RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15363
(130 letters)
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 177 bits (449), Expect = 3e-53
Identities = 95/125 (76%), Positives = 109/125 (87%)
Query: 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 65
+LK VPNS+LWLL+FPAVGE NIQ AQ +GL Q+RI+FS VA KEEHVRRGQLADVCLD
Sbjct: 546 ILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLD 605
Query: 66 TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 125
TPLCNGHTT MDVLW GTP+VT+PGETLASRVAASQL LGC ELIA+ +EY+DIA++L
Sbjct: 606 TPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKL 665
Query: 126 GTDRD 130
GTD +
Sbjct: 666 GTDLE 670
Score = 26.7 bits (58), Expect = 2.9
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 65
L ++P+ + +K P G+ + + A E + RGQ
Sbjct: 426 FLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAE--AVIEMINRGQ------I 477
Query: 66 TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPE 109
NG + S + T GE + + + + G PE
Sbjct: 478 QITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPE 521
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 170 bits (432), Expect = 1e-51
Identities = 51/125 (40%), Positives = 72/125 (57%)
Query: 6 VLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLD 65
VL+ VP+S+LWLL P +A ++A A A G+D R++F +++ R + AD+ LD
Sbjct: 400 VLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLD 459
Query: 66 TPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTHKEYQDIAIRL 125
T N HTT+ D LWTG PV+T PGET A+RVA S LG E+ + A+ L
Sbjct: 460 THPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVAL 519
Query: 126 GTDRD 130
+D
Sbjct: 520 ASDPA 524
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 136 bits (344), Expect = 8e-39
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 6/129 (4%)
Query: 6 VLKAVPNSILWLLKF---PAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADV 62
+ + + + ++ ++ D + +++R D+
Sbjct: 464 IRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLGD--SATAHPHSPYHQYLRILHNCDM 521
Query: 63 CLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPE-LIARTHKEYQDI 121
++ +D++ G V G + + LG PE LIA T EY +
Sbjct: 522 MVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVER 581
Query: 122 AIRLGTDRD 130
A+RL +
Sbjct: 582 AVRLAENHQ 590
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.005
Identities = 26/127 (20%), Positives = 39/127 (30%), Gaps = 35/127 (27%)
Query: 3 DIFVLKAVPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQ---- 58
V+ P S L+ L ++ GLDQ RI FS E ++
Sbjct: 375 KNLVVSGPPQS-LYGLN------LTLRKAKAPSGLDQSRIPFS-----ERKLKFSNRFLP 422
Query: 59 ---------LADVCLDTPLCNGHTTSMDVLWTGT----PVV-TLPGETLASRVAASQLAT 104
L + L N +V + PV T G L RV + ++
Sbjct: 423 VASPFHSHLLVPA---SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL--RVLSGSISE 477
Query: 105 LGCPELI 111
+I
Sbjct: 478 RIVDCII 484
Score = 26.9 bits (59), Expect = 2.7
Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 37/131 (28%)
Query: 7 LKAVPNSILWLLK----FPA--------VGE--ANIQATAQALGL-DQHRILFSNVAAKE 51
L + + LK PA +GE A + + A + + ++F
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA-LASLADVMSIESLVEVVF------- 1787
Query: 52 EHVRRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELI 111
RG V + M + G + E L V E +
Sbjct: 1788 ---YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV-----------ERV 1833
Query: 112 ARTHKEYQDIA 122
+ +I
Sbjct: 1834 GKRTGWLVEIV 1844
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.26
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 26/130 (20%)
Query: 1 MSDIFVLKAVPNSILWLLKFPAVGEANIQ--ATAQALGLDQHRILF----SNVAAKEEHV 54
+ + K N +L L N+Q A L +IL V
Sbjct: 234 LRRLLKSKPYENCLLVL--------LNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAA 284
Query: 55 RRGQLADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIART 114
++ L S+ + + LP E P ++
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-----------VLTTNPRRLSII 333
Query: 115 HKEYQDIAIR 124
+ +D
Sbjct: 334 AESIRDGLAT 343
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 27.7 bits (62), Expect = 0.86
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 85 VVTLPGETLASRVAASQLATLGCPELIARTHKEYQ-DIAIRLGTDR 129
+V + AS + L L P + + Y + ++G DR
Sbjct: 75 IVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADR 120
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha
barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio
vulnificus} PDB: 2plk_A*
Length = 419
Score = 28.0 bits (63), Expect = 0.96
Identities = 2/27 (7%), Positives = 10/27 (37%)
Query: 30 ATAQALGLDQHRILFSNVAAKEEHVRR 56
+ G+ + ++ ++ +R
Sbjct: 113 ELVASEGVPADLTIHTHPIKRDADIRD 139
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP,
group IV decarboxylase, polyami parasitical,
chemotherapy target, putrescine; HET: PLP; 1.60A {Mus
musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Length = 424
Score = 28.0 bits (63), Expect = 1.0
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 30 ATAQALGLDQHRILFSNVAAKEEHVRR 56
Q LG+ R++++N + ++
Sbjct: 96 QLVQGLGVPAERVIYANPCKQVSQIKY 122
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY
beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei}
SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A*
1njj_A*
Length = 425
Score = 27.6 bits (62), Expect = 1.1
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 30 ATAQALGLDQHRILFSNVAAKEEHVRR 56
+ +G+ +I+++N + H+R
Sbjct: 96 QRVRGIGVPPEKIIYANPCKQISHIRY 122
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET:
PLP; 1.90A {Homo sapiens}
Length = 471
Score = 27.7 bits (62), Expect = 1.1
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 31 TAQALGLDQHRILFSNVAAKEEHVRR 56
Q+LG+ RI+++N + ++
Sbjct: 107 LVQSLGVPPERIIYANPCKQVSQIKY 132
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic
ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria
chlorella virus 1} PDB: 2nv9_A*
Length = 372
Score = 27.5 bits (62), Expect = 1.4
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 30 ATAQALGLDQHRILFSNVAAKEEHVRR 56
+G+ RI+F++ + +
Sbjct: 75 KKVIQIGVSPSRIIFAHTMKTIDDLIF 101
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet
domain, structural genomics, israel structural
proteomics center, ISPC; 2.05A {Mus musculus}
Length = 448
Score = 27.3 bits (61), Expect = 1.6
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 30 ATAQALGLDQHRILFSNVAAKEEHVRRGQLADV 62
A Q LG+ I+F++ + ++ V
Sbjct: 96 ALVQELGVSPENIIFTSPCKQVSQIKYAAKVGV 128
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein,
structural genomics, PSI-biology, protei structure
initiative; 3.10A {Escherichia coli}
Length = 666
Score = 27.2 bits (60), Expect = 2.1
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 32 AQALGLDQHRILFSNVAAKEEHVRRGQLADVC 63
A ++ N E++R + +
Sbjct: 158 VLAHAGMTRSVIVCNGYKDREYIRLALIGEKM 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.401
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,930,685
Number of extensions: 106361
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 26
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)