Query psy15368
Match_columns 522
No_of_seqs 272 out of 2713
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 19:04:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 1.3E-47 2.7E-52 356.3 18.6 298 48-421 29-337 (423)
2 PHA03234 DNA packaging protein 100.0 5.3E-42 1.2E-46 334.0 23.5 277 51-418 29-315 (338)
3 PHA03235 DNA packaging protein 100.0 3.7E-41 8.1E-46 335.0 28.2 289 45-420 22-324 (409)
4 KOG4220|consensus 100.0 2.5E-43 5.5E-48 326.1 7.9 318 50-426 26-494 (503)
5 PHA02834 chemokine receptor-li 100.0 2.2E-39 4.8E-44 315.9 23.0 282 52-422 26-312 (323)
6 PHA02638 CC chemokine receptor 100.0 5.5E-38 1.2E-42 313.9 26.3 283 52-421 96-399 (417)
7 PHA03087 G protein-coupled che 100.0 2.4E-37 5.1E-42 304.8 24.7 287 51-423 37-327 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 1.3E-32 2.9E-37 260.4 17.5 255 71-402 1-257 (257)
9 KOG2087|consensus 99.9 1.3E-26 2.8E-31 214.3 7.2 286 50-419 20-306 (363)
10 PF10324 7TM_GPCR_Srw: Serpent 99.9 6.4E-21 1.4E-25 186.3 21.4 291 63-420 5-318 (318)
11 PF10320 7TM_GPCR_Srsx: Serpen 99.9 1.6E-21 3.5E-26 183.0 13.8 256 66-417 2-257 (257)
12 PF10328 7TM_GPCR_Srx: Serpent 99.8 2.7E-18 5.9E-23 163.6 17.0 269 63-416 2-272 (274)
13 PF10323 7TM_GPCR_Srv: Serpent 99.6 2.4E-15 5.3E-20 143.1 13.1 274 65-419 5-283 (283)
14 PF05462 Dicty_CAR: Slime mold 99.6 2.8E-13 6.1E-18 128.2 22.9 264 54-422 6-273 (303)
15 PF05296 TAS2R: Mammalian tast 99.6 1.7E-13 3.7E-18 131.4 19.4 287 53-421 5-303 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 99.5 5.3E-13 1.1E-17 127.2 19.3 272 53-423 31-311 (313)
17 PF10317 7TM_GPCR_Srd: Serpent 99.1 2.3E-09 4.9E-14 103.1 16.2 278 59-415 3-292 (292)
18 KOG4193|consensus 98.9 1.3E-07 2.7E-12 97.8 19.4 198 173-426 385-588 (610)
19 PF03402 V1R: Vomeronasal orga 98.9 8.8E-09 1.9E-13 95.1 9.3 246 84-413 6-263 (265)
20 PF11710 Git3: G protein-coupl 98.8 1.9E-07 4.2E-12 83.6 14.9 124 168-300 68-200 (201)
21 PF10292 7TM_GPCR_Srab: Serpen 98.8 5.9E-06 1.3E-10 80.6 25.8 287 57-418 19-305 (324)
22 PF02101 Ocular_alb: Ocular al 98.7 4.9E-06 1.1E-10 78.8 23.0 154 170-369 112-269 (405)
23 PF02118 Srg: Srg family chemo 98.7 6.8E-07 1.5E-11 85.5 17.1 264 62-412 5-274 (275)
24 PF10318 7TM_GPCR_Srh: Serpent 98.5 2.4E-05 5.1E-10 75.9 21.5 280 57-419 6-302 (302)
25 PF10327 7TM_GPCR_Sri: Serpent 98.5 3.3E-06 7.1E-11 81.3 15.1 276 56-412 10-302 (303)
26 PF10326 7TM_GPCR_Str: Serpent 98.4 6E-08 1.3E-12 94.3 1.0 275 61-414 5-307 (307)
27 KOG4564|consensus 98.4 2.1E-05 4.5E-10 78.1 18.2 269 59-421 149-421 (473)
28 PF10316 7TM_GPCR_Srbc: Serpen 98.3 1.9E-05 4.1E-10 74.0 14.8 124 54-221 5-128 (273)
29 PF04789 DUF621: Protein of un 98.2 0.00035 7.5E-09 63.4 18.6 201 173-415 89-294 (305)
30 PF10319 7TM_GPCR_Srj: Serpent 98.2 9.2E-05 2E-09 69.5 15.6 273 62-412 12-309 (310)
31 PF00002 7tm_2: 7 transmembran 98.1 8.9E-07 1.9E-11 82.9 1.9 131 58-240 4-134 (242)
32 PF03125 Sre: C. elegans Sre G 97.9 0.0057 1.2E-07 60.8 24.2 42 380-421 282-323 (365)
33 PF02117 7TM_GPCR_Sra: Serpent 97.9 0.0067 1.5E-07 59.1 23.1 116 54-209 20-136 (328)
34 PF01534 Frizzled: Frizzled/Sm 97.3 0.031 6.7E-07 54.0 18.4 170 53-258 7-176 (328)
35 PF10322 7TM_GPCR_Sru: Serpent 96.8 0.018 3.9E-07 55.1 12.1 155 171-355 100-258 (307)
36 PF11970 Git3_C: G protein-cou 96.3 0.0097 2.1E-07 43.7 5.0 70 335-408 3-73 (76)
37 KOG4289|consensus 96.0 0.22 4.8E-06 55.4 15.4 36 170-205 2222-2257(2531)
38 PF02076 STE3: Pheromone A rec 95.8 0.5 1.1E-05 44.8 15.4 81 172-254 57-141 (283)
39 PF06681 DUF1182: Protein of u 94.8 0.35 7.5E-06 42.4 10.0 39 170-208 113-151 (226)
40 PF03383 Serpentine_r_xa: Caen 92.4 0.091 2E-06 44.2 2.2 64 178-241 48-111 (153)
41 PF02175 7TM_GPCR_Srb: Serpent 92.1 9.2 0.0002 34.7 16.3 49 166-214 77-125 (236)
42 KOG4220|consensus 80.5 21 0.00046 35.3 10.7 81 336-416 141-227 (503)
43 PF06454 DUF1084: Protein of u 71.9 93 0.002 29.6 20.1 48 51-101 25-73 (281)
44 PHA03235 DNA packaging protein 61.0 1.4E+02 0.0029 30.3 12.1 39 382-420 290-328 (409)
45 KOG4219|consensus 59.1 1.1E+02 0.0024 30.4 10.3 18 115-132 65-82 (423)
46 KOG1056|consensus 48.1 3.4E+02 0.0073 30.4 12.8 46 53-98 557-609 (878)
47 PF10325 7TM_GPCR_Srz: Serpent 46.0 2.6E+02 0.0055 26.2 11.1 109 181-299 89-198 (267)
48 PF01102 Glycophorin_A: Glycop 44.3 29 0.00062 28.2 3.3 22 67-88 75-96 (122)
49 PF13853 7tm_4: Olfactory rece 42.6 3.1 6.7E-05 35.1 -2.6 80 219-298 4-88 (144)
50 PF05915 DUF872: Eukaryotic pr 40.6 1.8E+02 0.004 23.4 7.4 27 52-78 41-67 (115)
51 PF10329 DUF2417: Region of un 38.5 3.2E+02 0.0069 25.1 9.6 16 187-202 140-155 (232)
52 PF02932 Neur_chan_memb: Neuro 34.9 2.1E+02 0.0045 25.0 8.2 20 277-296 2-21 (237)
53 KOG4671|consensus 32.1 2.6E+02 0.0056 24.4 7.2 71 41-111 67-139 (201)
54 PF09726 Macoilin: Transmembra 31.9 48 0.001 36.0 3.7 31 203-233 10-44 (697)
55 PF00003 7tm_3: 7 transmembran 30.7 97 0.0021 28.4 5.2 25 170-194 52-76 (238)
56 PF14118 YfzA: YfzA-like prote 29.4 99 0.0021 23.6 3.8 23 4-26 19-41 (94)
57 KOG4193|consensus 25.7 3.9E+02 0.0084 28.7 9.0 46 54-99 319-364 (610)
58 PRK04989 psbM photosystem II r 24.0 1.1E+02 0.0024 18.6 2.6 25 266-290 5-29 (35)
59 PF05478 Prominin: Prominin; 23.8 3E+02 0.0064 30.8 8.1 32 340-371 457-488 (806)
60 TIGR03038 PS_II_psbM photosyst 23.3 1.2E+02 0.0027 18.1 2.7 25 266-290 5-29 (33)
61 COG3924 Predicted membrane pro 21.8 3.2E+02 0.0068 19.7 6.0 33 264-296 39-71 (80)
62 PF05151 PsbM: Photosystem II 20.8 2E+02 0.0043 17.0 3.9 24 267-290 6-29 (31)
63 PF09889 DUF2116: Uncharacteri 20.0 1E+02 0.0022 21.4 2.3 22 336-357 32-53 (59)
No 1
>KOG4219|consensus
Probab=100.00 E-value=1.3e-47 Score=356.29 Aligned_cols=298 Identities=25% Similarity=0.479 Sum_probs=251.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhh-ccchhheehhhccchhhhhhh
Q psy15368 48 STGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLI-GIPFLMITIKMQTVTNMYIVN 126 (522)
Q Consensus 48 ~~~~~~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l-~~p~~~~~~~~~~~~~~~~~~ 126 (522)
........+.++++.++.+++++||.+|++++..+|++|+.+|++|+|||+||++.++ ..++..
T Consensus 29 ~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f--------------- 93 (423)
T KOG4219|consen 29 VLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNF--------------- 93 (423)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHH---------------
Confidence 3345677889999999999999999999999999999999999999999999999754 455444
Q ss_pred hhhhhhhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy15368 127 LAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHP 206 (522)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P 206 (522)
.+.+...|.+|...|++..|+..+...+|++++++||+|||+||.||
T Consensus 94 ---------------------------------~yal~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~P 140 (423)
T KOG4219|consen 94 ---------------------------------QYALHQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHP 140 (423)
T ss_pred ---------------------------------HHHHHhccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhh
Confidence 33345899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccchhhhhHHHHHHHHHHHHHHhhheeEEccCC-----ccccccccCCCcccCcc-----chhhhHHHHHHH
Q psy15368 207 ITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSEN-----TKSCNIMWPETENLNGQ-----SAFILYTFILGF 276 (522)
Q Consensus 207 ~~~~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~-----~~~C~~~~~~~~~~~~~-----~~~~~~~~~~~~ 276 (522)
++.+ .+++...++++++|++++++++|..+...+..... ...|...|++.-..... ..|.....++.+
T Consensus 141 l~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqY 218 (423)
T KOG4219|consen 141 LQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQY 218 (423)
T ss_pred cccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHH
Confidence 9855 79999999999999999999999998876653332 47788888776222222 237888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhh
Q psy15368 277 AIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLC 356 (522)
Q Consensus 277 ~lp~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~ 356 (522)
++|++++...|..|.+++|..+....++. ++.+..+.++|+.||++++++.|.+|
T Consensus 219 flPliVl~~~Yt~iav~LW~~~~~gd~~d-------------------------~~~~~~kak~K~vkmliiVV~~Faic 273 (423)
T KOG4219|consen 219 FLPLIVLGLAYTVIAVTLWGRRIPGDQQD-------------------------RKHEQLKAKKKVVKMLIIVVVIFAIC 273 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhc-------------------------hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998664333322 12345577788999999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccccC
Q psy15368 357 WLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAA 421 (522)
Q Consensus 357 ~~P~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~~ 421 (522)
|+||.+..++....++ -.........+....||++.|+|.||+||++.|++||.++++.++|+.
T Consensus 274 WlPyh~y~il~~~~~~-i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp 337 (423)
T KOG4219|consen 274 WLPYHIYFILNATNPE-INRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP 337 (423)
T ss_pred ccChhHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence 9999999999876654 233455667888999999999999999999999999999999999886
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=5.3e-42 Score=333.97 Aligned_cols=277 Identities=18% Similarity=0.250 Sum_probs=212.6
Q ss_pred CchHHHHHHHHHHHHHHHhhhhHHHHHHhh--hccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhh
Q psy15368 51 PTLFFATQTIYLIICITGLLGNTLVIYVVL--RFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLA 128 (522)
Q Consensus 51 ~~~~~~~~~i~~ii~~~giigN~lvi~vi~--~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~ 128 (522)
+...++..+++.+++++|++||+++++++. +++++|+++|+|++|||+||+++++.+|+++.
T Consensus 29 ~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~---------------- 92 (338)
T PHA03234 29 KKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTL---------------- 92 (338)
T ss_pred HHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 346788899999999999999999999554 55667899999999999999999888887661
Q ss_pred hhhhhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy15368 129 IADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPIT 208 (522)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~ 208 (522)
. ....|.+|+..|++..++......+|++++++||+|||+||++|.+
T Consensus 93 --------------------------------~-~~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~ 139 (338)
T PHA03234 93 --------------------------------N-REALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKK 139 (338)
T ss_pred --------------------------------H-HhCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhh
Confidence 0 1256999999999999999999999999999999999999999988
Q ss_pred CCCCCCccchhhhhHHHHHHHHHHHHHHhhheeEEccCCc-cccccccCCCcccCccchhh---hHHHHHHHHHHHHHHH
Q psy15368 209 APNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENT-KSCNIMWPETENLNGQSAFI---LYTFILGFAIPLVLIF 284 (522)
Q Consensus 209 ~~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~~-~~C~~~~~~~~~~~~~~~~~---~~~~~~~~~lp~~ii~ 284 (522)
++. ++++....++++|+.+++.++|.+........+.. ..|...++..+ ....+. .....+++++|++++.
T Consensus 140 ~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~---~~~~~~~~~~~~~~~~f~iPl~im~ 214 (338)
T PHA03234 140 NDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKK---AYDLFIAIKIVFCFIWGIFPTMIFS 214 (338)
T ss_pred hhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcch---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 33444556667799999999998876554333322 56877664321 111221 1223445789999999
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHH
Q psy15368 285 VFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQ 364 (522)
Q Consensus 285 ~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~ 364 (522)
++|.+|.+.++++. .++++|.+|++++++++|++||+||.+..
T Consensus 215 ~cY~~I~~~L~~~~-------------------------------------~~~~~k~~k~i~~vv~vF~iCWlPy~iv~ 257 (338)
T PHA03234 215 FFYVIFCKALHALT-------------------------------------EKKHKKTLFFIRILILSFLCIQIPNIAIL 257 (338)
T ss_pred HHHHHHHHHHHhhh-------------------------------------hhhhhhhhhHHHHHHHHHHHHHhHHHHHH
Confidence 99999999987621 13347899999999999999999999987
Q ss_pred HHHHhcC---CCCCCC-chhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHcc
Q psy15368 365 IALIFTP---PRQCQS-SITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACT 418 (522)
Q Consensus 365 i~~~~~~---~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~ 418 (522)
++..... ...+.. ........++..++++||++||+||++.+++||++++++++
T Consensus 258 l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~ 315 (338)
T PHA03234 258 ICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQ 315 (338)
T ss_pred HHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 7654321 111111 12334567888999999999999999999999999887553
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=3.7e-41 Score=335.05 Aligned_cols=289 Identities=19% Similarity=0.271 Sum_probs=214.6
Q ss_pred CCCCCC-CchHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccc--ccchhhHHHHHhhhhhhhhhccchhheehhhccchh
Q psy15368 45 CPHSTG-PTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKM--QTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTN 121 (522)
Q Consensus 45 ~~~~~~-~~~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~l--r~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~ 121 (522)
|+..++ ...+.+..+++.+++++|++||+++++++.++++. ++.+++|++|||++|++.++++|+.+.
T Consensus 22 c~~~~~~~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~i~--------- 92 (409)
T PHA03235 22 CVPTEGLSAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFIML--------- 92 (409)
T ss_pred CCchhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 444332 44677899999999999999999999986543332 356789999999999987777776651
Q ss_pred hhhhhhhhhhhhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15368 122 MYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYV 201 (522)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ 201 (522)
. ....|..|+..|++..++...+..+|++++++||+|||+
T Consensus 93 ---------------------------------------~-~~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~ 132 (409)
T PHA03235 93 ---------------------------------------S-NQGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYR 132 (409)
T ss_pred ---------------------------------------h-cCccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012234457899999999999999999999999999999
Q ss_pred HhhhcCCCCCCCCccchhhhhHHHHHHHHHHHHHHhhheeEE-----c--cCCccccccccCCCcccCccchhhhHHHHH
Q psy15368 202 AVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASII-----D--SENTKSCNIMWPETENLNGQSAFILYTFIL 274 (522)
Q Consensus 202 aI~~P~~~~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~-----~--~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ 274 (522)
+|++|.+++. .+++++.++++++|++++++++|...+.... . ......|...+..+........|.....++
T Consensus 133 aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~ 211 (409)
T PHA03235 133 VIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLV 211 (409)
T ss_pred HeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHH
Confidence 9999986544 4688899999999999999999865443211 1 112345866544321101122455566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHH
Q psy15368 275 GFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYV 354 (522)
Q Consensus 275 ~~~lp~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~ 354 (522)
.+++|+++++++|.+|++++|++.+ ++++|..+++++++++|+
T Consensus 212 ~f~iPl~im~~~Y~~I~~~l~~~~~-------------------------------------~~~~k~~~~v~iivv~F~ 254 (409)
T PHA03235 212 WGIAPVVMMTWFYTFFYRTLKRASY-------------------------------------KKRSRTLTFVCILLLSFL 254 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-------------------------------------hcchhhhhhHHHHHHHHH
Confidence 8999999999999999999987421 123466788888999999
Q ss_pred hhhhhHHHHHHHHHhcCC----CCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHcccc
Q psy15368 355 LCWLPYWITQIALIFTPP----RQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCA 420 (522)
Q Consensus 355 i~~~P~~i~~i~~~~~~~----~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~ 420 (522)
+||+||.+..++..+... ..........+..+..++.++|+++||+||++++++||+++++++++.
T Consensus 255 iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~ 324 (409)
T PHA03235 255 CLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE 324 (409)
T ss_pred HHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence 999999999887654321 111122234567788899999999999999999999999999988653
No 4
>KOG4220|consensus
Probab=100.00 E-value=2.5e-43 Score=326.14 Aligned_cols=318 Identities=24% Similarity=0.381 Sum_probs=250.4
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhh-ccchhheehhhccchhhhhhhhh
Q psy15368 50 GPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLI-GIPFLMITIKMQTVTNMYIVNLA 128 (522)
Q Consensus 50 ~~~~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l-~~p~~~~~~~~~~~~~~~~~~~~ 128 (522)
..+..++++++..+++++.++||++|++.+..+|+|++..|+||.+||+|||+.|+ ++|+..
T Consensus 26 ~~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t----------------- 88 (503)
T KOG4220|consen 26 ETWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYT----------------- 88 (503)
T ss_pred cceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHH-----------------
Confidence 34566778889999999999999999999999999999999999999999999865 455544
Q ss_pred hhhhhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy15368 129 IADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPIT 208 (522)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~ 208 (522)
.+-+-+.|++|..+|.+...+.++...+|++.+++|++|||..|.+|+.
T Consensus 89 -------------------------------~Y~lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLt 137 (503)
T KOG4220|consen 89 -------------------------------TYTLMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLT 137 (503)
T ss_pred -------------------------------HHHHHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeeccccc
Confidence 2223489999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhhhhHHHHHHHHHHHHHHhhheeEEccC---CccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHH
Q psy15368 209 APNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSE---NTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFV 285 (522)
Q Consensus 209 ~~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~---~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~ 285 (522)
|+...|.+++..+|+..|++++++-.|.++++.+.... ....|..++-+. .++.+...+..|-+|..+|.+
T Consensus 138 YrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsn------p~iTfGTAiAAFYlPVtiM~~ 211 (503)
T KOG4220|consen 138 YRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSN------PAITFGTAIAAFYLPVTIMTI 211 (503)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecC------ceeehhHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999988887665433 236798887553 255666778888999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhc-------------------cccc------------------------------c---
Q psy15368 286 FYYLVIRKLRTVGPKNKPKEKKK-------------------SHRK------------------------------V--- 313 (522)
Q Consensus 286 ~y~~I~~~lr~~~~~~~~~~~~~-------------------~~~~------------------------------~--- 313 (522)
+|.+|++..+++.+......... +.+. .
T Consensus 212 LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~ 291 (503)
T KOG4220|consen 212 LYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPLTNGCISNSKAPSLTPTESWKPSE 291 (503)
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccccccCCCCccccccCcccCCccCCCCcc
Confidence 99999999987644333211110 0000 0
Q ss_pred ---ceee--------------------------eE-------------------EeE-----eee---------------
Q psy15368 314 ---TKLV--------------------------LT-------------------VIT-----LRT--------------- 325 (522)
Q Consensus 314 ---~~~~--------------------------~~-------------------~~~-----~~~--------------- 325 (522)
++.. .. ... ...
T Consensus 292 ~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~n 371 (503)
T KOG4220|consen 292 KEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQMLPKSDSCVPIFSATDTDKTTDTN 371 (503)
T ss_pred ccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccccccCCCCCCcccccccccccccCCccC
Confidence 0000 00 000 000
Q ss_pred --cCCCC-------------------------CchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCCCCCc
Q psy15368 326 --VGPKN-------------------------KPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSS 378 (522)
Q Consensus 326 --~~~~~-------------------------~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~~~~~ 378 (522)
.+..+ +++....+|+|++|++.+|.+.|++||+||.++.++..+..+ .
T Consensus 372 s~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~-----C 446 (503)
T KOG4220|consen 372 SGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKN-----C 446 (503)
T ss_pred ccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhccc-----c
Confidence 00000 001112688999999999999999999999999999988754 4
Q ss_pred hhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccccCCCCcc
Q psy15368 379 ITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAAGKDVN 426 (522)
Q Consensus 379 ~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~~~~~~~ 426 (522)
.+..++.+..+|.|+||-+||+.|.++|+.||+.+++++.|++++...
T Consensus 447 iP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~~~ 494 (503)
T KOG4220|consen 447 IPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKKRRT 494 (503)
T ss_pred cchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeecccch
Confidence 566789999999999999999999999999999999999999877643
No 5
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=315.92 Aligned_cols=282 Identities=27% Similarity=0.489 Sum_probs=213.6
Q ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhh
Q psy15368 52 TLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIAD 131 (522)
Q Consensus 52 ~~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 131 (522)
....+..+++.+++++|++||+++++++.++++ +++.|++++|||+||++.++++|+.+.
T Consensus 26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~~~~lP~~i~------------------- 85 (323)
T PHA02834 26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLMLVFSFPFIIH------------------- 85 (323)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHHHHHHHHHHH-------------------
Confidence 346678899999999999999999999887655 467899999999999987667776541
Q ss_pred hhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy15368 132 ECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPN 211 (522)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~ 211 (522)
. ..++|.+|+..|++..++...+..+|++++++||+|||++|++|++++.
T Consensus 86 -----------------------------~-~~~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~ 135 (323)
T PHA02834 86 -----------------------------N-DLNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN 135 (323)
T ss_pred -----------------------------H-HcCCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC
Confidence 0 1246999999999999999999999999999999999999999998754
Q ss_pred CCCccchhhhhHHHHHHHHHHHHHHhhheeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15368 212 LRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVI 291 (522)
Q Consensus 212 ~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~ 291 (522)
. +.+++...++.+|+.+++.++|.+.+...........|.......+ ......+.....++.+++|+++++++|.+|+
T Consensus 136 ~-~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~ 213 (323)
T PHA02834 136 K-SISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHEN-FSWSAFFNFEINIFGIVIPLIILIYCYSKIL 213 (323)
T ss_pred C-ccchHHHHHHHHHHHHHHHHhhHHHHHHhccCCCceEEeccCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4566777888999999999999876544333333346763322111 0111122333457789999999999999999
Q ss_pred HHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcC
Q psy15368 292 RKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTP 371 (522)
Q Consensus 292 ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~ 371 (522)
+.+|++.+ ++++|.+|++++++++|++||+|+.+..++..+.+
T Consensus 214 ~~l~~~~~-------------------------------------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~ 256 (323)
T PHA02834 214 YTLKNCKN-------------------------------------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQS 256 (323)
T ss_pred HHHHhccC-------------------------------------cccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99987421 12357789999999999999999999988765532
Q ss_pred CCCCC---C--chhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccccCC
Q psy15368 372 PRQCQ---S--SITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAAG 422 (522)
Q Consensus 372 ~~~~~---~--~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~~~ 422 (522)
.+... . ........+..++.++|+++||+||++++++||++++++++|..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~~ 312 (323)
T PHA02834 257 VGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTNN 312 (323)
T ss_pred hcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhhh
Confidence 21111 0 111123457788999999999999999999999999998876554
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=5.5e-38 Score=313.90 Aligned_cols=283 Identities=28% Similarity=0.509 Sum_probs=221.2
Q ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhh
Q psy15368 52 TLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIAD 131 (522)
Q Consensus 52 ~~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 131 (522)
.......+++.+++++|++||+++++++.+ |++|++.+++++|||++|+++++.+|+++.
T Consensus 96 ~~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l~lPf~i~------------------- 155 (417)
T PHA02638 96 SISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVIDFPFIIY------------------- 155 (417)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 356678889999999999999999988655 788999999999999999998888887761
Q ss_pred hhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy15368 132 ECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPN 211 (522)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~ 211 (522)
. ..++|.+|+..|++..++......++++.++++++|||+||+||.++++
T Consensus 156 -----------------------------~-~~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~ 205 (417)
T PHA02638 156 -----------------------------N-EFDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQK 205 (417)
T ss_pred -----------------------------H-HhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 1 1257999999999999999999999999999999999999999999888
Q ss_pred CCCccchhhhhHHHHHHHHHHHHHHhhheeEE-------ccC---CccccccccCCCcc--cCccchhhhHHHHHHHHHH
Q psy15368 212 LRTPFISKVVSFIAWTASAIFMIPVIMYASII-------DSE---NTKSCNIMWPETEN--LNGQSAFILYTFILGFAIP 279 (522)
Q Consensus 212 ~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~-------~~~---~~~~C~~~~~~~~~--~~~~~~~~~~~~~~~~~lp 279 (522)
..+++...++++++|+++++.++|.++..+.. +.+ ....|...++.... ......+.....++++++|
T Consensus 206 ~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lP 285 (417)
T PHA02638 206 YRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIP 285 (417)
T ss_pred eecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 87888888889999999999999987754322 111 13467655433210 0001123334456778999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhh
Q psy15368 280 LVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLP 359 (522)
Q Consensus 280 ~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P 359 (522)
++++++||.+|++++++.++ ++++|.+|++++++++|++||+|
T Consensus 286 l~vmi~cY~~I~~~L~~~~~-------------------------------------~~k~k~~rli~~ivi~f~lcW~P 328 (417)
T PHA02638 286 IIIFAFCYIKIILKLKQLKK-------------------------------------SKKTKSIIIVSIIIICSLICWIP 328 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhc-------------------------------------cccchhhhhHHHHHHHHHHHHhh
Confidence 99999999999999976321 22356689999999999999999
Q ss_pred HHHHHHHHHhcCC---------CCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccccC
Q psy15368 360 YWITQIALIFTPP---------RQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAA 421 (522)
Q Consensus 360 ~~i~~i~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~~ 421 (522)
+.+..++..+... ..+..........+...++++|+|+||+||++.+++||+++++++++..
T Consensus 329 y~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~ 399 (417)
T PHA02638 329 LNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF 399 (417)
T ss_pred HHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence 9999888765321 1111112334566788999999999999999999999999999886554
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=304.79 Aligned_cols=287 Identities=27% Similarity=0.493 Sum_probs=229.1
Q ss_pred CchHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhh
Q psy15368 51 PTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIA 130 (522)
Q Consensus 51 ~~~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~ 130 (522)
.....+..+++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++..|+.+
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~------------------- 96 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQI------------------- 96 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHH-------------------
Confidence 34566788899999999999999999998887 8899999999999999998777665544
Q ss_pred hhhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy15368 131 DECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAP 210 (522)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~ 210 (522)
......+|..++..|++..++...+..+|++++++||+|||++|++|++|+
T Consensus 97 -----------------------------~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~ 147 (335)
T PHA03087 97 -----------------------------YYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSN 147 (335)
T ss_pred -----------------------------HHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 112347788899999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhHHHHHHHHHHHHHHhhheeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15368 211 NLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLV 290 (522)
Q Consensus 211 ~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I 290 (522)
...+++++.++++++|+++++.++|.+.+...........|...+..... .....+.+...++.+++|+++++++|.++
T Consensus 148 ~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~~lP~~ii~~~y~~i 226 (335)
T PHA03087 148 KINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMFYNNKTM-NWKLFINFEINIIGMLIPLTILLYCYSKI 226 (335)
T ss_pred cccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceEEecCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887776655566678777653211 11112223345667899999999999999
Q ss_pred HHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhc
Q psy15368 291 IRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFT 370 (522)
Q Consensus 291 ~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~ 370 (522)
++.++++.+ +++++|..|++.+++++|++||+|+.+..++....
T Consensus 227 ~~~l~~~~~------------------------------------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~ 270 (335)
T PHA03087 227 LITLKGINK------------------------------------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLH 270 (335)
T ss_pred HHHHHhccc------------------------------------chhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998876421 13446889999999999999999999887765432
Q ss_pred C---CC-CCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccccCCC
Q psy15368 371 P---PR-QCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAAGK 423 (522)
Q Consensus 371 ~---~~-~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~~~~ 423 (522)
. .. ............+..++..+|+++||+||++++++||+++++.++....+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~~ 327 (335)
T PHA03087 271 ILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTS 327 (335)
T ss_pred HhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhhc
Confidence 1 11 11112233455678889999999999999999999999999998755543
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=100.00 E-value=1.3e-32 Score=260.43 Aligned_cols=255 Identities=29% Similarity=0.618 Sum_probs=213.5
Q ss_pred hhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhhhhhhcccceeeehhhhhh
Q psy15368 71 GNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYW 150 (522)
Q Consensus 71 gN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (522)
||+++++++.++|++|++.+++++|||++|++.++..++..+.
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~------------------------------------- 43 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIY------------------------------------- 43 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHH-------------------------------------
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccc-------------------------------------
Confidence 8999999999999999999999999999999987755444310
Q ss_pred hHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhhhHHHHHHHH
Q psy15368 151 HYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASA 230 (522)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~~~~~~i~~~Wi~s~ 230 (522)
....+.|..++..|++..++..++...+.++++++++|||++|++|++|++..+++++..+++++|++++
T Consensus 44 ----------~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~ 113 (257)
T PF00001_consen 44 ----------SLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISF 113 (257)
T ss_dssp ----------HHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ----------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0011678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhheeEEccC-C-ccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhc
Q psy15368 231 IFMIPVIMYASIIDSE-N-TKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKK 308 (522)
Q Consensus 231 ~~~~p~~~~~~~~~~~-~-~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~~~~~~~~~~~~~ 308 (522)
++++|........... . ...|..+..... ...+.....++.+++|+++++++|.++++.+|++.++.+.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~- 188 (257)
T PF00001_consen 114 LISLPPLFFSWVYFVSDGSQSFCFIDFSSSS----SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSS- 188 (257)
T ss_dssp HHHHHHHHTCEEEEESTCCCEEEEESCSSSH----HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSH-
T ss_pred ccccccccccccccccccccccccccccccc----cccccccccccccccceeeeeeeccccccccccccccccccccc-
Confidence 9999987664433322 2 467888765542 34677788888999999999999999999999987766654321
Q ss_pred cccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q psy15368 309 SHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAG 388 (522)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 388 (522)
..+++.++++|.++++.+++++|++||+|+.+..++....+... . .......+..
T Consensus 189 ----------------------~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~--~-~~~~~~~~~~ 243 (257)
T PF00001_consen 189 ----------------------SSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSS--L-ISSILFYISY 243 (257)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTST--C-SHHHHHHHHH
T ss_pred ----------------------ccccccccccccccccccccccccccCCceeHHHHHHHHcCccc--h-hhHHHHHHHH
Confidence 23455688999999999999999999999999999998887652 2 5677889999
Q ss_pred HHHhhccchhHHHH
Q psy15368 389 ALSYSNSAMNPILY 402 (522)
Q Consensus 389 ~l~~~ns~~NPiIY 402 (522)
++.++|+++||+||
T Consensus 244 ~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 244 FLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcEEC
Confidence 99999999999999
No 9
>KOG2087|consensus
Probab=99.93 E-value=1.3e-26 Score=214.32 Aligned_cols=286 Identities=16% Similarity=0.196 Sum_probs=211.4
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhh
Q psy15368 50 GPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAI 129 (522)
Q Consensus 50 ~~~~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~ 129 (522)
+..-..++.+..++++.++++||++|+......+...++..++++|||+||+++++.+... +.
T Consensus 20 dllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~i-----------------a~ 82 (363)
T KOG2087|consen 20 DLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLI-----------------AS 82 (363)
T ss_pred HhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHH-----------------HH
Confidence 3444566778889999999999999999988877777899999999999999887643222 12
Q ss_pred hhhhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy15368 130 ADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITA 209 (522)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~ 209 (522)
.|. ... ..+.....|..+...|++.+|+..++...|++.++.+++||++.|.+|++-
T Consensus 83 vD~-----------~~~------------gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~ 139 (363)
T KOG2087|consen 83 VDA-----------KTR------------GEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRL 139 (363)
T ss_pred hhH-----------HHH------------HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccC
Confidence 220 000 011112345556667999999999999999999999999999999999998
Q ss_pred CCCCCccchhhhhHHHHHHHHHHHH-HHhhheeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHH
Q psy15368 210 PNLRTPFISKVVSFIAWTASAIFMI-PVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYY 288 (522)
Q Consensus 210 ~~~~t~~~~~~~i~~~Wi~s~~~~~-p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~ 288 (522)
.+....+....+++..|+.+++.++ |.+.... ......|.....++.. ..-|....++....+.++++.++|+
T Consensus 140 ~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~---Y~~~~vClPL~~~~~~---s~g~y~~~~l~~N~lafiiia~~Y~ 213 (363)
T KOG2087|consen 140 DRKAKLRPLVLILLLGWLFAFLMALLPLFGISS---YGASSVCLPLHIEEPL---STGYYLVALLGLNLLAFIIIAFSYG 213 (363)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHhccccCCCC---CcccceeeecccCCcc---chhHHHHHHHHHHHHHHHHHHHHhh
Confidence 8877777799999999999999954 5554222 2333668665444422 2215566777778899999999999
Q ss_pred HHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHH
Q psy15368 289 LVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALI 368 (522)
Q Consensus 289 ~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~ 368 (522)
+++..+++....... ...+.+|-+..++.+-++||.|-.++.+...
T Consensus 214 ~iy~~l~~~~~~~~~----------------------------------~~~~~akr~a~LvfTd~icw~Pi~f~~~~al 259 (363)
T KOG2087|consen 214 KIYCSLRKGDLSATL----------------------------------ISTSVAKRMAFLVFTDCICWCPIAFFKFSAL 259 (363)
T ss_pred hhheeeecCCCcccc----------------------------------chhhhhhCeeEEEEccccccCchheeeeHHh
Confidence 999988873322111 1146778888899999999999999988877
Q ss_pred hcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccc
Q psy15368 369 FTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTC 419 (522)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c 419 (522)
...+-.. .....++.....-+|+++||++|.++++.||+.++.++..
T Consensus 260 ~~~~li~----~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k 306 (363)
T KOG2087|consen 260 IGVELIS----VSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSK 306 (363)
T ss_pred cCCcccC----hhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhh
Confidence 7654211 1112234445667899999999999999999999887653
No 10
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.87 E-value=6.4e-21 Score=186.30 Aligned_cols=291 Identities=21% Similarity=0.293 Sum_probs=209.1
Q ss_pred HHHHHHhhhhHHHHHHhhhcccccc-chhhHHHHHhhhhhhhhhc-cchhheehhhccchhhhhhhhhhhhhhhhhcccc
Q psy15368 63 IICITGLLGNTLVIYVVLRFSKMQT-VTNMYIVNLAIADECFLIG-IPFLMITIKMQTVTNMYIVNLAIADECFLIGIPF 140 (522)
Q Consensus 63 ii~~~giigN~lvi~vi~~~~~lr~-~~~~~l~~LaiaDll~~l~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (522)
+++++|+++|++.++++.| |.+|+ +.|.++..+|++|++..+. ++.........
T Consensus 5 ~~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~----------------------- 60 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIF----------------------- 60 (318)
T ss_pred EEeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------------
Confidence 4578999999999999765 67786 7899999999999986542 22222000000
Q ss_pred eeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC--CCCCccch
Q psy15368 141 LMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAP--NLRTPFIS 218 (522)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~--~~~t~~~~ 218 (522)
...................+...+...+...|.|..++||+.|+++|.+|+..+ ++.+++.+
T Consensus 61 ----------------~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~ 124 (318)
T PF10324_consen 61 ----------------YEDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFA 124 (318)
T ss_pred ----------------ccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCee
Confidence 000000001111222334556788889999999999999999999999998764 56788888
Q ss_pred hhhhHHHHHHHHHHHHHHhhheeEEccC----Ccccccccc---CCCccc------------CccchhhhHHHHHHHHHH
Q psy15368 219 KVVSFIAWTASAIFMIPVIMYASIIDSE----NTKSCNIMW---PETENL------------NGQSAFILYTFILGFAIP 279 (522)
Q Consensus 219 ~~~i~~~Wi~s~~~~~p~~~~~~~~~~~----~~~~C~~~~---~~~~~~------------~~~~~~~~~~~~~~~~lp 279 (522)
..++.++++++.+...+.++..+..+.+ ....|.... ....+. .....+.+...++.-++|
T Consensus 125 ~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP 204 (318)
T PF10324_consen 125 IIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIP 204 (318)
T ss_pred eeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhh
Confidence 8899999999999999988776665433 234576111 111100 001123333344457899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhh
Q psy15368 280 LVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLP 359 (522)
Q Consensus 280 ~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P 359 (522)
.++..++.+.+++.+|+.++++++..++ +.+++.+.+++++.+++.|+++.+|
T Consensus 205 ~il~~ilti~Li~~Lrk~~~~r~~~~~~---------------------------~~~~~~~tt~li~~~ti~f~i~e~p 257 (318)
T PF10324_consen 205 CILLPILTILLIIELRKAKKRRKKLSSS---------------------------KSKKSDRTTKLILFMTISFLISELP 257 (318)
T ss_pred HHHHHHHHHHHHHHHHhccHhhhccccc---------------------------ccccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877766554422 1356678999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHcccc
Q psy15368 360 YWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCA 420 (522)
Q Consensus 360 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~ 420 (522)
..+..++.....+..........+..+...+..+|++.|++||++++.+||++++++++|+
T Consensus 258 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k 318 (318)
T PF10324_consen 258 QGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK 318 (318)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence 9999999887554443455556678889999999999999999999999999999999984
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.87 E-value=1.6e-21 Score=183.02 Aligned_cols=256 Identities=20% Similarity=0.289 Sum_probs=181.4
Q ss_pred HHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhhhhhhcccceeeeh
Q psy15368 66 ITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITM 145 (522)
Q Consensus 66 ~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (522)
++|++||..+++++.++|++|+|.+++++.+|++|++.++...+.....
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~------------------------------- 50 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL------------------------------- 50 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH-------------------------------
Confidence 5799999999999999999999999999999999998766432222000
Q ss_pred hhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhhhHHH
Q psy15368 146 SISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIA 225 (522)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~~~~~~i~~~ 225 (522)
. +........|-...+...++..+....+++|++||++||+.|++|+.+.+++.........
T Consensus 51 -----------------~-~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~ 112 (257)
T PF10320_consen 51 -----------------F-RDHQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFP 112 (257)
T ss_pred -----------------H-hheeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHH
Confidence 0 1123345679999999999999999999999999999999999999998887444443433
Q ss_pred HHHHHHHHHHHhhheeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh
Q psy15368 226 WTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKE 305 (522)
Q Consensus 226 Wi~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~~~~~~~~~~ 305 (522)
.+.+.... .+ .....+++....|.+..... ...+.++.... ++..+++++.|...+..++++.++
T Consensus 113 ~~~s~~~~--~~-~~~~~~~~~~~~C~pp~a~~-----~~~~~~~~~~~--~~inv~tvivY~i~~~~~~~k~~~----- 177 (257)
T PF10320_consen 113 VIYSIFFT--VI-GFLYRDDETIVICNPPLAFH-----GTASQIWSYSN--IIINVITVIVYIITIIIFKRKSRS----- 177 (257)
T ss_pred HHHHHHHH--hh-eeEecCCcccccCCCccccC-----ccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc-----
Confidence 33333322 11 12222333457787765443 22333333332 222355667777777777765443
Q ss_pred hhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCCCCCchhHHHHH
Q psy15368 306 KKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFL 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~~~~~~~~~~~~ 385 (522)
..++++|..|.+.+.++.|+++|.-..+...+......+ .+....+..
T Consensus 178 -----------------------------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~---~~~~~~i~~ 225 (257)
T PF10320_consen 178 -----------------------------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLD---GETIAIIQM 225 (257)
T ss_pred -----------------------------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCc---HHHHHHHHH
Confidence 124567888999999999999998877776665544331 233445677
Q ss_pred HHHHHHhhccchhHHHHHHcChHHHHHHHHHc
Q psy15368 386 IAGALSYSNSAMNPILYAFLSDNFKKSFLKAC 417 (522)
Q Consensus 386 ~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~ 417 (522)
...++..++.+.|.+||.++|+|||+++++++
T Consensus 226 ~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 226 YAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 77899999999999999999999999999875
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.79 E-value=2.7e-18 Score=163.63 Aligned_cols=269 Identities=12% Similarity=0.168 Sum_probs=184.4
Q ss_pred HHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhhhhhhccccee
Q psy15368 63 IICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLM 142 (522)
Q Consensus 63 ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (522)
+++++|++.|.++++.+.+.+++|++.+++..+.|++|.+.++...++.... ..
T Consensus 2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~--------------------------~~ 55 (274)
T PF10328_consen 2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPM--------------------------TL 55 (274)
T ss_pred eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------hh
Confidence 3578999999999999999999999999999999999998766433322000 00
Q ss_pred eehhhhhhhHHhhhHhhhcccCCccccccc-cchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhh
Q psy15368 143 ITMSISYWHYILVSLFRVASLSSYWPFGDL-MCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVV 221 (522)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~~~~~~ 221 (522)
. +.-..... .-.+.+.....+...+.++.++||++|++||+.|.+|+++.+.+.+..+
T Consensus 56 --------------------~-~~~~~~~~~~s~~~g~~~~~~y~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~ 114 (274)
T PF10328_consen 56 --------------------L-DISFLPSSLNSIIFGFIGMFCYFIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIIL 114 (274)
T ss_pred --------------------c-ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehh
Confidence 0 00011111 1234477888888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhh-eeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15368 222 SFIAWTASAIFMIPVIMY-ASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPK 300 (522)
Q Consensus 222 i~~~Wi~s~~~~~p~~~~-~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~~~~~ 300 (522)
++++|++++....+.... ......+....-. .++.+ .....+..........+-.+++..++..++.++++.+++
T Consensus 115 i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~-~~~~~---~~C~~~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~ 190 (274)
T PF10328_consen 115 IAFIWLLSIIISTILYFPDGCYFYYDPETWSW-SYPTD---PPCGNYSWYFDFYKNFILVIISNILNIITFIKLRKFRKK 190 (274)
T ss_pred hhHHHHHHHHHHHHhhhcCCCcceeccceeee-ecCCC---CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999776655443 2222111111111 11111 111223333333334444567778888888888876665
Q ss_pred CCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCCCCCchh
Q psy15368 301 NKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSIT 380 (522)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~~~~~~~ 380 (522)
..... ...++++|+|.+..+......++|++.++-+.+..-+ . +..
T Consensus 191 ~~~~~------------------------~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~---~-------~~~ 236 (274)
T PF10328_consen 191 ISVSS------------------------SESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL---S-------SNR 236 (274)
T ss_pred ccccc------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-------ccc
Confidence 51111 1235667889999999999999999998887776443 1 112
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHH
Q psy15368 381 VIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKA 416 (522)
Q Consensus 381 ~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~ 416 (522)
.+.+........+.+++|++|+..+|+|+|+.+++.
T Consensus 237 ~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~ 272 (274)
T PF10328_consen 237 WWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKK 272 (274)
T ss_pred HHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhc
Confidence 234445555567778899999999999999998774
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.63 E-value=2.4e-15 Score=143.08 Aligned_cols=274 Identities=14% Similarity=0.237 Sum_probs=176.4
Q ss_pred HHHHhhhhHHHHHHhhhccc----cccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhhhhhhcccc
Q psy15368 65 CITGLLGNTLVIYVVLRFSK----MQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPF 140 (522)
Q Consensus 65 ~~~giigN~lvi~vi~~~~~----lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (522)
+++.++--+.+++++.+.|+ ++++.+-++.+-++||++..+..-+....-..+- .+
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~-~~------------------- 64 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGF-FN------------------- 64 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HH-------------------
Confidence 44566777788887777554 4578899999999999986542211110000000 00
Q ss_pred eeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCCccchh
Q psy15368 141 LMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPI-TAPNLRTPFISK 219 (522)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~-~~~~~~t~~~~~ 219 (522)
. .. ...++..-++.....+..........+++|++||.+|++|. ++++..++.+..
T Consensus 65 -------~-----------f~-----~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~ 121 (283)
T PF10323_consen 65 -------D-----------FY-----FSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIW 121 (283)
T ss_pred -------H-----------HH-----HHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchh
Confidence 0 00 01112224556666777778888889999999999999999 888888998999
Q ss_pred hhhHHHHHHHHHHHHHHhhheeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy15368 220 VVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGP 299 (522)
Q Consensus 220 ~~i~~~Wi~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~~~~ 299 (522)
.++++-|+.++++++|.+............ .....+. . ..............+-++..+++|..++..+|++.+
T Consensus 122 ~i~~i~wi~p~li~~~~~~~~~~~f~~~~~--~~~~~d~---~-~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k 195 (283)
T PF10323_consen 122 IIILIQWIPPLLISLPFFFDTDFYFDNEEN--MSLFVDP---E-FIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK 195 (283)
T ss_pred heeeeeehhhhhheeeeeccCceeeecccc--eeeecCH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999966655444333222 1111111 1 112222333444566678899999999999998764
Q ss_pred CCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCCCCCch
Q psy15368 300 KNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSI 379 (522)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~~~~~~ 379 (522)
...+ +.++++++|.+.+.+..+.++++++... +++.........+ ...
T Consensus 196 ~~s~---------------------------~~s~~~~rE~~L~~~~~i~~~a~~~~~~-~~~~~~~~~~~~~----~~~ 243 (283)
T PF10323_consen 196 KKSK---------------------------SSSRSRRREIRLAIQVFILFCAFFVILV-YYIFSNYFAQNFN----TDP 243 (283)
T ss_pred hhhH---------------------------hhhhhhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc----chH
Confidence 1111 1235568888988888777766555433 3333333222222 111
Q ss_pred hHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccc
Q psy15368 380 TVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTC 419 (522)
Q Consensus 380 ~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c 419 (522)
.......-.++..+.|.+||+.-..+|+++|+++++.++|
T Consensus 244 ~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 244 IFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 2223346666777889999999999999999999999987
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.60 E-value=2.8e-13 Score=128.23 Aligned_cols=264 Identities=16% Similarity=0.207 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhhh
Q psy15368 54 FFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADEC 133 (522)
Q Consensus 54 ~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
.-...++..+.++++++|-+++++.+...|++|++.+-++.-++++|++..+......
T Consensus 6 ~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~---------------------- 63 (303)
T PF05462_consen 6 IRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT---------------------- 63 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 4456677788899999999999999999999999999999999999987543211100
Q ss_pred hhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy15368 134 FLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLR 213 (522)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~ 213 (522)
....-..++..|.+++++..++..++.+-.++||++=|+.+++... .
T Consensus 64 -----------------------------~~~~~~~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~~----~ 110 (303)
T PF05462_consen 64 -----------------------------LSPSAGENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRYD----E 110 (303)
T ss_pred -----------------------------hcccCCCCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcCc----c
Confidence 0122234567899999999999999999999999999999987532 1
Q ss_pred CccchhhhhHHHHHHHHHHHHHHhhheeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHH----HHHHH
Q psy15368 214 TPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIF----VFYYL 289 (522)
Q Consensus 214 t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~----~~y~~ 289 (522)
.+|.-....+++|.++++.++..+... .....+.+|...... ..+.+ ..+.+|+.+++ +.+..
T Consensus 111 ~~k~e~~Y~l~~wGiPli~a~i~l~~~--~~g~~G~WCWI~~~~-------~~~r~----~lfY~Pl~ii~~~~~ilv~i 177 (303)
T PF05462_consen 111 LEKLEKYYHLVCWGIPLIPAVIPLIGN--DYGPAGNWCWIKPEW-------DVWRF----ALFYIPLWIIIIISAILVGI 177 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCCCceeecCCC-------cchHH----HHHHHHHHHHHHHHHHHHHH
Confidence 345556778888999998866554433 233445678654221 11111 12233332211 11111
Q ss_pred HHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHh
Q psy15368 290 VIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIF 369 (522)
Q Consensus 290 I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~ 369 (522)
..+...+..+. ... ++ ++++.+...-+..-.++|++||+|..+-.+.+..
T Consensus 178 ~~~~~y~~~~~-~~s----------------------------d~-~~~~~~~~~kL~~Yp~ifiicw~fa~INRI~~~~ 227 (303)
T PF05462_consen 178 TMRYIYRVIRN-GVS----------------------------DN-KDKHLKYQLKLVNYPLIFIICWIFATINRIYNFI 227 (303)
T ss_pred HHHHHHHHHcc-ccc----------------------------hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111100 000 00 1111222233556889999999999999999877
Q ss_pred cCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccccCC
Q psy15368 370 TPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAAG 422 (522)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~~~ 422 (522)
+.. +.++..+-..+..+...+|.++|++.++-++|.+...++|...
T Consensus 228 ~~~-------~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~~ 273 (303)
T PF05462_consen 228 GKN-------PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQFT 273 (303)
T ss_pred cCC-------chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Confidence 532 2345556667788899999999999999999988776655443
No 15
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.57 E-value=1.7e-13 Score=131.40 Aligned_cols=287 Identities=15% Similarity=0.194 Sum_probs=187.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHhhhc---cccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhh
Q psy15368 53 LFFATQTIYLIICITGLLGNTLVIYVVLRF---SKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAI 129 (522)
Q Consensus 53 ~~~~~~~i~~ii~~~giigN~lvi~vi~~~---~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~ 129 (522)
...+..++..+..++|++||++++.+-..+ ++.-+|.+..+.+||+++++..........
T Consensus 5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~----------------- 67 (303)
T PF05296_consen 5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSF----------------- 67 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 455667888899999999999999987653 333468899999999999875332111110
Q ss_pred hhhhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy15368 130 ADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITA 209 (522)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~ 209 (522)
...........+..+++..++..+....|.|..+++++-=++-|...-+.
T Consensus 68 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~ 117 (303)
T PF05296_consen 68 ------------------------------LSFFFPNIYFSENVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHP 117 (303)
T ss_pred ------------------------------HHHHcchhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcH
Confidence 00011222234556888888999999999999999999999988875432
Q ss_pred -----CCCCCccchhhhhHHHHHHHHHHHHHHhhheeEEcc----CCccccccccCCCcccCccchhhhHHHHHHHHHHH
Q psy15368 210 -----PNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDS----ENTKSCNIMWPETENLNGQSAFILYTFILGFAIPL 280 (522)
Q Consensus 210 -----~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~----~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 280 (522)
++..+ +....++.+.++++++..++.......... .....++...... .....+......+..++|+
T Consensus 118 ~Fl~LK~rI~-~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~~~N~t~~~~~~---~~~~~~~~~~~~~~~~lPf 193 (303)
T PF05296_consen 118 FFLWLKRRIS-KVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNNSRNSTSNFQES---KSSYFYFFILFNLGSFLPF 193 (303)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccCCCcceEEeecc---hHHHHHHHHHHHHHHHHhH
Confidence 11111 123345566677777333332222222111 1111122111111 1222333444458889999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhH
Q psy15368 281 VLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPY 360 (522)
Q Consensus 281 ~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~ 360 (522)
++++++...++..++||.++.+..... .++.+.+.+.|+.|+++...+.|+++++-.
T Consensus 194 ~i~l~s~~lli~SL~rH~r~M~~n~~g-----------------------~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~ 250 (303)
T PF05296_consen 194 LIFLVSSILLIFSLWRHMRRMQKNATG-----------------------FRDPSTEAHIRAIKTMISFLILYIIYFLSL 250 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCC-----------------------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888765433 122345788899999998888888876554
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccccC
Q psy15368 361 WITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAA 421 (522)
Q Consensus 361 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~~ 421 (522)
.+........++ .....+...+..+.++..|+|-.+.|+++|+++++.++|.+
T Consensus 251 ~~~~~~~~~~~~--------~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~k 303 (303)
T PF05296_consen 251 ILSFLSFFFPEN--------SIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCLK 303 (303)
T ss_pred HHHHHHHHhccc--------cHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 443222222211 12456677788899999999999999999999999998753
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.54 E-value=5.3e-13 Score=127.16 Aligned_cols=272 Identities=14% Similarity=0.113 Sum_probs=177.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhh
Q psy15368 53 LFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADE 132 (522)
Q Consensus 53 ~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
.+.+.++.+.+.+++-.+..+.+++++.+++..|.+.+-++.-||+.|++.+.+--...
T Consensus 31 ~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~t--------------------- 89 (313)
T PF10321_consen 31 KRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIIT--------------------- 89 (313)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhh---------------------
Confidence 35567888888888999999999999998777789999999999999987543210000
Q ss_pred hhhhcccceeeehhhhhhhHHhhhHhhhcccCCcc-ccccccch------hhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15368 133 CFLIGIPFLMITMSISYWHYILVSLFRVASLSSYW-PFGDLMCK------IYMTTTSINQFTSSIFLTIMSADRYVAVCH 205 (522)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~C~------~~~~~~~~~~~~s~~~l~~isidRy~aI~~ 205 (522)
|.. ..|...|+ +.+.+...+...+......++++|..-+..
T Consensus 90 --------------------------------G~l~i~G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~ 137 (313)
T PF10321_consen 90 --------------------------------GILAIFGAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNF 137 (313)
T ss_pred --------------------------------hHHHhcCccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 000 11333343 345566677788888899999999999999
Q ss_pred cCCCCCCCCccchhhhhHHHHHHHHHH--HHHHhhheeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHH
Q psy15368 206 PITAPNLRTPFISKVVSFIAWTASAIF--MIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLI 283 (522)
Q Consensus 206 P~~~~~~~t~~~~~~~i~~~Wi~s~~~--~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii 283 (522)
|........+++....+.+..+.++.. ..|+..+. ....+....+..........|.-......-++-.+.+
T Consensus 138 ~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fn------s~~~sw~fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t 211 (313)
T PF10321_consen 138 PFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFN------SEYMSWFFDPMIFEGKSPELYSNIPHTFNNIIVVICT 211 (313)
T ss_pred chhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCC------CCcceEecCccccCCCCccchhhHHHHHHHHHHHHHH
Confidence 987777767777665555444333333 22322211 1111111111110001122344444444445556778
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHH
Q psy15368 284 FVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWIT 363 (522)
Q Consensus 284 ~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~ 363 (522)
.++|..+...++++.+..... +..|.+++......++.+...+.++-|...
T Consensus 212 ~~lY~~l~~~l~~k~~~~~s~-----------------------------~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m 262 (313)
T PF10321_consen 212 TFLYIYLCYYLIKKSKYSTSS-----------------------------QLSKAQRQIFIQSVIICFFHAIAAVIYVYM 262 (313)
T ss_pred HHHHHHHHHHHHHhcccccch-----------------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHee
Confidence 889999988888865554222 234667777777777777776665544333
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccccCCC
Q psy15368 364 QIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAAGK 423 (522)
Q Consensus 364 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~~~~ 423 (522)
... ..+.++..+++...-+++..+|+||..+||..|++++|++++.+.+
T Consensus 263 ~f~-----------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~r 311 (313)
T PF10321_consen 263 QFF-----------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKIR 311 (313)
T ss_pred eee-----------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcccccc
Confidence 221 2255688888999999999999999999999999999999855543
No 17
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.11 E-value=2.3e-09 Score=103.07 Aligned_cols=278 Identities=15% Similarity=0.183 Sum_probs=171.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhcc-ccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhhhhhhc
Q psy15368 59 TIYLIICITGLLGNTLVIYVVLRFS-KMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIG 137 (522)
Q Consensus 59 ~i~~ii~~~giigN~lvi~vi~~~~-~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (522)
++..+.+++|++.|.+.++.+.++. +.-+...+++.|-|+.|++.+++..+..........
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~------------------ 64 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGT------------------ 64 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC------------------
Confidence 4567889999999999999877643 334677899999999999876543332211111100
Q ss_pred ccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc
Q psy15368 138 IPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFI 217 (522)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~~ 217 (522)
+.. .......-..|...|.....+...+...+.+++.+--.-||..+.++.. ++++
T Consensus 65 -~~~------------------~~~~GpC~~~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~ 120 (292)
T PF10317_consen 65 -SIA------------------VISYGPCRYFGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKR 120 (292)
T ss_pred -cEE------------------EEeeecceecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhH
Confidence 000 0001122234677899999999999999999999999999999987633 5566
Q ss_pred hhhhhHHHHHHHHHHHHHHhhheeEEcc-CC-ccccc--cccCCCcccCc-------cchhhhHHHHHHHHHHHHHHHHH
Q psy15368 218 SKVVSFIAWTASAIFMIPVIMYASIIDS-EN-TKSCN--IMWPETENLNG-------QSAFILYTFILGFAIPLVLIFVF 286 (522)
Q Consensus 218 ~~~~i~~~Wi~s~~~~~p~~~~~~~~~~-~~-~~~C~--~~~~~~~~~~~-------~~~~~~~~~~~~~~lp~~ii~~~ 286 (522)
....++..++.++...+..+........ +. ...-. ++..+. ...+ ...+......+..+...+++.++
T Consensus 121 ~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~y~~~~~-~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 199 (292)
T PF10317_consen 121 IIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHPEYNLENY-SISGFSDISSPPSLINILIMTIPIFPIPIVIFFL 199 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCcccccccc-eeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777777777775543332111100 00 00000 111100 0001 11111222222222222334444
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHH
Q psy15368 287 YYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIA 366 (522)
Q Consensus 287 y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~ 366 (522)
--++.+.++++..+. .++.++.+++.+|.+.+.+.+=+++..|.....++
T Consensus 200 R~ki~~~L~~~~~~~------------------------------S~~tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~ 249 (292)
T PF10317_consen 200 RRKILKFLNKKSSSM------------------------------SERTKSMHRQLVKGLTIQALLPLFFYIPGVIIYFL 249 (292)
T ss_pred HHHHHHHHHhhhhhc------------------------------CHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 555555555532222 12345677899999999999999999998888887
Q ss_pred HHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHH
Q psy15368 367 LIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLK 415 (522)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~ 415 (522)
......+ ..........+..+-+.+||+++..+-+.+|++++|
T Consensus 250 ~~~~~~~------~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 250 SQFTGYE------HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHhccc------cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 7766442 334666667777888999999999999999999865
No 18
>KOG4193|consensus
Probab=98.89 E-value=1.3e-07 Score=97.81 Aligned_cols=198 Identities=13% Similarity=0.187 Sum_probs=123.3
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhhhHHHHHHHHHHHHHHhhheeEEc--cCCccc
Q psy15368 173 MCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIID--SENTKS 250 (522)
Q Consensus 173 ~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~--~~~~~~ 250 (522)
.|.+.+++..++..++.+-+.+++++=|+.++.=++ ...+++.....++.|...+++...........+ ......
T Consensus 385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~---~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~ 461 (610)
T KOG4193|consen 385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFR---SRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRV 461 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCc
Confidence 699999999999999999999999999996665433 234444555546889998888655444332221 222244
Q ss_pred cccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCCchhhhccccccceeeeEEeEeeec
Q psy15368 251 CNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIR----KLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTV 326 (522)
Q Consensus 251 C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~----~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (522)
|..+.... ..+. |+.|+.+++.+++.++. ++.++........+
T Consensus 462 CWl~~~~~------~~~~-------F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~-------------------- 508 (610)
T KOG4193|consen 462 CWLDTQNG------FIWS-------FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIAS-------------------- 508 (610)
T ss_pred eEEecCCc------eEEE-------EehHHHHHHHHHHHHHHHHHHHHhhcccccCcchh--------------------
Confidence 65553222 1221 55566666666644433 33332222221111
Q ss_pred CCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcC
Q psy15368 327 GPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLS 406 (522)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~ 406 (522)
+....+..+..+.++.+.-+.|.--....+-. ....+.++..++-.+..+.=.++|++++
T Consensus 509 ---------~~~~~~~~~~~l~L~~lLGlTW~fgi~s~~~~-----------~~~v~~YlFti~NalQG~fIFi~~cll~ 568 (610)
T KOG4193|consen 509 ---------KLENISLIRSALALLFLLGLTWIFGIFSWLPG-----------TSVVFAYLFTIFNALQGVFIFIFHCLLR 568 (610)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cchHHHHHHHHHHHhhhhHhhHhhhhhh
Confidence 12222667777788888888887544433210 1223556666666777888889999999
Q ss_pred hHHHHHHHHHccccCCCCcc
Q psy15368 407 DNFKKSFLKACTCAAGKDVN 426 (522)
Q Consensus 407 ~~fR~~l~~~~~c~~~~~~~ 426 (522)
++.|++.++.++|+..+...
T Consensus 569 ~kvr~~~~k~~~~~~~~~~~ 588 (610)
T KOG4193|consen 569 KKVRKEYRKWLCCGRGDSSA 588 (610)
T ss_pred HHHHHHHHHHhcccCCCCCC
Confidence 99999999999877655433
No 19
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.87 E-value=8.8e-09 Score=95.07 Aligned_cols=246 Identities=15% Similarity=0.148 Sum_probs=160.8
Q ss_pred ccccchhhHHHHHhhhhhhhhh--ccchhheehhhccchhhhhhhhhhhhhhhhhcccceeeehhhhhhhHHhhhHhhhc
Q psy15368 84 KMQTVTNMYIVNLAIADECFLI--GIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVA 161 (522)
Q Consensus 84 ~lr~~~~~~l~~LaiaDll~~l--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (522)
+..+|.+..+.+||+|++++++ ++|-.+. .
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~------------------------------------------------~ 37 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMA------------------------------------------------F 37 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH------------------------------------------------H
Confidence 3468999999999999998766 4553220 0
Q ss_pred ccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC--C-CCCCCccchhhhhHHHHHHHHHHHHHHhh
Q psy15368 162 SLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPIT--A-PNLRTPFISKVVSFIAWTASAIFMIPVIM 238 (522)
Q Consensus 162 ~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~--~-~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~ 238 (522)
.+.-.+++..||+..++..++...|+.+.+++++-..+.|.-.-. . -+...+|.....+...|++.+++......
T Consensus 38 --~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~ 115 (265)
T PF03402_consen 38 --FGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLV 115 (265)
T ss_pred --hhcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeE
Confidence 011135788999999999999999999999999988777753211 0 12234445666777789988887654332
Q ss_pred heeEEc---cC----CccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhcccc
Q psy15368 239 YASIID---SE----NTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHR 311 (522)
Q Consensus 239 ~~~~~~---~~----~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~ 311 (522)
...... .. ....|.....+.. ....+. ....+.=++.+.+|+.....+...+.||+++.+.....+.
T Consensus 116 ~~~~~~n~t~~~~~~~~~yCs~~~~~~~---~~~~~~-~~~~~~D~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~-- 189 (265)
T PF03402_consen 116 YIIATPNSTNNNFTYSLGYCSSVPISYI---VSSLFA-TLLSFRDVLFVGLMIWASGYMVFLLYRHHQQVQHIHSSSL-- 189 (265)
T ss_pred EEEecCccccCceeecCCeEEEEecchh---hhhhhh-hHHHhhHHHHHHHHHhhhhhheeeeeecccccccCcCCCC--
Confidence 211111 11 1134654322211 111122 2222333555678888888888889888877776544311
Q ss_pred ccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHH
Q psy15368 312 KVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALS 391 (522)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (522)
..+...|.|+++++++++..|+..+..-.+..++.....+. .++..+..++.
T Consensus 190 ---------------------s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~-------~~~~~~~~~ls 241 (265)
T PF03402_consen 190 ---------------------SPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNS-------PWLLNISVFLS 241 (265)
T ss_pred ---------------------CCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCC-------cceeEHHHHHh
Confidence 22346789999999999999999999887776554433221 12334566788
Q ss_pred hhccchhHHHHHHcChHHHHHH
Q psy15368 392 YSNSAMNPILYAFLSDNFKKSF 413 (522)
Q Consensus 392 ~~ns~~NPiIY~~~~~~fR~~l 413 (522)
...+.+.|++-...++++.+.+
T Consensus 242 ~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 242 SCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred HHhHhhChHHhhccCchHHHHh
Confidence 8889999999999999887754
No 20
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.79 E-value=1.9e-07 Score=83.56 Aligned_cols=124 Identities=11% Similarity=0.044 Sum_probs=79.1
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---------CCCccchhhhhHHHHHHHHHHHHHHhh
Q psy15368 168 PFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPN---------LRTPFISKVVSFIAWTASAIFMIPVIM 238 (522)
Q Consensus 168 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~---------~~t~~~~~~~i~~~Wi~s~~~~~p~~~ 238 (522)
..++..|.+++++..+...++-+...+||++-|+.|.+|-..++ ...+.....+..+.|++...++.. .
T Consensus 68 ~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i--~ 145 (201)
T PF11710_consen 68 IAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFI--G 145 (201)
T ss_pred eCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHh--c
Confidence 34678899999999999999999999999999999999922111 011111222222334333332211 1
Q ss_pred heeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15368 239 YASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPK 300 (522)
Q Consensus 239 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~~~~~ 300 (522)
.....+.+.+..|....... .+-++..-+-.++-.+.+++.|..++..+|++.++
T Consensus 146 ~~~~~Y~~~g~WCWi~~~~~-------~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 146 LGGPGYGPAGAWCWIPSRYE-------WYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred cccCcccccCcEEEECCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 12333455678887663322 34455555555666788999999999999987554
No 21
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.77 E-value=5.9e-06 Score=80.63 Aligned_cols=287 Identities=11% Similarity=0.124 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhhhhhh
Q psy15368 57 TQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLI 136 (522)
Q Consensus 57 ~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (522)
...+-.+++++|++.++..++.+.+++.+|.-..+++....++.++.++...+.-
T Consensus 19 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h------------------------- 73 (324)
T PF10292_consen 19 SLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILH------------------------- 73 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 3455777889999999999888888888888889999999999987655321111
Q ss_pred cccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q psy15368 137 GIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPF 216 (522)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~ 216 (522)
....+ ..+ .....-+...+...|-+......++...+..+..++.+||++|-++.-+|.+. ++.
T Consensus 74 ---------~~~l~----~~~--~~~~~Cd~~~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~ 137 (324)
T PF10292_consen 74 ---------TYDLY----NYF--FPDDPCDMIPSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKW 137 (324)
T ss_pred ---------HHHHH----HHH--ccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-Ccc
Confidence 00000 000 00122334456677999999999999999999999999999999999888765 333
Q ss_pred chhhhhHHHHHHHHHHHHHHhhheeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15368 217 ISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRT 296 (522)
Q Consensus 217 ~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~ 296 (522)
....+....|++++......+..... +.+.-..|........ ...+. ...+..++ -++..+.+..++++-+|
T Consensus 138 ~Gi~l~~~qi~is~~~~~~~~~~~~~-~~~~~~yC~~~~~~~~----~~~~~--~~~~~~~~-~i~~~i~f~~L~~~Nkk 209 (324)
T PF10292_consen 138 LGILLAFFQILISLLILYFVYSDEDF-PNERMYYCQASSSSSP----YRVNI--PFIVILVL-QILALILFRYLLRKNKK 209 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc-cCccceeeEEecCCCc----hhhHH--HHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 22344444455554433322221111 1223355766543321 11111 11111111 12222233333333222
Q ss_pred cCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCCCC
Q psy15368 297 VGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQ 376 (522)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~~~ 376 (522)
.+++.... +-.++-+.++..|..+++..++.+..+.-+.+.+..+......++...
T Consensus 210 ~r~~~~~~------------------------~LS~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 265 (324)
T PF10292_consen 210 LRKQQKHS------------------------TLSERYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSK 265 (324)
T ss_pred HHhhccCC------------------------CcchHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCh
Confidence 21100000 011233445667777777777766666666665555544433322212
Q ss_pred CchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHcc
Q psy15368 377 SSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACT 418 (522)
Q Consensus 377 ~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~ 418 (522)
.. ...+. -.....-.++.+-|++.....++.|++.++-+.
T Consensus 266 ~~-y~al~-e~~~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l~ 305 (324)
T PF10292_consen 266 PN-YFALA-ELNHIFPLYSIISPLILYRKIKKIRKKRKKRLE 305 (324)
T ss_pred hh-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222 223356667889999999999999888766544
No 22
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.74 E-value=4.9e-06 Score=78.79 Aligned_cols=154 Identities=14% Similarity=0.243 Sum_probs=89.1
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhhhHHHHHHHHHHHHHHhhheeEEccCCcc
Q psy15368 170 GDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTK 249 (522)
Q Consensus 170 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~~~ 249 (522)
....|.....-..++..++.|-+.+-|+|=|+.+.+-- .+.....-=+++|..+.++..--... .+.++..
T Consensus 112 p~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~---Ly~Ps~~ 182 (405)
T PF02101_consen 112 PAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSA------GRSTIWLYHMMAWGLPALLCAEGLAM---LYYPSIS 182 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccC------CCcchhHHHHHHHHHHHHHHHhccce---eecCCHH
Confidence 44679888888888899999999999999999875521 12223455567799888875543222 1223333
Q ss_pred ccccccCCCcccCccchhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeee
Q psy15368 250 SCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFV----FYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRT 325 (522)
Q Consensus 250 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~----~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (522)
.|..... +..-.++ ...+|+++..+ +|.+..+.+-...+.+...-.
T Consensus 183 ~Ce~~l~-------~alphYv----ttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT------------------- 232 (405)
T PF02101_consen 183 RCESGLE-------HALPHYV----TTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYT------------------- 232 (405)
T ss_pred hhhhhhh-------hcchhHH----HHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc-------------------
Confidence 4643311 1112222 22344444444 444444444433322221111
Q ss_pred cCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHh
Q psy15368 326 VGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIF 369 (522)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~ 369 (522)
++.++....+-+-++.|.++|.+||+|-.+-.++..+
T Consensus 233 -------~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~ 269 (405)
T PF02101_consen 233 -------ENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFY 269 (405)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHH
Confidence 1223444555666788899999999999988776543
No 23
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.71 E-value=6.8e-07 Score=85.46 Aligned_cols=264 Identities=14% Similarity=0.187 Sum_probs=148.7
Q ss_pred HHHHHHHhhhhHHHHHHhhhccc--c-ccchhhHHHHHhhhhhhhhh-ccch-hheehhhccchhhhhhhhhhhhhhhhh
Q psy15368 62 LIICITGLLGNTLVIYVVLRFSK--M-QTVTNMYIVNLAIADECFLI-GIPF-LMITIKMQTVTNMYIVNLAIADECFLI 136 (522)
Q Consensus 62 ~ii~~~giigN~lvi~vi~~~~~--l-r~~~~~~l~~LaiaDll~~l-~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (522)
.+-++.+++.+..+++++.++++ . +++.+.+...-++.|++.-+ ..+. ......
T Consensus 5 ~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~--------------------- 63 (275)
T PF02118_consen 5 LIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYT--------------------- 63 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhcccc---------------------
Confidence 34467788889999999888777 4 67777777777777766432 1111 110000
Q ss_pred cccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q psy15368 137 GIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPF 216 (522)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~ 216 (522)
| .....+... ....+...++..++...+..+.....+.|+++|+-++..|.++.+..++.
T Consensus 64 --~-------------~~~~~~~~~-----~~~~~~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~ 123 (275)
T PF02118_consen 64 --P-------------PFCPFFLPF-----FENPPFFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRY 123 (275)
T ss_pred --C-------------ccchhHHHH-----HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhh
Confidence 0 000000000 11233457778888888999999999999999999999999998876654
Q ss_pred chhhhhHHHHHHHHHHHHHHhhheeEE-ccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15368 217 ISKVVSFIAWTASAIFMIPVIMYASII-DSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLR 295 (522)
Q Consensus 217 ~~~~~i~~~Wi~s~~~~~p~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr 295 (522)
...++++++++.+....+.+...... ..++...-... ... ............+++..++.++++....++++
T Consensus 124 -~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~ 196 (275)
T PF02118_consen 124 -YWIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFSYSYN-DTV-----SWASLSIFSLIYFIIIIIITIITNIITYRRLR 196 (275)
T ss_pred -hhhheeeeeehhHHHHHHHHccccEEEEECCceEEEEE-ecc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666655544444332222 22222111111 110 11122233344445555666777777777777
Q ss_pred hcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCCC
Q psy15368 296 TVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQC 375 (522)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~~ 375 (522)
+.+++ .++.|++..+..++..+++++.-+...+..... ..+..+
T Consensus 197 ~~~~~----------------------------------~~~~er~L~~is~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 240 (275)
T PF02118_consen 197 KLSKR----------------------------------IKSVERNLTIISFIISFVQLLIAIWQIINSFAF-FFDFLP- 240 (275)
T ss_pred hhhhh----------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccc-
Confidence 64321 234567777777777777776655555532211 111111
Q ss_pred CCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHH
Q psy15368 376 QSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKS 412 (522)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~ 412 (522)
.......+.....=+-+...|++-..+++++|++
T Consensus 241 ---~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 241 ---ISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 2222333333333333667899999999999986
No 24
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.51 E-value=2.4e-05 Score=75.91 Aligned_cols=280 Identities=16% Similarity=0.214 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhhc-cccccchhhHHHHHh----hhhhhhhh-ccchhheehhhccchhhhhhhhhhh
Q psy15368 57 TQTIYLIICITGLLGNTLVIYVVLRF-SKMQTVTNMYIVNLA----IADECFLI-GIPFLMITIKMQTVTNMYIVNLAIA 130 (522)
Q Consensus 57 ~~~i~~ii~~~giigN~lvi~vi~~~-~~lr~~~~~~l~~La----iaDll~~l-~~p~~~~~~~~~~~~~~~~~~~~~~ 130 (522)
.....=++.+++++-|++.++.+.++ ++.-+.....++++- +.|+..++ ..|......
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~---------------- 69 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPS---------------- 69 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccch----------------
Confidence 45666778889999999999987664 333344555555554 44554433 334333111
Q ss_pred hhhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy15368 131 DECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAP 210 (522)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~ 210 (522)
...+ -.|-...-+.-..++.++..........++..+--+||.++....+
T Consensus 70 ---------------~~~~-------------~~G~l~~~gv~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-- 119 (302)
T PF10318_consen 70 ---------------PAGY-------------PLGILSYFGVPTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-- 119 (302)
T ss_pred ---------------HHhh-------------CCcchhhcccChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--
Confidence 1000 0122212233456666777777777788888889999999997644
Q ss_pred CCCCccchhhhhHHHHHHHHHHHHHHhhheeEEccC------Cccccccc--cCCCcc--cCccchhhhHHHHHHHHHHH
Q psy15368 211 NLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSE------NTKSCNIM--WPETEN--LNGQSAFILYTFILGFAIPL 280 (522)
Q Consensus 211 ~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~------~~~~C~~~--~~~~~~--~~~~~~~~~~~~~~~~~lp~ 280 (522)
+...++......+..++++.....|...... .+++ +...|... +.+++. ......+......+..++..
T Consensus 120 ~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~p-dQ~~~k~~~~~~~pc~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~ 198 (302)
T PF10318_consen 120 RSLWKKIRIIFIIFNYIIAFLFFIPIYLSIP-DQEEAKQEVLKKYPCPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIF 198 (302)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhccCCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHH
Confidence 2222232344444556666666666655332 1111 11223321 111110 01111233333344444444
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhh-hh
Q psy15368 281 VLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCW-LP 359 (522)
Q Consensus 281 ~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~-~P 359 (522)
..+++....+.+.++++.+...+ ++.+|.++|..+.+.+.+.+.++.- .|
T Consensus 199 ~~~~~f~~~~~~~l~~~~~~~~S-----------------------------~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P 249 (302)
T PF10318_consen 199 IQIIFFAFLIIYYLLKSQKKTMS-----------------------------KKTRKMQKKFLIALIIQVLIPFIFLFIP 249 (302)
T ss_pred HHHHHHHHHHHHHHHhhchhhhC-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555555566666665442222 2334777888887777776665554 57
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccc
Q psy15368 360 YWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTC 419 (522)
Q Consensus 360 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c 419 (522)
.....+.......+ +.+-.+...+...++.+.-++..+.++.+|+.++++++|
T Consensus 250 ~~~~~~~~~~~~~~-------q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 250 LIYFIISIIFGYYN-------QALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred HHHHHHHHhccccc-------cccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 66665544433221 124456667778899999999999999999999999987
No 25
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.50 E-value=3.3e-06 Score=81.29 Aligned_cols=276 Identities=16% Similarity=0.174 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHH----HHhhhhhhhhh-ccchhheehhhccchhhhhhhhhhh
Q psy15368 56 ATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIV----NLAIADECFLI-GIPFLMITIKMQTVTNMYIVNLAIA 130 (522)
Q Consensus 56 ~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~----~LaiaDll~~l-~~p~~~~~~~~~~~~~~~~~~~~~~ 130 (522)
+....+=++++++++.|.+.++.+..+...-....++++ ...++|+-..+ .-|.-...+
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~---------------- 73 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPI---------------- 73 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcce----------------
Confidence 344677788999999999999987664332233433433 34677876543 222222100
Q ss_pred hhhhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy15368 131 DECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAP 210 (522)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~ 210 (522)
...... .....| -+..+.....+..+......-.++.--+-|+-+|.+..+.+
T Consensus 74 ----------~agy~~---------------G~l~~~--f~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~ 126 (303)
T PF10327_consen 74 ----------PAGYCV---------------GFLARY--FGISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKH 126 (303)
T ss_pred ----------eEEEEE---------------eehhhc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 000000 000111 11223334444444445555556666788999999887644
Q ss_pred CCCCccchhhhhHHHHHHHHHHHHHHhhheeEEccC-------CccccccccCCCccc-----CccchhhhHHHHHHHHH
Q psy15368 211 NLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSE-------NTKSCNIMWPETENL-----NGQSAFILYTFILGFAI 278 (522)
Q Consensus 211 ~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~-------~~~~C~~~~~~~~~~-----~~~~~~~~~~~~~~~~l 278 (522)
. .++...........+..+...... ...+...++ +...|.....+.+.. ...........+++.++
T Consensus 127 ~-l~~~~~~~~~~~~~~~p~~~~~~~-~~~~~s~eeq~~yI~~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~ 204 (303)
T PF10327_consen 127 V-LPKWFYIFFYFFCILFPFFIFICF-YFSGMSREEQMEYIRENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFL 204 (303)
T ss_pred c-CcHHHHHHHhhHHHHHHHHHHHHH-HhcCCCHHHHHHHHHhhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHH
Confidence 3 344433333333333333333322 222221111 112232222111100 11112223334445556
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhh
Q psy15368 279 PLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWL 358 (522)
Q Consensus 279 p~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~ 358 (522)
-.++..+++..+++.+++.+++..+ +..++++++.+.+++..++-.+|-+
T Consensus 205 ~~~~~~~~~~~m~~~L~~~k~~iS~------------------------------~ty~kHk~av~SLi~Q~~~~~i~~~ 254 (303)
T PF10327_consen 205 CFVIFIFLTIDMFRMLKKLKKKISK------------------------------QTYQKHKEAVRSLIAQFATSSICIL 254 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888899888876554433 3457888999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHH
Q psy15368 359 PYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKS 412 (522)
Q Consensus 359 P~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~ 412 (522)
|..+..+......++ .+.+..+......++|.+|-++-.+.++.||+-
T Consensus 255 P~~~~~~~~~~~~~~------~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 255 PPFIFVVVVIFEFED------AQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHhhhhheecCCC------cHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 999887765554331 234667777888899999999999999999984
No 26
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=98.42 E-value=6e-08 Score=94.27 Aligned_cols=275 Identities=18% Similarity=0.237 Sum_probs=156.5
Q ss_pred HHHHHHHHhhhhHHHHHHhhhccccc-cchhhHHHHHhhhhhhhhhc----cchhheehhhccchhhhhhhhhhhhhhhh
Q psy15368 61 YLIICITGLLGNTLVIYVVLRFSKMQ-TVTNMYIVNLAIADECFLIG----IPFLMITIKMQTVTNMYIVNLAIADECFL 135 (522)
Q Consensus 61 ~~ii~~~giigN~lvi~vi~~~~~lr-~~~~~~l~~LaiaDll~~l~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (522)
.-+.++++++.|.+.++.+.++.+.+ ..-.+++...|+.|+++.+. -|... . ..+.|+
T Consensus 5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~-~-----~~~~~~----------- 67 (307)
T PF10326_consen 5 QYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIH-S-----YGSSFV----------- 67 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhcee-e-----cCCeeE-----------
Confidence 44667899999999999987654433 33456777889999886432 22111 0 000000
Q ss_pred hcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q psy15368 136 IGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTP 215 (522)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~ 215 (522)
.....+.+..+....++...+...+...+...++.=-+.||.++++|.+.+....+
T Consensus 68 ------------------------~~~~~~~~~~~~~~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~f~~~ 123 (307)
T PF10326_consen 68 ------------------------VFSDSGPFFLSKSIGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRYFSGW 123 (307)
T ss_pred ------------------------EEeecccccccchheeehhhhhhhhHHHHHHHHHhHhhhheeeeccchhhcccccc
Confidence 11112444455555666666677777777778888889999999999875444333
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhheeEEccCC--------------ccc----cccccC--CCcc--cCccchhhhHHHH
Q psy15368 216 FISKVVSFIAWTASAIFMIPVIMYASIIDSEN--------------TKS----CNIMWP--ETEN--LNGQSAFILYTFI 273 (522)
Q Consensus 216 ~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~--------------~~~----C~~~~~--~~~~--~~~~~~~~~~~~~ 273 (522)
+. ...++..-+.++....-........++.+ ... -...|. .+.. .............
T Consensus 124 ~~-~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~ 202 (307)
T PF10326_consen 124 RF-IIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLENYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMC 202 (307)
T ss_pred ce-eeeehhhhhhcccceEEEeehhccchhhhhhhccccccccCCCccceeEEEEEEeeeccCCceeechhhheeeeecc
Confidence 33 22222222222222111100000000000 000 001110 1111 1222223334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHH-
Q psy15368 274 LGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITV- 352 (522)
Q Consensus 274 ~~~~lp~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~- 352 (522)
....+.+.++++|-.++++++++..+.. + ++.++-+++..+.+++.+++
T Consensus 203 ~im~~s~~iii~cg~~~~~~i~~~~~~~-S-----------------------------~~~~~lq~QLf~aLv~Qt~iP 252 (307)
T PF10326_consen 203 IIMSISFFIIIYCGIKIYKKIKKLSSIM-S-----------------------------SKTRKLQKQLFKALVIQTIIP 252 (307)
T ss_pred hhHHhHHHHHHHHHhhhHHHHhcccccc-C-----------------------------hhhHHHHHHHHHHHHHHhhhh
Confidence 5567788999999999999995543332 1 12346667787777766654
Q ss_pred HHhhhhhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHH
Q psy15368 353 YVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFL 414 (522)
Q Consensus 353 f~i~~~P~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~ 414 (522)
.+...+|..+..+.-.+.-+.. ....+...+..+.+++||++-.+.-|++|++++
T Consensus 253 ~i~~~~P~~~~~~~p~~~i~~~-------~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 253 FIFMYIPVFIVFILPFFGIDLG-------FFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred heeeecchhheeeeeccCCCCC-------ccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 5566789888776655543311 133455567788999999999999999999873
No 27
>KOG4564|consensus
Probab=98.41 E-value=2.1e-05 Score=78.14 Aligned_cols=269 Identities=13% Similarity=0.183 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhhhhhhcc
Q psy15368 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGI 138 (522)
Q Consensus 59 ~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (522)
+++.+-..++++.=++.+.++..-|++|-..|++=.||-++=++-++.....-.....+.
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~-------------------- 208 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNG-------------------- 208 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------------
Confidence 566666666666666667777777899999999999998888765443222110000000
Q ss_pred cceeeehhhhhhhHHhhhHhhhcccCCcc----ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q psy15368 139 PFLMITMSISYWHYILVSLFRVASLSSYW----PFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRT 214 (522)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t 214 (522)
.........+ ..+...|+...++...+..+..+-|.+=.+.=|-.+.--.. ..
T Consensus 209 -------------------~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~----se 265 (473)
T KOG4564|consen 209 -------------------EQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF----SE 265 (473)
T ss_pred -------------------cccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec----cC
Confidence 0000000111 24567899999999998888888888877776666654322 13
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhhheeEEccCCccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15368 215 PFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKL 294 (522)
Q Consensus 215 ~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l 294 (522)
++.....+++-|.+.+++..+........++. .|...... ....+ ..-.-.++++++-.++.+.|++.+
T Consensus 266 r~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d~---~CW~~~~~-----~~~~W---Ii~gPi~~ai~vNf~flinIvrIL 334 (473)
T KOG4564|consen 266 RRYFWLYLLIGWGVPAVFVVVWAIVRLYLEDT---GCWDSNDT-----GHIWW---IIRGPILLAILVNFIFLINIVRIL 334 (473)
T ss_pred ccHHHHHHHHhhCCcHHHhhhHHhHheeeccc---cccccCCC-----cceEE---EEeccHHHHHHHHHHHHHHHHHHH
Confidence 56677888888999999988877655332222 45333211 01111 111223345566677777777777
Q ss_pred HhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCC
Q psy15368 295 RTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQ 374 (522)
Q Consensus 295 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~ 374 (522)
-++-+..+..+. ...+|++|..++++-+|-+-.+.+ .+.+++.
T Consensus 335 v~KLr~~~~~~~------------------------------~~y~K~vKaTLvLIPLfGI~~ilf-------~~~P~~~ 377 (473)
T KOG4564|consen 335 VTKLRASNASET------------------------------DQYRKLVKATLVLIPLFGIHYILF-------AFRPDED 377 (473)
T ss_pred HHHhcCccccch------------------------------HHHHHHHHHHHHHHHHcCCeeEEE-------EecCchH
Confidence 654443332221 236777887777776665543322 2222221
Q ss_pred CCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccccC
Q psy15368 375 CQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAA 421 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~~ 421 (522)
............|...+..+=-++|++.|+|.|.++||.+...+
T Consensus 378 ---~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~ 421 (473)
T KOG4564|consen 378 ---TLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWR 421 (473)
T ss_pred ---HHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcC
Confidence 22344556677788888999999999999999999999886444
No 28
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.31 E-value=1.9e-05 Score=74.00 Aligned_cols=124 Identities=17% Similarity=0.078 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhhh
Q psy15368 54 FFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADEC 133 (522)
Q Consensus 54 ~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
..+..++..+.+.+..+.|..++..+...|+.|++.-.+.-...+.|.+.++...............
T Consensus 5 ~~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~------------- 71 (273)
T PF10316_consen 5 AIIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLF------------- 71 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence 4556677788889999999999999887777556666666667999998776442222111000000
Q ss_pred hhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy15368 134 FLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLR 213 (522)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~ 213 (522)
.+.......=-..+................||+||.+|++.|..|++..
T Consensus 72 -------------------------------~~~~~~~~~if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r 120 (273)
T PF10316_consen 72 -------------------------------PEFLDYKNLIFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYR 120 (273)
T ss_pred -------------------------------hhhhccccEEeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC
Confidence 0000000111112223334445677788999999999999999998775
Q ss_pred Cccchhhh
Q psy15368 214 TPFISKVV 221 (522)
Q Consensus 214 t~~~~~~~ 221 (522)
.+-....+
T Consensus 121 ~k~~~~~I 128 (273)
T PF10316_consen 121 KKIPNFII 128 (273)
T ss_pred ccccHHHH
Confidence 55443333
No 29
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.16 E-value=0.00035 Score=63.41 Aligned_cols=201 Identities=11% Similarity=0.209 Sum_probs=125.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhhhHHHHHHHHHHHHHHhhheeEEccCC-----
Q psy15368 173 MCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSEN----- 247 (522)
Q Consensus 173 ~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~----- 247 (522)
.-.+...+..++.++-.+.=..||+.|....-.-....+...+....+.+..+|++++..........+....+.
T Consensus 89 ~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y 168 (305)
T PF04789_consen 89 LFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHY 168 (305)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccE
Confidence 345566778888888899999999999887664333335556777888888899999888666554443322211
Q ss_pred ccccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecC
Q psy15368 248 TKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVG 327 (522)
Q Consensus 248 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (522)
.-.|..... .-..............+.+.+|+. +...|+.+..++-..++..
T Consensus 169 ~L~C~~~~~-~v~~~~P~~IqiiE~ilQ~~IPi~-Il~iYiAIIiKI~~MKkss-------------------------- 220 (305)
T PF04789_consen 169 QLNCETCNS-VVDISPPRGIQIIEIILQFGIPIF-ILVIYIAIIIKIIKMKKSS-------------------------- 220 (305)
T ss_pred EEEcCCCCe-eEeeCCCCchhHHHHHHHHhHHHH-HHHHHHHHHHHHHHHhhcc--------------------------
Confidence 133543310 001112334556788899999966 5556666655554322211
Q ss_pred CCCCchhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcCh
Q psy15368 328 PKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSD 407 (522)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~ 407 (522)
..+.|.+..|.-+.+.++| ..+..+..+-... .........+..+.+.+-..-.+..|..+.+.++
T Consensus 221 -------LnK~Ei~ILKQAifIFvlF---Q~ss~VFl~~qt~----~~~~~tAFlIKR~iNT~ei~agaatP~ffffTs~ 286 (305)
T PF04789_consen 221 -------LNKNEITILKQAIFIFVLF---QASSCVFLLCQTF----KFNVATAFLIKRIINTMEIFAGAATPCFFFFTSK 286 (305)
T ss_pred -------CCchhHHHHHHHHHHHHHH---HHHHHHHHhheee----eecchHHHHHHHHHHHHHHHhhccCCeEEEEehH
Confidence 1245677777776555444 4444443332222 2223344556677788888889999999999999
Q ss_pred HHHHHHHH
Q psy15368 408 NFKKSFLK 415 (522)
Q Consensus 408 ~fR~~l~~ 415 (522)
|.|+-+..
T Consensus 287 eirk~~s~ 294 (305)
T PF04789_consen 287 EIRKLVSS 294 (305)
T ss_pred HHHHHHHh
Confidence 99998744
No 30
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=98.16 E-value=9.2e-05 Score=69.46 Aligned_cols=273 Identities=14% Similarity=0.124 Sum_probs=142.0
Q ss_pred HHHHHHHhhhhHHHHHHhhhccccc-cchhhHHHHHhhhhhhhhh---ccchhheehhhccchhhhhhhhhhhhhhhhhc
Q psy15368 62 LIICITGLLGNTLVIYVVLRFSKMQ-TVTNMYIVNLAIADECFLI---GIPFLMITIKMQTVTNMYIVNLAIADECFLIG 137 (522)
Q Consensus 62 ~ii~~~giigN~lvi~vi~~~~~lr-~~~~~~l~~LaiaDll~~l---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (522)
-+.++++.+.|-+-++.+..+|+.+ -.-.++++.-|+-|++..+ .+|.-+.++ .+-|.++
T Consensus 12 k~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~y-----ry~F~~f----------- 75 (310)
T PF10319_consen 12 KIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGY-----RYAFVVF----------- 75 (310)
T ss_pred HHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeecc-----ceEEEEE-----------
Confidence 3567889999999999998887766 3446788889999998644 455544221 1111111
Q ss_pred ccceeeehhhhhhhHHhhhHhhhcccCCccccc-cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q psy15368 138 IPFLMITMSISYWHYILVSLFRVASLSSYWPFG-DLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPF 216 (522)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~ 216 (522)
..+.|... ...=......-..+...|--.+..=-+.||+++++|...++...+.
T Consensus 76 -------------------------i~dG~F~~~s~l~~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~ 130 (310)
T PF10319_consen 76 -------------------------ISDGPFFEKSELGQHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPY 130 (310)
T ss_pred -------------------------EcCCcCcCcchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhH
Confidence 11223221 1111222222223333344446666789999999996655555443
Q ss_pred chhhhhHHHHHHHHHHHHHHhhheeEEc--------------cCCc-----cccccccCCCcccCccchhhhHHHHHHHH
Q psy15368 217 ISKVVSFIAWTASAIFMIPVIMYASIID--------------SENT-----KSCNIMWPETENLNGQSAFILYTFILGFA 277 (522)
Q Consensus 217 ~~~~~i~~~Wi~s~~~~~p~~~~~~~~~--------------~~~~-----~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (522)
.....+...-.........-.......+ ..+. ..+.+.....+ ........+....+.-.
T Consensus 131 gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F~e~YG~Ds~diNml~alY~eaS~~-~v~rSW~gi~~~T~iS~ 209 (310)
T PF10319_consen 131 GLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESFREVYGVDSMDINMLIALYNEASDE-TVFRSWIGIIILTIISS 209 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCCCCcCceEeeeeccCchh-HHHHHHHHHHHHHHHHH
Confidence 3333332222222222222111111100 0000 11111111111 00111111122222222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeecCCCCCchhhhhhhhhhhhhhHHHHHH-HHhh
Q psy15368 278 IPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITV-YVLC 356 (522)
Q Consensus 278 lp~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-f~i~ 356 (522)
..+.+..++-.+|.+++++..... .++..+-+++..|.+.+.+++ .+++
T Consensus 210 ~Si~~y~vlg~~I~~kL~~~~~~m------------------------------S~~T~~lq~qL~~AL~vQT~IPi~vs 259 (310)
T PF10319_consen 210 YSIILYFVLGYKIMKKLNKMSSTM------------------------------SKKTKRLQRQLFKALIVQTVIPICVS 259 (310)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhh------------------------------CHhHHHHHHHHHHHHHHHHHhHHHHh
Confidence 223333344444445444322211 233456677888888877665 5678
Q ss_pred hhhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChHHHHH
Q psy15368 357 WLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKS 412 (522)
Q Consensus 357 ~~P~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~ 412 (522)
..|-.+......++. +...|..+........=+.+||+.-.++-|.||++
T Consensus 260 f~Pc~~~wy~pif~i------~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 260 FSPCVLSWYGPIFGI------DLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred hccHHHHHhHHHHcC------ChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 888888765555543 34566777777777788999999999999999986
No 31
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.14 E-value=8.9e-07 Score=82.90 Aligned_cols=131 Identities=13% Similarity=0.147 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhhhhhhc
Q psy15368 58 QTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIG 137 (522)
Q Consensus 58 ~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (522)
.++..+-+.+++++-.+.++++...|++|+..+....||++++++..+........
T Consensus 4 ~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~------------------------ 59 (242)
T PF00002_consen 4 SIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQ------------------------ 59 (242)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhh------------------------
Confidence 45556666677777777777766668888888888999999998754432111100
Q ss_pred ccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc
Q psy15368 138 IPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFI 217 (522)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~~ 217 (522)
.....-...+..|...+++.+.+..++..-+.+.++|=|..+..+... .+++
T Consensus 60 ------------------------~~~~~~~~~~~~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~~----~~~~ 111 (242)
T PF00002_consen 60 ------------------------TFSPISTTNHCLCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVFNS----SRRR 111 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------ccccccccccccchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEeecc----cchh
Confidence 000110011225999999999999999999999999999999887331 2445
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhe
Q psy15368 218 SKVVSFIAWTASAIFMIPVIMYA 240 (522)
Q Consensus 218 ~~~~i~~~Wi~s~~~~~p~~~~~ 240 (522)
.....++.|.+++++........
T Consensus 112 ~~~~~~~gwg~P~~iv~i~~~~~ 134 (242)
T PF00002_consen 112 FWWYYLIGWGIPALIVVISVAVN 134 (242)
T ss_dssp -----------------------
T ss_pred hheeeeeeecCcceeeeeeeeec
Confidence 56677788999988866554444
No 32
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.91 E-value=0.0057 Score=60.80 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHccccC
Q psy15368 380 TVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAA 421 (522)
Q Consensus 380 ~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~~ 421 (522)
......+......+++.+=|.+-....++.|+++++.+...+
T Consensus 282 ~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~ 323 (365)
T PF03125_consen 282 RTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIR 323 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhh
Confidence 345666777788888999999989999999999998776433
No 33
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.86 E-value=0.0067 Score=59.10 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccch-hhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhh
Q psy15368 54 FFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVT-NMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADE 132 (522)
Q Consensus 54 ~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~-~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
..+-..+..++.++++++....+-.+.++.-+.+.+ .+++.+|..+++=-....-..
T Consensus 20 ~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~---------------------- 77 (328)
T PF02117_consen 20 FRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQ---------------------- 77 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 445556667778888888888888888877777666 556666776664211100000
Q ss_pred hhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy15368 133 CFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITA 209 (522)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~ 209 (522)
.++ +..-+.......+..+...-|.....+..++.....+..+++.+||.+|-..|-.+
T Consensus 78 ----------------~~~--lyrsf~~~~dpC~i~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 78 ----------------IWS--LYRSFFYSDDPCSILFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred ----------------HHH--HHHHHhcCCCCeeeEeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 000 00000011222345567778999998988988889999999999999999888554
No 34
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=97.27 E-value=0.031 Score=54.03 Aligned_cols=170 Identities=10% Similarity=0.060 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhhhhhhhhccchhheehhhccchhhhhhhhhhhhh
Q psy15368 53 LFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADE 132 (522)
Q Consensus 53 ~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~LaiaDll~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
+.........+.+.+..+.+++.++++..+++..+-+..-+.-++++-++..++.....+. .++ ++
T Consensus 7 e~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~--g~~------------~i 72 (328)
T PF01534_consen 7 EKEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFIL--GRE------------SI 72 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhc--cCC------------Cc
Confidence 3444556667777777888888887776655533333444444555554443322111100 000 00
Q ss_pred hhhhcccceeeehhhhhhhHHhhhHhhhcccCCccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q psy15368 133 CFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNL 212 (522)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~ 212 (522)
++-- .............+...|.+...+.+++..++..-.+.+++.-|++....-....+
T Consensus 73 ~C~~--------------------~~~~~~~~~~~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i 132 (328)
T PF01534_consen 73 ACRS--------------------QDGTERILVQDGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAI 132 (328)
T ss_pred CCCc--------------------CCCCceeEeecCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchh
Confidence 0000 00000011122335688999999999999999999999999999998764332222
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHhhheeEEccCCccccccccCCC
Q psy15368 213 RTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPET 258 (522)
Q Consensus 213 ~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~ 258 (522)
. +.....=++.|.++.+..+..+....+..++-...|.....+.
T Consensus 133 -~-~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~ltGiC~Vg~~~~ 176 (328)
T PF01534_consen 133 -E-KKSSYFHLVAWGIPAVLTIAVLALRKVDGDELTGICFVGNQNP 176 (328)
T ss_pred -h-hhcchhhhHHhhhhHHHHHHHHHhcccccccccceeEEeCCCH
Confidence 3 4456667788999999988888888887777778898775443
No 35
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=96.82 E-value=0.018 Score=55.13 Aligned_cols=155 Identities=13% Similarity=0.146 Sum_probs=96.3
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhhhHHHHHHHHHHHHHHhhheeE-EccCC--
Q psy15368 171 DLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASI-IDSEN-- 247 (522)
Q Consensus 171 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~-~~~~~-- 247 (522)
+..-++..++...+.+.+...-++.++-|-+.+..|.++++. .++.....+-++.+.+++.++|.+...+. .+-+.
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf 178 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPF 178 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCC
Confidence 344677888889999999999999999999999999877554 44445666677778888888886654332 11111
Q ss_pred c-cccccccCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhccccccceeeeEEeEeeec
Q psy15368 248 T-KSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTV 326 (522)
Q Consensus 248 ~-~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (522)
. +.-....... ...... ....+.....-++.+++++..+++++|+.+.+....+
T Consensus 179 ~fGAI~I~~~~~---~~~~~~-~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l~~~~--------------------- 233 (307)
T PF10322_consen 179 PFGAIIITSTGS---WFNIRN-SIFHLFFSIFWMISIIILNILMFFKLRKLKSSLSSQR--------------------- 233 (307)
T ss_pred CCCEEEEEEEcc---cccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh---------------------
Confidence 1 0001100000 111111 2223334444567788899999999998763221111
Q ss_pred CCCCCchhhhhhhhhhhhhhHHHHHHHHh
Q psy15368 327 GPKNKPKEKKKSHRKVTKLVLTVITVYVL 355 (522)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~i~~~f~i 355 (522)
++++.+|.|+..+.+++.+.+-++.
T Consensus 234 ----~s~~~~KAE~SLT~Tmi~mliP~i~ 258 (307)
T PF10322_consen 234 ----RSKQSRKAERSLTLTMISMLIPYIT 258 (307)
T ss_pred ----hcccchhhheeHHHHHHHHHHHHHH
Confidence 1234568888888888887765543
No 36
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.27 E-value=0.0097 Score=43.69 Aligned_cols=70 Identities=17% Similarity=0.398 Sum_probs=53.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHhhhh-hHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhccchhHHHHHHcChH
Q psy15368 335 KKKSHRKVTKLVLTVITVYVLCWL-PYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDN 408 (522)
Q Consensus 335 ~~~~~~~~~~~l~~i~~~f~i~~~-P~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~ 408 (522)
++++-+|.++.+++--++|+++|+ |...-......... .....++..++..+..+|+.+|-++|.+.-+.
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~----~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erp 73 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIG----HGPSFWLFCIAGFMQPSQGFVDCLVFTLRERP 73 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCchHHHHHHHHHHHccCHHHhhheeeeccc
Confidence 456778899999999999999999 87766555442211 22245688899999999999999999986543
No 37
>KOG4289|consensus
Probab=96.02 E-value=0.22 Score=55.38 Aligned_cols=36 Identities=8% Similarity=0.226 Sum_probs=28.1
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15368 170 GDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCH 205 (522)
Q Consensus 170 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~ 205 (522)
.++.|.+...+..+...+....+.+-+++-|.+...
T Consensus 2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e 2257 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTE 2257 (2531)
T ss_pred CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 456799998888888777777777778877777765
No 38
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=95.76 E-value=0.5 Score=44.85 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=43.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHH-hhhcCCCC--CCCCccchhhhhHHHHHHHHHHHHHHhhheeE-EccCC
Q psy15368 172 LMCKIYMTTTSINQFTSSIFLTIMSADRYVA-VCHPITAP--NLRTPFISKVVSFIAWTASAIFMIPVIMYASI-IDSEN 247 (522)
Q Consensus 172 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~a-I~~P~~~~--~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~-~~~~~ 247 (522)
..|.+..-+.......-. .+.+++-|.++ |..+.... +..+||+..+=..+++.+.++........... .+--+
T Consensus 57 ~wCDI~~kl~~~~~~g~~--~a~lcI~r~L~~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e 134 (283)
T PF02076_consen 57 VWCDISTKLIIGSSVGIP--AASLCIMRRLYRIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVE 134 (283)
T ss_pred eeeeehHHHHHHHHHHHH--HHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEec
Confidence 889998777776665544 44444555554 33332221 11225556666667777777775554443322 22223
Q ss_pred ccccccc
Q psy15368 248 TKSCNIM 254 (522)
Q Consensus 248 ~~~C~~~ 254 (522)
...|...
T Consensus 135 ~~GC~~~ 141 (283)
T PF02076_consen 135 DVGCYPA 141 (283)
T ss_pred ccCCccC
Confidence 3446544
No 39
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=94.83 E-value=0.35 Score=42.39 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=29.4
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy15368 170 GDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPIT 208 (522)
Q Consensus 170 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~ 208 (522)
.-..|.+..-+........-...+++|++||+-|.+-.|
T Consensus 113 tI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 113 TIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred EEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 667899887766666655555566899999999998644
No 40
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=92.38 E-value=0.091 Score=44.21 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=50.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhhhHHHHHHHHHHHHHHhhhee
Q psy15368 178 MTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYAS 241 (522)
Q Consensus 178 ~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~ 241 (522)
..+..++.....+..++|++||-..|.+|++...+.+.++.++-+.++.++.+...+.+.+...
T Consensus 48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C 111 (153)
T PF03383_consen 48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFSDC 111 (153)
T ss_pred eeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3455566667778889999999999999999777889999999998888887777555555443
No 41
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=92.05 E-value=9.2 Score=34.73 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=41.2
Q ss_pred ccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q psy15368 166 YWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRT 214 (522)
Q Consensus 166 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~t 214 (522)
+-..+...|+.......+....+++.-..+++||++|.....+|.+..+
T Consensus 77 dLiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~ 125 (236)
T PF02175_consen 77 DLIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRT 125 (236)
T ss_pred eEEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCce
Confidence 3445667788899999999999999999999999999999888866433
No 42
>KOG4220|consensus
Probab=80.49 E-value=21 Score=35.33 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=46.2
Q ss_pred hhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHh---cCCCCCCCc---hhHHHHHHHHHHHhhccchhHHHHHHcChHH
Q psy15368 336 KKSHRKVTKLVLTVITVYVLCWLPYWITQIALIF---TPPRQCQSS---ITVIVFLIAGALSYSNSAMNPILYAFLSDNF 409 (522)
Q Consensus 336 ~~~~~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~---~~~~~~~~~---~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~f 409 (522)
+|..+|+..|+..--++-++.|.|..+..=+..- .+++.+..+ .+.+.+-.+..-.|+.-.+=-++|.-..++-
T Consensus 141 kRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret 220 (503)
T KOG4220|consen 141 KRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRET 220 (503)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3555677788888888888999998776433221 111111111 1222223333334445555567888777777
Q ss_pred HHHHHHH
Q psy15368 410 KKSFLKA 416 (522)
Q Consensus 410 R~~l~~~ 416 (522)
|+..+++
T Consensus 221 ~kR~k~~ 227 (503)
T KOG4220|consen 221 RKRQKEL 227 (503)
T ss_pred HHHHHhh
Confidence 7777664
No 43
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=71.91 E-value=93 Score=29.60 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHHHHHhhhhHHHHHHhhhccc-cccchhhHHHHHhhhhh
Q psy15368 51 PTLFFATQTIYLIICITGLLGNTLVIYVVLRFSK-MQTVTNMYIVNLAIADE 101 (522)
Q Consensus 51 ~~~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~-lr~~~~~~l~~LaiaDl 101 (522)
....+..+.++.+++++|++- .+.+..|.++ ..++..++..-+.++.+
T Consensus 25 ~~~~~~La~iy~~v~~~aliQ---l~ri~~r~~~~~~t~qkvf~ll~~l~~~ 73 (281)
T PF06454_consen 25 DGLFYALAAIYLLVALVALIQ---LIRIQYRVPKYGWTTQKVFHLLIFLANL 73 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhheeEeccccCccHHHHHHHHHHHHHH
Confidence 345667777777777777665 2222223222 22444455444444443
No 44
>PHA03235 DNA packaging protein UL33; Provisional
Probab=61.02 E-value=1.4e+02 Score=30.32 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhccchhHHHHHHcChHHHHHHHHHcccc
Q psy15368 382 IVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCA 420 (522)
Q Consensus 382 ~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~l~~~~~c~ 420 (522)
....+...=..+|+.+-.++.--+.+.+|+.+++.+.++
T Consensus 290 i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~l~~~ 328 (409)
T PHA03235 290 LSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGELFSR 328 (409)
T ss_pred HHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 344555566677888888888888888888887765544
No 45
>KOG4219|consensus
Probab=59.14 E-value=1.1e+02 Score=30.44 Aligned_cols=18 Identities=61% Similarity=0.875 Sum_probs=12.0
Q ss_pred hhccchhhhhhhhhhhhh
Q psy15368 115 KMQTVTNMYIVNLAIADE 132 (522)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ 132 (522)
.++..+|+|++||+.||+
T Consensus 65 rMRtvtnyfL~NLAfADl 82 (423)
T KOG4219|consen 65 RMRTVTNYFLVNLAFADL 82 (423)
T ss_pred ehhhhHHHHHHHHHHHHH
Confidence 456666777777777773
No 46
>KOG1056|consensus
Probab=48.15 E-value=3.4e+02 Score=30.37 Aligned_cols=46 Identities=11% Similarity=0.335 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccc-------ccchhhHHHHHhh
Q psy15368 53 LFFATQTIYLIICITGLLGNTLVIYVVLRFSKM-------QTVTNMYIVNLAI 98 (522)
Q Consensus 53 ~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~l-------r~~~~~~l~~Lai 98 (522)
.....+++..++.++|++.-+.++.++.++... |.-.+++|.++.+
T Consensus 557 W~~~~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi~l 609 (878)
T KOG1056|consen 557 WRSPWSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFL 609 (878)
T ss_pred ccccccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHHHHH
Confidence 345567888999999999999999988876543 3444666666544
No 47
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=46.04 E-value=2.6e+02 Score=26.18 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-CCccchhhhhHHHHHHHHHHHHHHhhheeEEccCCccccccccCCCc
Q psy15368 181 TSINQFTSSIFLTIMSADRYVAVCHPITAPNL-RTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETE 259 (522)
Q Consensus 181 ~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~-~t~~~~~~~i~~~Wi~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~ 259 (522)
......+--+.+.++|++|++---.|-.-+.. .++|.....+-.+.++.++-.+....+......+..... .+
T Consensus 89 l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~~~~~-~~----- 162 (267)
T PF10325_consen 89 LYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNESTEE-IE----- 162 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh-hh-----
Confidence 33333444456899999999999999733222 344444444444444444442222222111111110000 00
Q ss_pred ccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy15368 260 NLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGP 299 (522)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~~~~ 299 (522)
.....|....... . +-+.+...+|+-|+..+||.+.
T Consensus 163 --~~~~~~~~~~~~~-~-~ll~~S~lLYIPI~isirK~~~ 198 (267)
T PF10325_consen 163 --TFSYIYVIFYIIL-N-ILLFLSALLYIPIFISIRKLSH 198 (267)
T ss_pred --HHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHHhhc
Confidence 1111222222222 2 2346677899999999987654
No 48
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.28 E-value=29 Score=28.21 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=9.1
Q ss_pred HHhhhhHHHHHHhhhccccccc
Q psy15368 67 TGLLGNTLVIYVVLRFSKMQTV 88 (522)
Q Consensus 67 ~giigN~lvi~vi~~~~~lr~~ 88 (522)
.|++|=++.|+.++++++.|.+
T Consensus 75 aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHHhccCC
Confidence 4455544555554554444443
No 49
>PF13853 7tm_4: Olfactory receptor
Probab=42.60 E-value=3.1 Score=35.13 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=46.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhheeEEccC---Cccccccc--cCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15368 219 KVVSFIAWTASAIFMIPVIMYASIIDSE---NTKSCNIM--WPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRK 293 (522)
Q Consensus 219 ~~~i~~~Wi~s~~~~~p~~~~~~~~~~~---~~~~C~~~--~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~ 293 (522)
..+.+..|+.+++..++........... +...|... .-.-.+......+.........+.|+.+++++|.+|++.
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a 83 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRA 83 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEeh
Confidence 4556677888888877766543221111 11222210 001111133445555566667788999999999999997
Q ss_pred HHhcC
Q psy15368 294 LRTVG 298 (522)
Q Consensus 294 lr~~~ 298 (522)
+.|..
T Consensus 84 vlki~ 88 (144)
T PF13853_consen 84 VLKIP 88 (144)
T ss_pred hhccc
Confidence 77643
No 50
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=40.60 E-value=1.8e+02 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy15368 52 TLFFATQTIYLIICITGLLGNTLVIYV 78 (522)
Q Consensus 52 ~~~~~~~~i~~ii~~~giigN~lvi~v 78 (522)
+-.+++++++.+++.+.++...++..-
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555555544443
No 51
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=38.48 E-value=3.2e+02 Score=25.13 Aligned_cols=16 Identities=38% Similarity=0.221 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15368 187 TSSIFLTIMSADRYVA 202 (522)
Q Consensus 187 ~s~~~l~~isidRy~a 202 (522)
+....+..+..||++.
T Consensus 140 a~l~~l~~~~~D~~v~ 155 (232)
T PF10329_consen 140 AFLSSLWGILADRYVE 155 (232)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444567788899996
No 52
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=34.92 E-value=2.1e+02 Score=25.03 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy15368 277 AIPLVLIFVFYYLVIRKLRT 296 (522)
Q Consensus 277 ~lp~~ii~~~y~~I~~~lr~ 296 (522)
++|.+++.++....++.=.+
T Consensus 2 ~~P~~li~~~s~~~f~~~~~ 21 (237)
T PF02932_consen 2 IIPCILIVVLSWLSFWLPPE 21 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHhheEeCcc
Confidence 57888888888888875543
No 53
>KOG4671|consensus
Probab=32.09 E-value=2.6e+02 Score=24.41 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=44.7
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccc--cchhhHHHHHhhhhhhhhhccchhh
Q psy15368 41 NGTACPHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQ--TVTNMYIVNLAIADECFLIGIPFLM 111 (522)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr--~~~~~~l~~LaiaDll~~l~~p~~~ 111 (522)
+...|+...+.......+..+..-.++.++.|++-+..+....+++ ++...++.-+|+-.+..++.-|...
T Consensus 67 d~~~C~s~~~~~~~~aaAAmL~~g~~i~~I~filgl~~~cv~~~~~fyRvi~~~l~laaV~qi~sLvIyPVk~ 139 (201)
T KOG4671|consen 67 DPGGCQSTLEVDGGRAAAAMLFIGAAILVICFILGLFALCVPLKLVFYRVIGGLLFLAAVLQIISLVIYPVKY 139 (201)
T ss_pred CCccCcChhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeeeHHHHHHHHHHHHHhheeEEeeeee
Confidence 3445666555555555666666668888889999988887755544 5555555555665554555555433
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.87 E-value=48 Score=35.99 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=17.8
Q ss_pred hhhcCCCCCC----CCccchhhhhHHHHHHHHHHH
Q psy15368 203 VCHPITAPNL----RTPFISKVVSFIAWTASAIFM 233 (522)
Q Consensus 203 I~~P~~~~~~----~t~~~~~~~i~~~Wi~s~~~~ 233 (522)
+.+|.+..++ .......+-++++|++.++.-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~d 44 (697)
T PF09726_consen 10 LRRPMKRNKITEGIYGSTFLYVKFLLVWALVLLAD 44 (697)
T ss_pred hccchhhccccccccchHHHHHHHHHHHHHHHHHH
Confidence 4456665433 122235566778888887763
No 55
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=30.65 E-value=97 Score=28.36 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=13.8
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHH
Q psy15368 170 GDLMCKIYMTTTSINQFTSSIFLTI 194 (522)
Q Consensus 170 ~~~~C~~~~~~~~~~~~~s~~~l~~ 194 (522)
++..|.+..++...+.....-.+.+
T Consensus 52 s~~~C~~r~~~~~l~f~l~~~~ll~ 76 (238)
T PF00003_consen 52 SDILCTLRRWLFSLGFTLIFSALLA 76 (238)
T ss_pred CCcEEEEeeeeeeeehHhhhhHHHH
Confidence 3556887776665554444333333
No 56
>PF14118 YfzA: YfzA-like protein
Probab=29.39 E-value=99 Score=23.59 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHhccCcccCCC
Q psy15368 4 LLLISFLLLFLLDLVRGTLLYNS 26 (522)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (522)
..+|+||+...+|.+.-....+.
T Consensus 19 iF~i~QLlFi~~d~t~w~pnf~~ 41 (94)
T PF14118_consen 19 IFLIVQLLFIIFDGTGWGPNFNE 41 (94)
T ss_pred HHHHHHHHHHHhhccccccccCC
Confidence 35789999999998877765554
No 57
>KOG4193|consensus
Probab=25.69 E-value=3.9e+02 Score=28.71 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhhccccccchhhHHHHHhhh
Q psy15368 54 FFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIA 99 (522)
Q Consensus 54 ~~~~~~i~~ii~~~giigN~lvi~vi~~~~~lr~~~~~~l~~Laia 99 (522)
.....++..+-+++++++=.+.+++.+--|++++-.+....+|+++
T Consensus 319 ~~~l~~i~~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~ 364 (610)
T KOG4193|consen 319 TLLLDILSTVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLC 364 (610)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 3344444455555556665566665555455554446566666655
No 58
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=24.01 E-value=1.1e+02 Score=18.57 Aligned_cols=25 Identities=16% Similarity=0.342 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15368 266 AFILYTFILGFAIPLVLIFVFYYLV 290 (522)
Q Consensus 266 ~~~~~~~~~~~~lp~~ii~~~y~~I 290 (522)
...+....++.++|.+.+++.|++.
T Consensus 5 ~lgfiAt~Lfi~iPt~FLlilYvqT 29 (35)
T PRK04989 5 DLGFVASLLFVLVPTVFLIILYIQT 29 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheec
Confidence 3455667777889999999998754
No 59
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.78 E-value=3e+02 Score=30.84 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=23.3
Q ss_pred hhhhhhhHHHHHHHHhhhhhHHHHHHHHHhcC
Q psy15368 340 RKVTKLVLTVITVYVLCWLPYWITQIALIFTP 371 (522)
Q Consensus 340 ~~~~~~l~~i~~~f~i~~~P~~i~~i~~~~~~ 371 (522)
.-..-+++.+.+.|+++|+-..+..+....+.
T Consensus 457 tGg~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G~ 488 (806)
T PF05478_consen 457 TGGNFLMAGVGLSFLFSWFLMLLVLFYFLVGG 488 (806)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888999999988777766655443
No 60
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=23.25 E-value=1.2e+02 Score=18.07 Aligned_cols=25 Identities=16% Similarity=0.374 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15368 266 AFILYTFILGFAIPLVLIFVFYYLV 290 (522)
Q Consensus 266 ~~~~~~~~~~~~lp~~ii~~~y~~I 290 (522)
...+....++..+|.+..++.|++.
T Consensus 5 ~l~fiAt~Lfi~iPt~FLiilYvqT 29 (33)
T TIGR03038 5 ILGFIATLLFILVPTVFLLILYIQT 29 (33)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheec
Confidence 3445666777889999999988753
No 61
>COG3924 Predicted membrane protein [Function unknown]
Probab=21.84 E-value=3.2e+02 Score=19.74 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=25.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15368 264 QSAFILYTFILGFAIPLVLIFVFYYLVIRKLRT 296 (522)
Q Consensus 264 ~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~lr~ 296 (522)
..-+-.++-..++.+|++.+.+|+..|-...|.
T Consensus 39 ~~gfP~WFE~aCi~lPllFi~l~~~mvkfif~D 71 (80)
T COG3924 39 FTGFPLWFEMACILLPLLFIVLCWAMVKFIFRD 71 (80)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 445567778888999999999999887666554
No 62
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=20.85 E-value=2e+02 Score=17.01 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy15368 267 FILYTFILGFAIPLVLIFVFYYLV 290 (522)
Q Consensus 267 ~~~~~~~~~~~lp~~ii~~~y~~I 290 (522)
..+....++..+|.+..++.|++.
T Consensus 6 l~fiAtaLfi~iPt~FLiilyvqT 29 (31)
T PF05151_consen 6 LAFIATALFILIPTAFLIILYVQT 29 (31)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhheEeee
Confidence 345566777888999999998764
No 63
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=20.01 E-value=1e+02 Score=21.39 Aligned_cols=22 Identities=18% Similarity=0.576 Sum_probs=11.0
Q ss_pred hhhhhhhhhhhHHHHHHHHhhh
Q psy15368 336 KKSHRKVTKLVLTVITVYVLCW 357 (522)
Q Consensus 336 ~~~~~~~~~~l~~i~~~f~i~~ 357 (522)
+++.++...++..+++++++-|
T Consensus 32 qk~~~~~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 32 QKRMRKTQYIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554443
Done!