BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15368
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 162/362 (44%), Gaps = 80/362 (22%)
Query: 60 IYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTV 119
+YL +C+ GLLGN LV+YV+LR +KM+T T
Sbjct: 131 LYLAVCVGGLLGNCLVMYVILRHTKMKTAT------------------------------ 160
Query: 120 TNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMT 179
N+YI NLA+AD L+ +PF + L +WPFG+ +CK +
Sbjct: 161 -NIYIFNLALADTLVLLTLPFQGTDI-----------------LLGFWPFGNALCKTVIA 202
Query: 180 TTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMY 239
N FTS+ LT MS DRYVA+CHPI A ++RT ++ V+ W +++ +PV +
Sbjct: 203 IDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIM 262
Query: 240 ASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGP 299
S + C + P ++ G F + F+ F +P+++I V Y L+IR+LR V
Sbjct: 263 GSAQVEDEEIECLVEIPTPQDYWG-PVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRL 321
Query: 300 XXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXCWLP 359
+T+LVL V+ + CW P
Sbjct: 322 LSGSREKDRNLRRITRLVLVVVAVFV-----------------------------GCWTP 352
Query: 360 YWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTC 419
+ +A ++++ ++ F AL Y NS +NPILYAFL +NFK F K C
Sbjct: 353 VQVFVLAQGLGVQPSSETAVAILRFCT--ALGYVNSCLNPILYAFLDENFKACFRKFCCA 410
Query: 420 AA 421
+A
Sbjct: 411 SA 412
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 126/259 (48%), Gaps = 59/259 (22%)
Query: 45 CPHSTGPTLFFAT--QTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADEC 102
CP + P++ A +Y I+C+ GL GN LV+YV++R++KM+T T
Sbjct: 6 CPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTAT------------- 52
Query: 103 FLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVAS 162
N+YI NLA+AD +PF S++Y
Sbjct: 53 ------------------NIYIFNLALADALATSTLPF----QSVNY------------- 77
Query: 163 LSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVS 222
L WPFG+++CKI ++ N FTS L MS DRY+AVCHP+ A + RTP +K+V+
Sbjct: 78 LMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVN 137
Query: 223 FIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPET----ENLNGQSAFILYTFILGFAI 278
W S+ +PV+ A+ + + C + + ENL + FI F +
Sbjct: 138 VCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENL-----LKICVFIFAFIM 192
Query: 279 PLVLIFVFYYLVIRKLRTV 297
P+++I V Y L+I +L++V
Sbjct: 193 PVLIITVCYGLMILRLKSV 211
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 356 CWLPYWITQI--ALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
CW P I I ALI P +++ + + AL Y+NS +NP+LYAFL +NFK+ F
Sbjct: 395 CWTPIHIYVIIKALITIP----ETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF 450
Query: 414 LKAC 417
+ C
Sbjct: 451 REFC 454
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 50/254 (19%)
Query: 46 PHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLI 105
P P + +Y ++ + GL+GN+LV++V++R++KM+T
Sbjct: 14 PAHISPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTA----------------- 56
Query: 106 GIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSS 165
TN+YI NLA+AD +PF S Y L +
Sbjct: 57 --------------TNIYIFNLALADALVTTTMPF----QSTVY-------------LMN 85
Query: 166 YWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIA 225
WPFGD++CKI ++ N FTS LT+MS DRY+AVCHP+ A + RTP +K+++
Sbjct: 86 SWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICI 145
Query: 226 WTASAIFMIPVIMYASIIDSENTK--SCNIMWPETENLNGQSAFILYTFILGFAIPLVLI 283
W S+ I I+ E+ C++ +P+ + + FI F IP+++I
Sbjct: 146 WLLSSSVGISAIVLGGTKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLII 205
Query: 284 FVFYYLVIRKLRTV 297
V Y L+I +L++V
Sbjct: 206 IVCYTLMILRLKSV 219
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLK 415
CW P I + ++++ F IA L Y+NS++NPILYAFL +NFK+ F
Sbjct: 408 CWTPIHIFILVEALGSTSHSTAALSSYYFCIA--LGYTNSSLNPILYAFLDENFKRCFRD 465
Query: 416 AC 417
C
Sbjct: 466 FC 467
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 49/245 (20%)
Query: 53 LFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMI 112
L A +Y +C GLLGN LV++ ++R++K++T T
Sbjct: 13 LAIAITALYSAVCAVGLLGNVLVMFGIVRYTKLKTAT----------------------- 49
Query: 113 TIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDL 172
N+YI NLA+AD +PF S Y L WPFG+L
Sbjct: 50 --------NIYIFNLALADALATSTLPF----QSAKY-------------LMETWPFGEL 84
Query: 173 MCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIF 232
+CK ++ N FTS LT+MS DRY+AVCHP+ A + RTP +K+++ W ++
Sbjct: 85 LCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGV 144
Query: 233 MIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIR 292
+P+++ A + C + +P + + + + F+ F +P+++I V Y L++
Sbjct: 145 GVPIMVMAVTQPRDGAVVCMLQFP-SPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLL 203
Query: 293 KLRTV 297
+LR+V
Sbjct: 204 RLRSV 208
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLK 415
CW P I I + + + V + AL Y+NS++NP+LYAFL +NFK+ F +
Sbjct: 392 CWAPIHIFVIVWTLVDINR-RDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQ 450
Query: 416 ACTCAAGKD 424
C G+
Sbjct: 451 LCRTPCGRQ 459
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 52/240 (21%)
Query: 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQT 118
TIY II +TG++GN LVI +V+ + K K+++
Sbjct: 53 TIYSIIFLTGIVGNGLVI-LVMGYQK------------------------------KLRS 81
Query: 119 VTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYM 178
+T+ Y ++L++AD F+I +PF + VA+ W FG+ +CK
Sbjct: 82 MTDKYRLHLSVADLLFVITLPFWAVDA--------------VAN----WYFGNFLCKAVH 123
Query: 179 TTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIM 238
++N ++S L +S DRY+A+ H + R KVV W + + IP +
Sbjct: 124 VIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFI 183
Query: 239 YASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVG 298
+A++ ++++ C+ +P N F ++G +P ++I Y ++I KL G
Sbjct: 184 FANVSEADDRYICDRFYP---NDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSG 240
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 356 CWLPYWI----TQIALIFTPPRQCQSSITVIVFL-IAGALSYSNSAMNPILYAFLSDNFK 410
CWLPY+I L+ + C+ TV ++ I AL++ + +NPILYAFL FK
Sbjct: 425 CWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFK 484
Query: 411 KSFLKACTCA 420
S A T
Sbjct: 485 TSAQHALTSG 494
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 52/240 (21%)
Query: 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQT 118
TIY II +TG++GN LVI +V+ + K K+++
Sbjct: 53 TIYSIIFLTGIVGNGLVI-LVMGYQK------------------------------KLRS 81
Query: 119 VTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYM 178
+T+ Y ++L++AD F+I +PF + VA+ W FG+ +CK
Sbjct: 82 MTDKYRLHLSVADLLFVITLPFWAVDA--------------VAN----WYFGNFLCKAVH 123
Query: 179 TTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIM 238
++N ++S L +S DRY+A+ H + R KVV W + + IP +
Sbjct: 124 VIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFI 183
Query: 239 YASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVG 298
+A++ ++++ C+ +P N F ++G +P ++I Y ++I KL G
Sbjct: 184 FANVSEADDRYICDRFYP---NDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSG 240
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 356 CWLPYWI----TQIALIFTPPRQCQSSITVIVFL-IAGALSYSNSAMNPILYAFLSDNFK 410
CWLPY+I L+ + C+ TV ++ I AL++ + +NPILYAFL FK
Sbjct: 425 CWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFK 484
Query: 411 KSFLKACT 418
S A T
Sbjct: 485 TSAQHALT 492
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 52/236 (22%)
Query: 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQT 118
TIY II +TG++GN LVI +V+ + K K+++
Sbjct: 53 TIYSIIFLTGIVGNGLVI-LVMGYQK------------------------------KLRS 81
Query: 119 VTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYM 178
+T+ Y ++L++AD F+I +PF + VA+ W FG+ +CK
Sbjct: 82 MTDKYRLHLSVADLLFVITLPFWAVDA--------------VAN----WYFGNFLCKAVH 123
Query: 179 TTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIM 238
++N ++S L +S DRY+A+ H + R KVV W + + IP +
Sbjct: 124 VIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFI 183
Query: 239 YASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKL 294
+A++ ++++ C+ +P N F ++G +P ++I Y ++I KL
Sbjct: 184 FANVSEADDRYICDRFYP---NDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKL 236
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 356 CWLPYWI----TQIALIFTPPRQCQSSITVIVFL-IAGALSYSNSAMNPILYAFLSDNFK 410
CWLPY+I L+ + C+ TV ++ I AL++ + +NPILYAFL FK
Sbjct: 422 CWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFK 481
Query: 411 KSFLKACTCA 420
S A T
Sbjct: 482 TSAQHALTSG 491
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 29/196 (14%)
Query: 104 LIGIPFLMITIK----MQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFR 159
+IG +M++IK +QTV N ++ +LA AD +IG+ F M +L+
Sbjct: 38 IIGNILVMVSIKVNRHLQTVNNYFLFSLACAD--LIIGV-FSM-------------NLYT 81
Query: 160 VASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISK 219
+ ++ YWP G ++C +++ + S + L I+S DRY V P+T P RT ++
Sbjct: 82 LYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAG 141
Query: 220 VVSFIAWTASAIFMIPVIMYASIIDSENT---KSCNIMWPETENLNGQSAFILYTFILGF 276
++ AW S I P I++ I T C I +A T I F
Sbjct: 142 MMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYI------QFFSNAAVTFGTAIAAF 195
Query: 277 AIPLVLIFVFYYLVIR 292
+P++++ V Y+ + R
Sbjct: 196 YLPVIIMTVLYWHISR 211
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 357 WLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKA 416
W PY + + F C I V+ I L Y NS +NP YA + FKK+F
Sbjct: 401 WAPYNVMVLINTF-----CAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHL 455
Query: 417 CTCAAGKDVNAT 428
C K++ AT
Sbjct: 456 LMCHY-KNIGAT 466
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 132/309 (42%), Gaps = 56/309 (18%)
Query: 113 TIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDL 172
T ++QT+TN++I +LA AD ++G+ ++V + W +G
Sbjct: 39 TQRLQTLTNLFITSLACAD--LVVGL--------------LVVPFGATLVVRGTWLWGSF 82
Query: 173 MCKIYMTTTSINQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI 231
+C+++ T+ + T+SI L +++ DRY+A+ P +L T +KV+ W SA+
Sbjct: 83 LCELW-TSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISAL 141
Query: 232 F-MIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIP-LVLIFV---F 286
+P++M+ + C P + A+ + + I+ F IP L++IFV
Sbjct: 142 VSFLPIMMHWWRDEDPQALKCYQD-PGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRV 200
Query: 287 YYLVIRKLRTVGPXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXXXXXXXXXXXXX 346
Y ++R + K L+T+G
Sbjct: 201 YREAKEQIRKIDRASKRKTSRVMLMREHK------ALKTLG------------------- 235
Query: 347 XXXXXXXXXCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLS 406
CWLP+++ I +F + + +F+ L Y+NSAMNPI+Y S
Sbjct: 236 -IIMGVFTLCWLPFFLVNIVNVFN-----RDLVPDWLFVAFNWLGYANSAMNPIIYC-RS 288
Query: 407 DNFKKSFLK 415
+F+K+F +
Sbjct: 289 PDFRKAFKR 297
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 132/305 (43%), Gaps = 50/305 (16%)
Query: 113 TIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDL 172
T ++QT+TN++I +LA AD ++G+ ++V + W +G
Sbjct: 39 TQRLQTLTNLFITSLACAD--LVVGL--------------LVVPFGATLVVRGTWLWGSF 82
Query: 173 MCKIYMTTTSINQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI 231
+C+++ T+ + T+SI L +++ DRY+A+ P +L T +KV+ W SA+
Sbjct: 83 LCELW-TSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISAL 141
Query: 232 F-MIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLV 290
+P++M+ + C P + A+ + + I+ F IPL+++ ++
Sbjct: 142 VSFLPIMMHWWRDEDPQALKCYQD-PGCCDFVTNRAYAIASSIISFYIPLLIMI---FVA 197
Query: 291 IRKLRTVGPXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXXXXXXXXXXXXXXXXX 350
+R R V L+ L+T+G
Sbjct: 198 LRVYREAKEQIRKIDRASKRKRVM-LMREHKALKTLG--------------------IIM 236
Query: 351 XXXXXCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFK 410
CWLP+++ I +F + + +F+ L Y+NSAMNPI+Y S +F+
Sbjct: 237 GVFTLCWLPFFLVNIVNVFN-----RDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFR 290
Query: 411 KSFLK 415
K+F +
Sbjct: 291 KAFKR 295
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 136/353 (38%), Gaps = 60/353 (16%)
Query: 63 IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNM 122
+I + + GN LVI + +F ++QTVTN +I +LA AD
Sbjct: 43 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACAD---------------------- 80
Query: 123 YIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTS 182
++ LA+ +PF +IL+ + W FG+ C+ + T+
Sbjct: 81 LVMGLAV--------VPFGAA--------HILMKM---------WTFGNFWCEFW-TSID 114
Query: 183 INQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI-FMIPVIMYA 240
+ T+SI L +++ DRY A+ P +L T ++V+ + W S + +P+ M+
Sbjct: 115 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 174
Query: 241 SIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPX 300
+ +C + Q A+ + + I+ F +PLV++ Y V ++ +
Sbjct: 175 YRATHQEAINCYAEETCCDFFTNQ-AYAIASSIVSFYVPLVIMVFVYSRVFQEAKR---Q 230
Query: 301 XXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXCWLPY 360
V L RT CWLP+
Sbjct: 231 LQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPF 290
Query: 361 WITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
+I I + + I V+++ + Y NS NP++Y S +F+ +F
Sbjct: 291 FIVNIVHVIQ-----DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 337
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/353 (20%), Positives = 134/353 (37%), Gaps = 60/353 (16%)
Query: 63 IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNM 122
+I + + GN LVI + +F ++QTVTN +I +LA AD
Sbjct: 191 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACAD---------------------- 228
Query: 123 YIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTS 182
++ LA+ +PF + L+ W FG+ C+ + T+
Sbjct: 229 LVMGLAV--------VPFGAAHI-----------------LTKTWTFGNFWCEFW-TSID 262
Query: 183 INQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI-FMIPVIMYA 240
+ T+SI L +++ DRY A+ P +L T ++V+ + W S + +P+ M+
Sbjct: 263 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 322
Query: 241 SIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPX 300
+ +C + Q A+ + + I+ F +PLV++ Y V ++ +
Sbjct: 323 YRATHQEAINCYAEETCCDFFTNQ-AYAIASSIVSFYVPLVIMVFVYSRVFQEAKR---Q 378
Query: 301 XXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXCWLPY 360
V L RT CWLP+
Sbjct: 379 LQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPF 438
Query: 361 WITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
+I I + + I V+++ + Y NS NP++Y S +F+ +F
Sbjct: 439 FIVNIVHVIQD-----NLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 485
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 136/353 (38%), Gaps = 60/353 (16%)
Query: 63 IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNM 122
+I + + GN LVI + +F ++QTVTN +I +LA AD
Sbjct: 42 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACAD---------------------- 79
Query: 123 YIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTS 182
++ LA+ +PF +IL+ + W FG+ C+ + T+
Sbjct: 80 LVMGLAV--------VPFGAA--------HILMKM---------WTFGNFWCEFW-TSID 113
Query: 183 INQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI-FMIPVIMYA 240
+ T+SI L +++ DRY A+ P +L T ++V+ + W S + +P+ M+
Sbjct: 114 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 173
Query: 241 SIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPX 300
+ +C + Q A+ + + I+ F +PLV++ Y V ++ +
Sbjct: 174 YRATHQEAINCYANETCCDFFTNQ-AYAIASSIVSFYVPLVIMVFVYSRVFQEAKR---Q 229
Query: 301 XXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXCWLPY 360
V L RT CWLP+
Sbjct: 230 LQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPF 289
Query: 361 WITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
+I I + + I V+++ + Y NS NP++Y S +F+ +F
Sbjct: 290 FIVNIVHVIQ-----DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 336
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 135/353 (38%), Gaps = 60/353 (16%)
Query: 63 IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNM 122
+I + + GN LVI + +F ++QTVTN +I +LA AD
Sbjct: 19 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACAD---------------------- 56
Query: 123 YIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTS 182
++ LA+ +PF +IL+ + W FG+ C+ + T+
Sbjct: 57 LVMGLAV--------VPFGAA--------HILMKM---------WTFGNFWCEFW-TSID 90
Query: 183 INQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI-FMIPVIMYA 240
+ T+SI L +++ DRY A+ P +L T ++V+ + W S + +P+ M+
Sbjct: 91 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 150
Query: 241 SIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPX 300
+ +C + Q A+ + + I+ F +PLV I VF Y R +
Sbjct: 151 YRATHQEAINCYANETCCDFFTNQ-AYAIASSIVSFYVPLV-IMVFVYS--RVFQEAKRQ 206
Query: 301 XXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXCWLPY 360
V L RT CWLP+
Sbjct: 207 LQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPF 266
Query: 361 WITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
+I I + + I V+++ + Y NS NP++Y S +F+ +F
Sbjct: 267 FIVNIVHVIQD-----NLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 313
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/354 (21%), Positives = 138/354 (38%), Gaps = 90/354 (25%)
Query: 63 IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNM 122
+I + + GN LVI + +F ++QTVTN +I +LA AD
Sbjct: 14 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACAD---------------------- 51
Query: 123 YIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTS 182
++ LA+ +PF + L+ W FG+ C+ + T+
Sbjct: 52 LVMGLAV--------VPFGAAHI-----------------LTKTWTFGNFWCEFW-TSID 85
Query: 183 INQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI-FMIPVIMYA 240
+ T+SI L +++ DRY A+ P +L T ++V+ + W S + +P+ M+
Sbjct: 86 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 145
Query: 241 SIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPX 300
+ +C + Q A+ + + I+ F +PLV++ Y V ++ +
Sbjct: 146 YRATHQEAINCYAEETCCDFFTNQ-AYAIASSIVSFYVPLVIMVFVYSRVFQEAKR---- 200
Query: 301 XXXXXXXXXXXXVTKLVLTV-ITLRTVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXCWLP 359
+ K L L+T+G CWLP
Sbjct: 201 --------QLQKIDKFCLKEHKALKTLG--------------------IIMGTFTLCWLP 232
Query: 360 YWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
++I I + + I V+++ + Y NS NP++Y S +F+ +F
Sbjct: 233 FFIVNIVHVIQ-----DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 280
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 99/262 (37%), Gaps = 47/262 (17%)
Query: 161 ASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKV 220
AS + W FG +CK+ +N ++ + L +S DRY+A+ H T + + K
Sbjct: 69 ASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHA-TRTLTQKRHLVKF 127
Query: 221 VSFIAWTASAIFMIPVIMYASIIDSENTKSC--NIMWPETENLNGQSAFILYTFILGFAI 278
V W S +P ++ N+ ++ +T + +TF GF +
Sbjct: 128 VCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTF--GFIV 185
Query: 279 PLVLIFVFYYLVIRKLRTVGPXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXXXXX 338
PL ++ Y +R L +++ V+ +
Sbjct: 186 PLFVMLFCYGFTLRTL--------FKAHMGQKHRAMRVIFAVVLI--------------- 222
Query: 339 XXXXXXXXXXXXXXXXXCWLPYWITQIA--LIFTPPRQ--CQSSITVIVFLIAGA-LSYS 393
CWLPY + +A L+ T Q C+ + L A L +
Sbjct: 223 --------------FLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFL 268
Query: 394 NSAMNPILYAFLSDNFKKSFLK 415
+S +NPI+YAF+ NF+ FLK
Sbjct: 269 HSCLNPIIYAFIGQNFRHGFLK 290
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 125/337 (37%), Gaps = 62/337 (18%)
Query: 104 LIGIPFLMITI-------KMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVS 156
++G P +T+ K++T N ++NLA+AD + G +
Sbjct: 50 MLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG--------------GFTTT 95
Query: 157 LFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPF 216
L+ SL Y+ FG C + ++ + L +++ +RYV VC P++
Sbjct: 96 LY--TSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENH 153
Query: 217 ISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGF 276
V+F A A P++ ++ I SC I + +F++Y F++ F
Sbjct: 154 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF 213
Query: 277 AIPLVLIFVFY-YLVIRKLRTVGPXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXX 335
IPL++IF Y LV VT++V+ ++ +
Sbjct: 214 IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLI--------- 264
Query: 336 XXXXXXXXXXXXXXXXXXXXCWLPYWITQIAL-IFTPPRQCQSSITVIVFLIAGALSYSN 394
CWLPY +A IFT C I + I + ++
Sbjct: 265 --------------------CWLPY--AGVAFYIFTHQGSCFGPIFMT---IPAFFAKTS 299
Query: 395 SAMNPILYAFLSDNFKKSFLKACTCAA---GKDVNAT 428
+ NP++Y ++ F+ + C G D +T
Sbjct: 300 AVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEAST 336
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 125/337 (37%), Gaps = 62/337 (18%)
Query: 104 LIGIPFLMITI-------KMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVS 156
++G P +T+ K++T N ++NLA+AD + G +
Sbjct: 50 MLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG--------------GFTTT 95
Query: 157 LFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPF 216
L+ SL Y+ FG C + ++ + L +++ +RYV VC P++
Sbjct: 96 LY--TSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENH 153
Query: 217 ISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGF 276
V+F A A P++ ++ I SC I + +F++Y F++ F
Sbjct: 154 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF 213
Query: 277 AIPLVLIFVFY-YLVIRKLRTVGPXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXX 335
IPL++IF Y LV VT++V+ ++ +
Sbjct: 214 IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLI--------- 264
Query: 336 XXXXXXXXXXXXXXXXXXXXCWLPYWITQIAL-IFTPPRQCQSSITVIVFLIAGALSYSN 394
CWLPY +A IFT C I + I + ++
Sbjct: 265 --------------------CWLPY--AGVAFYIFTHQGSCFGPIFMT---IPAFFAKTS 299
Query: 395 SAMNPILYAFLSDNFKKSFLKACTCAA---GKDVNAT 428
+ NP++Y ++ F+ + C G D +T
Sbjct: 300 AVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEAST 336
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 125/337 (37%), Gaps = 62/337 (18%)
Query: 104 LIGIPFLMITI-------KMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVS 156
++G P +T+ K++T N ++NLA+AD + G +
Sbjct: 49 MLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG--------------GFTTT 94
Query: 157 LFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPF 216
L+ SL Y+ FG C + ++ + L +++ +RYV VC P++
Sbjct: 95 LY--TSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENH 152
Query: 217 ISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGF 276
V+F A A P++ ++ I SC I + +F++Y F++ F
Sbjct: 153 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF 212
Query: 277 AIPLVLIFVFY-YLVIRKLRTVGPXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXX 335
IPL++IF Y LV VT++V+ ++ +
Sbjct: 213 IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLI--------- 263
Query: 336 XXXXXXXXXXXXXXXXXXXXCWLPYWITQIAL-IFTPPRQCQSSITVIVFLIAGALSYSN 394
CWLPY +A IFT C I + I + ++
Sbjct: 264 --------------------CWLPY--AGVAFYIFTHQGSCFGPIFMT---IPAFFAKTS 298
Query: 395 SAMNPILYAFLSDNFKKSFLKACTCAA---GKDVNAT 428
+ NP++Y ++ F+ + C G D +T
Sbjct: 299 AVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEAST 335
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 124/337 (36%), Gaps = 62/337 (18%)
Query: 104 LIGIPFLMITI-------KMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVS 156
++G P +T+ K++T N ++NLA+AD + G +
Sbjct: 50 MLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG--------------FTTT 95
Query: 157 LFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPF 216
L+ SL Y+ FG C + ++ + L +++ +RYV VC P++
Sbjct: 96 LY--TSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENH 153
Query: 217 ISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGF 276
V+F A A P++ ++ I SC I + +F++Y F++ F
Sbjct: 154 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF 213
Query: 277 AIPLVLIFVFY-YLVIRKLRTVGPXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXX 335
IPL++IF Y LV VT++V+ + +
Sbjct: 214 IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIYVIAFLI--------- 264
Query: 336 XXXXXXXXXXXXXXXXXXXXCWLPYWITQIAL-IFTPPRQCQSSITVIVFLIAGALSYSN 394
CWLPY +A IFT C I + I + ++
Sbjct: 265 --------------------CWLPY--AGVAFYIFTHQGSCFGPIFMT---IPAFFAKTS 299
Query: 395 SAMNPILYAFLSDNFKKSFLKACTCAA---GKDVNAT 428
+ NP++Y ++ F+ + C G D +T
Sbjct: 300 AVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEAST 336
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 103/235 (43%), Gaps = 51/235 (21%)
Query: 63 IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNM 122
+I + + GN LVI + +F ++QTVTN +I +LA AD
Sbjct: 50 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACAD---------------------- 87
Query: 123 YIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTS 182
++ LA+ +PF +IL+ + W FG+ C+ + T+
Sbjct: 88 LVMGLAV--------VPFGAA--------HILMKM---------WTFGNFWCEFW-TSID 121
Query: 183 INQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI-FMIPVIMYA 240
+ T+SI+ L +++ DRY A+ P +L T ++V+ + W S + +P+ M+
Sbjct: 122 VLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 181
Query: 241 SIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLR 295
+ +C + Q A+ + + I+ F +PLV++ Y V ++ +
Sbjct: 182 YRATHQEAINCYAEETCCDFFTNQ-AYAIASSIVSFYVPLVIMVFVYSRVFQEAK 235
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
CWLP++I I + + I V+++ + Y NS NP++Y S +F+ +F
Sbjct: 421 CWLPFFIVNIVHVIQ-----DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 472
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 124/337 (36%), Gaps = 62/337 (18%)
Query: 104 LIGIPFLMITI-------KMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVS 156
++G P +T+ K++T N ++NLA+AD + G +
Sbjct: 50 MLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG--------------GFTTT 95
Query: 157 LFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPF 216
L+ SL Y+ FG C + ++ + L +++ +RYV VC P++
Sbjct: 96 LY--TSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENH 153
Query: 217 ISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGF 276
V+F A A P++ ++ I SC I + +F++Y F++ F
Sbjct: 154 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF 213
Query: 277 AIPLVLIFVFY-YLVIRKLRTVGPXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXX 335
IPL++IF Y LV VT++V+ ++ +
Sbjct: 214 IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLI--------- 264
Query: 336 XXXXXXXXXXXXXXXXXXXXCWLPYWITQIAL-IFTPPRQCQSSITVIVFLIAGALSYSN 394
CWLPY +A IFT S I I + ++
Sbjct: 265 --------------------CWLPY--AGVAFYIFT---HQGSDFGPIFMTIPAFFAKTS 299
Query: 395 SAMNPILYAFLSDNFKKSFLKACTCAA---GKDVNAT 428
+ NP++Y ++ F+ + C G D +T
Sbjct: 300 AVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEAST 336
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 124/337 (36%), Gaps = 62/337 (18%)
Query: 104 LIGIPFLMITI-------KMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVS 156
++G P +T+ K++T N ++NLA+AD + G +
Sbjct: 49 MLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG--------------GFTTT 94
Query: 157 LFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPF 216
L+ SL Y+ FG C + ++ + L +++ +RYV VC P++
Sbjct: 95 LY--TSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENH 152
Query: 217 ISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGF 276
V+F A A P++ ++ I SC I + +F++Y F++ F
Sbjct: 153 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF 212
Query: 277 AIPLVLIFVFY-YLVIRKLRTVGPXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXX 335
IPL++IF Y LV VT++V+ ++ +
Sbjct: 213 IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLI--------- 263
Query: 336 XXXXXXXXXXXXXXXXXXXXCWLPYWITQIAL-IFTPPRQCQSSITVIVFLIAGALSYSN 394
CWLPY +A IFT S I I + ++
Sbjct: 264 --------------------CWLPY--AGVAFYIFT---HQGSDFGPIFMTIPAFFAKTS 298
Query: 395 SAMNPILYAFLSDNFKKSFLKACTCAA---GKDVNAT 428
+ NP++Y ++ F+ + C G D +T
Sbjct: 299 AVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEAST 335
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 102/235 (43%), Gaps = 51/235 (21%)
Query: 63 IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNM 122
+I + + GN LVI + +F ++QTVTN +I +LA AD
Sbjct: 50 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACAD---------------------- 87
Query: 123 YIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTS 182
++ LA+ +PF +IL+ + W FG+ C+ + T+
Sbjct: 88 LVMGLAV--------VPFGAA--------HILMKM---------WTFGNFWCEFW-TSID 121
Query: 183 INQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI-FMIPVIMYA 240
+ T+SI L +++ DRY A+ P +L T ++V+ + W S + +P+ M+
Sbjct: 122 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 181
Query: 241 SIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLR 295
+ +C + Q A+ + + I+ F +PLV++ Y V ++ +
Sbjct: 182 YRATHQEAINCYAEETCCDFFTNQ-AYAIASSIVSFYVPLVIMVFVYSRVFQEAK 235
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
CWLP++I I + + I V+++ + Y NS NP++Y S +F+ +F
Sbjct: 421 CWLPFFIVNIVHVIQ-----DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 472
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 102/235 (43%), Gaps = 51/235 (21%)
Query: 63 IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNM 122
+I + + GN LVI + +F ++QTVTN +I +LA AD
Sbjct: 49 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACAD---------------------- 86
Query: 123 YIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTS 182
++ LA+ +PF +IL+ + W FG+ C+ + T+
Sbjct: 87 LVMGLAV--------VPFGAA--------HILMKM---------WTFGNFWCEFW-TSID 120
Query: 183 INQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI-FMIPVIMYA 240
+ T+SI L +++ DRY A+ P +L T ++V+ + W S + +P+ M+
Sbjct: 121 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 180
Query: 241 SIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLR 295
+ +C + Q A+ + + I+ F +PLV++ Y V ++ +
Sbjct: 181 YRATHQEAINCYAEETCCDFFTNQ-AYAIASSIVSFYVPLVIMVFVYSRVFQEAK 234
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
CWLP++I I + + I V+++ + Y NS NP++Y S +F+ +F
Sbjct: 420 CWLPFFIVNIVHVIQ-----DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 471
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 21/182 (11%)
Query: 115 KMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMC 174
K+ TV N+YIV+L++AD ++G +++ M+I Y L S W G +C
Sbjct: 38 KLHTVGNLYIVSLSVAD--LIVGA--VVMPMNILY------------LLMSKWSLGRPLC 81
Query: 175 KIYMTTTSINQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFM 233
+++ + T+SIF + I+ DRY +V P+ RT + AW S +++
Sbjct: 82 LFWLSMDYVAS-TASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWV 140
Query: 234 IPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRK 293
IP++ + + + + + ET+ + F + T I+ F +P +L+ FY + +
Sbjct: 141 IPILGWNHFMQQTSVRREDKC--ETD-FYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKA 197
Query: 294 LR 295
+R
Sbjct: 198 VR 199
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLK 415
CW+PY+I + + F C++ + + L Y NS +NP++Y ++NFKK+F +
Sbjct: 385 CWIPYFIFFMVIAF-----CKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKR 439
Query: 416 ACTCAAGKDV 425
+G+++
Sbjct: 440 ILHIRSGENL 449
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 113 TIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDL 172
T +QT NM+I+NLA +D F + F ++T+S W FG
Sbjct: 62 TKSLQTPANMFIINLAFSDFTFSLVNGFPLMTIS---------------CFLKKWIFGFA 106
Query: 173 MCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIF 232
CK+Y I F S + + ++S DRY + P+ A + + ++ W S ++
Sbjct: 107 ACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW 166
Query: 233 MIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVI 291
I I E CN + + + IL FILGF P+++IF Y+ ++
Sbjct: 167 AIGPIFGWGAYTLEGVL-CNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIV 224
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 113 TIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDL 172
T +QT NM+I+NLA +D F + F ++T+S W FG
Sbjct: 61 TKSLQTPANMFIINLAFSDFTFSLVNGFPLMTIS---------------CFLKKWIFGFA 105
Query: 173 MCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIF 232
CK+Y I F S + + ++S DRY + P+ A + + ++ W S ++
Sbjct: 106 ACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW 165
Query: 233 MIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVI 291
I I E CN + + + IL FILGF P+++IF Y+ ++
Sbjct: 166 AIGPIFGWGAYTLEGVL-CNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIV 223
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 115 KMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMC 174
+M+TVTN ++VNLA A+ + ++ +Y ++ + W +G C
Sbjct: 62 RMRTVTNYFLVNLAFAEA----SMAAFNTVVNFTY------------AVHNEWYYGLFYC 105
Query: 175 KIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMI 234
K + F S +T ++ DRY+A+ HP+ P L +KVV + W + +
Sbjct: 106 KFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQ-PRLSAT-ATKVVICVIWVLALLLAF 163
Query: 235 PVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLI 283
P Y++ + C I WPE N + + + +L + +PL++I
Sbjct: 164 PQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVI 212
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLK 415
CWLP+ I + P + I V+L L+ S++ NPI+Y L+D F+ F
Sbjct: 260 CWLPFHIFFLLPYINPDLYLKKFIQQ-VYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKH 318
Query: 416 ACTCA--------AGKDVNATLHLENS 434
A C G ++ +T +L+
Sbjct: 319 AFRCCPFISAGDYEGLEMKSTRYLQTQ 345
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 115 KMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMC 174
+++TV N ++++LA AD +IG+ I ++LF + + W G+L C
Sbjct: 42 QLKTVNNYFLLSLACAD--LIIGV--------------ISMNLFTTYIIMNRWALGNLAC 85
Query: 175 KIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMI 234
++++ + S + L ++S DRY ++ P+T RT + V+ +AW S +
Sbjct: 86 DLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWA 145
Query: 235 PVIMY 239
P I++
Sbjct: 146 PAILF 150
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 357 WLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF--L 414
W PY I + F C S I + + L Y NS +NP+ YA + F+ +F L
Sbjct: 387 WTPYNIMVLVNTF-----CDSCIPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTL 441
Query: 415 KACTC 419
C C
Sbjct: 442 LLCQC 446
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 51/235 (21%)
Query: 63 IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNM 122
+I + + GN LVI + +F ++QTVTN +I +LA AD
Sbjct: 18 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACAD---------------------- 55
Query: 123 YIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTS 182
++ LA+ +PF + L W FG+ C+ + T+
Sbjct: 56 LVMGLAV--------VPFGAACI-----------------LMKMWTFGNFWCEFW-TSID 89
Query: 183 INQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAI-FMIPVIMYA 240
+ T+SI L +++ DRY A+ P +L T ++V+ + W S + +P+ M+
Sbjct: 90 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW 149
Query: 241 SIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLR 295
+ +C + Q A+ + + I+ F +PLV++ Y V ++ +
Sbjct: 150 YRATHQEAINCYAEETCCDFFTNQ-AYAIASSIVSFYVPLVIMVFVYSRVFQEAK 203
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
CWLP++I I + + I V+++ + Y NS NP++Y S +F+ +F
Sbjct: 389 CWLPFFIVNIVHVIQ-----DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 440
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 96/210 (45%), Gaps = 22/210 (10%)
Query: 89 TNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSIS 148
T +++V+L + ++ I ++ +K++ +Y+++LA AD F+ +PF IS
Sbjct: 28 TGVFVVSLPLN----IMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPF-----KIS 78
Query: 149 YWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPIT 208
Y+ S W FG +C+ N + S + +T++S DR++AV +P+
Sbjct: 79 YYFS-----------GSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQ 127
Query: 209 APNLRTPFISKVVSFIAWTASAIFMIPVIMYASIID--SENTKSCNIMWPETENLNGQSA 266
+ + RT + W + ++P+++ I +C+ + ET +
Sbjct: 128 SLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPGLGITTCHDVLSETLLEGYYAY 187
Query: 267 FILYTFILGFAIPLVLIFVFYYLVIRKLRT 296
+ + F +PL++ V Y +IR L +
Sbjct: 188 YFSAFSAVFFFVPLIISTVCYVSIIRCLSS 217
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 356 CWLPYWITQIALIFTPPRQCQS---SITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKS 412
CWLPY + ++ + Q + +++ AL+Y++SA+NPILY +S NF++
Sbjct: 421 CWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQV 480
Query: 413 FLK--ACTC 419
FL AC C
Sbjct: 481 FLSTLACLC 489
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 155 VSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRT 214
V L+ + W FGD C+ Y + +++ + +S RY+A+CHP A L +
Sbjct: 91 VELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMS 150
Query: 215 PFISKVVSFIA--WTASAIFMIPVI 237
S+ FI+ W ASA+ IP++
Sbjct: 151 R--SRTKKFISAIWLASALLAIPML 173
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 141/373 (37%), Gaps = 98/373 (26%)
Query: 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQT 118
T+ L I + +LGN LV + V S +Q VTN ++V+ A AD L+G+
Sbjct: 11 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAAD--ILVGV----------- 57
Query: 119 VTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYM 178
+ IPF I +S + LF + C + +
Sbjct: 58 -----------------LAIPF-AIAISTGFCAACHGCLF-------------IACFVLV 86
Query: 179 TTTSINQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTAS-AIFMIPV 236
T S SIF L ++ DRY+A+ P+ L T +K + I W S AI + P+
Sbjct: 87 LTAS------SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM 140
Query: 237 IMYASIIDSENTKSCNIMWPET------ENLNGQSAFILYTFILGFAIPLVLIFVFYYLV 290
+ + + + K+ + E E++ + + + F +PL+L+ Y +
Sbjct: 141 LGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRI 200
Query: 291 I----RKLRTVG----PXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXXXXXXXXX 342
R+L+ + P K + ++ L +
Sbjct: 201 FLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFAL---------------- 244
Query: 343 XXXXXXXXXXXXXCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILY 402
CWLP I F P C + +++L A LS++NS +NP +Y
Sbjct: 245 -------------CWLPLHIINCFTFFCP--DCSHAPLWLMYL-AIVLSHTNSVVNPFIY 288
Query: 403 AFLSDNFKKSFLK 415
A+ F+++F K
Sbjct: 289 AYRIREFRQTFRK 301
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 356 CWLPYWITQIALIFTPPRQCQS-SITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFL 414
CWLP+++T + CQ+ ++ ++ L Y NSA+NP++Y + F+K+FL
Sbjct: 413 CWLPFFLTHVL-----NTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFL 467
Query: 415 KACTCA 420
K +C
Sbjct: 468 KILSCG 473
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 74/267 (27%)
Query: 37 NDTFNGTACPHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNL 96
N T A PH+ ++A LI+ I + GN LV VL+ +QT TN +V+L
Sbjct: 28 NSTGASQARPHA-----YYALSYCALILAI--VFGNGLVCMAVLKERALQTTTNYLVVSL 80
Query: 97 AIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVS 156
A+AD L+ T+ M V +L +T +
Sbjct: 81 AVAD--------LLVATLVMPWVV-------------------YLEVTGGV--------- 104
Query: 157 LFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIF-LTIMSADRYVAVCHPITAPNLRTP 215
W F + C +++ T + T+SI+ L +S DRY AV P+ +
Sbjct: 105 ----------WNFSRICCDVFV-TLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQ 153
Query: 216 FISKVVSFIAWTASAIFMIPVIMYASIIDSENTKS----CNIMWPETENLNGQSAFILYT 271
+ V+ + +A++++ + ++ NT C+I P+ F++Y+
Sbjct: 154 SSCRRVALM---ITAVWVLAFAVSCPLLFGFNTTGDPTVCSISNPD---------FVIYS 201
Query: 272 FILGFAIPL---VLIFVFYYLVIRKLR 295
++ F +P VL++ Y+V+++ R
Sbjct: 202 SVVSFYLPFGVTVLVYARIYVVLKQRR 228
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 125/317 (39%), Gaps = 69/317 (21%)
Query: 116 MQTVTNMYIVNLAIAD-ECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMC 174
+Q VTN ++V+LA AD ++ IPF IT+S + LF + C
Sbjct: 37 LQNVTNYFVVSLAAADIAVGVLAIPF-AITISTGFCAACHGCLF-------------IAC 82
Query: 175 KIYMTTTSINQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTAS-AIF 232
+ + T S SIF L ++ DRY+A+ P+ L T +K + I W S AI
Sbjct: 83 FVLVLTQS------SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 136
Query: 233 MIPVIMYASIIDSENTKSCNIMWPET------ENLNGQSAFILYTFILGFAIPLVLIFVF 286
+ P++ + + + K + E E++ + + + F +PL+L+
Sbjct: 137 LTPMLGWNNCGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 196
Query: 287 YYLVI----RKLRTVG----PXXXXXXXXXXXXXVTKLVLTVITLRTVGPXXXXXXXXXX 338
Y + R+L+ + P K + ++ L +
Sbjct: 197 YLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFAL------------ 244
Query: 339 XXXXXXXXXXXXXXXXXCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMN 398
CWLP I F P C + +++L A LS++NS +N
Sbjct: 245 -----------------CWLPLHIINCFTFFCP--DCSHAPLWLMYL-AIVLSHTNSVVN 284
Query: 399 PILYAFLSDNFKKSFLK 415
P +YA+ F+++F K
Sbjct: 285 PFIYAYRIREFRQTFRK 301
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIAD-ECFLIGIPF 109
T+ L I + +LGN LV + V S +Q VTN ++V+LA AD ++ IPF
Sbjct: 11 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF 62
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIAD-ECFLIGIPF 109
T+ L I + +LGN LV + V S +Q VTN ++V+LA AD ++ IPF
Sbjct: 36 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF 87
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLK 415
CWLP I F P C + +++L A LS++NS +NP +YA+ F+++F K
Sbjct: 366 CWLPLHIINCFTFFCP--DCSHAPLWLMYL-AIVLSHTNSVVNPFIYAYRIREFRQTFRK 422
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 32/190 (16%)
Query: 116 MQTVTNMYIVNLAIAD-ECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMC 174
+Q VTN ++V+LA AD ++ IPF IT+S + LF + C
Sbjct: 62 LQNVTNYFVVSLAAADIAVGVLAIPF-AITISTGFCAACHGCLF-------------IAC 107
Query: 175 KIYMTTTSINQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTAS-AIF 232
+ + T S SIF L ++ DRY+A+ P+ L T +K + I W S AI
Sbjct: 108 FVLVLTQS------SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 161
Query: 233 MIPVIMYASIIDSENTKSCNIMWPET------ENLNGQSAFILYTFILGFAIPLVLIFVF 286
+ P++ + + + K+ + E E++ + + + F +PL+L+
Sbjct: 162 LTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 221
Query: 287 Y---YLVIRK 293
Y +L R+
Sbjct: 222 YLRIFLAARR 231
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIAD-ECFLIGIPF 109
T+ L I + +LGN LV + V S +Q VTN ++V+LA AD ++ IPF
Sbjct: 26 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF 77
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLK 415
CWLP I F P C + +++L A LS++NS +NP +YA+ F+++F K
Sbjct: 407 CWLPLHIINCFTFFCP--DCSHAPLWLMYL-AIVLSHTNSVVNPFIYAYRIREFRQTFRK 463
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 32/190 (16%)
Query: 116 MQTVTNMYIVNLAIAD-ECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMC 174
+Q VTN ++V+LA AD ++ IPF IT+S + LF + C
Sbjct: 52 LQNVTNYFVVSLAAADIAVGVLAIPF-AITISTGFCAACHGCLF-------------IAC 97
Query: 175 KIYMTTTSINQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTAS-AIF 232
+ + T S SIF L ++ DRY+A+ P+ L T +K + I W S AI
Sbjct: 98 FVLVLTQS------SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 151
Query: 233 MIPVIMYASIIDSENTKSCNIMWPET------ENLNGQSAFILYTFILGFAIPLVLIFVF 286
+ P++ + + + K+ + E E++ + + + F +PL+L+
Sbjct: 152 LTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 211
Query: 287 Y---YLVIRK 293
Y +L R+
Sbjct: 212 YLRIFLAARR 221
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIG---IPF 109
T+ L I + +LGN LV + V S +Q VTN ++V+LA AD L+G IPF
Sbjct: 11 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD--ILVGVLAIPF 62
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLK 415
CWLP I F P C + +++L A L+++NS +NP +YA+ F+++F K
Sbjct: 245 CWLPLHIINCFTFFCP--DCSHAPLWLMYL-AIVLAHTNSVVNPFIYAYRIREFRQTFRK 301
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 187 TSSIFLTIMSADRYVAVCHPITA-PNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDS 245
T + ++ Y ++ P+T P L TP +++++FI+W P++ +I
Sbjct: 661 TQNFLSQVLGVQNYASIPQPMTDLPELDTPESARIIAFISWLREQRPFFPILY---VIRD 717
Query: 246 ENTKSCNIMWPETENLNGQSAFILYTFIL 274
E+ N + E+ +SA Y F+L
Sbjct: 718 ESPMKANFLQNMIED-RTESALSYYEFLL 745
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 187 TSSIFLTIMSADRYVAVCHPITA-PNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDS 245
T + ++ Y ++ P+T P L TP +++++FI+W P++ +I
Sbjct: 656 TQNFLSQVLGVQNYASIPQPMTDLPELDTPESARIIAFISWLREQRPFFPILY---VIAD 712
Query: 246 ENTKSCNIMWPETENLNGQSAFILYTFIL 274
E+ N + E+ +SA Y F+L
Sbjct: 713 ESPMKANFLQNMIED-RTESALSYYEFLL 740
>pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum
Length = 405
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 41 NGTACPHSTGPTLFFATQTIYL---IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVN 95
NGT + L F + Y+ IC +G T I+V+L F KM V +Y+ N
Sbjct: 72 NGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNVETLYVTN 129
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 356 CWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLK 415
CW P +I + + + C FL+ L NS NPI+Y + +++F++
Sbjct: 433 CWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVL---NSGTNPIIYTLTNKEMRRAFIR 489
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,432,689
Number of Sequences: 62578
Number of extensions: 387366
Number of successful extensions: 927
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 120
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)