RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15363
         (130 letters)



>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
           [TaxId: 562]}
          Length = 221

 Score = 25.2 bits (54), Expect = 2.4
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 12/33 (36%)

Query: 77  DVLWTGTP------------VVTLPGETLASRV 97
           DV+ TGTP             VT  G +L +RV
Sbjct: 187 DVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRV 219


>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
           (porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 320

 Score = 24.9 bits (54), Expect = 3.5
 Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 4/71 (5%)

Query: 10  VPNSILWLLKFPAVGEANIQATAQALGLDQHRILFSNVAAKEEHVRRGQLADVCLDTPLC 69
           +   ++    F             A   ++   + +    ++         DVCL     
Sbjct: 63  LRCVLI----FGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTS 118

Query: 70  NGHTTSMDVLW 80
           +GH   +    
Sbjct: 119 HGHCGLLSENG 129


>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
          Length = 170

 Score = 24.7 bits (53), Expect = 3.6
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 80  WTGTPVVTLPGETLASRVAASQLATLGCPELIART 114
              T ++ +PG T A R A      +  P+L ART
Sbjct: 126 ANKTLILAMPGSTKACRTA---WENIIAPQLDART 157


>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate
           dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId:
           5724]}
          Length = 362

 Score = 23.6 bits (50), Expect = 9.9
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 60  ADVCLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAASQLATLG 106
           ++V L TPL          +    P+V+   ++++    A  LA  G
Sbjct: 28  SNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREG 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,081
Number of extensions: 17270
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 5
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)