RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15368
         (522 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score =  114 bits (285), Expect = 1e-28
 Identities = 63/373 (16%), Positives = 131/373 (35%), Gaps = 79/373 (21%)

Query: 47  HSTGPTLFFATQTIYLIICITGLLGNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIG 106
           +   P  F        ++ + G   N L +YV ++  K++T  N  ++NLA+AD   + G
Sbjct: 30  YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 89

Query: 107 IPFLMITIKMQTVTNMYIVNLAIADECFLIGIPFLMITMSISYWHYILVSLFRVASLSSY 166
                +   +                                                 Y
Sbjct: 90  GFTTTLYTSLH-----------------------------------------------GY 102

Query: 167 WPFGDLMCKIYMTTTSINQFTSSIFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAW 226
           + FG   C +     ++    +   L +++ +RYV VC P++            V+F   
Sbjct: 103 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWV 162

Query: 227 TASAIFMIPVIMYASIIDSENTKSCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVF 286
            A A    P++ ++  I      SC I +          +F++Y F++ F IPL++IF  
Sbjct: 163 MALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFC 222

Query: 287 YYLVIRKLRTVGPKNKPKEKKKSHRKVTKLVLTVITLRTVGPKNKPKEKKKSHRKVTKLV 346
           Y  ++  ++    +                              +    +K+ ++VT++V
Sbjct: 223 YGQLVFTVKEAAAQQ----------------------------QESATTQKAEKEVTRMV 254

Query: 347 LTVITVYVLCWLPYWITQIALIFTPPRQCQSSITVIVFLIAGALSYSNSAMNPILYAFLS 406
           + ++  +++CWLPY      +         S    I   I    + +++  NP++Y  ++
Sbjct: 255 IIMVIAFLICWLPYAGVAFYIFTHQG----SDFGPIFMTIPAFFAKTSAVYNPVIYIMMN 310

Query: 407 DNFKKSFLKACTC 419
             F+   +    C
Sbjct: 311 KQFRNCMVTTLCC 323


>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 27.5 bits (60), Expect = 4.7
 Identities = 27/222 (12%), Positives = 64/222 (28%), Gaps = 13/222 (5%)

Query: 71  GNTLVIYVVLRFSKMQTVTNMYIVNLAIADECFLIGIPFLMITIKMQTVTNMYIVNLAIA 130
           G  +     +R  +   ++ +    L    E  L G   +   +    V N   +  A A
Sbjct: 256 GAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGA 315

Query: 131 DECFLIGIPFLMITMSIS-YWHYILVSLFRVASLSSYWPFGDLMCKIYMTTTSINQFTSS 189
                I +P +    +   +  ++   L   A L+S       M         +++  + 
Sbjct: 316 FNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV 375

Query: 190 IFLTIMSADRYVAVCHPITAPNLRTPFISKVVSFIAWTASAIFMIPVIMYASIIDSENTK 249
           ++   +         H +   N     +      I      +    +I++  I  ++   
Sbjct: 376 LWTAAIV----FFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTE--LIIFFWIFGADK-- 427

Query: 250 SCNIMWPETENLNGQSAFILYTFILGFAIPLVLIFVFYYLVI 291
                W E           +Y +++ +  P  L  +      
Sbjct: 428 ----AWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAR 465


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,803,008
Number of extensions: 78724
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 7
Length of query: 522
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 433
Effective length of database: 1,185,626
Effective search space: 513376058
Effective search space used: 513376058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)