RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15368
(522 letters)
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 313 bits (803), Expect = e-102
Identities = 118/400 (29%), Positives = 175/400 (43%), Gaps = 83/400 (20%)
Query: 25 NSNFTDPSLDFLNDTFNGTACPHSTG---PTLFFATQTIYLIICITGLLGNTLVIYVVLR 81
+ + L T N + L +YL +C+ GLLGN LV+YV+LR
Sbjct: 93 KVKEAQAAAEQLKTTRNAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILR 152
Query: 82 FSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFL 141
+KM+T TN+YI NLA+AD L+ +PF I
Sbjct: 153 HTKMKTATNIYIFNLALADTLVLLTLPFQGTDI--------------------------- 185
Query: 142 MITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYV 201
L +WPFG+ +CK + N FTS+ LT MS DRYV
Sbjct: 186 ---------------------LLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYV 224
Query: 202 AVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENL 261
A+CHPI A ++RT ++ V+ W +++ +PV + S + C + P ++
Sbjct: 225 AICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDY 284
Query: 262 NGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVI 321
F + F+ F +P+++I V Y L+IR+
Sbjct: 285 -WGPVFAICIFLFSFIVPVLVISVCYSLMIRR---------------------------- 315
Query: 322 TLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITV 381
LR V + +EK ++ R++T+LVL V+ V+V CW P + +A Q S V
Sbjct: 316 -LRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGV--QPSSETAV 372
Query: 382 IVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAA 421
+ AL Y NS +NPILYAFL +NFK F K C +A
Sbjct: 373 AILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASA 412
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 289 bits (741), Expect = 8e-94
Identities = 83/413 (20%), Positives = 145/413 (35%), Gaps = 77/413 (18%)
Query: 26 SNFTDPSLDFL-NDTFNGTACPHSTGPTLFFATQTI-YLIICITGLLGNTLVIYVVLRFS 83
N D N + N + P Y +I +T ++GN +V++++L
Sbjct: 2 DNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHK 61
Query: 84 KMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMI 143
+M+TVTN ++VNLA A+
Sbjct: 62 RMRTVTNYFLVNLAFAEASMA------------------------------AFNTVVNFT 91
Query: 144 TMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAV 203
+ + W +G CK + F S +T ++ DRY+A+
Sbjct: 92 YA-----------------VHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAI 134
Query: 204 CHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNG 263
HP+ + +KVV + W + + P Y++ + C I WPE N
Sbjct: 135 IHPLQP--RLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIY 192
Query: 264 QSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITL 323
+ + + +L + +PL++I Y +V L
Sbjct: 193 EKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIP----------------------- 229
Query: 324 RTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIV 383
++ E+ + RKV K+++ V+ + +CWLP+ I + P V
Sbjct: 230 --GDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLY-LKKFIQQV 286
Query: 384 FLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAAGKDVNATLHLENSVT 436
+L L+ S++ NPI+Y L+D F+ F A C LE T
Sbjct: 287 YLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKST 339
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 228 bits (583), Expect = 2e-70
Identities = 77/424 (18%), Positives = 147/424 (34%), Gaps = 89/424 (20%)
Query: 26 SNFTDPSLDFLNDTFNGTACP-----HSTGPTLFFATQTIYLIICITGLLGNTLVIYVVL 80
NF P F N T + + P F ++ + G N L +YV +
Sbjct: 8 PNFYVP---FSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTV 64
Query: 81 RFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPF 140
+ K++T N ++NLA+AD M+ G
Sbjct: 65 QHKKLRTPLNYILLNLAVAD--------LFMV----------------------FGGFTT 94
Query: 141 LMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRY 200
+ T SL Y+ FG C + ++ + L +++ +RY
Sbjct: 95 TLYT-----------------SLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERY 137
Query: 201 VAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTK-SCNIMWPETE 259
V VC P++ V+F W + P ++ S E + SC I +
Sbjct: 138 VVVCKPMSNFRFGENHAIMGVAFT-WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPH 196
Query: 260 NLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLT 319
+F++Y F++ F IPL++IF Y ++ ++ + + +
Sbjct: 197 EETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQ----------- 245
Query: 320 VITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSI 379
K+ ++VT++V+ ++ +++CWLPY + S
Sbjct: 246 -----------------KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG----SDF 284
Query: 380 TVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAAGKDVNATLHLENSVTCLN 439
I I + +++ NP++Y ++ F+ + C + S T +
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETS 344
Query: 440 SVFP 443
V P
Sbjct: 345 QVAP 348
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 220 bits (562), Expect = 2e-66
Identities = 68/370 (18%), Positives = 137/370 (37%), Gaps = 69/370 (18%)
Query: 51 PTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFL 110
++++ I I G GN +VIY+ + +QT NM+I+NLA +D F
Sbjct: 31 DAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSD--------FT 82
Query: 111 MITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFG 170
+ G P + I+ W FG
Sbjct: 83 F---------------------SLVNGFPLMTIS-----------------CFLKKWIFG 104
Query: 171 DLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASA 230
CK+Y I F S + + ++S DRY + P+ A + + ++ W S
Sbjct: 105 FAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSV 164
Query: 231 IFMIPVIMYASIIDSE-NTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYL 289
++ I I E +C+ + + + +S IL FILGF P+++IF Y+
Sbjct: 165 LWAIGPIFGWGAYTLEGVLCNCSFDYI-SRDSTTRS-NILCMFILGFFGPILIIFFCYFN 222
Query: 290 VIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTV 349
++ + + K+ + K + + ++ K+ + +
Sbjct: 223 IVMSVSNHEKEMAAMAKRLN----------------AKELRKAQAGANAEMRLAKISIVI 266
Query: 350 ITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNF 409
++ ++L W PY + + F P +T + + +++ NP++Y+ F
Sbjct: 267 VSQFLLSWSPYAVVALLAQFGP----LEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKF 322
Query: 410 KKSFLKACTC 419
+++ +
Sbjct: 323 REAISQTFPW 332
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 220 bits (561), Expect = 5e-66
Identities = 97/469 (20%), Positives = 167/469 (35%), Gaps = 100/469 (21%)
Query: 41 NGTACPHSTGPTLFFA--TQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAI 98
+ + CP + P++ A +Y I+C+ GL GN LV+YV++R++KM+T TN+YI NLA+
Sbjct: 2 SHSLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLAL 61
Query: 99 ADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLF 158
AD +PF + M
Sbjct: 62 ADALATSTLPFQSVNYLM------------------------------------------ 79
Query: 159 RVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFIS 218
WPFG+++CKI ++ N FTS L MS DRY+AVCHP+ A + RTP +
Sbjct: 80 ------GTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNA 133
Query: 219 KVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAI 278
K+V+ W S+ +PV+ A+ + + C + + ++ + FI F +
Sbjct: 134 KIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSH-PTWYWENLLKICVFIFAFIM 192
Query: 279 PLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKS 338
P+++I V Y L+I +L+ ++
Sbjct: 193 PVLIITVCYGLMILRLK---------------------------------------SVRN 213
Query: 339 HRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMN 398
++ ++ + Y+ I + T ++ + + + +
Sbjct: 214 IFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLNAAKSEL------DKAIGRNTNG 267
Query: 399 PILYAFLSDNFKKSFLKACT----CAAGKDVNATLHLENSVTCLNSVFPRKRNSERYHTR 454
I F + A A K V +L +N VF T
Sbjct: 268 VITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTN 327
Query: 455 PRGAATSSRPDEECNEIGSRGGQSTTALTSRSNITMSTDSGVAMGTKDQ 503
R DE + + T ++ IT KD+
Sbjct: 328 SLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYEKDR 376
Score = 96.6 bits (240), Expect = 1e-21
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 307 KKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIA 366
K T + EK ++ R++T++VL V+ V+++CW P I
Sbjct: 346 KSRWYNQTPNRAKRVITTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYV-- 403
Query: 367 LIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCAA 421
+I +++ + + AL Y+NS +NP+LYAFL +NFK+ F + C +
Sbjct: 404 IIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTS 458
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 211 bits (539), Expect = 2e-62
Identities = 66/396 (16%), Positives = 131/396 (33%), Gaps = 100/396 (25%)
Query: 21 TLLYNSNFTDPSLDFLNDTFNGTACPHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVL 80
++ + N+T+ D+ TIY II +TG++GN LVI V+
Sbjct: 15 SIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMG 74
Query: 81 RFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPF 140
K++++T+ Y ++L++AD F+I +PF +
Sbjct: 75 YQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVAN----------------------- 111
Query: 141 LMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRY 200
W FG+ +CK ++N ++S L +S DRY
Sbjct: 112 --------------------------WYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRY 145
Query: 201 VAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETEN 260
+A+ H + R KVV W + + IP ++A++ ++++ C+ +P
Sbjct: 146 LAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPND-- 203
Query: 261 LNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTV 320
F ++G +P ++I Y ++I KL G + ++
Sbjct: 204 -LWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRL------- 255
Query: 321 ITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSIT 380
Y+ I + T ++ +
Sbjct: 256 -------------------------------KIYKDTEGYYTIGIGHLLTKSPSLNAAKS 284
Query: 381 VIVFLIA----GALSYS------NSAMNPILYAFLS 406
+ I G ++ N ++ + L
Sbjct: 285 ELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR 320
Score = 89.6 bits (222), Expect = 3e-19
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 319 TVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQI----ALIFTPPRQ 374
VIT G + K RK K + +I + CWLPY+I L+ +
Sbjct: 388 RVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQG 447
Query: 375 CQSSITVIVFL-IAGALSYSNSAMNPILYAFLSDNFKKSFLKACTCA 420
C+ TV ++ I AL++ + +NPILYAFL FK S A T
Sbjct: 448 CEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSG 494
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 177 bits (450), Expect = 1e-49
Identities = 81/396 (20%), Positives = 149/396 (37%), Gaps = 59/396 (14%)
Query: 26 SNFTDPSLDFLNDTF-NGTACPHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSK 84
N T + TF GT ++ + +I + + GN LVI + +F +
Sbjct: 153 YNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFER 212
Query: 85 MQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMIT 144
+QTVTN +I +LA AD ++G L +PF
Sbjct: 213 LQTVTNYFITSLACAD--LVMG----------------------------LAVVPFGAAH 242
Query: 145 MSISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIF-LTIMSADRYVAV 203
L+ W FG+ C+ + T+ + T+SI L +++ DRY A+
Sbjct: 243 -----------------ILTKTWTFGNFWCEFW-TSIDVLCVTASIETLCVIAVDRYFAI 284
Query: 204 CHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNG 263
P +L T ++V+ + W S + I + +
Sbjct: 285 TSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFT 344
Query: 264 QSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITL 323
A+ + + I+ F +PLV++ Y V ++ + + + +K + V L
Sbjct: 345 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR---QLQKIDKSEGRFHVQNLSQVEQDG 401
Query: 324 RTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIV 383
RT + + K K + ++ + LCWLP++I I + + I V
Sbjct: 402 RTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-----QDNLIRKEV 456
Query: 384 FLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTC 419
+++ + Y NS NP++Y D F+ +F +
Sbjct: 457 YILLNWIGYVNSGFNPLIYCRSPD-FRIAFQELLCL 491
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 157 bits (398), Expect = 5e-44
Identities = 79/362 (21%), Positives = 144/362 (39%), Gaps = 77/362 (21%)
Query: 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQT 118
+ ++ + + GN LVI + ++QT+TN++I +LA AD ++G
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACAD--LVVG------------ 61
Query: 119 VTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYM 178
L+ +PF + W +G +C+++
Sbjct: 62 ----------------LLVVPFGATL-----------------VVRGTWLWGSFLCELW- 87
Query: 179 TTTSINQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVI 237
T+ + T+SI L +++ DRY+A+ P +L T +KV+ W SA+ I
Sbjct: 88 TSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPI 147
Query: 238 MYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTV 297
M D + P + A+ + + I+ F IPL+++ V R+ +
Sbjct: 148 MMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQ 207
Query: 298 GPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCW 357
K K+K+ R + K K + ++ V+ LCW
Sbjct: 208 IRKIDRASKRKTSRVM----------------------LMREHKALKTLGIIMGVFTLCW 245
Query: 358 LPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKAC 417
LP+++ I +F + + +F+ L Y+NSAMNPI+Y D F+K+F +
Sbjct: 246 LPFFLVNIVNVF-----NRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPD-FRKAFKRLL 299
Query: 418 TC 419
Sbjct: 300 AF 301
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 124 bits (313), Expect = 5e-31
Identities = 57/317 (17%), Positives = 105/317 (33%), Gaps = 61/317 (19%)
Query: 34 DFLNDTFNGTACPHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYI 93
D+ +D + T+ L I + +LGN LV + V S +Q VTN ++
Sbjct: 1 DYKDDDDAMGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFV 60
Query: 94 VNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYI 153
V+LA AD +G ++ IPF
Sbjct: 61 VSLAAAD--IAVG----------------------------VLAIPF------------- 77
Query: 154 LVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIF-LTIMSADRYVAVCHPITAPNL 212
++S+ + C + SSIF L ++ DRY+A+ P+ L
Sbjct: 78 ------AITISTGFCAACHGCLFIACFVLVLT-QSSIFSLLAIAIDRYIAIRIPLRYNGL 130
Query: 213 RTPFISKVVSFIAWTASAIFMIPVIMY-----ASIIDSENTKSCNIMWPET--ENLNGQS 265
T +K + I W S + ++ +++ C E++ +
Sbjct: 131 VTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMN 190
Query: 266 AFILYTFILGFAIPLVLIFVFY---YLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVIT 322
+ + F +PL+L+ Y +L R+ + + E + I
Sbjct: 191 YMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIG 250
Query: 323 LRTVGPKNKPKEKKKSH 339
+ + K+ KS
Sbjct: 251 IGHLLTKSPSLNAAKSE 267
Score = 75.2 bits (184), Expect = 1e-14
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Query: 300 KNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLP 359
K + + + VIT G + + + K + ++ ++ LCWLP
Sbjct: 351 AAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLP 410
Query: 360 YWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTC 419
I F P S + + +A LS++NS +NP +YA+ F+++F K
Sbjct: 411 LHIINCFTFFCPD---CSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRS 467
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 123 bits (310), Expect = 1e-30
Identities = 49/290 (16%), Positives = 96/290 (33%), Gaps = 55/290 (18%)
Query: 26 SNFTDPSLDFLNDTFNGTACPHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKM 85
N + L + +I + + GN LVI + +F ++
Sbjct: 12 GNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERL 71
Query: 86 QTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITM 145
QTVTN +I +LA AD ++G+ ++
Sbjct: 72 QTVTNYFITSLACAD---------------------------------LVMGL--AVVPF 96
Query: 146 SISYWHYILVSLFRVASLSSYWPFGDLMCKIYMT---TTSINQFTSSIF-LTIMSADRYV 201
++ L W FG+ C+ + + T+SI L +++ DRY
Sbjct: 97 GAAH------------ILMKMWTFGNFWCEFWTSIDVLCV----TASIETLCVIAVDRYF 140
Query: 202 AVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENL 261
A+ P +L T ++V+ + W S + I + +
Sbjct: 141 AITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDF 200
Query: 262 NGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHR 311
A+ + + I+ F +PLV++ Y V ++ + + + R
Sbjct: 201 FTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLR 250
Score = 65.9 bits (160), Expect = 1e-11
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 331 KPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGAL 390
+ K K + ++ + LCWLP++I I + + I V+++ +
Sbjct: 395 DAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-----QDNLIRKEVYILLNWI 449
Query: 391 SYSNSAMNPILYAFLSDNFKKSFLKACTC 419
Y NS NP++Y S +F+ +F +
Sbjct: 450 GYVNSGFNPLIYCR-SPDFRIAFQELLCL 477
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 120 bits (302), Expect = 1e-29
Identities = 65/403 (16%), Positives = 132/403 (32%), Gaps = 59/403 (14%)
Query: 59 TIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQT 118
+ IC+ + N LV+Y V K+ TV N+YIV+L++AD
Sbjct: 13 VVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVAD------------------ 54
Query: 119 VTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSYWPFGDLMCKIYM 178
++G +++ M+I Y L S W G +C ++
Sbjct: 55 ---------------LIVGA--VVMPMNILY------------LLMSKWSLGRPLCLFWL 85
Query: 179 T---TTSINQFTSSIF-LTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMI 234
+ S T+SIF + I+ DRY +V P+ RT + AW S +++I
Sbjct: 86 SMDYVAS----TASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVI 141
Query: 235 PVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKL 294
P++ + + + + + + + F + T I+ F +P +L+ FY + + +
Sbjct: 142 PILGWNHFMQQTSVRRED---KCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAV 198
Query: 295 R-TVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVY 353
R + + K+ K T+ K + ++ K +
Sbjct: 199 RQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGV 258
Query: 354 VLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSF 413
+ + + +++ V+ A+ + +
Sbjct: 259 ITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNS 318
Query: 414 LKACTCAAGKDVNATLHLENSVTCLNSVFPRKRNSERYHTRPR 456
L+ + L + R + R T
Sbjct: 319 LRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA 361
Score = 70.5 bits (172), Expect = 3e-13
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 329 KNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAG 388
RK K + ++ ++LCW+PY+I + + F C++ + +
Sbjct: 358 TWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAF-----CKNCCNEHLHMFTI 412
Query: 389 ALSYSNSAMNPILYAFLSDNFKKSFLKACTC 419
L Y NS +NP++Y ++NFKK+F +
Sbjct: 413 WLGYINSTLNPLIYPLCNENFKKTFKRILHI 443
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 119 bits (300), Expect = 2e-29
Identities = 58/316 (18%), Positives = 111/316 (35%), Gaps = 65/316 (20%)
Query: 37 NDTFNGTACPHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNL 96
+ + N A + + + ++GN LV+ + +QTV N ++ +L
Sbjct: 6 DSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSL 65
Query: 97 AIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVS 156
A AD +IG+ + + Y
Sbjct: 66 ACAD---------------------------------LIIGV--FSMNLYTLY------- 83
Query: 157 LFRVASLSSYWPFGDLMCKIYMT---TTSINQFTSSIF-LTIMSADRYVAVCHPITAPNL 212
++ YWP G ++C +++ S +S+ L I+S DRY V P+T P
Sbjct: 84 -----TVIGYWPLGPVVCDLWLALDYVVS----NASVMNLLIISFDRYFCVTKPLTYPVK 134
Query: 213 RTPFISKVVSFIAWTASAIFMIPVIM---YASIIDSENTKSCNIMWPETENLNGQSAFIL 269
RT ++ ++ AW S I P I+ + + + C I +A
Sbjct: 135 RTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYI------QFFSNAAVTF 188
Query: 270 YTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHR-KVTKLVLTVITLRTVGP 328
T I F +P++++ V Y+ + R ++ + + R K+ K T+
Sbjct: 189 GTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHL 248
Query: 329 KNKPKEKKKSHRKVTK 344
K + ++ K
Sbjct: 249 LTKSPSLNAAKSELDK 264
Score = 69.0 bits (168), Expect = 1e-12
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 331 KPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGAL 390
+KVT+ +L ++ +++ W PY + + F C I V+ I L
Sbjct: 375 DAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTF-----CAPCIPNTVWTIGYWL 429
Query: 391 SYSNSAMNPILYAFLSDNFKKSFLKACTC 419
Y NS +NP YA + FKK+F C
Sbjct: 430 CYINSTINPACYALCNATFKKTFKHLLMC 458
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 115 bits (289), Expect = 5e-28
Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 71/278 (25%)
Query: 31 PSLDFLNDTFNGTACPHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTN 90
L F + + P G +++ + L I + +LGN LV + V S +Q VTN
Sbjct: 11 FCLVFADYKDDDDGAPPIMGSSVYIT---VELAIAVLAILGNVLVCWAVWLNSNLQNVTN 67
Query: 91 MYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYW 150
++V+LA AD +G ++ IPF
Sbjct: 68 YFVVSLAAAD--IAVG----------------------------VLAIPF---------- 87
Query: 151 HYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQF-----TSSIF-LTIMSADRYVAVC 204
++S+ + C F SSIF L ++ DRY+A+
Sbjct: 88 ---------AITISTGFCAACHGCLFIAC------FVLVLTQSSIFSLLAIAIDRYIAIR 132
Query: 205 HPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMY-----ASIIDSENTKSCNIMWPET- 258
P+ L T +K + I W S + ++ +++ C
Sbjct: 133 IPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACL 192
Query: 259 -ENLNGQSAFILYTFILGFAIPLVLIFVFYYLVIRKLR 295
E++ + + + F +PL+L+ Y + R
Sbjct: 193 FEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 230
Score = 63.2 bits (153), Expect = 8e-11
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 306 KKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQI 365
K K + + + T + + + K + ++ ++ LCWLP I
Sbjct: 316 KVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINC 375
Query: 366 ALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACTC 419
F P + + +A LS++NS +NP +YA+ F+++F K
Sbjct: 376 FTFFCPDCSH---APLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRS 426
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 112 bits (280), Expect = 9e-27
Identities = 52/319 (16%), Positives = 104/319 (32%), Gaps = 68/319 (21%)
Query: 34 DFLNDTFNGTACPHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYI 93
LN T ++ Y + + + GN LV VL+ +QT TN +
Sbjct: 18 SHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLV 77
Query: 94 VNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYI 153
V+LA+AD L+ L++ +
Sbjct: 78 VSLAVAD--LLVAT---------------------------------LVMPWVVYL---- 98
Query: 154 LVSLFRVASLSSYWPFGDLMCKIYMT---TTSINQFTSSIF-LTIMSADRYVAVCHPITA 209
W F + C +++T T+SI+ L +S DRY AV P+
Sbjct: 99 -------EVTGGVWNFSRICCDVFVTLDVMMC----TASIWNLCAISIDRYTAVVMPVHY 147
Query: 210 PNL---RTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSA 266
+ + ++ W + P++ + + + C+I
Sbjct: 148 QHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFN--TTGDPTVCSI---------SNPD 196
Query: 267 FILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTV 326
F++Y+ ++ F +P + + Y + L+ KN + + K+ T+
Sbjct: 197 FVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTI 256
Query: 327 GPKNKPKEKKKSHRKVTKL 345
G + + + ++L
Sbjct: 257 GIGHLLTKSPSLNAAKSEL 275
Score = 65.2 bits (158), Expect = 2e-11
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 331 KPKEKKKSHRKVTKLVLTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGAL 390
+K T++V V+ +++CWLP+++T + ++ ++ L
Sbjct: 388 DAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT----CHVSPELYSATTWL 443
Query: 391 SYSNSAMNPILYAFLSDNFKKSFLKACTC 419
Y NSA+NP++Y + F+K+FLK +C
Sbjct: 444 GYVNSALNPVIYTTFNIEFRKAFLKILSC 472
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 94.2 bits (233), Expect = 1e-20
Identities = 42/320 (13%), Positives = 97/320 (30%), Gaps = 59/320 (18%)
Query: 26 SNFTDPSLDFLNDTFNGTACPHSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKM 85
S++ + + + + G + T ++++IC +L N V+ + + K
Sbjct: 35 SDYVNYDIIVRHYNYTGKLNISADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKF 94
Query: 86 QTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITM 145
+I NLA++D L G+
Sbjct: 95 HRPMYYFIGNLALSD---------------------------------LLAGV------- 114
Query: 146 SISYWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSSIF-LTIMSADRYVAVC 204
+ + S ++ + + + + ++S+F L ++ +RY+ +
Sbjct: 115 --------AYTANLLLSGATTYKLTPAQWFLREGSMFVA-LSASVFSLLAIAIERYITML 165
Query: 205 HPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQ 264
N F ++ W S I IM + I + ++ S +
Sbjct: 166 KMKL-HNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPL--------Y 216
Query: 265 SAFILYTFILGFAIPLVLIFVFYYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLR 324
+ F + L+ I + Y + +RT + + K+ K T+
Sbjct: 217 HKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIG 276
Query: 325 TVGPKNKPKEKKKSHRKVTK 344
K + ++ K
Sbjct: 277 IGHLLTKSPSLNAAKSELDK 296
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 4e-08
Identities = 58/370 (15%), Positives = 101/370 (27%), Gaps = 151/370 (40%)
Query: 6 LISFLLLFLLDLVRGTLLYNSNFTD--------------PSLDFLNDTFNGTACPHSTGP 51
LI F L +L+R TL FT P D+L + P S P
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL------LSIPIS-CP 239
Query: 52 TLFFATQTI-YLIIC-------------ITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLA 97
L Q Y++ + G G++ + + ++ + + +
Sbjct: 240 -LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF----V 294
Query: 98 IADEC----FLIGI------PFLMITIKM--QTVTN-------MYIVNLAIADECFLIGI 138
+ F IG+ P + + ++ N M L+I +
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM----LSI------SNL 344
Query: 139 PFLMITMSISYW--H-----YILVSL------FRVA----SLSSYWPFGDLMCKIYMTTT 181
+ ++ H + +SL V+ SL + K +
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG---LNLTLRKA-KAPS 400
Query: 182 SINQ----FT------SSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFI------- 224
++Q F+ S+ FL P+ +P + + I
Sbjct: 401 GLDQSRIPFSERKLKFSNRFL-------------PVASP-FHSHLLVPASDLINKDLVKN 446
Query: 225 --AWTASAIFMIPVIMYA----------------SIIDSENTKSCNIMWPETENLNGQSA 266
++ A I IPV Y I+D W T
Sbjct: 447 NVSFNAKDI-QIPV--YDTFDGSDLRVLSGSISERIVDCIIRLPVK--WETTTQFK---- 497
Query: 267 FILYTFILGF 276
T IL F
Sbjct: 498 ---ATHILDF 504
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 1e-04
Identities = 74/540 (13%), Positives = 144/540 (26%), Gaps = 155/540 (28%)
Query: 11 LLFLLDLVRGTLLYNSN----FTDPSL----DFLNDTFNGTACPHSTGPTLFFATQTIYL 62
L L + L F + L FL T + T + Q
Sbjct: 64 TLRLFWTL---LSKQEEMVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMTRMYIEQR--- 116
Query: 63 IICITGLLGNTLVIYV---VLRFSKMQTVTNM--------YIV-------------NLAI 98
L N ++ V R + ++
Sbjct: 117 -----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 99 ADECFLIGIPFLM--ITIKMQTVTNMYIVNLAIADECFLIGIPFLM-------ITMSISY 149
+ F + + +K + L + I + I + I
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 150 WHYILVSLFRVAS-------LSSYW------PFGDLMCKIYMTTTSINQFTSSIFLTIMS 196
L L + L + F +L CKI +TT + +S
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRF-----KQVT-DFLS 282
Query: 197 ADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYA------SIIDSENTKS 250
A + + L TP K + + + +P + SII +E+ +
Sbjct: 283 AATTTHISLDHHSMTL-TPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSII-AESIRD 339
Query: 251 CNIMWPETENLNGQ------SAFI----------LYT----FILGFAIPLVLIFVFYY-- 288
W +++N + + ++ F IP +L+ + ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 289 ------LVIRKLRTVGPKNKPKEKKKS----HRKVTKLVLTVITLRTVGPKNKPKEKKKS 338
+V+ KL K S K + + + I L K K + +
Sbjct: 400 IKSDVMVVVNKLH-----------KYSLVEKQPKESTISIPSIYLEL---KVKLENEYAL 445
Query: 339 HRKVTKLVLTVITVY-VLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAM 397
HR ++ Y + PP Q + I + +
Sbjct: 446 HRS-------IVDHYNIPKTFDSD------DLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 398 NPILYAFLSDNFKKSFLKACTCAAGKDVNATLHLENSVTCLNSVFPRK---RNSERYHTR 454
+++ +F+ FL+ NA+ + N++ L F + N +Y
Sbjct: 493 FRMVFL----DFR--FLEQKIRHDSTAWNASGSILNTLQQLK--FYKPYICDNDPKYERL 544
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 31.2 bits (71), Expect = 0.040
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 187 TSSIF-LTIMSADRYVAVCHPITAPNLRTP 215
TSSI L +S DRY ++ I RTP
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTP 30
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 28.5 bits (63), Expect = 0.41
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 383 VFLIAGALSYSNSAMNPILYAFLSDNFKKSFLKACT 418
VF A L NS +NPI+YA S + + +F
Sbjct: 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFP 37
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB:
3por_A*
Length = 301
Score = 30.2 bits (67), Expect = 1.4
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 470 EIGSRGGQSTTALTSRS--NITMS--TDSGVAMGTKDQFSNGLGTNTNGNS 516
+G +SRS TMS TDSG+ G + +G T +
Sbjct: 9 RMGVMYNGDDWNFSSRSRVLFTMSGTTDSGLEFGASFKAHESVGAETGEDG 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.411
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,420,092
Number of extensions: 418373
Number of successful extensions: 766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 50
Length of query: 522
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 424
Effective length of database: 3,965,535
Effective search space: 1681386840
Effective search space used: 1681386840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.9 bits)