RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15368
(522 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 167 bits (426), Expect = 2e-48
Identities = 83/292 (28%), Positives = 140/292 (47%), Gaps = 48/292 (16%)
Query: 113 TIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDL 172
T K++T TN++++NLA+AD FL+ +P + + WPFGD
Sbjct: 6 TKKLRTPTNIFLLNLAVADLLFLLTLPPWALY----------------YLVGGDWPFGDA 49
Query: 173 MCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIF 232
+CK+ +N + S + LT +S DRY+A+ HP+ +RTP +KV+ + W + +
Sbjct: 50 LCKLVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLL 109
Query: 233 MIPVIMYASIIDSENTK--SCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLV 290
+P ++++ + E +C I +PE + + ++ L + +LGF +PL++I V Y L+
Sbjct: 110 SLPPLLFSWLRTVEEGNVTTCLIDFPE---ESTKRSYTLLSTLLGFVLPLLVILVCYTLI 166
Query: 291 IRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVI 350
+R LR R+ + + K RK K++L V+
Sbjct: 167 LRTLR-------------------------KRARSGASQARAKRSSSKERKAAKMLLVVV 201
Query: 351 TVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILY 402
V+VLCWLPY I + P + LI L+Y NS +NPI+Y
Sbjct: 202 VVFVLCWLPYHIVLLLDSLCPL--SIWRLLPTALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 107 bits (268), Expect = 2e-25
Identities = 92/398 (23%), Positives = 157/398 (39%), Gaps = 108/398 (27%)
Query: 45 CPHSTG-PTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECF 103
C + G T +Y I GL+GN +VIYV L +K++T ++Y++NLA++D F
Sbjct: 30 CDLNIGYDTNSTILIVVYSTIFFFGLVGNIIVIYV-LTKTKIKTPMDIYLLNLAVSDLLF 88
Query: 104 LIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASL 163
++ +PF +Y +YIL
Sbjct: 89 VMTLPF-----------QIY---------------------------YYIL--------- 101
Query: 164 SSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSF 223
W FG+ CKI I + S F+T+MS DRY+A+ HP+ + + T +VS
Sbjct: 102 -FQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSL 160
Query: 224 IAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFI------LGFA 277
+ W S I P++ + T C + + FI +G
Sbjct: 161 VIWIISIIETTPILFVYTTKKDHETLICCMFY-------NNKTMNWKLFINFEINIIGML 213
Query: 278 IPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKK 337
IPL ++ Y ++ L+ + K K
Sbjct: 214 IPLTILLYCYSKILITLKGI------------------------------------NKSK 237
Query: 338 SHRKVTKLVLTVITVYVLCWLPYWITQIAL---IFTPPRQCQ--SSITVIVFLIAGALSY 392
++K KLVL ++ ++V+ WLP+ ++ I C+ I + + +S
Sbjct: 238 KNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALH-VTEIISL 296
Query: 393 SNSAMNPILYAFLSDNF---KKSFLKACTCAAGKDVNA 427
S+ +NP++YAF+S+ F KK LK ++GK ++
Sbjct: 297 SHCCINPLIYAFVSEFFNKHKKKSLKLMFTSSGKSISI 334
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 75.8 bits (186), Expect = 1e-14
Identities = 90/389 (23%), Positives = 162/389 (41%), Gaps = 116/389 (29%)
Query: 51 PTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFL 110
P++ + Y+II I GL GN +I ++ F K
Sbjct: 95 PSISEYIKIFYIIIFILGLFGNAAIIMIL--FCK-------------------------- 126
Query: 111 MITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFG 170
K++T+T++YI NLAI+D F+I PF+ + + W FG
Sbjct: 127 ----KIKTITDIYIFNLAISDLIFVIDFPFI------------------IYNEFDQWIFG 164
Query: 171 DLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASA 230
D MCK+ + I F++ +T+MS DRY A+ +PI+ RT I ++ I+W S
Sbjct: 165 DFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSL 224
Query: 231 IFMIPV--------IMYASIIDSE---NTKSCNIMWPETENLNGQSAFILYTF-ILGFAI 278
I P I++++ +E N + I E N++ + + ILG I
Sbjct: 225 IITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFI 284
Query: 279 PLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKS 338
P ++IF F Y+ K++L K K+ KKS
Sbjct: 285 P-IIIFAFCYI-------------------------KIIL------------KLKQLKKS 306
Query: 339 HRKVTKLVLTVITV-YVLCWLPYWITQIALIFTPPRQCQSSITVI------------VFL 385
+ + +++++I + ++CW+P I ++F + ++I +
Sbjct: 307 KKTKSIIIVSIIIICSLICWIPL---NIVILFATMYSFKGFNSIISEHICGFIKLGYAMM 363
Query: 386 IAGALSYSNSAMNPILYAFLSDNFKKSFL 414
+A A+S ++ +NP++Y + +NF+ L
Sbjct: 364 LAEAISLTHCCINPLIYTLIGENFRMHLL 392
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 64.9 bits (158), Expect = 2e-11
Identities = 86/363 (23%), Positives = 150/363 (41%), Gaps = 102/363 (28%)
Query: 60 IYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTV 119
Y+++ I GL+GN LVI V +I + V
Sbjct: 34 FYILLFIFGLIGNVLVIAV--------------------------------LIVKRFMFV 61
Query: 120 TNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMT 179
++Y+ N+A++D + PF++ H L + W FG+ MCK+ +
Sbjct: 62 VDVYLFNIAMSDLMLVFSFPFII--------HNDL----------NEWIFGEFMCKLVLG 103
Query: 180 TTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMY 239
+ F++ F+T++S DRY+ V + N ++ +S ++S AW S I +P ++
Sbjct: 104 VYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVL 162
Query: 240 ASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGP 299
+ +++N K C I EN + + F I G IPL+++ Y ++ L+
Sbjct: 163 YYVDNTDNLKQC-IFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN 221
Query: 300 KNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLP 359
KNK + K++LTV+T V+ W+P
Sbjct: 222 KNKTRS-------------------------------------IKIILTVVTFTVVFWVP 244
Query: 360 YWITQIALIFTPPRQCQSSITV-------IVFLI--AGALSYSNSAMNPILYAFLSDNFK 410
+ ++F Q I + IV+ I A +S+ + +NPI+YAF+ NFK
Sbjct: 245 F----NIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFK 300
Query: 411 KSF 413
K F
Sbjct: 301 KVF 303
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 36.8 bits (86), Expect = 0.017
Identities = 62/359 (17%), Positives = 115/359 (32%), Gaps = 116/359 (32%)
Query: 65 CITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIG-IPFLMITIKMQTVTNMY 123
+ G+ GN ++I + + K+++ + I +AD L G I F+++ +T
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLLFTGTQLTR-- 58
Query: 124 IVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSI 183
+ECFLI IP
Sbjct: 59 -------NECFLIIIP-----------------------------------------YIF 70
Query: 184 NQFTSSIFLTIMSADRYVAVCHPITAPNL-RTPFISKVVSFIAWTASAIFMIPVIMYASI 242
Q S + ++ DR +AV PI L + ++ I +I ++Y+S
Sbjct: 71 GQTAQSPLMLMIGIDRLIAVKFPIFYRLLSSSKYLF------------IQLIFPVIYSSF 118
Query: 243 I--------DSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKL 294
I D E C LNG AF ++T I ++++ V+ L+I
Sbjct: 119 ILVYGFLERDDETIIVCAPP----LALNGT-AFRIFTL-SSVIINVIVLIVYIILIIIF- 171
Query: 295 RTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYV 354
K K + +KV K + + +++
Sbjct: 172 ----------------------------------KKKGQTTNSDSKKVFKSLQVTVIIFI 197
Query: 355 LCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
W + IA + I+ + AG + + N + + S ++K+F
Sbjct: 198 FGWF---TSTIANTVFLLLTEDGEVENIIQMYAGIFVNLSFSQNFFVTYWRSSEYRKAF 253
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 34.4 bits (79), Expect = 0.14
Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 45/220 (20%)
Query: 104 LIGIPFLMITIKMQTVTN---------MYIVNLAIADECFLIGIPFLMITMSISYWHYIL 154
+G P +I + Q + N +Y+ NL +A+ + +PF+M+ S +
Sbjct: 44 SVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFIML----SNQGLLS 99
Query: 155 VSLFRVASLSSYWPFGDLMCK----IYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAP 210
S+ CK +Y + ++ T + +++ADRY V H T
Sbjct: 100 GSV--------------AGCKFASLLYYASCTVGFAT----VALIAADRY-RVIHQRTRA 140
Query: 211 NLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENT-------KSCNIMWPETENLNG 263
+ + + W AS I P +Y +++ ++ ++C I + +
Sbjct: 141 RSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTV 200
Query: 264 QSAF-ILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNK 302
S F +L T + G P+V++ FY R L+ K +
Sbjct: 201 LSTFKVLLTLVWG-IAPVVMMTWFYTFFYRTLKRASYKKR 239
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 34.1 bits (79), Expect = 0.16
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 290 VIRKLRTVGPKNK-PKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRK 341
VI +LR PK K P EKK K +K VL + K KPK KK+ HR
Sbjct: 372 VIDELR---PKTKAPSEKKTG--KPSKKVLAKRAEKKEKEKEKPKVKKR-HRD 418
>gnl|CDD|217394 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family.
N-linked (asparagine-linked) glycosylation of proteins
is mediated by a highly conserved pathway in eukaryotes,
in which a lipid (dolichol phosphate)-linked
oligosaccharide is assembled at the endoplasmic
reticulum membrane prior to the transfer of the
oligosaccharide moiety to the target asparagine
residues. This oligosaccharide is composed of
Glc(3)Man(9)GlcNAc(2). The addition of the three glucose
residues is the final series of steps in the synthesis
of the oligosaccharide precursor. Alg6 transfers the
first glucose residue, and Alg8 transfers the second
one. In the human alg6 gene, a C->T transition, which
causes Ala333 to be replaced with Val, has been
identified as the cause of a congenital disorder of
glycosylation, designated as type Ic OMIM:603147.
Length = 463
Score = 32.7 bits (75), Expect = 0.50
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 331 KPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQ 364
K + S ++ KL L V+ + + +LP+ +
Sbjct: 206 NKKNFRNSFARILKLALVVVGTFAIIFLPFLYLK 239
>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional.
Length = 338
Score = 32.2 bits (73), Expect = 0.55
Identities = 59/342 (17%), Positives = 120/342 (35%), Gaps = 76/342 (22%)
Query: 84 KMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMI 143
+++ N ++ L I +I + + T+ Y++ L +D
Sbjct: 33 ILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASD------------ 80
Query: 144 TMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAV 203
+ ++L R A + F C+ + + S L I++ RY +
Sbjct: 81 --FLHMLCVFFLTLNREALFN----FNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTL 134
Query: 204 CHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTK-SCNIMWPETENLN 262
H + + I + + I + ASA+ IP ++ + CNI +++
Sbjct: 135 -HRRKKNDKKNNHIGRNIG-ILFLASAMCAIPAALFVKTEGKKGNYGKCNI------HIS 186
Query: 263 GQSAF-------ILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTK 315
+ A+ I++ FI G I +IF F+Y++ K
Sbjct: 187 SKKAYDLFIAIKIVFCFIWG--IFPTMIFSFFYVIFCK---------------------- 222
Query: 316 LVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPY---WITQIALIFTPP 372
L + +K H+K + +I ++ +P I +IA ++
Sbjct: 223 ------ALHAL--------TEKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIAN 268
Query: 373 RQCQSSITV-IVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
C I+ +I + + NP++YAF +F+ F
Sbjct: 269 NSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRF 310
>gnl|CDD|224775 COG1862, YajC, Preprotein translocase subunit YajC [Intracellular
trafficking and secretion].
Length = 97
Score = 29.9 bits (68), Expect = 0.74
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 273 ILGFAIPLVLIF-VFYYLVIRKLRTVGPKNKPKEKKKSHRKVTK 315
L +PLVLIF +FY+L+IR R + KE ++ + K
Sbjct: 8 GLVLLLPLVLIFAIFYFLIIRPQRK-----RMKEHQELLNSLKK 46
>gnl|CDD|233109 TIGR00739, yajC, preprotein translocase, YajC subunit. While this
protein is part of the preprotein translocase in
Escherichia coli, it is not essential for viability or
protein secretion. The N-terminus region contains a
predicted membrane-spanning region followed by a region
consisting almost entirely of residues with charged
(acidic, basic, or zwitterionic) side chains. This small
protein is about 100 residues in length, and is
restricted to bacteria; however, this protein is absent
from some lineages, including spirochetes and
Mycoplasmas [Protein fate, Protein and peptide secretion
and trafficking].
Length = 84
Score = 28.4 bits (64), Expect = 1.9
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 273 ILGFAIPLVLIF-VFYYLVIRKLRTVGPKNKP-KEKKKSHRKVTK 315
L +PLVLIF +FY+L+IR P+ K K KK + K
Sbjct: 2 FLTTLLPLVLIFLIFYFLIIR------PQRKRRKAHKKLIESLKK 40
>gnl|CDD|185216 PRK15316, PRK15316, RatA-like protein; Provisional.
Length = 2683
Score = 30.8 bits (69), Expect = 2.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 453 TRPRGAATSSRPD---EECNEIGSRGGQSTTALTSR 485
RPR AA PD E NE+ SR Q+ + TS+
Sbjct: 878 ARPRLAAEVFSPDGTLTENNEVWSRVSQANASSTSK 913
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 30.6 bits (69), Expect = 2.7
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 14/115 (12%)
Query: 1 MGKLLLISFLLLFLLDLVRGTLLYNSNFT--DPSLDF----LNDTFNGTACPHSTGPT-- 52
+ K+L+ + +++ V + + T D ++ F D FN AC T
Sbjct: 757 IKKILVSAIIIVVGTLFVFVREMQDGVITARDTTMTFTCFVFFDMFNALACRSQTKSVFE 816
Query: 53 LFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGI 107
+ F + ++ ++G LVIY S QT L+I D FL+ I
Sbjct: 817 IGFFSNRMFNYAVGGSIIGQLLVIYFPPLQSVFQTEA------LSIKDLLFLLLI 865
>gnl|CDD|221522 pfam12309, KBP_C, KIF-1 binding protein C terminal. This family of
proteins is found in bacteria and eukaryotes. Proteins
in this family are typically between 365 and 621 amino
acids in length. There is a conserved LLP sequence
motif. KBP is a binding partner for KIF1Balpha that is a
regulator of its transport function and thus represents
a type of kinesin interacting protein.
Length = 365
Score = 30.0 bits (68), Expect = 3.3
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 13/74 (17%)
Query: 143 ITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVA 202
T+ ILV+ F +A L S D K+ + S+ + + V
Sbjct: 283 ETLDEDELRPILVAKFHIARLYSKLITADPKEKLENLSKSLEYYK-----------QIVD 331
Query: 203 VC--HPITAPNLRT 214
C HP A + T
Sbjct: 332 YCEAHPEAAKGVET 345
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 28.9 bits (65), Expect = 3.5
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 244 DSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRT 296
+ E T S + E E S + + +L+ Y +IRK++
Sbjct: 102 EYEQTSSSSESTSEEETKKTSSILLPVLYAGLI----LLLAAGIYFLIRKVKD 150
>gnl|CDD|223548 COG0472, Rfe, UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane].
Length = 319
Score = 29.5 bits (67), Expect = 3.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 271 TFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVT 314
TF I V+ + ++I+ LR +G + P++ KSH+K T
Sbjct: 4 TFRAALIISFVISLILTPILIKFLRKLGLGDIPEDGPKSHKKGT 47
>gnl|CDD|188368 TIGR03679, arCOG00187, arCOG00187 universal archaeal
metal-binding-domain/4Fe-4S-binding-domain containing
ABC transporter, ATP-binding protein. This protein
consists of an N-terminal possible metal-binding domain
(pfam04068) followed by a 4Fe-4S cluster binding domain
(pfam00037) followed by a C-terminal ABC transporter,
ATP-binding domain (pfam00005). This combination of
N-terminal domains is observed in the RNase L inhibitor,
RLI. This model has the same scope as an archaeal COG
(arCOG00187) and is found in all completely sequenced
archaea and does not recognize any known non-archaeal
genes.
Length = 218
Score = 29.2 bits (66), Expect = 4.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 422 GKDVNATLH--LEN--SVTCLNSVFPRKRNSERYHT 453
GKD N L+ LE VTCL +V P +S +HT
Sbjct: 7 GKDSNYALYKALEEGHEVTCLITVVPENEDSYMFHT 42
>gnl|CDD|235518 PRK05585, yajC, preprotein translocase subunit YajC; Validated.
Length = 106
Score = 27.6 bits (62), Expect = 6.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 10/41 (24%)
Query: 273 ILGFAIPLVLIF-VFYYLVIRKLRTVGPKNKPKEKKKSHRK 312
L +PLV+ F +FY+L+IR P+ K ++K H+K
Sbjct: 17 GLSSLLPLVVFFAIFYFLIIR------PQQK---RQKEHKK 48
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 28.7 bits (65), Expect = 7.0
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 46/178 (25%)
Query: 62 LIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTN 121
+I + G++ N L+ Y+ L+ ++ + N AI++ FL + M
Sbjct: 1 FLISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTI--FLFYVVPMT---- 54
Query: 122 MYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTT 181
L+ + FL + + + L Y
Sbjct: 55 -------------LLDLSFL--------PELLNSHIGGLILLGLY--------------- 78
Query: 182 SINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMY 239
I+ T ++S +R+ AV P + + +K++ W + I
Sbjct: 79 EISPLTH----LLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIWIIAIIISTLFYFP 132
>gnl|CDD|221295 pfam11893, DUF3413, Domain of unknown function (DUF3413). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 250
amino acids in length. This domain is found associated
with pfam00884.
Length = 253
Score = 28.4 bits (64), Expect = 7.6
Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 17/148 (11%)
Query: 167 WPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAW 226
WP L+ +Y+ + I F+ FL Y+ V P++ + + + IA
Sbjct: 43 WP-ETLLGWLYLLVSLIGHFS---FLAFAL---YLLVLFPLSFIIPPRRLLRGLAAIIAT 95
Query: 227 TASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVF 286
+ +I ++A + +++ G+ + + I L+L +
Sbjct: 96 LGLTLLLIDTEVFAQYRFHLSPVVWDLLLSG---EQGELSVEWQLLFIVVPIILLLELLL 152
Query: 287 YYLVIRKLRTVGPKNKPKEKKKSHRKVT 314
+ +KLR +KKK R V
Sbjct: 153 ANWLWKKLR-------KLKKKKLGRPVA 173
>gnl|CDD|200378 TIGR04127, flavo_near_exo, exosortase F-associated protein.
Members of this protein family are always found next to
an exosortase/archaeosortase-like protein, and occur so
far only in the flavobacteria, within the
Bacteroidetes. Members do not have an obvious
PEP-CTERM-like C-terminal protein sorting domain.
Length = 136
Score = 27.6 bits (62), Expect = 8.7
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 5 LLISFLLLFLLDLVRGTLLYNSNFTDPSLDFLNDTFNGTACPHSTGPTLFFATQTIYLII 64
+L+ LLL L LVR N F DP LDF + + P LF YL+
Sbjct: 2 ILLIGLLLVGLVLVR--FFENDLFYDPLLDFFHSDYKNADLPEFDLGKLFANLSFRYLLN 59
Query: 65 CITGLLGNTLVIYVVLR 81
+ L L+IY++ +
Sbjct: 60 TLLSL----LIIYILFK 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.411
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,518,299
Number of extensions: 2469223
Number of successful extensions: 4121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4049
Number of HSP's successfully gapped: 157
Length of query: 522
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 421
Effective length of database: 6,457,848
Effective search space: 2718754008
Effective search space used: 2718754008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)