RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15363
(130 letters)
>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41. This
family of glycosyltransferases includes O-linked
beta-N-acetylglucosamine (O-GlcNAc) transferase, an
enzyme which catalyzes the addition of O-GlcNAc to
serine and threonine residues. In addition to its
function as an O-GlcNAc transferase, human OGT, also
appears to proteolytically cleave the epigenetic
cell-cycle regulator HCF-1.
Length = 468
Score = 253 bits (647), Expect = 3e-84
Identities = 99/125 (79%), Positives = 112/125 (89%)
Query: 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 65
+LK VPNS+LWLL+FPAVGEANIQA AQ +GL RI+FSNVA KEEHVRRGQLADVCLD
Sbjct: 308 ILKRVPNSVLWLLRFPAVGEANIQAYAQEMGLPPRRIVFSNVAPKEEHVRRGQLADVCLD 367
Query: 66 TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 125
TPLCNGHTT MDVLW GTP+VT+P ETLASRVAASQL TLGCPELIA+ +EY+DIA++L
Sbjct: 368 TPLCNGHTTGMDVLWAGTPMVTMPLETLASRVAASQLTTLGCPELIAKDRQEYEDIAVKL 427
Query: 126 GTDRD 130
GTDR+
Sbjct: 428 GTDRE 432
>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase,
SPINDLY family [Posttranslational modification, protein
turnover, chaperones].
Length = 620
Score = 118 bits (298), Expect = 3e-32
Identities = 52/126 (41%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 6 VLKAVPNSILWLLKFPAVGE--ANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVC 63
+L AVPNS+L L E A ++ A+ G+D R+ F A E+H R +AD+
Sbjct: 453 ILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLV 512
Query: 64 LDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAI 123
LDT GHTT+ D LW G PV+T GE ASR AS G PEL+A + +Y + A+
Sbjct: 513 LDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAV 572
Query: 124 RLGTDR 129
G+DR
Sbjct: 573 AFGSDR 578
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzymes, Ornithine and Diaminopimelate
Decarboxylases, and Related Enzymes. This family
includes eukaryotic ornithine decarboxylase (ODC, EC
4.1.1.17), diaminopimelate decarboxylase (DapDC, EC
4.1.1.20), plant and prokaryotic biosynthetic arginine
decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine
decarboxylase (CANSDC), and ODC-like enzymes from
diverse bacterial species. These proteins are fold type
III PLP-dependent enzymes that catalyze essential steps
in the biosynthesis of polyamine and lysine. ODC and
ADC participate in alternative pathways of the
biosynthesis of putrescine, which is the precursor of
aliphatic polyamines in many organisms. ODC catalyzes
the direct synthesis of putrescine from L-ornithine,
while ADC converts L-arginine to agmatine, which is
hydrolysed to putrescine by agmatinase in a pathway
that exists only in plants and bacteria. DapDC converts
meso-2,6-diaminoheptanedioate to L-lysine, which is the
final step of lysine biosynthesis. CANSDC catalyzes the
decarboxylation of carboxynorspermidine, which is the
last step in the synthesis of norspermidine. The
PLP-dependent decarboxylases in this family contain an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. They exist as homodimers with active
sites that lie at the interface between the TIM barrel
domain of one subunit and the beta-sandwich domain of
the other subunit. Prokaryotic ornithine, lysine and
biodegradative arginine decarboxylases are fold type I
PLP-dependent enzymes and are not included in this
family.
Length = 368
Score = 30.3 bits (69), Expect = 0.26
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 4 IFVLKAVPNSIL------WLLKFPAV--GEANIQATAQALGLDQHRILFSNVAAKEEHVR 55
+ +KA PN + F GE + A A G+ RI+F+ A +
Sbjct: 29 FYAVKANPNPHVLRTLAEAGTGFDVASKGELAL---ALAAGVPPERIIFTGPAKSVSEIE 85
Query: 56 RGQLADVCL 64
+ V
Sbjct: 86 AALASGVDH 94
>gnl|CDD|176112 cd08420, PBP2_CysL_like, C-terminal substrate binding domain of
LysR-type transcriptional regulator CysL, which
activates the transcription of the cysJI operon encoding
sulfite reductase, contains the type 2 periplasmic
binding fold. CysL, also known as YwfK, is a regular of
sulfur metabolism in Bacillus subtilis. Sulfur is
required for the synthesis of proteins and essential
cofactors in all living organism. Sulfur can be
assimilated either from inorganic sources (sulfate and
thiosulfate), or from organic sources (sulfate esters,
sulfamates, and sulfonates). CysL activates the
transcription of the cysJI operon encoding sulfite
reductase, which reduces sulfite to sulfide. Both cysL
mutant and cysJI mutant are unable to grow using sulfate
or sulfite as the sulfur source. Like other LysR-type
regulators, CysL also negatively regulates its own
transcription. In Escherichia coli, three LysR-type
activators are involved in the regulation of sulfur
metabolism: CysB, Cbl and MetR. The topology of this
substrate-binding domain is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 201
Score = 29.8 bits (68), Expect = 0.26
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 96 RVAASQLATLGC---PELIARTHKEYQDIAIRL 125
R+ AS T+G P L+AR K Y ++ + L
Sbjct: 3 RIGAST--TIGEYLLPRLLARFRKRYPEVRVSL 33
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 29.2 bits (66), Expect = 0.59
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 89 PGETLASRVAASQLA--TLGCPELIARTHKEYQDIAIR 124
+ A VA QL+ + G P+LI RTH +Y ++R
Sbjct: 176 ATPSPADEVAFFQLSGGSTGTPKLIPRTHNDY-YYSVR 212
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 29.0 bits (65), Expect = 0.70
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 79 LWTGTPVVTLP-GETLASRVAASQLA--TLGCPELIARTHKEY 118
LW +P + T + VA QL+ + G P+LI RTH +Y
Sbjct: 165 LWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDY 207
>gnl|CDD|183688 PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 260
Score = 28.2 bits (63), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 73 TTSMDVLWTGTPVVTLPGETLASRVAASQLAT 104
TS+ + GT VT PG + A ++ QLAT
Sbjct: 146 ATSLTIGKDGTVSVTQPGSSNAVQIGQLQLAT 177
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 28.2 bits (63), Expect = 1.5
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 18/106 (16%)
Query: 20 FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLAD-----VCLDTPLCNGHTT 74
F + EA + A+ +R + AK +R +A L+ LC+
Sbjct: 120 FASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGL 179
Query: 75 SMDVLWTGTPVVTLPGETLASRVAASQLA--TLGCPELIARTHKEY 118
A VA QL+ T G P+LI RTH +Y
Sbjct: 180 F--TPAPPAD---------AGEVAFFQLSGGTTGTPKLIPRTHNDY 214
>gnl|CDD|182768 PRK10837, PRK10837, putative DNA-binding transcriptional regulator;
Provisional.
Length = 290
Score = 27.0 bits (60), Expect = 3.0
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 90 GETLASRVAASQLATLG---CPELIARTHKEYQDIAIRL 125
+ A R+ AS +T+G P +IAR ++Y + + L
Sbjct: 86 EDNGALRIYAS--STIGNYILPAMIARYRRDYPQLPLEL 122
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 26.4 bits (58), Expect = 5.4
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 76 MDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRLGTDR 129
MDV++ GT ET+AS + + + PE + R +E D+ +G +R
Sbjct: 310 MDVMFGGT-------ETVASAIEWAMAELMKSPEDLKRVQQELADV---VGLNR 353
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 26.4 bits (58), Expect = 5.7
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 71 GHTTSMDVLWTGTPVVTLPGETLASRVA-ASQLATLGCPELIARTHKE 117
G + + L G P++ +P + A +L LGC +
Sbjct: 256 GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKELR 303
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 26.1 bits (58), Expect = 6.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 17 LLKFPAVGEANIQATAQALGLDQHRILFSNVAA 49
LLK P + + + LGLDQ R+ S A
Sbjct: 254 LLKIPILSSLVKKKILKGLGLDQARLAGSGAAP 286
>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein. Royal jelly is the
food of queen bee larvae, and is responsible for the
high reproductive ability of the queen. Major royal
jelly proteins make up around 90% of larval jelly
proteins. This family also the sequence-related yellow
protein of drosophila which controls pigmentation of the
adult cuticle and larval mouth parts.
Length = 285
Score = 25.8 bits (57), Expect = 7.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 9 AVPNSIL-----W-----LLKFPAVGEANIQATAQALGLDQHRILF 44
+VP +L W F +G+ N Q+T AL +D + +LF
Sbjct: 157 SVPTEVLRNETNWGNNAQYEDFKDLGDRNTQST--ALAVDPNGVLF 200
>gnl|CDD|223098 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport
and metabolism].
Length = 394
Score = 25.7 bits (57), Expect = 8.4
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 5 FVLKAVPN-SILWLLK-----FPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRR 56
+ +KA N +IL LL F + A A G RI+FS A EE +
Sbjct: 57 YAVKANSNPAILRLLAEEGSGFDVASLGEL-ELALAAGFPPERIVFSGPAKSEEEIAF 113
>gnl|CDD|237789 PRK14690, PRK14690, molybdopterin biosynthesis protein MoeA;
Provisional.
Length = 419
Score = 25.6 bits (56), Expect = 8.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 79 LWTGTPVVTLPGETLASRV 97
LW G PV LPG +A+ V
Sbjct: 304 LWQGVPVFGLPGNPVAALV 322
>gnl|CDD|222103 pfam13399, LytR_C, LytR cell envelope-related transcriptional
attenuator. This family appears at the C-terminus of
members of the LytR_cpsA_psr, pfam03816, family.
Length = 90
Score = 24.8 bits (55), Expect = 9.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 98 AASQLAT-LGCPELIARTHKEYQDIAIRLGTD 128
AA LA LG EL+A + + + LGTD
Sbjct: 56 AARTLAAALGGAELVADPSRADATVDVVLGTD 87
>gnl|CDD|222322 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.
Length = 134
Score = 25.0 bits (55), Expect = 9.2
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 13 SILWLLK--FPAVGEANIQATAQALG--LDQHRILFSNVA---AKEEHVRRGQLADVCLD 65
+LWLL+ P + +A +G ++ L NV E+ ADV L
Sbjct: 16 GLLWLLEEALPLLRKALPDVELHIIGSGPEELARLAPNVHFLGFVEDLAALLASADVALA 75
Query: 66 TPLCNGHTTSM---DVLWTGTPVVTLPGETLASRVAASQLA-TLGCPELIARTHKEYQDI 121
PL G + + + L G PVV + + A L LG L+A +E+ +
Sbjct: 76 -PLRFGAGSPLKLLEALAAGLPVVA-------TDIGAEGLPEDLGWGVLVADDPEEFAEA 127
Query: 122 AIRLGTD 128
+RL D
Sbjct: 128 IVRLLAD 134
>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1. Human
Reticulon 4 Interacting Protein 1 is a member of the
medium chain dehydrogenase/ reductase (MDR) family.
Riticulons are endoplasmic reticulum associated proteins
involved in membrane trafficking and neuroendocrine
secretion. The MDR/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 350
Score = 25.6 bits (57), Expect = 9.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 32 AQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGE 91
++LG D I ++N +EE RG+ DV LDT + ++ +L G VTL
Sbjct: 202 VKSLGAD-DVIDYNNEDFEEELTERGKF-DVILDTVGGDTEKWALKLLKKGGTYVTLVSP 259
Query: 92 TLAS 95
L +
Sbjct: 260 LLKN 263
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.401
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,482,801
Number of extensions: 556731
Number of successful extensions: 538
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 34
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)