~~~~~~~g~~~~rv-~f~g~~~ 49 (130)
.+.+++.+|+ .+.|.|... . . + ..+++++.+.|++++|+ ...|+-.
T Consensus 82 ia~~L~~~~~-~I~I~GHTD~~g~~~~~~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~~G~G~ 146 (183)
T 2zvy_A 82 IAPVLNGIPN-RISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAA 146 (183)
T ss_dssp HHHHHTTSCC-CEEEEEECCSSCTTCSTTSSCHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEECTT
T ss_pred HHHHHHhCCC-eEEEEEEeCCCCCccccccccHHHHHHHHHHHHHHHHHHcCCCHHHhheeEEecc
Confidence 5678889998 888888521 1 1 1 14556677789998999 6877653
No 340
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=33.09 E-value=1.1e+02 Score=20.46 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----c-EEEcCCCCC-CchHHHHHHh-cCCcEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVLW-TGTPVVTL 88 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----D-v~l~~~~~~-~g~~~lEAla-~G~PvV~~ 88 (130)
+.+++.++++|+ .+.|.-.=...++..+++.+ | +.++|--|+ .+..+.+|++ .++|+|=.
T Consensus 34 ~~l~~~a~~~g~---~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEV 100 (146)
T 1h05_A 34 ALIEREAAELGL---KAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEV 100 (146)
T ss_dssp HHHHHHHHHTTC---EEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEE
T ss_pred HHHHHHHHHcCC---EEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCCCCEEEE
Confidence 466777788886 47777666666777666654 4 568887776 5788999986 57999844
No 341
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=32.97 E-value=88 Score=23.27 Aligned_cols=43 Identities=5% Similarity=-0.120 Sum_probs=33.2
Q ss_pred CHHHHHHhhccccEEEcCCCCCC-chHHHHHHhcCCcEEecCCC
Q psy15363 49 AKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 49 ~~~~~~~~~~~~Dv~l~~~~~~~-g~~~lEAla~G~PvV~~~g~ 91 (130)
+.+++..+++.+|+++.+.|... ...+-.|+..|+.+|.+...
T Consensus 67 d~~~l~~~~~~~DvVi~~~p~~~~~~v~~~~~~~g~~yvD~s~~ 110 (365)
T 3abi_A 67 NFDKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVSFM 110 (365)
T ss_dssp CHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTCEEEECCCC
T ss_pred CHHHHHHHHhCCCEEEEecCCcccchHHHHHHhcCcceEeeecc
Confidence 46778888899999998876544 44566778999999988654
No 342
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=32.86 E-value=96 Score=23.99 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=46.2
Q ss_pred CcEEEEeecCcccH-HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHH-HhcCCcEEecC
Q psy15363 12 NSILWLLKFPAVGE-ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDV-LWTGTPVVTLP 89 (130)
Q Consensus 12 ~a~l~i~g~~~~~~-~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEA-la~G~PvV~~~ 89 (130)
+-.+-++|.-.++. ..+++++++.|+. -++.+.+. +.+|+. .+..|.+.+-..++.. .+.+. --.|+|.+..+
T Consensus 183 ~~~VNilG~~~~~~~~eik~lL~~~Gi~-v~~~~~~~-~~~ei~-~~~~A~~niv~~~~~~--~~A~~Le~~GiP~i~~~ 257 (437)
T 3aek_A 183 AAELIVVGALPDVVEDQCLSLLTQLGVG-PVRMLPAR-RSDIEP-AVGPNTRFILAQPFLG--ETTGALERRGAKRIAAP 257 (437)
T ss_dssp CCCEEEESCCCHHHHHHHHHHHHHTTCC-CEEEESCS-SGGGCC-CBCTTCEEEESSTTCH--HHHHHHHHTTCEECCCC
T ss_pred CCcEEEEeCCChhHHHHHHHHHHHcCCc-eEEEcCCC-CHHHHH-hhhcCcEEEEECccHH--HHHHHHHHcCCCeEecC
Confidence 34566777422233 6899999999996 44555554 667774 4566777766666542 22222 45799999863
No 343
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=32.79 E-value=74 Score=18.39 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=57.2
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcCC-CCCCchHHHHHHh---cCCcEE
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDTP-LCNGHTTSMDVLW---TGTPVV 86 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~~-~~~~g~~~lEAla---~G~PvV 86 (130)
+++++.+....++.+++.+++.|. +|.... +.++....+. ..|+. +|.. |...|..+++.+. ..+|+|
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~---~v~~~~--~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii 77 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGY---EIDTAE--NGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKII 77 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCC---EEEEeC--CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEE
Confidence 566777543456778888887765 344333 3344444443 36877 4543 4445777777664 468888
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
...+..-.. . -....|..+++.. +.+++.+...++
T Consensus 78 ~~s~~~~~~---~-~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 78 LLTAYSHYR---S-DMSSWAADEYVVKSFNFDELKEKVKKL 114 (116)
T ss_dssp EEESCGGGG---G-CGGGGGSSEEEECCSSTHHHHHHHHHH
T ss_pred EEECCcchH---H-HHHhccccceEECCCCHHHHHHHHHHH
Confidence 775542211 1 1123466676653 556666555443
No 344
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=32.61 E-value=84 Score=24.10 Aligned_cols=74 Identities=9% Similarity=-0.042 Sum_probs=37.2
Q ss_pred HHHHHHhhcc--ccEEEcCCCCC-CchHHHHHH-hcCCcEEecCCCch---hhh-hHHHHHHhcCCCC---ceecCHHHH
Q psy15363 50 KEEHVRRGQL--ADVCLDTPLCN-GHTTSMDVL-WTGTPVVTLPGETL---ASR-VAASQLATLGCPE---LIARTHKEY 118 (130)
Q Consensus 50 ~~~~~~~~~~--~Dv~l~~~~~~-~g~~~lEAl-a~G~PvV~~~g~~~---~~r-~~~~~l~~~g~~~---~va~~~~~y 118 (130)
.+.+..+.+. .|+.+.. ++. .-..+.+.+ ..|+|++..+.... .++ ....+++..|++- .+.++.++.
T Consensus 56 ~~~l~~~a~~~~id~vv~g-~e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea 134 (431)
T 3mjf_A 56 IAGLLAFAQSHDIGLTIVG-PEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAA 134 (431)
T ss_dssp HHHHHHHHHHTTEEEEEEC-SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHHHH
T ss_pred HHHHHHHHHHhCcCEEEEC-CchHHHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCHHHH
Confidence 3445555444 6766532 211 001233333 47999984332211 122 2456778888873 345677766
Q ss_pred HHHHHH
Q psy15363 119 QDIAIR 124 (130)
Q Consensus 119 ~~~a~~ 124 (130)
.+.+.+
T Consensus 135 ~~~~~~ 140 (431)
T 3mjf_A 135 LAYVRQ 140 (431)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 345
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=32.41 E-value=70 Score=23.13 Aligned_cols=33 Identities=21% Similarity=0.127 Sum_probs=26.1
Q ss_pred cccEEEcCCCCCCchHHHHHHhcCCcEEecCCCc
Q psy15363 59 LADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET 92 (130)
Q Consensus 59 ~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~ 92 (130)
.-|++||+|- +.|+++++|+..|.-++...-..
T Consensus 235 ~~~~vlD~f~-GsGt~~~~a~~~g~~~~g~e~~~ 267 (297)
T 2zig_A 235 VGDVVLDPFA-GTGTTLIAAARWGRRALGVELVP 267 (297)
T ss_dssp TTCEEEETTC-TTTHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEECCC-CCCHHHHHHHHcCCeEEEEeCCH
Confidence 4688999873 56888999999999988876543
No 346
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=32.38 E-value=38 Score=24.78 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=23.7
Q ss_pred ccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 58 QLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 58 ~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
+.=|+.+-.-|..-...+.||...|+|||+.
T Consensus 157 ~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIai 187 (256)
T 2vqe_B 157 RLPDAIFVVDPTKEAIAVREARKLFIPVIAL 187 (256)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHHTTCCCEEC
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEE
Confidence 3566665444555568999999999999987
No 347
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=32.32 E-value=19 Score=25.74 Aligned_cols=37 Identities=5% Similarity=-0.051 Sum_probs=21.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA 49 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~ 49 (130)
+..+++.| +....+.+++.++++|++.+++.+.+++.
T Consensus 226 ~~~vyvCG-p~~m~~~v~~~l~~~G~~~~~i~~~~~i~ 262 (272)
T 2bgi_A 226 TDRAMVCG-SLAFNVDVMKVLESYGLREGANSEPREFV 262 (272)
T ss_dssp TEEEEEEE-CHHHHHHHHHHHHTTTCCBCBTTBCBSEE
T ss_pred CcEEEEEC-CHHHHHHHHHHHHHcCCChHHcCCccceE
Confidence 45555555 34445666777777777766665555443
No 348
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=32.24 E-value=1e+02 Score=21.80 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=36.9
Q ss_pred hhCC-CcEEEEeecCcccHHHHHHHHHHcCC------------------CCCCEEEecCCCHHHHHHhhccccEEE
Q psy15363 8 KAVP-NSILWLLKFPAVGEANIQATAQALGL------------------DQHRILFSNVAAKEEHVRRGQLADVCL 64 (130)
Q Consensus 8 ~~~P-~a~l~i~g~~~~~~~~l~~~~~~~g~------------------~~~rv~f~g~~~~~~~~~~~~~~Dv~l 64 (130)
+..| +.++-+-. .+....+...++++.|+ ++.+|.|.. ++..++.+.+..+|..+
T Consensus 96 ~dL~~G~~Iaip~-d~sn~~ral~lL~~aGli~l~~~~~~~~t~~dI~~np~~v~~~~-l~~~~~~~al~~VDaa~ 169 (241)
T 1xs5_A 96 SDFPAGAVIAIPN-DSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQNVRNVVLQE-VESALLPRVFDQVDGAV 169 (241)
T ss_dssp GGCCTTCEEEEEC-SHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEECTTCCEEEE-ECGGGHHHHGGGSSEEE
T ss_pred HHcCCCCEEEEeC-CCchHHHHHHHHHHCCCEEecCCCCCccChhhhhcCCCceEEEE-eCHHHHHHhhhccCEEE
Confidence 3453 44543332 22344566678899998 567899987 55567788888999986
No 349
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=32.18 E-value=44 Score=24.88 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=27.3
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHH-HHHHcCCCCCCEEEec-CCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQA-TAQALGLDQHRILFSN-VAA 49 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~-~~~~~g~~~~rv~f~g-~~~ 49 (130)
..|.+..|++.+++++. |.. .+-. ..+..|++++||+=++ .++
T Consensus 103 ~~i~~~~p~a~vivvtN--Pvd-~~t~~~~k~~g~p~~rviG~~t~LD 147 (314)
T 3nep_X 103 EQFVEGSPDSTIIVVAN--PLD-VMTYVAYEASGFPTNRVMGMAGVLD 147 (314)
T ss_dssp HHHHTTCTTCEEEECCS--SHH-HHHHHHHHHHTCCGGGEEECCHHHH
T ss_pred HHHHHhCCCcEEEecCC--chh-HHHHHHHHhcCCChHHEEeecCchH
Confidence 35566779999988884 321 1222 2334588878888877 554
No 350
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=31.93 E-value=71 Score=20.60 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=24.5
Q ss_pred EEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 15 LWLLKFPAV----GEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 15 l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
++|++.... ..+.+++.++++|++.++++++...
T Consensus 118 ~~llsR~~~~~~~~~~~f~~~~~~~G~~~~~i~~~~q~ 155 (162)
T 3o22_A 118 ATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIVFLPQT 155 (162)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHHHTTCCGGGEEECCBC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 466775321 2467778899999998899988754
No 351
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=31.78 E-value=78 Score=18.34 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=56.6
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh--ccccEE-EcCC-CCCCchHHHHHHh--cCCcEEe
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG--QLADVC-LDTP-LCNGHTTSMDVLW--TGTPVVT 87 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~--~~~Dv~-l~~~-~~~~g~~~lEAla--~G~PvV~ 87 (130)
+++++.+.......+++.+++.|. ++.... +..+....+ ...|++ +|.. |...|..+++.+. ..+|+|.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~---~v~~~~--~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~ 77 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGM---RVFEAE--TLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIV 77 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTC---EEEEES--SHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCC---EEEEeC--CHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEE
Confidence 466777543345677777776654 343322 223322222 246887 4542 4445777777774 4688887
Q ss_pred cCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 88 LPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 88 ~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
..+..-...... .+ ..|..+++.. +.+++.+...+.
T Consensus 78 ~s~~~~~~~~~~-~~-~~g~~~~l~Kp~~~~~l~~~i~~~ 115 (121)
T 1zh2_A 78 LSARSEESDKIA-AL-DAGADDYLSKPFGIGELQARLRVA 115 (121)
T ss_dssp EESCCSHHHHHH-HH-HHTCSEEEESSCCHHHHHHHHHHH
T ss_pred EECCCCHHHHHH-HH-hcCCCeEEeCCcCHHHHHHHHHHH
Confidence 755432222211 12 3477777653 566666655443
No 352
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=31.60 E-value=1.1e+02 Score=21.24 Aligned_cols=104 Identities=9% Similarity=-0.038 Sum_probs=59.3
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH----HHHHHhh--ccccEEEcCCCCCCchHHHHH---------
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK----EEHVRRG--QLADVCLDTPLCNGHTTSMDV--------- 78 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~----~~~~~~~--~~~Dv~l~~~~~~~g~~~lEA--------- 78 (130)
++++..+ ...++.|.+.+++.|..-..+...-..+. +++...+ ...|..+.+|+.+-- ..++.
T Consensus 133 ~vL~~r~-~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~~v~-~~~~~~~~~~~~~~ 210 (261)
T 1wcw_A 133 VAALQLY-GKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVE-FLFEGAKDPKALRE 210 (261)
T ss_dssp EEEEECC-SSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHH-HHHHHCSCHHHHHH
T ss_pred eEEEEcc-CcccHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHHHHH-HHHHHHhhccchhH
Confidence 5555442 34567788888998965333333322321 2233334 357999888764311 01111
Q ss_pred Hhc-CCcEEecCCCchhhhhHHHHHHhcCCCCc-ee--cCHHHHHHHHHHh
Q psy15363 79 LWT-GTPVVTLPGETLASRVAASQLATLGCPEL-IA--RTHKEYQDIAIRL 125 (130)
Q Consensus 79 la~-G~PvV~~~g~~~~~r~~~~~l~~~g~~~~-va--~~~~~y~~~a~~l 125 (130)
... ++++++.. ..++..++..|+... ++ .+.+++++...+.
T Consensus 211 ~l~~~~~~~aIG------~~Ta~~l~~~G~~~~~~a~~~~~~~l~~~l~~~ 255 (261)
T 1wcw_A 211 ALNTRVKALAVG------RVTADALREWGVKPFYVDETERLGSLLQGFKRA 255 (261)
T ss_dssp HHHHTSEEEEES------HHHHHHHHHTTCCCSEEECSCCHHHHHHHHHHH
T ss_pred HhhcCCEEEEEC------HHHHHHHHHcCCCCceecCCCCHHHHHHHHHHH
Confidence 123 77888753 346777888899754 44 4778887766554
No 353
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=31.46 E-value=39 Score=24.80 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=24.6
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNV 47 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~ 47 (130)
.+..+++.|. .+..+.+++.++++|++.++|++-.+
T Consensus 300 ~~~~vy~CGp-~~m~~~v~~~l~~~G~~~~~i~~e~F 335 (338)
T 1krh_A 300 GEVDVYLCGP-VPMVEAVRSWLDTQGIQPANFLFEKF 335 (338)
T ss_dssp GCSEEEEEEE-HHHHHHHHHHHHHHTCCCSEEEEEEE
T ss_pred CCcEEEEECC-HHHHHHHHHHHHHcCCCHHHEEEEee
Confidence 3566666663 45556777777888988778876554
No 354
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=31.45 E-value=94 Score=19.18 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=61.8
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHh---cCCcE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLW---TGTPV 85 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla---~G~Pv 85 (130)
.+++++.+.......+++.+++.|. +|.... +.++....+. ..|+++ |. .+...|..+++.+. ..+||
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 89 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPY---TLHFAR--DATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTR 89 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSC---EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEE
T ss_pred ceEEEECCCHHHHHHHHHHhcccCc---EEEEEC--CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeE
Confidence 5777887643446677788877664 344333 3345444443 368884 54 35556777776654 47899
Q ss_pred EecCCCchhhhhHHHHHHhcC-CCCceec--CHHHHHHHHHHhc
Q psy15363 86 VTLPGETLASRVAASQLATLG-CPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g-~~~~va~--~~~~y~~~a~~l~ 126 (130)
|.+.+..-..... ..+ ..| ..+++.. +.+++.....+++
T Consensus 90 i~~s~~~~~~~~~-~~~-~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 90 ILLTGDPDLKLIA-KAI-NEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp EEECCCCCHHHHH-HHH-HTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHH-HHH-hCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 9887653322222 122 346 7776653 6677766655543
No 355
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=31.41 E-value=93 Score=19.14 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=60.1
Q ss_pred CcEEEEeecCcccHHHHHHHHHH-cCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cCC-CCCCchHHHHHHh---cCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQA-LGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DTP-LCNGHTTSMDVLW---TGT 83 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~-~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~~-~~~~g~~~lEAla---~G~ 83 (130)
..+++++.+.......+++.+++ .|. .+.. ...+..+....+. ..|+++ |.. +...|..+++.+. ..+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~---~v~~-~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~ 80 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGY---AVVA-EAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAA 80 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTE---EEEE-EESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTC
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCc---EEEE-EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 45777887643345667777665 343 2221 1223344444443 368884 543 4445666666654 478
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|||.+.+..-..... -....|..+++.. +.+++.+...++..
T Consensus 81 ~ii~ls~~~~~~~~~--~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 81 RILIFTMHQGSAFAL--KAFEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp CEEEEESCCSHHHHH--HHHHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred eEEEEECCCCHHHHH--HHHHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 988876543322221 1224688887653 56677666665544
No 356
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A
Probab=31.31 E-value=77 Score=20.44 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=25.3
Q ss_pred EEEeecCc----ccHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 15 LWLLKFPA----VGEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 15 l~i~g~~~----~~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
++|++... ...+.++++++++|++.++++++...
T Consensus 109 ~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~q~ 146 (162)
T 1xki_A 109 VKLVGRDPKNNLEALEDFEKAAGARGLSTESILIPRQS 146 (162)
T ss_dssp EEEEESSSSCCCCCHHHHHHHHHHTTCTTSCEECCSCC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEecCCC
Confidence 46777532 13678899999999998899887654
No 357
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=31.27 E-value=40 Score=24.70 Aligned_cols=32 Identities=9% Similarity=-0.148 Sum_probs=24.1
Q ss_pred ccccEEEcCCC-CCCchHHHHHHhcCCcEEecC
Q psy15363 58 QLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 58 ~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~~ 89 (130)
...|+++-+.| ....-.+.+|+..|++|++-+
T Consensus 71 ~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EK 103 (312)
T 3o9z_A 71 EGVDYLSIASPNHLHYPQIRMALRLGANALSEK 103 (312)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCCcEEEECCCchhhHHHHHHHHHCCCeEEEEC
Confidence 45888855544 445667899999999999864
No 358
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=31.27 E-value=58 Score=25.02 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=31.9
Q ss_pred HHHHhcCCcEEecCCCchhhhh-HHHHHHhcCCCCceecCHHHHHHHH
Q psy15363 76 MDVLWTGTPVVTLPGETLASRV-AASQLATLGCPELIARTHKEYQDIA 122 (130)
Q Consensus 76 lEAla~G~PvV~~~g~~~~~r~-~~~~l~~~g~~~~va~~~~~y~~~a 122 (130)
+=+-+||+||+-..++...++. ++-+|..+|++ +..++++..+..
T Consensus 123 ~v~Aa~Gv~VaKHGnR~~ss~~GsaDvLEaLGv~--~~l~~e~~~~~l 168 (377)
T 3r88_A 123 IVVAAAGVPVVKHGNRAASSLSGGADTLEALGVR--IDLGPDLVARSL 168 (377)
T ss_dssp HHHHHTTCCEEEEECCCSSSSCCHHHHHHHTTCC--CCCCHHHHHHHH
T ss_pred HHHHhcCCeEEeECCCCCCCcccHHHHHHHcCCC--cccchHHHHHHH
Confidence 3455899999999887776665 46789999887 345666555443
No 359
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=31.25 E-value=29 Score=25.47 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=23.5
Q ss_pred ccccEEEcCCC-CCCchHHHHHHhcCCcEEecC
Q psy15363 58 QLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 58 ~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~~ 89 (130)
..+|+.+...| ....-.+.+++..|++||+.+
T Consensus 64 ~~~DvViiatp~~~h~~~~~~al~aG~~Vi~ek 96 (304)
T 3bio_A 64 ESVDVALVCSPSREVERTALEILKKGICTADSF 96 (304)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHTTTCEEEECC
T ss_pred CCCCEEEECCCchhhHHHHHHHHHcCCeEEECC
Confidence 57899876655 333455778999999999863
No 360
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=31.19 E-value=72 Score=20.62 Aligned_cols=34 Identities=9% Similarity=-0.013 Sum_probs=24.2
Q ss_pred EEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 15 LWLLKFPAV----GEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 15 l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
+++.|.... ..+.++++++++|++.++++++...
T Consensus 111 ~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~~ 148 (160)
T 3sao_A 111 MRLYSRSREVSPTAMAIFRKLARERNYTDEMVAVLPSQ 148 (160)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHHTTTCCGGGEEECCCC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 456664321 2567778899999998899998654
No 361
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=31.11 E-value=76 Score=23.55 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=28.9
Q ss_pred HHHHhhCCCcEEEEeecCccc-HHHH-HHHHHHcCC-CCCCEEEecCCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVG-EANI-QATAQALGL-DQHRILFSNVAA 49 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~-~~~l-~~~~~~~g~-~~~rv~f~g~~~ 49 (130)
..|.+..|++++++++. +.+ .-.+ .+..+..|+ +++||+=++.++
T Consensus 103 ~~i~~~~p~a~vlvvtN-Pvd~~t~~a~~~~k~sg~~p~~rv~G~~~LD 150 (312)
T 3hhp_A 103 QQVAKTCPKACIGIITN-PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLD 150 (312)
T ss_dssp HHHHHHCTTSEEEECSS-CHHHHHHHHHHHHHHTTCCCTTSEEECCHHH
T ss_pred HHHHHHCCCcEEEEecC-cchhHHHHHHHHHHHcCCCCcceEEEEechh
Confidence 45667789999999974 222 1111 123456687 778998888554
No 362
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=31.01 E-value=53 Score=23.47 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=24.6
Q ss_pred HHHHHHhhccccEEEcCCC-CCCchH-----HHHHH---------hcCCcEEec
Q psy15363 50 KEEHVRRGQLADVCLDTPL-CNGHTT-----SMDVL---------WTGTPVVTL 88 (130)
Q Consensus 50 ~~~~~~~~~~~Dv~l~~~~-~~~g~~-----~lEAl---------a~G~PvV~~ 88 (130)
..++...+..||.++..+| |+++.+ .+|-+ ..|+|+...
T Consensus 89 ~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v 142 (247)
T 2q62_A 89 VQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVM 142 (247)
T ss_dssp HHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEE
T ss_pred HHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEE
Confidence 4567778889999976555 444432 45544 357886543
No 363
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.82 E-value=86 Score=18.57 Aligned_cols=109 Identities=11% Similarity=0.146 Sum_probs=61.3
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cCC-CCCCchHHHHHHh---cCC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DTP-LCNGHTTSMDVLW---TGT 83 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~~-~~~~g~~~lEAla---~G~ 83 (130)
++.+++++.+.......+++.+++.|. .+.. ..+.++....+. ..|+.+ |.. +...|..+++.+. ..+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~--~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 80 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGA---TTVL--AADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQT 80 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTC---EEEE--ESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCc---eEEE--eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCC
Confidence 456788888644456788888888875 3443 234455555553 368884 433 4455777776664 368
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec---CHHHHHHHHHHhc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR---THKEYQDIAIRLG 126 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~---~~~~y~~~a~~l~ 126 (130)
|+|...+..-...... ....|..+++.. +.+++.+...+++
T Consensus 81 ~ii~~t~~~~~~~~~~--~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 81 PVLVISATENMADIAK--ALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp CEEEEECCCCHHHHHH--HHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHH--HHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 9888766543322221 223588876653 4456665555544
No 364
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=30.70 E-value=71 Score=22.79 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=62.9
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcC-CCCCCEEEecCC--------------CHHHHHHhhccccEE-EcC-CCCCCch
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALG-LDQHRILFSNVA--------------AKEEHVRRGQLADVC-LDT-PLCNGHT 73 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g-~~~~rv~f~g~~--------------~~~~~~~~~~~~Dv~-l~~-~~~~~g~ 73 (130)
++-.+.++|.+|.++..|-+.+.-+- -...+|.+-|.- +..+...+-+ .+. +.- ...-...
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~v~Q~~~l~~~l 108 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT--RLTMVFQHFNLWSHM 108 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH--HEEEECSSCCCCTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhc--ceEEEecCcccCCCC
Confidence 56678899988889998888776331 112478887631 2122211111 222 211 1112245
Q ss_pred HHHHHHhcCC-cEEecCCCc--hhhhhHHHHHHhcCCCCc-ee-------cCHHHHHHHHHHhccCCC
Q psy15363 74 TSMDVLWTGT-PVVTLPGET--LASRVAASQLATLGCPEL-IA-------RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 74 ~~lEAla~G~-PvV~~~g~~--~~~r~~~~~l~~~g~~~~-va-------~~~~~y~~~a~~l~~d~e 130 (130)
++.|-+..+. .. .+.. ........++..+|+.++ .. .....-+.+|..|+.+|+
T Consensus 109 tv~e~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 173 (262)
T 1b0u_A 109 TVLENVMEAPIQV---LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPD 173 (262)
T ss_dssp CHHHHHHHHHHHT---TCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred cHHHHHHhhHHHh---cCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 6777666532 10 1111 111234567888899876 33 234677888999988875
No 365
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=30.69 E-value=1.8e+02 Score=22.66 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=44.8
Q ss_pred cEEEEe-ec-C-cccHHHHHHHHHHcCCCCCCEEE-------------------ecCCCHHHHHHhhccccEEEcCCCCC
Q psy15363 13 SILWLL-KF-P-AVGEANIQATAQALGLDQHRILF-------------------SNVAAKEEHVRRGQLADVCLDTPLCN 70 (130)
Q Consensus 13 a~l~i~-g~-~-~~~~~~l~~~~~~~g~~~~rv~f-------------------~g~~~~~~~~~~~~~~Dv~l~~~~~~ 70 (130)
-.+-|+ |. . ..+...+++++++.|+. -.+.+ .|..+.+|+.. +..|++.+-.+++.
T Consensus 170 ~~VNii~G~~~~~~D~~eik~lL~~~Gi~-v~~~~d~s~~ld~~~~~~~~~~~~~gg~~~~ei~~-~~~A~~ni~~~~~~ 247 (458)
T 3pdi_B 170 RQVNVLCSANLTPGDLEYIAESIESFGLR-PLLIPDLSGSLDGHLDENRFNALTTGGLSVAELAT-AGQSVATLVVGQSL 247 (458)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHTTTCE-EEEESCHHHHSSSCCCSSCCTTCCSCSBCHHHHGG-GSSCSCEEEESGGG
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHcCCE-EEEecCccccccCccccccccccCCCCCCHHHHHh-hhhCcEEEEecHHH
Confidence 356677 64 1 22457899999999985 22221 33445677755 44555555444442
Q ss_pred CchHHHHHH--hcCCcEEecC
Q psy15363 71 GHTTSMDVL--WTGTPVVTLP 89 (130)
Q Consensus 71 ~g~~~lEAl--a~G~PvV~~~ 89 (130)
..+.+.| -+|+|.+..+
T Consensus 248 --~~~A~~Le~~~GiP~~~~~ 266 (458)
T 3pdi_B 248 --AGAADALAERTGVPDRRFG 266 (458)
T ss_dssp --HHHHHHHHHHSCCCEEEEC
T ss_pred --HHHHHHHHHHHCCCEEecC
Confidence 4566666 4799999864
No 366
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=30.58 E-value=89 Score=22.74 Aligned_cols=77 Identities=9% Similarity=-0.005 Sum_probs=41.5
Q ss_pred CCCcEEEEeecCc-ccHHHHHHHHHHcCC------CCCC--EEEecCCCHHHHHHhhc--cccEEEcCCC-CCCchHHHH
Q psy15363 10 VPNSILWLLKFPA-VGEANIQATAQALGL------DQHR--ILFSNVAAKEEHVRRGQ--LADVCLDTPL-CNGHTTSMD 77 (130)
Q Consensus 10 ~P~a~l~i~g~~~-~~~~~l~~~~~~~g~------~~~r--v~f~g~~~~~~~~~~~~--~~Dv~l~~~~-~~~g~~~lE 77 (130)
.++.++.++|-.| ..+..++.+ .+.|. ++++ =...|.--+..+..+.. .+|+.+...| ....-.+.|
T Consensus 5 ~~~~rVaViG~sG~~G~~~~~~l-~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~~e 83 (288)
T 2nu8_A 5 DKNTKVICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILE 83 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHHHH
Confidence 3567889999523 334444444 44453 2111 01111000112233334 6899976544 455677999
Q ss_pred HHhcCCcEEe
Q psy15363 78 VLWTGTPVVT 87 (130)
Q Consensus 78 Ala~G~PvV~ 87 (130)
|+..|++++.
T Consensus 84 a~~~Gi~~iV 93 (288)
T 2nu8_A 84 AIDAGIKLII 93 (288)
T ss_dssp HHHTTCSEEE
T ss_pred HHHCCCCEEE
Confidence 9999999743
No 367
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.44 E-value=1.4e+02 Score=20.83 Aligned_cols=64 Identities=11% Similarity=-0.004 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCCCCEEEecCC-CHHHHHHhh--ccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 26 ANIQATAQALGLDQHRILFSNVA-AKEEHVRRG--QLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~-~~~~~~~~~--~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
..+++.++++|.. =-+...... ...++...+ +.+|-++-.........+-++...|+|||+...
T Consensus 30 ~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 30 SWIGIELGKRGLD-LLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPEDFRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHTTCE-EEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSCHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHCCCE-EEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHhCCCCEEEECC
Confidence 4566778888863 112222221 123344444 357877543322222334456678999998854
No 368
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=30.23 E-value=1.8e+02 Score=22.07 Aligned_cols=82 Identities=18% Similarity=0.112 Sum_probs=47.7
Q ss_pred HHHHhhCCCc--EEEEeecCcccHHHHHHHHHHcCCC-CCCEEEe--cCCCHHHHHHhhcc--ccEEEcCCCC-CCchHH
Q psy15363 4 IFVLKAVPNS--ILWLLKFPAVGEANIQATAQALGLD-QHRILFS--NVAAKEEHVRRGQL--ADVCLDTPLC-NGHTTS 75 (130)
Q Consensus 4 ~~il~~~P~a--~l~i~g~~~~~~~~l~~~~~~~g~~-~~rv~f~--g~~~~~~~~~~~~~--~Dv~l~~~~~-~~g~~~ 75 (130)
++.+.+.++. .+.+.+.+ .+.+++++++++-. ..++.+. .-.+.+++..+++. +|++++..+. .....+
T Consensus 17 a~~L~~~g~~~~~V~v~~r~---~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVin~ag~~~~~~v~ 93 (405)
T 4ina_A 17 AHKMAMNREVFSHITLASRT---LSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVLNIALPYQDLTIM 93 (405)
T ss_dssp HHHHHTCTTTCCEEEEEESC---HHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEEECSCGGGHHHHH
T ss_pred HHHHHhCCCCceEEEEEECC---HHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEEECCCcccChHHH
Confidence 4556667764 66666642 34445544443210 0233332 22345677777777 8999876543 333456
Q ss_pred HHHHhcCCcEEec
Q psy15363 76 MDVLWTGTPVVTL 88 (130)
Q Consensus 76 lEAla~G~PvV~~ 88 (130)
-.++..|+.+|-+
T Consensus 94 ~a~l~~g~~vvD~ 106 (405)
T 4ina_A 94 EACLRTGVPYLDT 106 (405)
T ss_dssp HHHHHHTCCEEES
T ss_pred HHHHHhCCCEEEe
Confidence 6778999999954
No 369
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=30.17 E-value=98 Score=19.02 Aligned_cols=105 Identities=8% Similarity=-0.006 Sum_probs=56.8
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc---ccEEE-cCC-CCCCchHHHHHHh---cCCc
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL---ADVCL-DTP-LCNGHTTSMDVLW---TGTP 84 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~---~Dv~l-~~~-~~~~g~~~lEAla---~G~P 84 (130)
.+++++.+.......+++.++. |. .|... .+..+....+.. .|+++ |.. +...|..+++.+. ..+|
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~---~v~~~--~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 78 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DF---EVTTC--ESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSV 78 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TS---EEEEE--SSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCE
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-Cc---eEEEe--CCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcE
Confidence 5677887643345566666643 32 34433 334555454432 48884 543 5556777766554 4788
Q ss_pred EEecCCCchhhhhHHHHHHhcC-CCCceec--CHHHHHHHHHHh
Q psy15363 85 VVTLPGETLASRVAASQLATLG-CPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g-~~~~va~--~~~~y~~~a~~l 125 (130)
+|...+..-..... ..++ .| ..+++.. +.+++.+...++
T Consensus 79 ii~~s~~~~~~~~~-~~~~-~g~~~~~l~KP~~~~~L~~~i~~~ 120 (151)
T 3kcn_A 79 YLMLTGNQDLTTAM-EAVN-EGQVFRFLNKPCQMSDIKAAINAG 120 (151)
T ss_dssp EEEEECGGGHHHHH-HHHH-HTCCSEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHH-HHHH-cCCeeEEEcCCCCHHHHHHHHHHH
Confidence 88776543322222 1222 35 7776653 666666655544
No 370
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=29.97 E-value=1.4e+02 Score=21.73 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=34.5
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC--------------HHHHHHhhccccEEEcCCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--------------KEEHVRRGQLADVCLDTPLC 69 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~--------------~~~~~~~~~~~Dv~l~~~~~ 69 (130)
+.+.+++|.++..+. +...+.+.|. .+|.+..+.+ .++....+..+|+.+++.|.
T Consensus 117 ~k~vlvlGaGg~g~a-ia~~L~~~G~--~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~ 185 (277)
T 3don_A 117 DAYILILGAGGASKG-IANELYKIVR--PTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPA 185 (277)
T ss_dssp GCCEEEECCSHHHHH-HHHHHHTTCC--SCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-
T ss_pred CCEEEEECCcHHHHH-HHHHHHHCCC--CEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccC
Confidence 457788896444443 4444566786 4666665542 34555667889999977654
No 371
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=29.93 E-value=66 Score=20.46 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=17.7
Q ss_pred HHHHHHcCCCCCCEEEecCCCHHHH
Q psy15363 29 QATAQALGLDQHRILFSNVAAKEEH 53 (130)
Q Consensus 29 ~~~~~~~g~~~~rv~f~g~~~~~~~ 53 (130)
...+++.|++++||.++-..+..+.
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~ 71 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAA 71 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHH
Confidence 3445677888889888887765443
No 372
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=29.57 E-value=1.3e+02 Score=20.08 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----c-EEEcCCCCC-CchHHHHHHh-cCCcEEec
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVLW-TGTPVVTL 88 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----D-v~l~~~~~~-~g~~~lEAla-~G~PvV~~ 88 (130)
.+.+++.++++|+ .+.|.-.=...++..+++.+ | +.++|--|+ .+..+.+|++ .++|+|=.
T Consensus 31 ~~~l~~~a~~~g~---~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEV 98 (143)
T 1gqo_A 31 ETDLFQFAEALHI---QLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEV 98 (143)
T ss_dssp HHHHHHHHHHHTC---EEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEE
T ss_pred HHHHHHHHHHcCC---EEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCCCEEEE
Confidence 3467777888886 47777666666776666554 4 457887776 4788999986 47999844
No 373
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=29.38 E-value=98 Score=18.75 Aligned_cols=105 Identities=8% Similarity=0.027 Sum_probs=58.1
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHh---cCCcEE
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLW---TGTPVV 86 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla---~G~PvV 86 (130)
+++++.+.......+++.+++.|. +|... .+..+....+. ..|+++ |. .|...|..+++.+. ..+|+|
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii 80 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPY---DIFHV--ETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVI 80 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSS---EEEEE--SSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCc---eEEEe--CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 677787643445667777665553 34332 23344444433 478884 53 35556777777664 468888
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
...+..-..... . ....|..+++.. +.+++.+...++
T Consensus 81 ~ls~~~~~~~~~-~-~~~~ga~~~l~KP~~~~~L~~~i~~~ 119 (137)
T 3cfy_A 81 IATAHGSVDLAV-N-LIQKGAEDFLEKPINADRLKTSVALH 119 (137)
T ss_dssp EEESSCCHHHHH-H-HHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred EEEecCcHHHHH-H-HHHCCccEEEeCCCCHHHHHHHHHHH
Confidence 775543222221 1 224588887653 566666655443
No 374
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=29.33 E-value=1.3e+02 Score=22.20 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=41.8
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH--HHHH----------------HhhccccEEEcCCCCCCc
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK--EEHV----------------RRGQLADVCLDTPLCNGH 72 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~--~~~~----------------~~~~~~Dv~l~~~~~~~g 72 (130)
...++.++|.+...+..++.+.+..++ ++|.+..+-+. +++. ... .+|+.+..-|....
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~--~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~p 200 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDI--GEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRKP 200 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCC--CEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSSC
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCc--cEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCCc
Confidence 346788888644445555655554454 56666665431 2222 233 68988765443322
Q ss_pred hHHHHHHhcCCcEEecC
Q psy15363 73 TTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 73 ~~~lEAla~G~PvV~~~ 89 (130)
....+.+..|+-|+...
T Consensus 201 v~~~~~l~~G~~V~~ig 217 (322)
T 1omo_A 201 VVKAEWVEEGTHINAIG 217 (322)
T ss_dssp CBCGGGCCTTCEEEECS
T ss_pred eecHHHcCCCeEEEECC
Confidence 22235666788777663
No 375
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus}
Probab=29.24 E-value=68 Score=21.31 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=25.0
Q ss_pred EEEeecCcc-c---HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 15 LWLLKFPAV-G---EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 15 l~i~g~~~~-~---~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
++|++.... . .+.++++++++|++.++++++...
T Consensus 130 ~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~ii~~~q~ 167 (184)
T 2l5p_A 130 VSLLGRDWKITHKTIDRFIALTKTQNLTKNNLLFPDLT 167 (184)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEECCCCS
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCCChHHEEEcCCC
Confidence 567775321 2 467778899999998899988765
No 376
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=29.17 E-value=1.3e+02 Score=20.14 Aligned_cols=61 Identities=23% Similarity=0.246 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc-----c-EEEcCCCCC-CchHHHHHHh-cCCcEEec
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA-----D-VCLDTPLCN-GHTTSMDVLW-TGTPVVTL 88 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~-----D-v~l~~~~~~-~g~~~lEAla-~G~PvV~~ 88 (130)
.+.+++.++++|+ .+.|.-.=...++..+++.+ | |.++|--|+ .+..+.+|++ .++|+|=.
T Consensus 30 ~~~l~~~a~~~g~---~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEV 98 (149)
T 2uyg_A 30 EALCEAWGAELGL---GVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEV 98 (149)
T ss_dssp HHHHHHHHHHTTC---CEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEE
T ss_pred HHHHHHHHHHcCC---EEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEE
Confidence 3567777888887 47777666666777776654 3 557887775 4788999986 57999944
No 377
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=28.97 E-value=32 Score=21.72 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCC------HHHHHHhhccccEEEcCCCCCC-chHHHHHHhcCCcEEecCCCchhhhh
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAA------KEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPGETLASRV 97 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~------~~~~~~~~~~~Dv~l~~~~~~~-g~~~lEAla~G~PvV~~~g~~~~~r~ 97 (130)
.+.|++.++++|++ =+|.--|... .+++ ..+|+++-...-.- +. .-..|+||+-.+-
T Consensus 22 AeaLekaA~~~G~~-ikVEtqgs~g~~n~Lt~~~I----~~AD~VIia~d~~v~~~----~RF~gk~v~~~~v------- 85 (106)
T 2m1z_A 22 AQALKKGAKKMGNL-IKVETQGATGIENELTEKDV----NIGEVVIFAVDTKVRNK----ERFDGKVVLEVPV------- 85 (106)
T ss_dssp HHHHHHHHHHHTCE-EEEEEEETTEESSCCCHHHH----HHCSEEEEEESSCCSTH----HHHTTSEEEEECT-------
T ss_pred HHHHHHHHHHCCCE-EEEEEecCccccCCCCHHHH----hhCCEEEEeccccccch----hccCCCcEEEEcH-------
Confidence 56899999999986 5777777543 3443 58999974433221 12 2334999996542
Q ss_pred HHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 98 AASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 98 ~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
.+ .-.+++.+++++.++++
T Consensus 86 ----------~~-~i~~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 86 ----------SA-PIKDAEKVINAALALID 104 (106)
T ss_dssp ----------TH-HHHCHHHHHHHHHHHHT
T ss_pred ----------HH-HHHCHHHHHHHHHHHHh
Confidence 22 23677888888877654
No 378
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=28.97 E-value=70 Score=20.69 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=24.3
Q ss_pred EEEEeecCcc-c---HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 14 ILWLLKFPAV-G---EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 14 ~l~i~g~~~~-~---~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.+++.+.... . .+.++++++++|++.++++++...
T Consensus 125 ~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~q~ 163 (166)
T 2ra6_A 125 VANLFGRTPNLSNEIKKRFEEDFMNRGFRRENILDISEV 163 (166)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHTTTCCGGGEEEGGGS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 4566675322 2 457778889999998899887653
No 379
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=28.92 E-value=36 Score=25.12 Aligned_cols=36 Identities=8% Similarity=-0.146 Sum_probs=25.6
Q ss_pred HhhccccEEEcCCC-CCCchHHHHHHhcCCcEEecCC
Q psy15363 55 RRGQLADVCLDTPL-CNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 55 ~~~~~~Dv~l~~~~-~~~g~~~lEAla~G~PvV~~~g 90 (130)
.++..+|+.+...| ...--.+..++..|++||+...
T Consensus 54 ~ll~~~DvViiatp~~~h~~~~~~al~aG~~Vv~ekp 90 (320)
T 1f06_A 54 KHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYD 90 (320)
T ss_dssp GTTTTCSEEEECSCTTTHHHHHHHHHTTTSEEECCCC
T ss_pred HHhcCCCEEEEcCCcHHHHHHHHHHHHCCCEEEECCC
Confidence 34467999977654 3334457789999999998653
No 380
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=28.91 E-value=2.1e+02 Score=22.40 Aligned_cols=41 Identities=17% Similarity=-0.052 Sum_probs=28.6
Q ss_pred HHHHHHhhccccEEEcCCCCCC-chHHHHHHhcCCcEEecCC
Q psy15363 50 KEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 50 ~~~~~~~~~~~Dv~l~~~~~~~-g~~~lEAla~G~PvV~~~g 90 (130)
.+++...++.+|+++++.+... ......++..|+.++....
T Consensus 79 ~~~l~~~l~~~DvVIn~tp~~~~~~v~~a~l~~g~~vvd~~~ 120 (467)
T 2axq_A 79 DSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSY 120 (467)
T ss_dssp HHHHHHHHHTSSEEEECSCGGGHHHHHHHHHHHTCEEEECSC
T ss_pred HHHHHHHHcCCCEEEECCchhhhHHHHHHHHhcCCEEEEeec
Confidence 4456666778999998877543 3345567888999887643
No 381
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=28.88 E-value=1.7e+02 Score=22.29 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=37.0
Q ss_pred HHHHHhh--ccccEEEcCCCCCC-chHHHHHH-hcCCcEEecCCCch---hhhh-HHHHHHhcCCCC---ceecCHHHHH
Q psy15363 51 EEHVRRG--QLADVCLDTPLCNG-HTTSMDVL-WTGTPVVTLPGETL---ASRV-AASQLATLGCPE---LIARTHKEYQ 119 (130)
Q Consensus 51 ~~~~~~~--~~~Dv~l~~~~~~~-g~~~lEAl-a~G~PvV~~~g~~~---~~r~-~~~~l~~~g~~~---~va~~~~~y~ 119 (130)
+.+..+. ..+|+.+..+ +.. -..+.+.+ ..|+|++..+.+.. .++. ...+++..|++- ...++.++..
T Consensus 73 ~~l~~~~~~~~~d~vi~~~-E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~ 151 (451)
T 2yrx_A 73 EALVQFAKQQAIDLTIVGP-EAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEEAK 151 (451)
T ss_dssp HHHHHHHHHTTCSEEEECS-HHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHH
T ss_pred HHHHHHHHHcCCCEEEECC-chHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHH
Confidence 4444444 3467776422 111 11233433 57999884332211 1222 346788888863 3456777665
Q ss_pred HHHHH
Q psy15363 120 DIAIR 124 (130)
Q Consensus 120 ~~a~~ 124 (130)
+.+.+
T Consensus 152 ~~~~~ 156 (451)
T 2yrx_A 152 AYIEQ 156 (451)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54433
No 382
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=28.88 E-value=98 Score=18.61 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=23.2
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCC-CEEEe
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQH-RILFS 45 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~-rv~f~ 45 (130)
++.++-+-.. ..-.+-++.++.+.|++++ +|.|+
T Consensus 20 ~dl~f~I~~~-t~v~kLi~ayc~~~~I~~~~~Irll 54 (82)
T 3goe_A 20 EDLRLSIPVD-FTVKDLIKRYCTEVKISFHERIRLE 54 (82)
T ss_dssp CCEEEEEETT-SBHHHHHHHHHHHHTCCCCTTCEEE
T ss_pred CCeEEEecCC-CCHHHHHHHHHHHcCCCcCceEEEE
Confidence 4555555543 3456778888999999988 56654
No 383
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=28.79 E-value=31 Score=24.39 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=25.3
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
+..+++.| +....+.+++.++++|++.+|+...|..
T Consensus 228 ~~~v~vCG-p~~m~~~v~~~l~~~gv~~~~i~~~~~~ 263 (271)
T 4fk8_A 228 QDRVMLCG-STAMLKDTTELLKKAGLVEGKNSAPGHY 263 (271)
T ss_dssp TEEEEEEE-CHHHHHHHHHHHHHTTCCBCBTTBCBSE
T ss_pred CCEEEEEC-CHHHHHHHHHHHHHcCCchhhcCCCCcE
Confidence 45666666 4456677888889999987776665543
No 384
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=28.38 E-value=1e+02 Score=18.60 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=41.4
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC-CCCCchHHHHHHhcCCcEEec
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G~PvV~~ 88 (130)
+..+++-|.....+..++++++++|- + +...++ ..++.++..- ....+.....|...|+|||..
T Consensus 18 g~~i~isg~~~~~r~~l~~li~~~Gg---~--v~~~~s--------~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~ 82 (107)
T 3l3e_A 18 KVVVCVSKKLSKKQSELNGIAASLGA---D--YRRSFD--------ETVTHFIYQGRPNDTNREYKSVKERGVHIVSE 82 (107)
T ss_dssp TCEEEECGGGGGGHHHHHHHHHHTTC---E--EESSCC--------TTCCEEECCCCTTCCCHHHHHHHHTTCEEECH
T ss_pred CeEEEEeCCChHhHHHHHHHHHHcCC---E--Eecccc--------CCceEEEecCCCCCCCHHHHHHHHCCCeEecH
Confidence 56777777533468899999999984 3 334443 2345454322 223467788899999999973
No 385
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=27.98 E-value=96 Score=19.72 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=24.7
Q ss_pred cEEEEeecCcc-c---HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 13 SILWLLKFPAV-G---EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 13 a~l~i~g~~~~-~---~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
-.++|++.... . .+.++++++++|++.++++++...
T Consensus 112 ~~~~llsR~~~~~~~~~~~f~~~~~~~G~~~~~i~~~~~~ 151 (159)
T 1ew3_A 112 QLFEFYAREPDVSPEIKEEFVKIVQKRGIVKENIIDLTKI 151 (159)
T ss_dssp EEEEEEESSSSCCHHHHHHHHHHHHHTTCCGGGEEEGGGS
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEECCcC
Confidence 34556775322 2 457778899999998899887643
No 386
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=27.90 E-value=87 Score=17.70 Aligned_cols=37 Identities=5% Similarity=-0.025 Sum_probs=21.6
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.++..+++.+..+.........++++|.. +|..+|-.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~--~v~~lGG~ 75 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYT--HVENAGGL 75 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCS--SEEEEEET
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCC--CEEeccCH
Confidence 35667777775443334455667777874 55555543
No 387
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=27.76 E-value=30 Score=24.53 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=15.0
Q ss_pred cEEEEeecCcccHH-HHHHHHHHcCCCCCCEEE
Q psy15363 13 SILWLLKFPAVGEA-NIQATAQALGLDQHRILF 44 (130)
Q Consensus 13 a~l~i~g~~~~~~~-~l~~~~~~~g~~~~rv~f 44 (130)
..+++.| +....+ .+++.+.++|++.++|++
T Consensus 243 ~~vyvCG-p~~m~~~~v~~~L~~~G~~~~~I~~ 274 (275)
T 1umk_A 243 PLVLMCG-PPPMIQYACLPNLDHVGHPTERCFV 274 (275)
T ss_dssp CEEEEES-CHHHHHHTTHHHHHHHTCCGGGEEE
T ss_pred eEEEEEC-CHHHHHHHHHHHHHHcCCCHHHEEe
Confidence 4444444 223333 455555566666555543
No 388
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=27.57 E-value=2e+02 Score=21.78 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=39.2
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCH----------------HHHHHhhccccEEEcCCCCCCch
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAK----------------EEHVRRGQLADVCLDTPLCNGHT 73 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~----------------~~~~~~~~~~Dv~l~~~~~~~g~ 73 (130)
.++.++.|+|.| .--..+.+.++..|. .+|+...+.+. +++...+..+|+.+++.+.+...
T Consensus 165 l~g~~VlIiGaG-~iG~~~a~~l~~~G~--~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~~~ 241 (404)
T 1gpj_A 165 LHDKTVLVVGAG-EMGKTVAKSLVDRGV--RAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPV 241 (404)
T ss_dssp CTTCEEEEESCC-HHHHHHHHHHHHHCC--SEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCC
T ss_pred ccCCEEEEEChH-HHHHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCCce
Confidence 578889999964 433344555666785 47777665431 12233445789998876543322
Q ss_pred ---HHHHH
Q psy15363 74 ---TSMDV 78 (130)
Q Consensus 74 ---~~lEA 78 (130)
..++.
T Consensus 242 ~~~~~l~~ 249 (404)
T 1gpj_A 242 IHVDDVRE 249 (404)
T ss_dssp BCHHHHHH
T ss_pred ecHHHHHH
Confidence 45555
No 389
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=27.45 E-value=1.1e+02 Score=18.81 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEEcCCC-CC-----CchHHHH-HHhcCCcEEecCC
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCLDTPL-CN-----GHTTSMD-VLWTGTPVVTLPG 90 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l~~~~-~~-----~g~~~lE-Ala~G~PvV~~~g 90 (130)
+.++++++++|+..-.......-+.+.+..+-+ .+|+.+-..+ .+ .|.++-. ...+.+||+..+.
T Consensus 74 ~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 74 QKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp HHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEEEC
T ss_pred HHHHHHHHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEEeC
Confidence 356667777888622444444455677777666 7999864321 11 1222222 2346788877654
No 390
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=27.43 E-value=95 Score=17.97 Aligned_cols=106 Identities=10% Similarity=0.079 Sum_probs=59.4
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh---cCCcEE
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW---TGTPVV 86 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla---~G~PvV 86 (130)
+++++.+.......+++.+++.|. +|.... +..+....+. ..|+. +|. .|...|..+++.+. ..+|+|
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~---~v~~~~--~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 76 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGH---QVDDAE--DAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPIL 76 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEE
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCC---EEEEeC--CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 456776543346677888887764 344332 3344444333 36887 454 35456777777765 468888
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
...+..-..... . ....|..+++.. +.+++.....++.
T Consensus 77 ~~s~~~~~~~~~-~-~~~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 77 VLTARESWQDKV-E-VLSAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp EEESCCCHHHHH-H-HHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHH-H-HHHcCccceEECCCCHHHHHHHHHHHH
Confidence 775543222111 1 224588777653 6677766655543
No 391
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=27.37 E-value=1.3e+02 Score=21.92 Aligned_cols=51 Identities=16% Similarity=0.034 Sum_probs=33.3
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecC-CCHHHHHHhhccccEEEcC
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNV-AAKEEHVRRGQLADVCLDT 66 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~-~~~~~~~~~~~~~Dv~l~~ 66 (130)
+++|.|..|.--..+.+.+.+.|- -+|+.... .+.+++..+++.+|+++..
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~--~~v~~~d~~~d~~~l~~~~~~~d~Vih~ 53 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTD--HHIFEVHRQTKEEELESALLKADFIVHL 53 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCC--CEEEECCTTCCHHHHHHHHHHCSEEEEC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC--CEEEEECCCCCHHHHHHHhccCCEEEEC
Confidence 456777544433444444444453 26777777 7788888888889999753
No 392
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=27.05 E-value=98 Score=18.02 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=59.4
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHh--cCCcEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLW--TGTPVV 86 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla--~G~PvV 86 (130)
.+++++.+....+..++..+++.|. +|.... +..+....+. ..|+++ |. .|...|..+++.+. ..+|+|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~---~v~~~~--~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii 78 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGY---DVFEAT--DGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALM 78 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTC---EEEEES--SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCc---EEEEeC--CHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEE
Confidence 4677777543346677777776664 344322 3344444333 468884 43 34445776666664 578888
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
...+..-..... ..+ ..|..+++.. +.+++.....++.
T Consensus 79 ~~s~~~~~~~~~-~~~-~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 79 FLTGRDNEVDKI-LGL-EIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp EEESCCSHHHHH-HHH-HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEECCCChHHHH-HHH-hcCcceEEeCCCCHHHHHHHHHHHH
Confidence 775543222211 122 3477777653 6677766655443
No 393
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=26.87 E-value=1.5e+02 Score=20.14 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=36.6
Q ss_pred hCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 9 AVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 9 ~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
+.|.-.|++-|-+...++.+.+.++++|- ..+...++. .+.-++...+ ......+.|++.|++||+.
T Consensus 8 ~~~~~~~~~sgl~~~~~~~l~~~i~~lgG----~~~~~~~~~--------~~THlv~~~~-~rT~K~l~ai~~g~~Iv~~ 74 (199)
T 3u3z_A 8 KKPTRTLVMTSMPSEKQNVVIQVVDKLKG----FSIAPDVCE--------TTTHVLSGKP-LRTLNVLLGIARGCWVLSY 74 (199)
T ss_dssp --CCCEEEEESCCHHHHHHHHHHHHHHCS----CEEESSCCT--------TEEEEEESSC-CCBHHHHHHHHTTCEEEET
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHHcCC----cEEecCCCC--------CCeEEEECCC-CCCHHHHHHHHCCCcEEeH
Confidence 34544444444332345668888888852 112222221 2333332222 3457899999999999975
No 394
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=26.55 E-value=1.2e+02 Score=22.22 Aligned_cols=47 Identities=6% Similarity=0.042 Sum_probs=29.6
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHH-HHHcCCCCCCEEEec-CCCHHHH
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQAT-AQALGLDQHRILFSN-VAAKEEH 53 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~-~~~~g~~~~rv~f~g-~~~~~~~ 53 (130)
..|.+..|++.+++++. |.. .+... .+..|++++||+=+| .++...+
T Consensus 103 ~~i~~~~p~a~iivvsN--Pvd-~~t~~~~k~~g~p~~rviG~gt~LD~~R~ 151 (294)
T 1oju_A 103 KKIVENAPESKILVVTN--PMD-VMTYIMWKESGKPRNEVFGMGNQLDSQRL 151 (294)
T ss_dssp HHHHTTSTTCEEEECSS--SHH-HHHHHHHHHSCCCTTSEEECSHHHHHHHH
T ss_pred HHHHhhCCCeEEEEeCC--cch-HHHHHHHHhcCCCHHHEeecccccHHHHH
Confidence 35667789999999984 322 23333 344588888998886 4543333
No 395
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=26.45 E-value=1.4e+02 Score=19.61 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=59.9
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEec-CCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh---cCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW---TGT 83 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g-~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla---~G~ 83 (130)
..+++++.+....+..++..+++.+ .+.... ..+.++....+. ..|++ +|- .|...|..+++.+. ..+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~----~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~ 80 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAP----DITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSG 80 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCT----TEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCS
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCC----CcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 3577788764334556666666543 122222 223344444443 36888 554 35556777777764 367
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
|||.+.+......... .-..|..+++.. +.+++.+...++.
T Consensus 81 ~ii~ls~~~~~~~~~~--~~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 123 (215)
T 1a04_A 81 RIVVFSVSNHEEDVVT--ALKRGADGYLLKDMEPEDLLKALHQAA 123 (215)
T ss_dssp EEEEEECCCCHHHHHH--HHHTTCSEEEETTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHH--HHHcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 8887765433222221 223588887663 6677776665544
No 396
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.25 E-value=1.4e+02 Score=19.59 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEec-CCCHHHHHHhhc--cccEEEcCCCCCCc----hHHHHHHh-cC---CcEEecCCCch
Q psy15363 25 EANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQ--LADVCLDTPLCNGH----TTSMDVLW-TG---TPVVTLPGETL 93 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g-~~~~~~~~~~~~--~~Dv~l~~~~~~~g----~~~lEAla-~G---~PvV~~~g~~~ 93 (130)
...+...++..|. +|+.+| .+|.+++..... .+|++.-++..+.. ..+++++- .| +||+.- |...
T Consensus 35 ~~~va~~l~~~G~---eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vG-G~~~ 110 (161)
T 2yxb_A 35 AKVVARALRDAGF---EVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLG-GTIP 110 (161)
T ss_dssp HHHHHHHHHHTTC---EEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEE-ECCC
T ss_pred HHHHHHHHHHCCC---EEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEe-CCCc
Confidence 4456677888886 588887 578888877665 47888655443322 22444442 23 666653 3322
Q ss_pred hhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 94 ASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 94 ~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
.... ..++..|.+.+... +.++-++.+.++.
T Consensus 111 ~~~~--~~l~~~G~d~v~~~~~~~~~~~~~~~~~~ 143 (161)
T 2yxb_A 111 IPDL--EPLRSLGIREIFLPGTSLGEIIEKVRKLA 143 (161)
T ss_dssp HHHH--HHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred hhcH--HHHHHCCCcEEECCCCCHHHHHHHHHHHH
Confidence 2222 24778899875543 3456667766654
No 397
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=25.96 E-value=98 Score=19.99 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=23.8
Q ss_pred EEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 15 LWLLKFPAV----GEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 15 l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
+++++.... ..+.++++++++|++.++++++...
T Consensus 117 ~~ll~R~~~~~~~~~~~f~~~~~~~G~~~~~i~~~~~~ 154 (162)
T 3kff_A 117 MELYGRKADLNSDIKEKFVKLCEEHGIIKENIIDLTKT 154 (162)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEEGGGS
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 356664321 2457788899999998899988654
No 398
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=25.93 E-value=1.4e+02 Score=19.28 Aligned_cols=104 Identities=9% Similarity=0.067 Sum_probs=60.6
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEEE-cC-CCCCCchHHHHHHh---cCCc
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVCL-DT-PLCNGHTTSMDVLW---TGTP 84 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~l-~~-~~~~~g~~~lEAla---~G~P 84 (130)
..+++++.+....+..++..+++.|. .|... .+.++....+.. .|+++ |- .|...|..+++.+. ..+|
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ 81 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGY---AVRQA--HNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDAR 81 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC---EEEEE--CSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCC---EEEEe--CCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCC
Confidence 35777887644456788888888775 34332 334555555543 68884 43 25556777777654 4789
Q ss_pred EEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHH
Q psy15363 85 VVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIA 122 (130)
Q Consensus 85 vV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a 122 (130)
||.+.+..-...... .-..|..+++.. +.+++.+..
T Consensus 82 ii~lt~~~~~~~~~~--a~~~Ga~~~l~KP~~~~~L~~~i 119 (184)
T 3rqi_A 82 ILVLTGYASIATAVQ--AVKDGADNYLAKPANVESILAAL 119 (184)
T ss_dssp EEEEESSCCHHHHHH--HHHHTCSEEEESSCCHHHHHHHT
T ss_pred EEEEeCCCCHHHHHH--HHHhCHHHheeCCCCHHHHHHHH
Confidence 988766433222221 123477776653 555555543
No 399
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=25.92 E-value=1.6e+02 Score=22.69 Aligned_cols=66 Identities=8% Similarity=-0.060 Sum_probs=38.3
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCC-chHHHHHHhcC
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNG-HTTSMDVLWTG 82 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~-g~~~lEAla~G 82 (130)
.++|..+.....+.|++++++.++. -+.+.+..+.-|+ .+++.||+|+-+.-.++ ....-|=...|
T Consensus 282 sVFIATDa~~~~~ELk~~L~~~~v~--vv~~~pe~a~ID~-~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 282 SVFVASDKDHMIDEINEALKPYEIE--AHRQEPDDMYTSL-AIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp EEEEEESSCCCHHHHHHHHGGGTCC--EECCSSCCHHHHH-HHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred EEEEecCCHHHHHHHHHHhhccCce--EEEeCCchhHHHH-HHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 3334444334567788887766652 3444444444443 56788999996654443 34556666666
No 400
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=25.89 E-value=1.6e+02 Score=20.18 Aligned_cols=109 Identities=10% Similarity=0.069 Sum_probs=63.8
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcCC-CCCCchHHHHHHhc--CCcE
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDTP-LCNGHTTSMDVLWT--GTPV 85 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~~-~~~~g~~~lEAla~--G~Pv 85 (130)
..+++++.+....++.++..+++.|. .|... .+..+....+. ..|++ +|.. |...|..+++.+.. .+||
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~--~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~i 111 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGY---VVDHA--DSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPI 111 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC---EEEEE--SSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCC---EEEEe--CCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCE
Confidence 35777887643446677777776653 33332 23344444433 37888 4543 54457777776653 5889
Q ss_pred EecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 86 VTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 86 V~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
|.+.+..-...... .-..|..+++.. +.+++.+....+++
T Consensus 112 I~lt~~~~~~~~~~--a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 112 IVLTARDTVEEKVR--LLGLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp EEEESCCSHHHHHH--HHHHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEECCCCHHHHHH--HHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 88766433222221 123488887763 67888877766654
No 401
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=25.79 E-value=51 Score=27.14 Aligned_cols=69 Identities=9% Similarity=-0.037 Sum_probs=42.3
Q ss_pred HHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCCCc--hhhhhHHHHHHh--cCCCCceecCHHHHHHHHHHh
Q psy15363 52 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGET--LASRVAASQLAT--LGCPELIARTHKEYQDIAIRL 125 (130)
Q Consensus 52 ~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g~~--~~~r~~~~~l~~--~g~~~~va~~~~~y~~~a~~l 125 (130)
++..++..+|+++.= .+.+.+|.+..++|||...-+. ..... -+++-. --+|+-++.|.+++++.....
T Consensus 608 di~~ll~~aD~lITD----ySSv~fD~~~l~kPiif~~~D~~~Y~~~~-rg~y~d~~~~~pg~~~~~~~eL~~~i~~~ 680 (729)
T 3l7i_A 608 DVSELFLISDCLITD----YSSVMFDYGILKRPQFFFAYDIDKYDKGL-RGFYMNYMEDLPGPIYTEPYGLAKELKNL 680 (729)
T ss_dssp CHHHHHHTCSEEEES----SCTHHHHHGGGCCCEEEECTTTTTTTSSC-CSBSSCTTSSSSSCEESSHHHHHHHHTTH
T ss_pred CHHHHHHHhCEEEee----chHHHHhHHhhCCCEEEecCCHHHHhhcc-CCcccChhHhCCCCeECCHHHHHHHHhhh
Confidence 455677889999832 3368999999999999884321 11100 001100 134667788888887765543
No 402
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=25.67 E-value=1.3e+02 Score=18.92 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=59.2
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh--ccccEE-EcC-CCCCCchHHHHHHhc--CCcE
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG--QLADVC-LDT-PLCNGHTTSMDVLWT--GTPV 85 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~--~~~Dv~-l~~-~~~~~g~~~lEAla~--G~Pv 85 (130)
..+++++.+.......+++.+++.|-. ..+... .+.++....+ ...|++ +|. .+...|..+++.+.. .+|+
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~--~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~i 101 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDM-KVVGFA--KDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKKAPTRV 101 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEE--SSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHSCCEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCe-EEEEec--CCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceE
Confidence 357778876434466778888776421 122222 2334444443 247888 454 355567777776543 4777
Q ss_pred EecCCCchhh-hhHHHHHHhcCCCCceecC-----------HHHHHHHHHHhcc
Q psy15363 86 VTLPGETLAS-RVAASQLATLGCPELIART-----------HKEYQDIAIRLGT 127 (130)
Q Consensus 86 V~~~g~~~~~-r~~~~~l~~~g~~~~va~~-----------~~~y~~~a~~l~~ 127 (130)
|...+..-.. ..... ....|..+++... .++..+...+.++
T Consensus 102 i~~s~~~~~~~~~~~~-~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 102 IMVSSLTEEGAAITIE-ALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp EEEESSCCTTCHHHHH-HHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred EEEecCCccchHHHHH-HHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 7665422211 11111 2245887776543 3566666655544
No 403
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Probab=25.56 E-value=63 Score=24.19 Aligned_cols=44 Identities=25% Similarity=0.163 Sum_probs=29.6
Q ss_pred CHHHHHHhhccccEEEcCCCCCC-----chHHHHHHhcCCcEEecCCCch
Q psy15363 49 AKEEHVRRGQLADVCLDTPLCNG-----HTTSMDVLWTGTPVVTLPGETL 93 (130)
Q Consensus 49 ~~~~~~~~~~~~Dv~l~~~~~~~-----g~~~lEAla~G~PvV~~~g~~~ 93 (130)
+.+++..- ...|++++..|... -..+.+|+..|+.|||-+...+
T Consensus 71 d~~~ll~~-~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpl 119 (327)
T 3do5_A 71 KAIEVVRS-ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPL 119 (327)
T ss_dssp CHHHHHHH-SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHH
T ss_pred CHHHHhcC-CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhh
Confidence 44555431 35899988766432 2457999999999999855444
No 404
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=25.42 E-value=1.9e+02 Score=20.69 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=30.9
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc---cEEEcCCCCC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA---DVCLDTPLCN 70 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~---Dv~l~~~~~~ 70 (130)
|+.+++-+--....-+..++.++.+|++ +||.|.-.--.+.+. ... |+.+...||.
T Consensus 145 ~~~~v~~vDis~~al~~A~~n~~~~~l~-~~v~~~~~D~~~~~~---~~f~~~D~IvsnPPyi 203 (284)
T 1nv8_A 145 SDAIVFATDVSSKAVEIARKNAERHGVS-DRFFVRKGEFLEPFK---EKFASIEMILSNPPYV 203 (284)
T ss_dssp SSCEEEEEESCHHHHHHHHHHHHHTTCT-TSEEEEESSTTGGGG---GGTTTCCEEEECCCCB
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECcchhhcc---cccCCCCEEEEcCCCC
Confidence 6666555443222234455567788986 789887432111111 345 9987655553
No 405
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=25.24 E-value=2.4e+02 Score=21.91 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=46.5
Q ss_pred CCEEEecCCCHHHHHHhhc------cccEEEcCC---CCCCc------hHHHHHHh---cCCcEEec--CCCchhhhhHH
Q psy15363 40 HRILFSNVAAKEEHVRRGQ------LADVCLDTP---LCNGH------TTSMDVLW---TGTPVVTL--PGETLASRVAA 99 (130)
Q Consensus 40 ~rv~f~g~~~~~~~~~~~~------~~Dv~l~~~---~~~~g------~~~lEAla---~G~PvV~~--~g~~~~~r~~~ 99 (130)
+=|.+.|..+.+.+...+. .+|..|-.+ .+++. ..+.+++. .++|+|+. .+... .-..
T Consensus 343 NPlDl~g~a~~~~~~~al~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~--~~~~ 420 (457)
T 2csu_A 343 NPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVS--EKAK 420 (457)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTT--HHHH
T ss_pred CCeeCCCCCCHHHHHHHHHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcch--HHHH
Confidence 3477778777665544433 367664322 13211 12556665 68999983 33222 2245
Q ss_pred HHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 100 SQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 100 ~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
.+|...|++-+ +++++=++.+.+|.
T Consensus 421 ~~L~~~Gip~~--~spe~Av~al~~l~ 445 (457)
T 2csu_A 421 ELLEKNGIPTY--ERPEDVASAAYALV 445 (457)
T ss_dssp HHHHTTTCCEE--SSHHHHHHHHHHHH
T ss_pred HHHHhCCCCcc--CCHHHHHHHHHHHH
Confidence 56777777655 77776666665554
No 406
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=25.22 E-value=1.5e+02 Score=19.56 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCC--HHHHHHhh------ccccEEEcCC
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAA--KEEHVRRG------QLADVCLDTP 67 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~--~~~~~~~~------~~~Dv~l~~~ 67 (130)
+.|.+++++.|++ |...+-++ .+++...+ ..+|+.+.|-
T Consensus 43 ~~L~~~L~~~G~~---v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 43 DIIKQLLIENGHK---IIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHHHHTTCE---EEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred HHHHHHHHHCCCE---EEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 5788999999974 55555554 23333322 3479998554
No 407
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=25.19 E-value=23 Score=22.53 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=16.5
Q ss_pred hhccccEEEcCCCCCCchHHHHHHhcCCcEEe
Q psy15363 56 RGQLADVCLDTPLCNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 56 ~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~ 87 (130)
.+..+|+.+.+.|........+.+..|.-++-
T Consensus 77 ~~~~~Divi~at~~~~~~~~~~~l~~g~~vid 108 (144)
T 3oj0_A 77 LIKNNDVIITATSSKTPIVEERSLMPGKLFID 108 (144)
T ss_dssp HHHTCSEEEECSCCSSCSBCGGGCCTTCEEEE
T ss_pred HhcCCCEEEEeCCCCCcEeeHHHcCCCCEEEE
Confidence 34578888766554332222244444554443
No 408
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=25.04 E-value=1.1e+02 Score=20.04 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=15.7
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLD 38 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~ 38 (130)
+.++.++.. ..+...+...+.+|+.
T Consensus 100 g~~~~i~tn--~~~~~~~~~l~~~~l~ 124 (216)
T 3kbb_A 100 RIKLALATS--TPQREALERLRRLDLE 124 (216)
T ss_dssp TCEEEEECS--SCHHHHHHHHHHTTCG
T ss_pred CCCcccccC--CcHHHHHHHHHhcCCC
Confidence 456666653 3455666777788875
No 409
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=25.03 E-value=1.6e+02 Score=19.63 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=32.2
Q ss_pred HhhCC-CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhh-----ccccEEE
Q psy15363 7 LKAVP-NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRG-----QLADVCL 64 (130)
Q Consensus 7 l~~~P-~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~-----~~~Dv~l 64 (130)
.+..| +.+++.+-......+..++.+++.|+. ++|.|.-.-..+.+...- ...|+.+
T Consensus 83 a~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~ 145 (225)
T 3tr6_A 83 GLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-DKIGLRLSPAKDTLAELIHAGQAWQYDLIY 145 (225)
T ss_dssp HTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHHHHHTTTCTTCEEEEE
T ss_pred HHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeCCHHHHHHHhhhccCCCCccEEE
Confidence 34455 566555553222234566677888987 889887533223222222 5678875
No 410
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=24.87 E-value=1.2e+02 Score=18.38 Aligned_cols=64 Identities=8% Similarity=-0.025 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc--ccEEEcCCCCCCch----HHHHHH--hcCCcEEecCC
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL--ADVCLDTPLCNGHT----TSMDVL--WTGTPVVTLPG 90 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~--~Dv~l~~~~~~~g~----~~lEAl--a~G~PvV~~~g 90 (130)
+.+++++++.|+..........-+.+++...-.. +|+.+-..+ .++. ++.+.+ .+.+||+..+.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 67 KALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp HHHHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEEEC
T ss_pred HHHHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEeeC
Confidence 4566777788886324444433455667666554 999865433 3221 334443 34677776643
No 411
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=24.72 E-value=1.2e+02 Score=18.24 Aligned_cols=104 Identities=8% Similarity=0.072 Sum_probs=57.9
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEEE-cC-CCCCCchHHHHHHh--------
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVCL-DT-PLCNGHTTSMDVLW-------- 80 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~l-~~-~~~~~g~~~lEAla-------- 80 (130)
.+++++.+....+..++..+++.|. .+.... +..+....+. ..|+.+ |. .|...|..+++.+.
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~---~v~~~~--~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~ 85 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTN---DITVVT--NGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNT 85 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCS---EEEEES--SHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCC---ceEEEC--CHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCC
Confidence 4677777543345667777766553 344432 3345444443 378884 53 35556777777765
Q ss_pred cCCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 81 TGTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
..+|+|...+........ ..|..+++.. +.+++.+...+..
T Consensus 86 ~~~~ii~~s~~~~~~~~~-----~~g~~~~l~KP~~~~~L~~~i~~~~ 128 (140)
T 3c97_A 86 KRASIIAITADTIDDDRP-----GAELDEYVSKPLNPNQLRDVVLTCH 128 (140)
T ss_dssp CCCCCEEEESSCCSCCCC-----CSSCSEEEESSCCHHHHHHHHHHHH
T ss_pred CceEEEEEeCccchhHHH-----hCChhheEeCCCCHHHHHHHHHHHh
Confidence 357887765432211111 3466676653 6677776665544
No 412
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=24.68 E-value=1.6e+02 Score=19.80 Aligned_cols=60 Identities=23% Similarity=0.188 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccc----c-EEEcCCCCC-CchHHHHHHhc-C-CcEEec
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLA----D-VCLDTPLCN-GHTTSMDVLWT-G-TPVVTL 88 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~----D-v~l~~~~~~-~g~~~lEAla~-G-~PvV~~ 88 (130)
+.+++.++++|+ .+.|.-.=...++..+++.+ | |.++|--|+ .+..+.+|+++ + +|+|=.
T Consensus 38 ~~l~~~a~~~g~---~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~~P~VEV 105 (156)
T 1gtz_A 38 ALCVKAAAAHGG---TVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSVAILDALNTCDGLPVVEV 105 (156)
T ss_dssp HHHHHHHHTTTC---CEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCHHHHHHHHTSTTCCEEEE
T ss_pred HHHHHHHHHcCC---EEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhcCCCCEEEE
Confidence 456667777776 47777666666777766654 4 457887776 47889999865 5 799844
No 413
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=24.63 E-value=2.1e+02 Score=20.99 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=57.7
Q ss_pred EEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC-----CHHHHHHhhcc---ccEEEcCCCCCCc------hHHHHHHh
Q psy15363 15 LWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-----AKEEHVRRGQL---ADVCLDTPLCNGH------TTSMDVLW 80 (130)
Q Consensus 15 l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~-----~~~~~~~~~~~---~Dv~l~~~~~~~g------~~~lEAla 80 (130)
+=+++.+|..-..+-.++.+.|+-...++=+|.. +..|++.++.. .++.+ -+-+.+| -..+++..
T Consensus 155 va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~-l~~E~~g~~e~~~~~f~~~~~ 233 (305)
T 2fp4_A 155 IGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGII-LIGEIGGNAEENAAEFLKQHN 233 (305)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEE-EEEESSSSHHHHHHHHHHHHS
T ss_pred EEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEE-EEEecCCchhhHHHHHHHHHH
Confidence 3344433333345667788878765667667654 35777777744 33332 1223333 34555432
Q ss_pred ---cCCcEEecC-CCch-hhh-----------------hHHHHHHhcCCCCceecCHHHHHHHHHHhc
Q psy15363 81 ---TGTPVVTLP-GETL-ASR-----------------VAASQLATLGCPELIARTHKEYQDIAIRLG 126 (130)
Q Consensus 81 ---~G~PvV~~~-g~~~-~~r-----------------~~~~~l~~~g~~~~va~~~~~y~~~a~~l~ 126 (130)
.++|||++. |.+. .++ .-.+.++..|. ..+++.+++.+.+..+.
T Consensus 234 ~~~~~KPVv~~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv--~~v~~~~el~~~~~~~~ 299 (305)
T 2fp4_A 234 SGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGV--VVSMSPAQLGTTIYKEF 299 (305)
T ss_dssp CSTTCCCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTC--EECSSTTCHHHHHHHHH
T ss_pred HhcCCCCEEEEEecCCccccccccchhhhhccCCccHHHHHHHHHHCCC--eEeCCHHHHHHHHHHHH
Confidence 299999884 3322 111 11223443333 45677777777766654
No 414
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=24.54 E-value=83 Score=23.37 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=25.9
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHH-HHHcCCCCCCEEEec
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQAT-AQALGLDQHRILFSN 46 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~-~~~~g~~~~rv~f~g 46 (130)
..|.+..|++++++++. |.. .+-.. .+..|++++||+=++
T Consensus 107 ~~i~~~~p~a~vivvtN--Pvd-~~t~~~~k~sg~p~~rviG~~ 147 (321)
T 3p7m_A 107 EGIKHNCPNAFVICITN--PLD-IMVNMLQKFSGVPDNKIVGMA 147 (321)
T ss_dssp HHHHHHCTTCEEEECCS--SHH-HHHHHHHHHHCCCGGGEEEEC
T ss_pred HHHHHHCCCcEEEEecC--chH-HHHHHHHHhcCCCHHHEEeec
Confidence 45667789999999973 321 22222 233478778888877
No 415
>3sxu_B DNA polymerase III subunit PSI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} PDB: 1em8_B* 3gli_O*
Probab=24.48 E-value=66 Score=21.18 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=28.6
Q ss_pred CcEEEEeecCcc--cHHHHHHHHHHcCCCCCCEEEec
Q psy15363 12 NSILWLLKFPAV--GEANIQATAQALGLDQHRILFSN 46 (130)
Q Consensus 12 ~a~l~i~g~~~~--~~~~l~~~~~~~g~~~~rv~f~g 46 (130)
+.+|+|+....+ ...-+++.++..+++++.+.|+.
T Consensus 37 ~~rLliVs~~~p~~~~~L~~dVLrsl~L~~~q~~~lt 73 (138)
T 3sxu_B 37 HVRLVMVANDLPALTDPLVSDVLRALTVSPDQVLQLT 73 (138)
T ss_dssp TCCEEEECSSCCCTTCHHHHHHHHHHTCCGGGEEEEC
T ss_pred ceEEEEEeCCCCcccCHHHHHHHHHcCCCHHHeeeeC
Confidence 789999996433 24578889999999999999987
No 416
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=24.40 E-value=1.8e+02 Score=20.11 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=42.9
Q ss_pred hHHHHHhhC--CCcEEEEeecCc-------ccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEc
Q psy15363 2 SDIFVLKAV--PNSILWLLKFPA-------VGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 65 (130)
Q Consensus 2 ~w~~il~~~--P~a~l~i~g~~~-------~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~ 65 (130)
.|.++.+.. ++..|+|+-+-+ ...+.+-+++.+.--. -.|+++|+.+.+++. ..||+.-.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~-~~vIlTGr~ap~~l~---e~AD~VTe 176 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGH-QTVIITGRGCHRDIL---DLADTVSE 176 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTT-CEEEEECSSCCHHHH---HHCSEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCC-CEEEEECCCCcHHHH---HhCcceee
Confidence 588888888 788888886421 1345677777654432 579999999988765 48999853
No 417
>1gm6_A SAL, salivary lipocalin; odorant-binding protein; HET: NAG; 2.13A {Sus scrofa} SCOP: b.60.1.1
Probab=24.36 E-value=83 Score=20.65 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=24.9
Q ss_pred EEEEeecCcc-c---HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 14 ILWLLKFPAV-G---EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 14 ~l~i~g~~~~-~---~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.++|++.... . .+.++++++++|++.++++++...
T Consensus 119 ~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~i~~~~q~ 157 (175)
T 1gm6_A 119 LMEFYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKI 157 (175)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHTTTCCGGGEEEGGGS
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 3677775322 2 457778899999998899987653
No 418
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=24.26 E-value=68 Score=22.58 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=30.4
Q ss_pred EEEEeecCcc----c---H---HHHHHHHHHcCCCCCCEEEec-CCCHHHHHHhhccccEEEcCCC
Q psy15363 14 ILWLLKFPAV----G---E---ANIQATAQALGLDQHRILFSN-VAAKEEHVRRGQLADVCLDTPL 68 (130)
Q Consensus 14 ~l~i~g~~~~----~---~---~~l~~~~~~~g~~~~rv~f~g-~~~~~~~~~~~~~~Dv~l~~~~ 68 (130)
.|+|.|++.. . . +.+.+.+++.|.+ =+++-+. ..+.++....+..||.++..+|
T Consensus 28 iLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~e-v~~~dL~~~~Dv~~~~~~l~~aD~iv~~~P 92 (218)
T 3rpe_A 28 VLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQ-VKITTVDQGYDIESEIENYLWADTIIYQMP 92 (218)
T ss_dssp EEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCC-EEEEEGGGCCCHHHHHHHHHHCSEEEEEEE
T ss_pred eEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCE-EEEEECCCccCHHHHHHHHHhCCEEEEECC
Confidence 5777776521 1 1 2233344455654 2333333 3455667788899999976655
No 419
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=24.17 E-value=1.8e+02 Score=20.16 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCCCCEEEecCC---CHHH---HH-Hhh-ccccEEEc-CCCCCC-chHHHHHHhcCCcEEecCC
Q psy15363 26 ANIQATAQALGLDQHRILFSNVA---AKEE---HV-RRG-QLADVCLD-TPLCNG-HTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~---~~~~---~~-~~~-~~~Dv~l~-~~~~~~-g~~~lEAla~G~PvV~~~g 90 (130)
..+++.++++|+. +.+...- +.+. .. .+. +.+|-++- +..... ...+-++...|+|||+...
T Consensus 23 ~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~ 94 (297)
T 3rot_A 23 QGAKKAAEELKVD---LQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDT 94 (297)
T ss_dssp HHHHHHHHHHTCE---EEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHhCcE---EEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcC
Confidence 4566778888863 5454422 3222 22 222 34786653 332222 3344566778999999854
No 420
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*
Probab=23.84 E-value=65 Score=24.01 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=27.3
Q ss_pred CHHHHHHhhccccEEEcCCCCC----Cc-hHHHHHHhcCCcEEecCC
Q psy15363 49 AKEEHVRRGQLADVCLDTPLCN----GH-TTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 49 ~~~~~~~~~~~~Dv~l~~~~~~----~g-~~~lEAla~G~PvV~~~g 90 (130)
+.+++. -...|++++..|-. .. ..+.+|+..|+.|||...
T Consensus 78 d~~~ll--~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK 122 (331)
T 3c8m_A 78 SASEAL--ARDFDIVVDATPASADGKKELAFYKETFENGKDVVTANK 122 (331)
T ss_dssp CHHHHH--HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCC
T ss_pred CHHHHh--CCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCc
Confidence 344443 24689998876542 12 357899999999999643
No 421
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=23.83 E-value=57 Score=21.21 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=19.7
Q ss_pred ccccEEEcCCCCC-Cc-----hHHHHHHhcCCcEEecC
Q psy15363 58 QLADVCLDTPLCN-GH-----TTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 58 ~~~Dv~l~~~~~~-~g-----~~~lEAla~G~PvV~~~ 89 (130)
...|+++++..-+ .. .---.|+..|+|++|..
T Consensus 95 g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~~ 132 (143)
T 2yvq_A 95 GSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTNF 132 (143)
T ss_dssp TSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECSH
T ss_pred CCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcCH
Confidence 3488888765321 11 11334888999999863
No 422
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.67 E-value=47 Score=23.80 Aligned_cols=115 Identities=12% Similarity=0.021 Sum_probs=63.5
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHc-CCCCCCEEEecCCCHHHHHHhhccccEE-EcCCC-CCCchHHHHHHhcCCcEEe
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQAL-GLDQHRILFSNVAAKEEHVRRGQLADVC-LDTPL-CNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~-g~~~~rv~f~g~~~~~~~~~~~~~~Dv~-l~~~~-~~~g~~~lEAla~G~PvV~ 87 (130)
++-.+.++|.+|.++..|-+.+.-+ .-...+|.+-|.-....... ++ ..+. +...+ .-.+.|+.|-+..+...
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~-~~-~~i~~v~q~~~l~~~ltv~enl~~~~~~-- 115 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE-VR-KLISYLPEEAGAYRNMQGIEYLRFVAGF-- 115 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHH-HH-TTEEEECTTCCCCTTSBHHHHHHHHHHH--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHH-Hh-hcEEEEcCCCCCCCCCcHHHHHHHHHHH--
Confidence 5667889998888999988877632 11124688876421111111 11 2233 32222 22345777777654211
Q ss_pred cCCCchh--hhhHHHHHHhcCCCCcee-------cCHHHHHHHHHHhccCCC
Q psy15363 88 LPGETLA--SRVAASQLATLGCPELIA-------RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 88 ~~g~~~~--~r~~~~~l~~~g~~~~va-------~~~~~y~~~a~~l~~d~e 130 (130)
.+.... ......++..+|+.++.. .....-+.+|..|+.+|+
T Consensus 116 -~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 166 (256)
T 1vpl_A 116 -YASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 166 (256)
T ss_dssp -HCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred -cCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 111111 122356778889876543 245678888889988875
No 423
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=23.38 E-value=1.3e+02 Score=19.64 Aligned_cols=35 Identities=9% Similarity=0.265 Sum_probs=24.8
Q ss_pred EEEEeecCcc----cHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 14 ILWLLKFPAV----GEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 14 ~l~i~g~~~~----~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.++|++.... ..+.+++.++++|++.++++++...
T Consensus 123 ~~~ilsR~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~q~ 161 (174)
T 2hzq_A 123 FAWILARNVALPPETVDSLKNILTSNNIDVKKMTVTDQV 161 (174)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHHTTCCCTTCEECCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHcCCCHHHeEECCCC
Confidence 4566664322 2357778889999998999988764
No 424
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.37 E-value=1.9e+02 Score=20.02 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHHHHH----Hhh-ccccEEEc-CCCCCCch-HHHHHHhcCCcEEecCC
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKEEHV----RRG-QLADVCLD-TPLCNGHT-TSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~~~~----~~~-~~~Dv~l~-~~~~~~g~-~~lEAla~G~PvV~~~g 90 (130)
+.+++.++++|.. +.+...-+.++.. .+. +.+|-++- +....... .+-++...|+|||+...
T Consensus 22 ~gi~~~a~~~g~~---~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 22 KFADKAGKDLGFE---VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHTEE---EEEEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHcCCE---EEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCC
Confidence 4566778888863 4444433433221 222 34787753 33222222 24567789999999863
No 425
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=23.29 E-value=1.3e+02 Score=19.13 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=25.1
Q ss_pred EEEEeecCcc-c---HHHHHHHHHHcCCCCCCEEEecCCC
Q psy15363 14 ILWLLKFPAV-G---EANIQATAQALGLDQHRILFSNVAA 49 (130)
Q Consensus 14 ~l~i~g~~~~-~---~~~l~~~~~~~g~~~~rv~f~g~~~ 49 (130)
.++|.+.... . .+.++++++++|++.++++++....
T Consensus 113 ~~~llsR~~~l~~~~~~~~~~~~~~~G~~~~~i~~~~q~~ 152 (164)
T 1epa_A 113 TMKLYSRSLDDNGEALYNFRKITSDHGFSETDLYILKHDL 152 (164)
T ss_dssp EEEEEESCSSCCHHHHHHHHHHHHHTTCCGGGEEECCCCC
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCCC
Confidence 4666775322 2 4567788899999988999987653
No 426
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C
Probab=23.19 E-value=1.1e+02 Score=20.13 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=24.8
Q ss_pred EEEeecCcc-c---HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 15 LWLLKFPAV-G---EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 15 l~i~g~~~~-~---~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
++|.+.... . .+.+++.++++|++.++++++...
T Consensus 128 ~~llsR~p~l~~e~~~~f~~~~~~~G~~~~~i~~~~q~ 165 (182)
T 1lf7_A 128 VKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIFYFPKY 165 (182)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHHHTTCCGGGEEECCSS
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHcCCCHHHEEeCCCC
Confidence 777775322 2 457778899999998899987653
No 427
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=23.17 E-value=1.1e+02 Score=22.40 Aligned_cols=45 Identities=9% Similarity=0.160 Sum_probs=27.5
Q ss_pred HHHHhhCCCcEEEEeecCcccH-HHHH-HHHHHc-CCCCCCEEEecCCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGE-ANIQ-ATAQAL-GLDQHRILFSNVAA 49 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~-~~l~-~~~~~~-g~~~~rv~f~g~~~ 49 (130)
..|.+..|++++++++ ++.+- ..+. +.+++. |++++||+.+..++
T Consensus 102 ~~i~~~~p~a~viv~s-NPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld 149 (314)
T 1mld_A 102 AACAQHCPDAMICIIS-NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLD 149 (314)
T ss_dssp HHHHHHCTTSEEEECS-SCHHHHHHHHHHHHHHTTCCCTTSEEECCHHH
T ss_pred HHHHhhCCCeEEEEEC-CCcchhHHHHHHHHHHcCCCCcceEEEeeccc
Confidence 3456668999999986 32221 1111 445555 58778998885554
No 428
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=23.13 E-value=82 Score=19.48 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=24.4
Q ss_pred HHHHhcCCCCce-ecCHHHHHHHHHHhccCCC
Q psy15363 100 SQLATLGCPELI-ARTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 100 ~~l~~~g~~~~v-a~~~~~y~~~a~~l~~d~e 130 (130)
.-++..|+..+. +.+.++..+...++++|++
T Consensus 22 ~GFrLaGi~~~~~~~~~ee~~~~~~~l~~~~d 53 (102)
T 2i4r_A 22 IGFMLAGISDIYEVTSDEEIVKAVEDVLKRDD 53 (102)
T ss_dssp HHHHHTTCCCEEECCSHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCCCcccCCCCHHHHHHHHHHHhhCCC
Confidence 335667999988 8889999988888888753
No 429
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=23.12 E-value=1.2e+02 Score=17.85 Aligned_cols=110 Identities=7% Similarity=-0.001 Sum_probs=60.9
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC-CHHHHHHhhccccEE-EcCC-CCCCchHHHHHHh---cCCcEE
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-AKEEHVRRGQLADVC-LDTP-LCNGHTTSMDVLW---TGTPVV 86 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~-~~~~~~~~~~~~Dv~-l~~~-~~~~g~~~lEAla---~G~PvV 86 (130)
.+++++.+.....+.+++.+++.|. .-+...... ..-+...- ...|+. +|.. |...|..+++.+. ..+|+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHHH-HCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHHh-cCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEE
Confidence 4677787644456788888888774 223133222 22222211 347888 4543 5556777776655 467888
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhcc
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLGT 127 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~~ 127 (130)
.+.+..-..... -....|..+++.. +.+++.+...++.+
T Consensus 79 ~~s~~~~~~~~~--~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 119 (134)
T 3f6c_A 79 IVSAKNDHFYGK--HCADAGANGFVSKKEGMNNIIAAIEAAKN 119 (134)
T ss_dssp EEECC---CTHH--HHHHTTCSEEEEGGGCTHHHHHHHHHHHT
T ss_pred EEeCCCChHHHH--HHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 776543222221 1224588876653 66777777666554
No 430
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=22.92 E-value=1.3e+02 Score=18.02 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=39.7
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
+-.+++-|.-...++.++++++++|-. +.+.++. ..|+++..- ..|..+-.|...|+|||.-
T Consensus 10 G~~~v~TG~l~~~R~e~~~~i~~~Gg~-----v~~sVsk--------kt~~LV~g~--~~gsK~~kA~~lgI~Ii~E 71 (92)
T 1l7b_A 10 GLTFVITGELSRPREEVKALLRRLGAK-----VTDSVSR--------KTSYLVVGE--NPGSKLEKARALGVPTLTE 71 (92)
T ss_dssp TCEEECSTTTTSCHHHHHHHHHHTTCE-----EESCCSS--------SCCCBEECS--SSSTTHHHHHCSSSCCEEH
T ss_pred CcEEEEecCCCCCHHHHHHHHHHcCCE-----EeCcccC--------CeeEEEeCC--CCChHHHHHHHcCCcEEeH
Confidence 456666664222678888888888852 4555542 344444321 2357788899999999973
No 431
>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str}
Probab=22.85 E-value=1.4e+02 Score=19.89 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=39.6
Q ss_pred HHHH-HhhCCCcEEEEeecC---c-----cc----------HHHHHHHHHHcCCCCCCEEEecCCC--------HHHHHH
Q psy15363 3 DIFV-LKAVPNSILWLLKFP---A-----VG----------EANIQATAQALGLDQHRILFSNVAA--------KEEHVR 55 (130)
Q Consensus 3 w~~i-l~~~P~a~l~i~g~~---~-----~~----------~~~l~~~~~~~g~~~~rv~f~g~~~--------~~~~~~ 55 (130)
++.+ ++ .|+.++.|.|.. | .. -..+++++.+.|++++|+...|+-. ..+-..
T Consensus 73 ia~~ll~-~~~~~i~I~GhTD~~g~~~~~~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G~~~P~~~n~t~~~r~ 151 (174)
T 3khn_A 73 LKDLFIR-RREQNINIKGFTDDVQPSANARFKDNWEVSALRSVNVLRYFLGAGIEPARLTATGLGELDPLFPNTSDENRA 151 (174)
T ss_dssp HHHHHHH-TTTCEEEEEEECCSCCCCTTSSCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEETSSCSSCSSSHHHHH
T ss_pred HHHHHHh-CCCCeEEEEEEeCCCCCcCCCCchhHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEcCcCCCCCCCChhHHh
Confidence 4555 55 677889998852 2 11 1245667777799989998876532 122334
Q ss_pred hhccccEEEcC
Q psy15363 56 RGQLADVCLDT 66 (130)
Q Consensus 56 ~~~~~Dv~l~~ 66 (130)
.=+.++|.+.+
T Consensus 152 ~NRRVei~i~~ 162 (174)
T 3khn_A 152 RNRRVEFVLER 162 (174)
T ss_dssp HHSEEEEEEEC
T ss_pred hCCCEEEEEEe
Confidence 45778888744
No 432
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=22.76 E-value=66 Score=20.99 Aligned_cols=26 Identities=8% Similarity=0.321 Sum_probs=13.4
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLD 38 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~ 38 (130)
+..+++.| +.+..+.+++.++++|++
T Consensus 113 ~~~vy~CG-P~~mm~~v~~~l~~~Gv~ 138 (158)
T 3lrx_A 113 WDLVFMVG-PVGDQKQVFEVVKEYGVP 138 (158)
T ss_dssp CSEEEEES-CHHHHHHHHHHHGGGTCC
T ss_pred CCEEEEEC-CHHHHHHHHHHHHHcCCC
Confidence 33444444 334455556666666664
No 433
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=22.75 E-value=2.3e+02 Score=20.71 Aligned_cols=63 Identities=8% Similarity=-0.045 Sum_probs=41.4
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEec
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~ 88 (130)
+..+.+-|..++.++.+++++..+|-. +.+.++. ..++.++...+ .|...--|...|+|||+.
T Consensus 202 g~~i~~tG~~~~~r~~l~~li~~~GG~-----~~~~ls~-------~~~THLI~~~~--~g~K~~~A~~~gi~IV~~ 264 (298)
T 3olc_X 202 GCIICVTGLCGLDRKEVQQLTVKHGGQ-----YMGQLKM-------NECTHLIVQEP--KGQKYECAKRWNVHCVTT 264 (298)
T ss_dssp TCEEEECSCCHHHHHHHHHHHHHTTCE-----ECSSCCT-------TTCCEEECSSS--CSHHHHHHHHTTCEEECH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHcCCE-----EeceecC-------CCceEEEEeCC--CchHHHHHHHCCCeEEeH
Confidence 456666665444678899999998853 4454431 24666664433 356677788889999974
No 434
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=22.75 E-value=2.1e+02 Score=22.74 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=39.2
Q ss_pred ccEEEcCC-CCCCchHHHHHHhc--CCcEEecCCCchhhhhH--HHHHHh-cC---CCCceecCHHHHHHHH
Q psy15363 60 ADVCLDTP-LCNGHTTSMDVLWT--GTPVVTLPGETLASRVA--ASQLAT-LG---CPELIARTHKEYQDIA 122 (130)
Q Consensus 60 ~Dv~l~~~-~~~~g~~~lEAla~--G~PvV~~~g~~~~~r~~--~~~l~~-~g---~~~~va~~~~~y~~~a 122 (130)
|+|...++ |++----+..|++. |+||.+.+|++....+- ...+.. .| -+.+|-+|-.+.....
T Consensus 71 a~v~~~~~n~~stqd~~aaal~~~~gi~v~a~~g~~~~ey~~~~~~~l~~~~~~~~~~~~i~ddggd~~~~~ 142 (479)
T 1v8b_A 71 AQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLV 142 (479)
T ss_dssp CEEEEECSSSSCCCHHHHHHHTTSTTEEEECCTTCCHHHHHHHHHHHHCCSSSSSCSCSEEEESSSHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHhhcCCceEEEeCCCCHHHHHHHHHHHhcCcccccCCCCEEEeccchHHHHH
Confidence 88887554 66655567778876 99999999986544332 222322 12 3677777755444443
No 435
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.70 E-value=2e+02 Score=19.95 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCCCCEEEe-cCCC-HHHHHHhh--ccccEEEc-CCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 26 ANIQATAQALGLDQHRILFS-NVAA-KEEHVRRG--QLADVCLD-TPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~-g~~~-~~~~~~~~--~~~Dv~l~-~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
..+++.++++|.. =+.+. ..-+ ..+....+ +.+|-++- +.... ...++.+..|+|||+...
T Consensus 31 ~gi~~~a~~~g~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~~~~~iPvV~i~~ 96 (289)
T 3k9c_A 31 EQIYAAATRRGYD--VMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFD--TDELGALADRVPALVVAR 96 (289)
T ss_dssp HHHHHHHHHTTCE--EEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCC--HHHHHHHHTTSCEEEESS
T ss_pred HHHHHHHHHCCCE--EEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCC--HHHHHHHHcCCCEEEEcC
Confidence 4566778888863 22222 2211 22333333 34676643 33222 256666666999998864
No 436
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=22.68 E-value=1.6e+02 Score=18.95 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=19.5
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCC
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQATAQALGLD 38 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~ 38 (130)
.++++..|+-+++++..+....+.+++++++.|..
T Consensus 108 ~~~~~~lpgG~l~~~~~~~~~~~~l~~~l~~~gf~ 142 (170)
T 3q87_B 108 DRFVDAVTVGMLYLLVIEANRPKEVLARLEERGYG 142 (170)
T ss_dssp HHHHHHCCSSEEEEEEEGGGCHHHHHHHHHHTTCE
T ss_pred HHHHhhCCCCEEEEEEecCCCHHHHHHHHHHCCCc
Confidence 34444447666666553233455666666666653
No 437
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1
Probab=22.67 E-value=1.2e+02 Score=22.70 Aligned_cols=88 Identities=8% Similarity=-0.058 Sum_probs=45.6
Q ss_pred HHHHHhhCCCcEEEEeecCcccHHHHHHHHH---HcCCCCC-------CEEE-------ecCCCHHHHHHhhccccEEEc
Q psy15363 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQ---ALGLDQH-------RILF-------SNVAAKEEHVRRGQLADVCLD 65 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~~~~~~l~~~~~---~~g~~~~-------rv~f-------~g~~~~~~~~~~~~~~Dv~l~ 65 (130)
..+++.+.|+..++-+.+...+.+.+..+++ -+|--.. .+.+ ....+.+++..--..+|+.+.
T Consensus 18 ~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~~l~~~~~~vDvV~e 97 (335)
T 1u8f_O 18 VTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVE 97 (335)
T ss_dssp HHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGGCCTTTTTCCEEEE
T ss_pred HHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHHHCccccCCCCEEEE
Confidence 3456666799998888752124455555544 1221101 1222 222222332100136899987
Q ss_pred CCC-CCCchHHHHHHhcCCcEEecCC
Q psy15363 66 TPL-CNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 66 ~~~-~~~g~~~lEAla~G~PvV~~~g 90 (130)
+.| +...-..-.++..|..+|...+
T Consensus 98 atg~~~~~e~a~~~l~aGak~V~iSa 123 (335)
T 1u8f_O 98 STGVFTTMEKAGAHLQGGAKRVIISA 123 (335)
T ss_dssp CSSSCCSHHHHGGGGGGTCSEEEESS
T ss_pred CCCchhhHHHHHHHHhCCCeEEEecc
Confidence 765 4444556667788977666543
No 438
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=22.66 E-value=1.2e+02 Score=24.45 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=45.8
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCC-----CHHH------------------------HHHhhcccc
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVA-----AKEE------------------------HVRRGQLAD 61 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~-----~~~~------------------------~~~~~~~~D 61 (130)
-+.++++.|- |..--.+.+++.+.|++.+||.+..+- ++++ +...+..+|
T Consensus 218 ~d~riV~~GA-GaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~ad 296 (487)
T 3nv9_A 218 HECRMVFIGA-GSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGAD 296 (487)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCS
T ss_pred hhcEEEEECC-CHHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCC
Confidence 4688899985 444334566666789876688876442 1222 223345578
Q ss_pred EEEcCCC---CCCchHHHHHHhcCCcEEe
Q psy15363 62 VCLDTPL---CNGHTTSMDVLWTGTPVVT 87 (130)
Q Consensus 62 v~l~~~~---~~~g~~~lEAla~G~PvV~ 87 (130)
||+-.+. -.+.--++++|+ --|+|-
T Consensus 297 VlIG~S~~~pg~ft~e~V~~Ma-~~PIIF 324 (487)
T 3nv9_A 297 VLISLSTPGPGVVKAEWIKSMG-EKPIVF 324 (487)
T ss_dssp EEEECCCSSCCCCCHHHHHTSC-SSCEEE
T ss_pred EEEEecccCCCCCCHHHHHhhc-CCCEEE
Confidence 8887662 234455777775 577763
No 439
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=22.64 E-value=37 Score=21.62 Aligned_cols=76 Identities=8% Similarity=0.057 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEec------CCCHHHHHHhhccccEEEcCCCCCCchHH-HHHHhcCCcEEecCCCchhhhh
Q psy15363 25 EANIQATAQALGLDQHRILFSN------VAAKEEHVRRGQLADVCLDTPLCNGHTTS-MDVLWTGTPVVTLPGETLASRV 97 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g------~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~-lEAla~G~PvV~~~g~~~~~r~ 97 (130)
.+.|++.++++|++ =.|.--| .++.+++ ..+|+.+-...- .+ -++-..|+||+-.+-.
T Consensus 25 AeaL~~aA~~~G~~-ikVEtqGs~G~~n~Lt~~~I----~~Ad~VIiA~d~----~v~~~~RF~GK~v~~~~v~------ 89 (111)
T 2kyr_A 25 AQALEEAAVEAGYE-VKIETQGADGIQNRLTAQDI----AEATIIIHSVAV----TPEDNERFESRDVYEITLQ------ 89 (111)
T ss_dssp HHHHHHHHHHTSSE-EEEEEEETTEEESCCCHHHH----HHCSEEEEEESS----CCTTGGGGTTSCEEEEETT------
T ss_pred HHHHHHHHHHCCCe-EEEEecCCCCcCCCCCHHHH----HhCCEEEEEeCC----CcCchhhcCCCeEEEeCHH------
Confidence 57899999999985 4555555 3445555 578977522211 11 1234579999965421
Q ss_pred HHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 98 AASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 98 ~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
+. -.+++.+++++.++++
T Consensus 90 -----------~a-i~~p~~~l~~a~~~~~ 107 (111)
T 2kyr_A 90 -----------DA-IKNAAGIIKEIEEMIA 107 (111)
T ss_dssp -----------HH-HHSHHHHHHHHHHHHH
T ss_pred -----------HH-HHCHHHHHHHHHHHHh
Confidence 11 2677788888777654
No 440
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=22.64 E-value=1.4e+02 Score=20.94 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=51.4
Q ss_pred hhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEc--CCC-----CCCchHHHHHHh
Q psy15363 8 KAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD--TPL-----CNGHTTSMDVLW 80 (130)
Q Consensus 8 ~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~--~~~-----~~~g~~~lEAla 80 (130)
...|+++++-+--+...-+..++.++..|+. +++.|.... +.. .=...|+.|- ..| .+.+..+++++-
T Consensus 69 ~~~p~a~~~A~Di~~~~leiar~~~~~~g~~-~~v~~~d~~--~~~--~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~ 143 (200)
T 3fzg_A 69 NENEKIIYHAYDIDRAEIAFLSSIIGKLKTT-IKYRFLNKE--SDV--YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFH 143 (200)
T ss_dssp CSSCCCEEEEECSCHHHHHHHHHHHHHSCCS-SEEEEECCH--HHH--TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCE
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ccEEEeccc--ccC--CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhC
Confidence 4467776544443222345566777888986 799994332 221 2244788853 333 345678999999
Q ss_pred cCCcEEecCCCchhhh
Q psy15363 81 TGTPVVTLPGETLASR 96 (130)
Q Consensus 81 ~G~PvV~~~g~~~~~r 96 (130)
.|-=+|+.+.+.+.+|
T Consensus 144 pggvfISfptksl~Gr 159 (200)
T 3fzg_A 144 TQNFVISFPIKSLSGK 159 (200)
T ss_dssp EEEEEEEEECCCCC--
T ss_pred CCCEEEEeChHHhcCC
Confidence 9999999885544333
No 441
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=22.60 E-value=2.5e+02 Score=21.21 Aligned_cols=112 Identities=8% Similarity=-0.010 Sum_probs=56.6
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCC-----------------CCCEEEec-------CCCHHHHHHhhc--cccEEEcC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLD-----------------QHRILFSN-------VAAKEEHVRRGQ--LADVCLDT 66 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~-----------------~~rv~f~g-------~~~~~~~~~~~~--~~Dv~l~~ 66 (130)
-+++|+|. |...-.+.+.++++|+. .++....| ..+.+.+..+.+ .+|+.+..
T Consensus 7 ~kiLI~g~-g~~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i~p~ 85 (446)
T 3ouz_A 7 KSILIANR-GEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPG 85 (446)
T ss_dssp CEEEECCC-HHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEEECC
T ss_pred ceEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEEEEC
Confidence 36777774 44444566778888863 01222232 122234444443 37776644
Q ss_pred CCCC--CchHHHHHHhcCCcEEecCCCch---hhh-hHHHHHHhcCCC--Cc---eecCHHHHHHHHHHh
Q psy15363 67 PLCN--GHTTSMDVLWTGTPVVTLPGETL---ASR-VAASQLATLGCP--EL---IARTHKEYQDIAIRL 125 (130)
Q Consensus 67 ~~~~--~g~~~lEAla~G~PvV~~~g~~~---~~r-~~~~~l~~~g~~--~~---va~~~~~y~~~a~~l 125 (130)
+.+. .....-..-..|+|++..+.+.. ..+ ....+++..|++ .+ ...+.++..+.+.++
T Consensus 86 ~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~ 155 (446)
T 3ouz_A 86 YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEI 155 (446)
T ss_dssp SSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHh
Confidence 4221 12222223347888764332221 122 235567778886 33 457787776665543
No 442
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=22.45 E-value=1.2e+02 Score=23.81 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=27.0
Q ss_pred HHHHHHhcCCcEEecCCCc--hhhhhHHHHHHhcCCCC
Q psy15363 74 TSMDVLWTGTPVVTLPGET--LASRVAASQLATLGCPE 109 (130)
Q Consensus 74 ~~lEAla~G~PvV~~~g~~--~~~r~~~~~l~~~g~~~ 109 (130)
.+.=|+++|-+||..+++. ..+..-+.++...|+|.
T Consensus 168 ~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~ 205 (484)
T 3ifg_A 168 KVGPALAAGCPIVVKPAESTPFSALAMAFLAERAGVPK 205 (484)
T ss_dssp HHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCCCc
Confidence 3567999999999987753 34555566778889985
No 443
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris}
Probab=22.42 E-value=77 Score=20.86 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=26.0
Q ss_pred EEEEeecCc----ccHHHHHHHHHHcCCCCCCEEEecCCC
Q psy15363 14 ILWLLKFPA----VGEANIQATAQALGLDQHRILFSNVAA 49 (130)
Q Consensus 14 ~l~i~g~~~----~~~~~l~~~~~~~g~~~~rv~f~g~~~ 49 (130)
.+++.|... ...+.++++++++|++.++++++....
T Consensus 116 ~~~ll~R~~~~~~e~~~~f~~~~~~~Gl~~~~i~~~~~~~ 155 (170)
T 3l4r_A 116 VAHLMVRDLSRQQDFLPAFESVCEDIGLHKDQIVVLSDDD 155 (170)
T ss_dssp EEEEEESCGGGTTTTHHHHHHHHHHTTCCGGGEEECCTTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCCC
Confidence 345666432 236788899999999988999887653
No 444
>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira interrogans} PDB: 2afv_A*
Probab=22.36 E-value=2.2e+02 Score=20.43 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.0
Q ss_pred CCcEEecCCCchhhhhHHHHHHhc
Q psy15363 82 GTPVVTLPGETLASRVAASQLATL 105 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~ 105 (130)
++|-|+..|+.=.+-+.+++++++
T Consensus 190 ~vP~I~~~GrkGGS~vAaAivNAL 213 (231)
T 2afr_A 190 SIPYILTMGRKGGSTIAVAILHAL 213 (231)
T ss_dssp CCCEEEECSSCCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 799999988877777777777654
No 445
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=22.30 E-value=2.5e+02 Score=20.98 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHH-hcCCcEEecCCCch---hhhh-HHHHHHhcCCCC---ceecCHHHHHHHHHH
Q psy15363 75 SMDVL-WTGTPVVTLPGETL---ASRV-AASQLATLGCPE---LIARTHKEYQDIAIR 124 (130)
Q Consensus 75 ~lEAl-a~G~PvV~~~g~~~---~~r~-~~~~l~~~g~~~---~va~~~~~y~~~a~~ 124 (130)
+.+.+ ..|+|++..+.+.. .++. ...+++..|++- ...++.++..+.+.+
T Consensus 78 ~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~ 135 (422)
T 2xcl_A 78 LVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQE 135 (422)
T ss_dssp HHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHH
T ss_pred HHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHh
Confidence 34444 67999985443322 2332 456788888863 345677766554433
No 446
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=22.26 E-value=2.8e+02 Score=21.61 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=40.5
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC--H-HHHH------------HhhccccEEEcCCCCC-CchHHH
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--K-EEHV------------RRGQLADVCLDTPLCN-GHTTSM 76 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~--~-~~~~------------~~~~~~Dv~l~~~~~~-~g~~~l 76 (130)
-++.++|-++.+...+.+++.+.|. +|......+ . +++. ..+..+|+++-+.-.. ..-.+.
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~G~---~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~ 99 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANEGY---QISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIV 99 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTC---EEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHH
T ss_pred CEEEEEEEcHhhHHHHHHHHHhCCC---eEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHH
Confidence 4677888766777777888888874 344433221 1 1111 1234578886554221 123456
Q ss_pred HHHhcCCcEEe
Q psy15363 77 DVLWTGTPVVT 87 (130)
Q Consensus 77 EAla~G~PvV~ 87 (130)
+|...|+||+.
T Consensus 100 ~a~~~gi~v~~ 110 (494)
T 4hv4_A 100 AAREARIPVIR 110 (494)
T ss_dssp HHHHTTCCEEE
T ss_pred HHHHCCCCEEc
Confidence 67777877765
No 447
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}
Probab=22.25 E-value=51 Score=24.90 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=23.0
Q ss_pred ccccEEEcCCCCCCchHHH--HHHhcCCcEEecCC
Q psy15363 58 QLADVCLDTPLCNGHTTSM--DVLWTGTPVVTLPG 90 (130)
Q Consensus 58 ~~~Dv~l~~~~~~~g~~~l--EAla~G~PvV~~~g 90 (130)
..+|+.+++.+.+.+.... .++..|++||...+
T Consensus 80 ~~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap 114 (343)
T 2yyy_A 80 EDADIVVDGAPKKIGKQNLENIYKPHKVKAILQGG 114 (343)
T ss_dssp GGCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTT
T ss_pred cCCCEEEECCCccccHHHHHHHHHHCCCEEEECCC
Confidence 5799999876654434444 47788999887544
No 448
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=22.16 E-value=1.4e+02 Score=18.08 Aligned_cols=108 Identities=9% Similarity=0.048 Sum_probs=52.8
Q ss_pred EEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc--cccEE-EcC-CCCCCchHHHHHHh---cCCcEE
Q psy15363 14 ILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ--LADVC-LDT-PLCNGHTTSMDVLW---TGTPVV 86 (130)
Q Consensus 14 ~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~--~~Dv~-l~~-~~~~~g~~~lEAla---~G~PvV 86 (130)
+++++.+....+..++..+...+.. -.+... ..+..+....+. ..|+. +|. .|...|..+++.+. ..+|+|
T Consensus 4 ~ILivdd~~~~~~~l~~~L~~~~~~-~~~~~~-~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii 81 (141)
T 3cu5_A 4 RILIVDDEKLTRDGLIANINWKALS-FDQIDQ-ADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVI 81 (141)
T ss_dssp EEEEECSCHHHHHHHHHHCCGGGSC-CSEEEE-ESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHccCC-cEEeee-cccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Confidence 5677775322344555554422221 223312 223344444443 36888 454 35556777777664 578988
Q ss_pred ecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHh
Q psy15363 87 TLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRL 125 (130)
Q Consensus 87 ~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l 125 (130)
.+.+..-...... .+ ..|..+++.. +.+++.+...+.
T Consensus 82 ~ls~~~~~~~~~~-~~-~~ga~~~l~KP~~~~~L~~~i~~~ 120 (141)
T 3cu5_A 82 FMSGYSDKEYLKA-AI-KFRAIRYVEKPIDPSEIMDALKQS 120 (141)
T ss_dssp EECCSTTTCCC--------CCCEEECSSCCHHHHHHHHHHH
T ss_pred EEeCCCcHHHHHH-HH-hCCccEEEeCCCCHHHHHHHHHHH
Confidence 8765432211111 11 3477776653 666666555443
No 449
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=22.11 E-value=2e+02 Score=20.43 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=34.0
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC--------------HHHHHHhhccccEEEcCCCC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--------------KEEHVRRGQLADVCLDTPLC 69 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~--------------~~~~~~~~~~~Dv~l~~~~~ 69 (130)
.+ +++++|.++..+..+.. +.+.|. ++|.+..+.+ .++.......+|+.+.+.|.
T Consensus 108 ~~-~vliiGaGg~a~ai~~~-L~~~G~--~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~ 176 (253)
T 3u62_A 108 KE-PVVVVGAGGAARAVIYA-LLQMGV--KDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSV 176 (253)
T ss_dssp CS-SEEEECCSHHHHHHHHH-HHHTTC--CCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSST
T ss_pred CC-eEEEECcHHHHHHHHHH-HHHcCC--CEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCC
Confidence 45 88899975545544444 455786 5777776543 12233456679999876543
No 450
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=22.06 E-value=2.2e+02 Score=20.34 Aligned_cols=63 Identities=13% Similarity=-0.027 Sum_probs=39.8
Q ss_pred EEEEee-cCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHh
Q psy15363 14 ILWLLK-FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLW 80 (130)
Q Consensus 14 ~l~i~g-~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla 80 (130)
++.|+| . |..-..+...+.+.|. +|.+.++-+..+.......+|+.+-..|...-..+++.+.
T Consensus 23 ~I~iIGg~-G~mG~~la~~l~~~G~---~V~~~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~ 86 (298)
T 2pv7_A 23 KIVIVGGY-GKLGGLFARYLRASGY---PISILDREDWAVAESILANADVVIVSVPINLTLETIERLK 86 (298)
T ss_dssp CEEEETTT-SHHHHHHHHHHHTTTC---CEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHG
T ss_pred EEEEEcCC-CHHHHHHHHHHHhCCC---eEEEEECCcccCHHHHhcCCCEEEEeCCHHHHHHHHHHHH
Confidence 678898 6 3433455666666674 5777776655455566788999976665444334455543
No 451
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=22.00 E-value=2.7e+02 Score=21.30 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=61.7
Q ss_pred cEEEEeecCcccHHHH-HHHHHHcCCCCCC-EEEecCCCHHHHHHhhcc------ccEEE-cCCC-CCCch----HHHHH
Q psy15363 13 SILWLLKFPAVGEANI-QATAQALGLDQHR-ILFSNVAAKEEHVRRGQL------ADVCL-DTPL-CNGHT----TSMDV 78 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l-~~~~~~~g~~~~r-v~f~g~~~~~~~~~~~~~------~Dv~l-~~~~-~~~g~----~~lEA 78 (130)
-++.+++. +.+-..+ ...+..+|..+.+ +.+.|..+.+++...+.. .|..+ ..++ ...+. .+.+|
T Consensus 248 g~I~ii~N-g~Gl~~~t~D~i~~~G~~~aN~lD~gG~a~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA~~i~~a 326 (397)
T 3ufx_B 248 GNIGIIGN-GAGLVMYTLDLVNRVGGKPANFLDIGGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRA 326 (397)
T ss_dssp SSEEEEES-SHHHHHHHHHHHHHTTCCBSEEEECCSCCCHHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred CcEEEEec-CccHHHHHHHHHHHcCCCcCCcEecCCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 34556663 3333333 3577888876554 666677777666554443 45543 2221 11122 34555
Q ss_pred Hhc---CCcEEec-CCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHHhcc
Q psy15363 79 LWT---GTPVVTL-PGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGT 127 (130)
Q Consensus 79 la~---G~PvV~~-~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~l~~ 127 (130)
..- ++|||+. .|.+ ...+..+++..|+ ...++.++=++.++++++
T Consensus 327 ~~~~~~~kPvvv~~~G~~--~~~~~~~l~~~gi--p~~~~~e~Aa~~~~~l~~ 375 (397)
T 3ufx_B 327 LEEGLLTKPVVMRVAGTA--EEEAKKLLEGKPV--YMYPTSIEAAKVTVAMKG 375 (397)
T ss_dssp HTTTCCCSCEEEEEEEEC--HHHHHHHTTTSSE--EECSSHHHHHHHHHHSCC
T ss_pred HHhhCCCCcEEEEccCCC--HHHHHHHHHhCCC--cccCCHHHHHHHHHHHHH
Confidence 543 7998876 3432 2233445655552 346899999999988875
No 452
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=21.96 E-value=68 Score=17.78 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEe---cCCCHHHHHHhh
Q psy15363 25 EANIQATAQALGLDQHRILFS---NVAAKEEHVRRG 57 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~---g~~~~~~~~~~~ 57 (130)
.+..+++++++|++.+.|.=. |++..+|+..+.
T Consensus 11 SPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~ 46 (58)
T 3rnm_E 11 TPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYL 46 (58)
T ss_dssp CHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHH
Confidence 357889999999998888765 455667766544
No 453
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=21.89 E-value=50 Score=24.98 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.4
Q ss_pred chHHHHHHhcCCcEEecCCC
Q psy15363 72 HTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 72 g~~~lEAla~G~PvV~~~g~ 91 (130)
+--+.+|++.|.|||++.+.
T Consensus 22 s~EV~~Al~~g~PVVALEST 41 (316)
T 4ex8_A 22 SDEIATALAERRPVVALESS 41 (316)
T ss_dssp CHHHHHHHHTTCCEEEECST
T ss_pred CHHHHHHHHcCCCEEEEeee
Confidence 34589999999999988653
No 454
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=21.88 E-value=49 Score=21.60 Aligned_cols=24 Identities=4% Similarity=0.068 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 25 EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.+..+++++++|+..++|+++...
T Consensus 129 ~e~F~~~~~~~Gl~~enI~~~~~~ 152 (157)
T 3fiq_A 129 KQELRKLAEEYNIPNENTQHLVPT 152 (157)
T ss_dssp HHHHHHHHHHTTCCGGGCEECGGG
T ss_pred HHHHHHHHHHcCCCHHHEEeCCCC
Confidence 456778899999998899988754
No 455
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=21.87 E-value=1.2e+02 Score=23.43 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCCC--HHH----HHHhhccccEEEcCCCCCCc--hHHHHHHh----------------
Q psy15363 25 EANIQATAQALGLDQHRILFSNVAA--KEE----HVRRGQLADVCLDTPLCNGH--TTSMDVLW---------------- 80 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~~--~~~----~~~~~~~~Dv~l~~~~~~~g--~~~lEAla---------------- 80 (130)
...|.+++++.|.. +...+.++ .++ +......+|+.+.|-.-+-| -.+-|++.
T Consensus 209 ~~~L~~~l~~~G~~---v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~g~~D~t~~al~~~G~~~f~~va~~PG~ 285 (402)
T 1uz5_A 209 GRALCDAINELGGE---GIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGK 285 (402)
T ss_dssp HHHHHHHHHHHTSE---EEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-----CHHHHHHHHHSEEEEECBSEESCT
T ss_pred HHHHHHHHHhCCCe---EEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCCCCCcccHHHHHHhhCCEEEeeEeecCCC
Confidence 35678888888864 44444443 233 33344458888854322111 12333332
Q ss_pred -------cCCcEEecCCCchhhhhHH
Q psy15363 81 -------TGTPVVTLPGETLASRVAA 99 (130)
Q Consensus 81 -------~G~PvV~~~g~~~~~r~~~ 99 (130)
-|+||+.++|.......+.
T Consensus 286 p~~~g~~~~~~v~~LPG~P~sa~~~~ 311 (402)
T 1uz5_A 286 PTIIGVIKGKPVFGLPGYPTSCLTNF 311 (402)
T ss_dssp TCEEEEETTEEEEEECSSHHHHHHHH
T ss_pred CEEEEEECCEEEEECCCCHHHHHHHH
Confidence 2578888888776665543
No 456
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=21.83 E-value=2.2e+02 Score=20.86 Aligned_cols=82 Identities=18% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHH-----------------HhhccccEEEcCCC
Q psy15363 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHV-----------------RRGQLADVCLDTPL 68 (130)
Q Consensus 6 il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~-----------------~~~~~~Dv~l~~~~ 68 (130)
.|.+-...++.++|.+...+..++.+.+..++ ++|...++-..+++. ..++.+||.+..-+
T Consensus 115 ~La~~~~~~v~iIGaG~~a~~~~~al~~~~~~--~~V~v~~r~~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~ 192 (313)
T 3hdj_A 115 ALARPRSSVLGLFGAGTQGAEHAAQLSARFAL--EAILVHDPYASPEILERIGRRCGVPARMAAPADIAAQADIVVTATR 192 (313)
T ss_dssp HHSCTTCCEEEEECCSHHHHHHHHHHHHHSCC--CEEEEECTTCCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCC
T ss_pred hhccCCCcEEEEECccHHHHHHHHHHHHhCCC--cEEEEECCcHHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccC
Confidence 34333346788888644455566666555554 577766554222222 23456899865433
Q ss_pred CCCchHHHHHHhcCCcEEecC
Q psy15363 69 CNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 69 ~~~g~~~lEAla~G~PvV~~~ 89 (130)
-.......+.+.-|.=|+...
T Consensus 193 s~~pvl~~~~l~~G~~V~~vG 213 (313)
T 3hdj_A 193 STTPLFAGQALRAGAFVGAIG 213 (313)
T ss_dssp CSSCSSCGGGCCTTCEEEECC
T ss_pred CCCcccCHHHcCCCcEEEECC
Confidence 222221224455566566543
No 457
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=21.80 E-value=2.1e+02 Score=19.98 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc-ccEE-EcCCCC--CCchHHHHHHhc---CCcEEecCCCch
Q psy15363 27 NIQATAQALGLDQHRILFSNVAAKEEHVRRGQL-ADVC-LDTPLC--NGHTTSMDVLWT---GTPVVTLPGETL 93 (130)
Q Consensus 27 ~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~-~Dv~-l~~~~~--~~g~~~lEAla~---G~PvV~~~g~~~ 93 (130)
.+.+.++++|.. .+.|-.+.+|....+.. +|++ + ||- .+|...+.++.. ++|++...|-+.
T Consensus 101 ~v~~~ar~~g~~----~i~Gv~t~~e~~~A~~~Gad~vk~--Fpa~~~gG~~~lk~l~~~~~~ipvvaiGGI~~ 168 (224)
T 1vhc_A 101 KIVKLCQDLNFP----ITPGVNNPMAIEIALEMGISAVKF--FPAEASGGVKMIKALLGPYAQLQIMPTGGIGL 168 (224)
T ss_dssp HHHHHHHHTTCC----EECEECSHHHHHHHHHTTCCEEEE--TTTTTTTHHHHHHHHHTTTTTCEEEEBSSCCT
T ss_pred HHHHHHHHhCCC----EEeccCCHHHHHHHHHCCCCEEEE--eeCccccCHHHHHHHHhhCCCCeEEEECCcCH
Confidence 334455666653 23465556666665544 8877 6 552 246777777653 689998877544
No 458
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=21.77 E-value=1.8e+02 Score=22.88 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCCCCc-----hHHHHHHhcCCcEEecCCCc--hhhhhHHHHHHhcCCCC
Q psy15363 67 PLCNGH-----TTSMDVLWTGTPVVTLPGET--LASRVAASQLATLGCPE 109 (130)
Q Consensus 67 ~~~~~g-----~~~lEAla~G~PvV~~~g~~--~~~r~~~~~l~~~g~~~ 109 (130)
.||+++ ..+.=|+++|-+||..+++. ..+..-+.+++..|+|+
T Consensus 165 ~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~ 214 (501)
T 1uxt_A 165 TPFNYPLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPP 214 (501)
T ss_dssp CCTTSTTHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTTCCT
T ss_pred CCCccHHHHHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHHhCCCc
Confidence 355554 44679999999999987753 44556677888889985
No 459
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=21.77 E-value=2.1e+02 Score=19.88 Aligned_cols=109 Identities=8% Similarity=-0.001 Sum_probs=62.5
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc---ccEE-EcC-CCCCCchHHHHHHhc----
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL---ADVC-LDT-PLCNGHTTSMDVLWT---- 81 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~---~Dv~-l~~-~~~~~g~~~lEAla~---- 81 (130)
...+++++-+....+..++..+++.|. .|... .+.++....+.. .|++ +|- .|...|..+++.+-.
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~---~v~~a--~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~ 197 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLL---QVHEA--SHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSK 197 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTC---EEEEE--SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCc---EEEEe--CCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCC
Confidence 457888887643345566666666553 33322 334555455532 4777 554 466678888877653
Q ss_pred -CCcEEecCCCchhhhhHHHHHHhcCCCCceec--CHHHHHHHHHHhc
Q psy15363 82 -GTPVVTLPGETLASRVAASQLATLGCPELIAR--THKEYQDIAIRLG 126 (130)
Q Consensus 82 -G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~--~~~~y~~~a~~l~ 126 (130)
.+|||...+........ -.-..|..+++.. +.+++..+..+++
T Consensus 198 ~~~~ii~~s~~~~~~~~~--~a~~~Ga~~yl~KP~~~~~L~~~i~~~l 243 (259)
T 3luf_A 198 QQLAIIGISVSDKRGLSA--RYLKQGANDFLNQPFEPEELQCRVSHNL 243 (259)
T ss_dssp TTSEEEEEECSSSSSHHH--HHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCCeEEEEEccCCHHHHH--HHHhcChhheEcCCCCHHHHHHHHHHHH
Confidence 57888665432222111 1224588887763 6777777666543
No 460
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=21.76 E-value=59 Score=21.46 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=49.8
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCC--CCEEEe---c-CCCH-HHHHHhhccccEEEcC-CCCC-C-chHHHHHHhc
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQ--HRILFS---N-VAAK-EEHVRRGQLADVCLDT-PLCN-G-HTTSMDVLWT 81 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~--~rv~f~---g-~~~~-~~~~~~~~~~Dv~l~~-~~~~-~-g~~~lEAla~ 81 (130)
+.++.++.. .....++..++.+|+.. +.+... + ..|. +-+..+++...+-... .-.+ + .+-+.-|-.+
T Consensus 122 g~~~~i~sn--~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~~Di~~a~~a 199 (240)
T 3qnm_A 122 QYNLYILSN--GFRELQSRKMRSAGVDRYFKKIILSEDLGVLKPRPEIFHFALSATQSELRESLMIGDSWEADITGAHGV 199 (240)
T ss_dssp TSEEEEEEC--SCHHHHHHHHHHHTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHHTTCCGGGEEEEESCTTTTHHHHHHT
T ss_pred CCeEEEEeC--CchHHHHHHHHHcChHhhceeEEEeccCCCCCCCHHHHHHHHHHcCCCcccEEEECCCchHhHHHHHHc
Confidence 467777763 23455666777777751 333332 1 3343 3333333333211000 0011 2 1446677889
Q ss_pred CCcEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHH
Q psy15363 82 GTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDI 121 (130)
Q Consensus 82 G~PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~ 121 (130)
|.+++........ .....++++.++.+|...+
T Consensus 200 G~~~~~~~~~~~~--------~~~~~~d~vi~sl~e~~~~ 231 (240)
T 3qnm_A 200 GMHQAFYNVTERT--------VFPFQPTYHIHSLKELMNL 231 (240)
T ss_dssp TCEEEEECCSCCC--------CCSSCCSEEESSTHHHHHH
T ss_pred CCeEEEEcCCCCC--------CcCCCCceEECCHHHHHHH
Confidence 9998876543210 0113356788888777654
No 461
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=21.65 E-value=1.8e+02 Score=19.15 Aligned_cols=61 Identities=10% Similarity=-0.038 Sum_probs=35.0
Q ss_pred HHHHHHHHHcC---CCCCCEEEecCCCHHHHHHhhccccEEEcCCCCCCchHHHHHHhcCCcEEecCC
Q psy15363 26 ANIQATAQALG---LDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 26 ~~l~~~~~~~g---~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~~~~~g~~~lEAla~G~PvV~~~g 90 (130)
..+++.++++| ++++++.+.|--.. ++. ..+.+++.+-..| .....-.|-..|-|++....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~vGDs~~-D~~-~~~~ag~~~~~~~--~~~l~~~a~~~~w~~~~~~~ 225 (232)
T 3fvv_A 162 VRVNQWLAGMGLALGDFAESYFYSDSVN-DVP-LLEAVTRPIAANP--SPGLREIAQARGWQVIDLFD 225 (232)
T ss_dssp HHHHHHHHHTTCCGGGSSEEEEEECCGG-GHH-HHHHSSEEEEESC--CHHHHHHHHHHTCEEECCC-
T ss_pred HHHHHHHHHcCCCcCchhheEEEeCCHh-hHH-HHHhCCCeEEECc--CHHHHHHHHHCCCcEeehhh
Confidence 34667778888 88788888887653 332 3345554321111 12334455567888876643
No 462
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.65 E-value=2e+02 Score=19.71 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCCCEEEecCCCHH---HHHHhh--ccccEEEc-CCCCCCc-hHHHHHHhcCCcEEecCC
Q psy15363 26 ANIQATAQALGLDQHRILFSNVAAKE---EHVRRG--QLADVCLD-TPLCNGH-TTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~~~~---~~~~~~--~~~Dv~l~-~~~~~~g-~~~lEAla~G~PvV~~~g 90 (130)
..+++.++++|.. =+.+...-+.+ +....+ +.+|-++- +.....- ..+-++...|+|||+...
T Consensus 28 ~gi~~~a~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 28 NAFKAEAKANKYE--ALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHTTCE--EEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHcCCE--EEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecC
Confidence 4567778888873 23333332322 222222 34787753 3322222 334455578999999854
No 463
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=21.59 E-value=1.6e+02 Score=22.63 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=36.8
Q ss_pred HHHHHHhhcc--ccEEEcCCCCCCch--HHHHHH-hcCCcEEecCCCch---hhh-hHHHHHHhcCCCC---ceecCHHH
Q psy15363 50 KEEHVRRGQL--ADVCLDTPLCNGHT--TSMDVL-WTGTPVVTLPGETL---ASR-VAASQLATLGCPE---LIARTHKE 117 (130)
Q Consensus 50 ~~~~~~~~~~--~Dv~l~~~~~~~g~--~~lEAl-a~G~PvV~~~g~~~---~~r-~~~~~l~~~g~~~---~va~~~~~ 117 (130)
.+.+..+.+. .|+.+. .++. +. .+.+.+ ..|+|++..+.+.. .++ ....+++..|++- .+.++.++
T Consensus 72 ~~~l~~~a~~~~id~vv~-g~E~-~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~e 149 (442)
T 3lp8_A 72 TIEVIQVCKKEKIELVVI-GPET-PLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNS 149 (442)
T ss_dssp HHHHHHHHHHTTCCEEEE-CSHH-HHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHH
T ss_pred HHHHHHHHHHhCCCEEEE-CCcH-HHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCHHH
Confidence 3455555444 677763 2221 11 123322 47999984332211 122 2456677778863 34567766
Q ss_pred HHHHHHH
Q psy15363 118 YQDIAIR 124 (130)
Q Consensus 118 y~~~a~~ 124 (130)
..+.+.+
T Consensus 150 a~~~~~~ 156 (442)
T 3lp8_A 150 AYKFIDK 156 (442)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555444
No 464
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=21.55 E-value=2.8e+02 Score=21.28 Aligned_cols=75 Identities=20% Similarity=0.146 Sum_probs=44.0
Q ss_pred CCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC--------------------------------------HH
Q psy15363 10 VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA--------------------------------------KE 51 (130)
Q Consensus 10 ~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~--------------------------------------~~ 51 (130)
+|+.+++++|. |.--....+.++.+|. +|+.....+ .+
T Consensus 182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa---~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~ 257 (381)
T 3p2y_A 182 VKPASALVLGV-GVAGLQALATAKRLGA---KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQ 257 (381)
T ss_dssp ECCCEEEEESC-SHHHHHHHHHHHHHTC---EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHH
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence 37788999996 4433444556666774 354443322 12
Q ss_pred HHHHhhccccEEEcCC--CCC-----CchHHHHHHhcCCcEEec
Q psy15363 52 EHVRRGQLADVCLDTP--LCN-----GHTTSMDVLWTGTPVVTL 88 (130)
Q Consensus 52 ~~~~~~~~~Dv~l~~~--~~~-----~g~~~lEAla~G~PvV~~ 88 (130)
.+...++.+||++.+. |-. ..-..++.|--|.-+|-.
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence 3456778899998764 211 233566666667666644
No 465
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=21.49 E-value=98 Score=23.06 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=25.7
Q ss_pred HHHHhhCCCcEEEEeecCcccHHHHHHH-HHHcCCCCCCEEEec
Q psy15363 4 IFVLKAVPNSILWLLKFPAVGEANIQAT-AQALGLDQHRILFSN 46 (130)
Q Consensus 4 ~~il~~~P~a~l~i~g~~~~~~~~l~~~-~~~~g~~~~rv~f~g 46 (130)
..|.+..|++.+++++. +.+ .+... .+..|++++||+=++
T Consensus 109 ~~i~~~~p~a~iivvtN-Pvd--~~t~~~~k~sg~p~~rviG~~ 149 (324)
T 3gvi_A 109 AGIKKYAPEAFVICITN-PLD--AMVWALQKFSGLPAHKVVGMA 149 (324)
T ss_dssp HHHHHHCTTCEEEECCS-SHH--HHHHHHHHHHCCCGGGEEECC
T ss_pred HHHHHHCCCeEEEecCC-CcH--HHHHHHHHhcCCCHHHEEeec
Confidence 45667789999999984 222 22222 233478777888777
No 466
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=21.45 E-value=2.3e+02 Score=20.45 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=21.9
Q ss_pred CCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCC
Q psy15363 11 PNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAA 49 (130)
Q Consensus 11 P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~ 49 (130)
.+.+.+++|.+|..+... ..+.+.|+ .+|.+..+-+
T Consensus 126 ~~k~vlVlGaGG~g~aia-~~L~~~G~--~~v~i~~R~~ 161 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVA-YALVTHGV--QKLQVADLDT 161 (283)
T ss_dssp CCSEEEEECCSHHHHHHH-HHHHHTTC--SEEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHH-HHHHHCCC--CEEEEEECCH
Confidence 466788888654444443 34455676 4777776653
No 467
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=21.40 E-value=49 Score=22.72 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=12.1
Q ss_pred hHHHHHHhcCCcEEecCC
Q psy15363 73 TTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 73 ~~~lEAla~G~PvV~~~g 90 (130)
.-+.-|.++|.++|....
T Consensus 177 ~di~aA~~aG~~~I~V~~ 194 (243)
T 4g9b_A 177 AGIDAINASGMRSVGIGA 194 (243)
T ss_dssp HHHHHHHHHTCEEEEEST
T ss_pred HHHHHHHHcCCEEEEECC
Confidence 345667788888876643
No 468
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=21.39 E-value=2.1e+02 Score=19.74 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCCCCEEEecCC---CHHH---HHH-hh-ccccEEEcC-CCCCC-chHHHHHHhcCCcEEecCC
Q psy15363 26 ANIQATAQALGLDQHRILFSNVA---AKEE---HVR-RG-QLADVCLDT-PLCNG-HTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f~g~~---~~~~---~~~-~~-~~~Dv~l~~-~~~~~-g~~~lEAla~G~PvV~~~g 90 (130)
..+++.++++|.. +.+...- +.+. ... +. +.+|-.+-. ..... ...+-++. .|+|||+...
T Consensus 25 ~g~~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~ 95 (304)
T 3o1i_D 25 YGMVSEAEKQGVN---LRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSWV-GNTPVFATVN 95 (304)
T ss_dssp HHHHHHHHHHTCE---EEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSS
T ss_pred HHHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecC
Confidence 4566778888873 4443322 3221 221 11 357877533 32221 23344455 9999999854
No 469
>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}
Probab=21.29 E-value=1.6e+02 Score=19.59 Aligned_cols=106 Identities=16% Similarity=0.065 Sum_probs=48.6
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEec----CCCHHH-HHHhhccccEEEcCC---CCC-CchHHHHHHhcCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSN----VAAKEE-HVRRGQLADVCLDTP---LCN-GHTTSMDVLWTGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g----~~~~~~-~~~~~~~~Dv~l~~~---~~~-~g~~~lEAla~G~ 83 (130)
.++.++.. .....++..++.+|+.-+.+.... ..|..+ +..++....+ ++. -.+ +.+-+.-|-++|.
T Consensus 136 ~~~~i~s~--~~~~~~~~~l~~~g~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi--~~~~~~~iGD~~~Di~~a~~aG~ 211 (254)
T 3umc_A 136 YWLAALSN--GNTALMLDVARHAGLPWDMLLCADLFGHYKPDPQVYLGACRLLDL--PPQEVMLCAAHNYDLKAARALGL 211 (254)
T ss_dssp SEEEECCS--SCHHHHHHHHHHHTCCCSEECCHHHHTCCTTSHHHHHHHHHHHTC--CGGGEEEEESCHHHHHHHHHTTC
T ss_pred CeEEEEeC--CCHHHHHHHHHHcCCCcceEEeecccccCCCCHHHHHHHHHHcCC--ChHHEEEEcCchHhHHHHHHCCC
Confidence 55655542 345566777778887523332221 122222 2222222221 111 011 2345666778899
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHH
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIA 122 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a 122 (130)
+++......-.+.....-+.....++++.++..+..+..
T Consensus 212 ~~~~~~~~~~~g~~~~~~l~~~~~ad~v~~~l~el~~~l 250 (254)
T 3umc_A 212 KTAFIARPLEYGPGQSQDLAAEQDWDLIASDLLDLHRQL 250 (254)
T ss_dssp EEEEECCTTTTCTTCCSSSSCSSCCSEEESSHHHHHHHH
T ss_pred eEEEEecCCccCCCCCcccccCCCCcEEECCHHHHHHHh
Confidence 988765211000000000000134567888988887654
No 470
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens}
Probab=21.14 E-value=88 Score=19.80 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=23.5
Q ss_pred EEEEeecCcc-c---HHHHHHHHHHcCCCCCCEEEecC
Q psy15363 14 ILWLLKFPAV-G---EANIQATAQALGLDQHRILFSNV 47 (130)
Q Consensus 14 ~l~i~g~~~~-~---~~~l~~~~~~~g~~~~rv~f~g~ 47 (130)
.++|++.... . .+.+++.++++|++.++++++..
T Consensus 119 ~~~llsR~~~~~~~~~~~~~~~~~~~G~~~~~i~~~~q 156 (161)
T 2xst_A 119 MVQLYSRTQDVSPQALKSFQDFYPTLGLPKDMMVMLPQ 156 (161)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHGGGGTCCGGGEEECCC
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHHcCCCHHHEEECCC
Confidence 4566664322 2 45677788899999888998765
No 471
>2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium}
Probab=21.07 E-value=73 Score=22.28 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=31.5
Q ss_pred HHHHHhhCCCcEEEEeecCc---c-------c-------H-HHHHHHHHHcCCCCCCE-EEecCCC
Q psy15363 3 DIFVLKAVPNSILWLLKFPA---V-------G-------E-ANIQATAQALGLDQHRI-LFSNVAA 49 (130)
Q Consensus 3 w~~il~~~P~a~l~i~g~~~---~-------~-------~-~~l~~~~~~~g~~~~rv-~f~g~~~ 49 (130)
++.+++.+|+ .+.|.|... . . + ..+++++.+.|++++|+ ...|+-.
T Consensus 93 ia~~L~~~p~-~I~I~GHTD~~g~~~~~~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~~G~G~ 157 (210)
T 2zov_A 93 IAPVLNGIPN-RISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAA 157 (210)
T ss_dssp HHHHHTTSCC-CEEEEEEEECSCCCSSCSSCCHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred HHHHHHcCCC-eEEEEEEeCCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCCHHHeeeEEEecc
Confidence 5678889998 788888421 1 1 1 13556667789998999 6777653
No 472
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=21.00 E-value=84 Score=23.31 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=33.3
Q ss_pred CCCcEEEEeecCcc---cHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhc
Q psy15363 10 VPNSILWLLKFPAV---GEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ 58 (130)
Q Consensus 10 ~P~a~l~i~g~~~~---~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~ 58 (130)
.|..-.+++|+.+. +...-++.+++.|+....+.|....+.+|+...+.
T Consensus 35 ~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~ 86 (286)
T 4a5o_A 35 VPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALID 86 (286)
T ss_dssp CCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHH
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 38777888886422 22344567899999855667767778888766653
No 473
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=20.93 E-value=1.1e+02 Score=19.01 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHcCC-CCCCEEEecC
Q psy15363 23 VGEANIQATAQALGL-DQHRILFSNV 47 (130)
Q Consensus 23 ~~~~~l~~~~~~~g~-~~~rv~f~g~ 47 (130)
+.++.+.+++.+.|+ ..+.|.+.|+
T Consensus 76 D~r~~v~~~L~~~G~~~~~~I~vhg~ 101 (101)
T 2xzm_F 76 DHRNQIQQFLSEEGIAAVDNITIHGI 101 (101)
T ss_dssp CCHHHHHHHHHHHSSSCTTTEEECCC
T ss_pred cHHHHHHHHHHHcCCCCHHHEEEcCC
Confidence 457788888777787 5567877663
No 474
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=20.91 E-value=54 Score=25.03 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=17.5
Q ss_pred CchHHHHHHhcCCcEEecCCC
Q psy15363 71 GHTTSMDVLWTGTPVVTLPGE 91 (130)
Q Consensus 71 ~g~~~lEAla~G~PvV~~~g~ 91 (130)
..--+.+|++.|.|||++.+.
T Consensus 36 is~EV~~Al~~~~PVVALEST 56 (335)
T 4gim_A 36 ISPEVQDALKNKKPVVALEST 56 (335)
T ss_dssp ECHHHHHHHHTTCCEEEECSH
T ss_pred cCHHHHHHHHcCCCEEEEehh
Confidence 345699999999999999753
No 475
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=20.75 E-value=21 Score=26.32 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHhhC--CCcEEEEeecCcc---c---------H-HHHHHHHHHcCCCCCCEEEecCC
Q psy15363 3 DIFVLKAV--PNSILWLLKFPAV---G---------E-ANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 3 w~~il~~~--P~a~l~i~g~~~~---~---------~-~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
+++++++. |+.++.|.|+... . | +.+++++.+.|++++||...|.-
T Consensus 241 ~~~~l~~~~~~~~~i~i~Ghtd~~g~~~~N~~LS~~RA~~V~~~L~~~gv~~~ri~~~g~G 301 (346)
T 3nb3_A 241 LYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMG 301 (346)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHhCCCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHEEEEEec
Confidence 34566666 6788888886311 0 0 24555566668877777766643
No 476
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=20.69 E-value=1.7e+02 Score=18.38 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=41.1
Q ss_pred CcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcCC-CCCCchHHHHHHhcCCcEEecC
Q psy15363 12 NSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTP-LCNGHTTSMDVLWTGTPVVTLP 89 (130)
Q Consensus 12 ~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~~-~~~~g~~~lEAla~G~PvV~~~ 89 (130)
+-.++|.|.-...++.++++++++|-. +.+.++. ..|.++..- ....|.-+-.|...|+|||.-.
T Consensus 13 G~~~ViTG~l~~~R~e~k~~ie~~Ggk-----v~~sVsk--------kT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 13 NMKILTLGKLSRNKDEVKAMIEKLGGK-----LTGTANK--------ASLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp SCEEEECSCCSSCHHHHHHHHHHTTCE-----EESCSTT--------CSEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred CCEEEEEecCCCCHHHHHHHHHHCCCE-----EcCcccc--------CccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 556777775323578888899988842 4566642 234443220 0124677889999999999743
No 477
>3kq0_A Alpha-1-acid glycoprotein 1; plasma protein, polymorphism, acute phase protein, secreted, pyrrolidone carboxylic acid, lipocalin; 1.80A {Homo sapiens} PDB: 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=20.60 E-value=83 Score=21.01 Aligned_cols=35 Identities=6% Similarity=0.054 Sum_probs=25.6
Q ss_pred EEEEeecCc----ccHHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 14 ILWLLKFPA----VGEANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 14 ~l~i~g~~~----~~~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.|.+.+..+ ...+..+++++.+|++.+.|+|+...
T Consensus 123 ~l~LysRtp~v~~e~le~F~~~a~~~G~~~~~ii~~~~~ 161 (192)
T 3kq0_A 123 GLSVYADKPETTKEQLGEFYEALDCLRIPKSDVVYTDWK 161 (192)
T ss_dssp EEEEEESSSCCCTTTTHHHHHHHHHHTCCGGGCEECCGG
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCCHHHEEEccCC
Confidence 466777532 13578889999999998899987643
No 478
>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}
Probab=20.57 E-value=1.8e+02 Score=19.07 Aligned_cols=108 Identities=14% Similarity=0.058 Sum_probs=50.1
Q ss_pred cEEEEeecCcccHHHHHHHHHHcCCCCCCEEEec----CCCH-HHHHHhhccccEEEcCC---CCC-CchHHHHHHhcCC
Q psy15363 13 SILWLLKFPAVGEANIQATAQALGLDQHRILFSN----VAAK-EEHVRRGQLADVCLDTP---LCN-GHTTSMDVLWTGT 83 (130)
Q Consensus 13 a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g----~~~~-~~~~~~~~~~Dv~l~~~---~~~-~g~~~lEAla~G~ 83 (130)
.++.++.. .....++..++.+|+.-+.+.... ..|. .-+..++....+ ++. -.+ +.+-+.-|-.+|.
T Consensus 132 ~~~~i~t~--~~~~~~~~~l~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi--~~~~~~~iGD~~~Di~~a~~aG~ 207 (254)
T 3umg_A 132 YIIGPLSN--GNTSLLLDMAKNAGIPWDVIIGSDINRKYKPDPQAYLRTAQVLGL--HPGEVMLAAAHNGDLEAAHATGL 207 (254)
T ss_dssp SEEEECSS--SCHHHHHHHHHHHTCCCSCCCCHHHHTCCTTSHHHHHHHHHHTTC--CGGGEEEEESCHHHHHHHHHTTC
T ss_pred CeEEEEeC--CCHHHHHHHHHhCCCCeeEEEEcCcCCCCCCCHHHHHHHHHHcCC--ChHHEEEEeCChHhHHHHHHCCC
Confidence 45656542 344566677777787423333221 1222 222222222221 110 011 2344666778899
Q ss_pred cEEecCCCchhhhhHHHHHHhcCCCCceecCHHHHHHHHHH
Q psy15363 84 PVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIR 124 (130)
Q Consensus 84 PvV~~~g~~~~~r~~~~~l~~~g~~~~va~~~~~y~~~a~~ 124 (130)
+++......-.+.....-+.....++++.++..+..+....
T Consensus 208 ~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~~~~el~~~l~~ 248 (254)
T 3umg_A 208 ATAFILRPVEHGPHQTDDLAPTGSWDISATDITDLAAQLRA 248 (254)
T ss_dssp EEEEECCTTTTCTTCCSCSSCSSCCSEEESSHHHHHHHHHH
T ss_pred EEEEEecCCcCCCCccccccccCCCceEECCHHHHHHHhcC
Confidence 98876422100000000000013456888999988877654
No 479
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=20.57 E-value=1.1e+02 Score=22.67 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=34.4
Q ss_pred CCcEEEEeecCccc----HHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhcc
Q psy15363 11 PNSILWLLKFPAVG----EANIQATAQALGLDQHRILFSNVAAKEEHVRRGQL 59 (130)
Q Consensus 11 P~a~l~i~g~~~~~----~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~ 59 (130)
|..-.+++|+. +. -..-++.+++.|+....+.|....+.+|+...+..
T Consensus 34 P~LavilvG~d-paS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 85 (288)
T 1b0a_A 34 PGLAVVLVGSN-PASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDT 85 (288)
T ss_dssp CEEEEEEESCC-HHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHH
T ss_pred ceEEEEEeCCC-hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 88888888864 33 23445678899998667777777888888766643
No 480
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=20.47 E-value=1e+02 Score=20.51 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=19.3
Q ss_pred HHhhCCCcEEEEeecCcccHHHHHHHHH-HcC
Q psy15363 6 VLKAVPNSILWLLKFPAVGEANIQATAQ-ALG 36 (130)
Q Consensus 6 il~~~P~a~l~i~g~~~~~~~~l~~~~~-~~g 36 (130)
.++..+.-.++++|.+|.++..+-+.+. .+|
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3445566778889988888888777654 444
No 481
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=20.46 E-value=77 Score=18.96 Aligned_cols=16 Identities=13% Similarity=-0.047 Sum_probs=10.5
Q ss_pred HHHHHHhcCCcEEecC
Q psy15363 74 TSMDVLWTGTPVVTLP 89 (130)
Q Consensus 74 ~~lEAla~G~PvV~~~ 89 (130)
-+.-|..+|...|...
T Consensus 103 di~~a~~~G~~~i~~~ 118 (137)
T 2pr7_A 103 NVRGAVEAGLVGVYYQ 118 (137)
T ss_dssp HHHHHHHHTCEEEECS
T ss_pred HHHHHHHCCCEEEEeC
Confidence 3555677788777654
No 482
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.46 E-value=2.2e+02 Score=19.69 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCCCCEEE--ecCCCHHHHHHhh-----ccccEEEc-CCCCCC-chHHHHHHhcCCcEEecCC
Q psy15363 26 ANIQATAQALGLDQHRILF--SNVAAKEEHVRRG-----QLADVCLD-TPLCNG-HTTSMDVLWTGTPVVTLPG 90 (130)
Q Consensus 26 ~~l~~~~~~~g~~~~rv~f--~g~~~~~~~~~~~-----~~~Dv~l~-~~~~~~-g~~~lEAla~G~PvV~~~g 90 (130)
..+++.++++|.. +.+ ...-+.+.....+ +.+|-++- +..... ...+-++...|+|||+...
T Consensus 24 ~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (305)
T 3g1w_A 24 KGFEDAAQALNVT---VEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDS 94 (305)
T ss_dssp HHHHHHHHHHTCE---EEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHcCCE---EEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECC
Confidence 4567778888863 444 2333332222222 34887653 332222 2345556678999999864
No 483
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=20.38 E-value=1.2e+02 Score=18.76 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHcCCCCCCEEEe
Q psy15363 24 GEANIQATAQALGLDQHRILFS 45 (130)
Q Consensus 24 ~~~~l~~~~~~~g~~~~rv~f~ 45 (130)
.+.-+..++++.|++.++|+|+
T Consensus 43 l~KL~~aYc~r~gv~~~sirFl 64 (95)
T 2l76_A 43 LQSVVDHMATHLGVSPSRILLL 64 (95)
T ss_dssp THHHHHHHHHHHTSCGGGEEEE
T ss_pred HHHHHHHHHhhcCCChhhEEEE
Confidence 4556677899999999998886
No 484
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A*
Probab=20.18 E-value=1.3e+02 Score=19.95 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=24.0
Q ss_pred EEEEeecCcc-c---HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 14 ILWLLKFPAV-G---EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 14 ~l~i~g~~~~-~---~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.+++.+.... . .+.+++.++++|++.++++++...
T Consensus 154 ~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~i~~~~q~ 192 (198)
T 3cbc_A 154 KITLYGRTKELTSELKENFIRFSKSLGLPENHIVFPVPI 192 (198)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEECCBCC
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEecCCC
Confidence 3556664321 2 457778899999998889887643
No 485
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=20.15 E-value=84 Score=20.17 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=12.2
Q ss_pred ecCHHHHHHHHHHhcc
Q psy15363 112 ARTHKEYQDIAIRLGT 127 (130)
Q Consensus 112 a~~~~~y~~~a~~l~~ 127 (130)
+.+.++|++.+..|++
T Consensus 167 ~~s~e~~~~~i~~Ll~ 182 (184)
T 4dvc_A 167 AKSLDEYFDLVNYLLT 182 (184)
T ss_dssp CSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3567889988887765
No 486
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=20.11 E-value=57 Score=18.03 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHHhccCCC
Q psy15363 113 RTHKEYQDIAIRLGTDRD 130 (130)
Q Consensus 113 ~~~~~y~~~a~~l~~d~e 130 (130)
.+.+++++.|++++.||.
T Consensus 7 ~~Re~li~~Av~FL~dp~ 24 (54)
T 3ff5_A 7 EFREPLIATAVKFLQNSR 24 (54)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHhCChh
Confidence 456899999999999984
No 487
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=20.02 E-value=81 Score=21.13 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEecCC
Q psy15363 25 EANIQATAQALGLDQHRILFSNVA 48 (130)
Q Consensus 25 ~~~l~~~~~~~g~~~~rv~f~g~~ 48 (130)
.+.+++.++++|++.++++++...
T Consensus 151 ~~~f~~~~~~~G~~~~~ii~~~q~ 174 (190)
T 3s26_A 151 KERFTRFAKSLGLKDDNIIFSVPT 174 (190)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECC
T ss_pred HHHHHHHHHHcCCCHHHEEECCCC
Confidence 457788899999998899998754
No 488
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=20.01 E-value=2.1e+02 Score=20.61 Aligned_cols=57 Identities=12% Similarity=-0.087 Sum_probs=33.0
Q ss_pred HHHhhCCCcEEEEeecCcccHHHHHHHHHHcCCCCCCEEEecCCCHHHHHHhhccccEEEcC
Q psy15363 5 FVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDT 66 (130)
Q Consensus 5 ~il~~~P~a~l~i~g~~~~~~~~l~~~~~~~g~~~~rv~f~g~~~~~~~~~~~~~~Dv~l~~ 66 (130)
.+++++|+.+.+.+-- ....+..++.+.+.|+. +||.|...--.+.... ..|+++..
T Consensus 186 ~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~p~---~~D~v~~~ 242 (332)
T 3i53_A 186 ALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS-GRAQVVVGSFFDPLPA---GAGGYVLS 242 (332)
T ss_dssp HHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCCC---SCSEEEEE
T ss_pred HHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC-cCeEEecCCCCCCCCC---CCcEEEEe
Confidence 4567788887666542 22234455566777886 8999875321121211 58888644
Done!