BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15370
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V1N|A Chain A, Solution Structure Of The Region 51-160 Of Human Kin17
Reveals A Winged Helix Fold
Length = 111
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 78/99 (78%)
Query: 51 QRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNAT 110
QRQLLL ++N Q++D FS EF +LELLRR+F T+RV N VY +YI+ REH+HMNAT
Sbjct: 2 QRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNAT 61
Query: 111 QWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETI 149
QWETLT+F K LG+ G C VDET KGW++ YIDRDPETI
Sbjct: 62 QWETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETI 100
>pdb|2CKK|A Chain A, High Resolution Crystal Structure Of The Human Kin17 C-
Terminal Domain Containing A Kow Motif Kin17
Length = 127
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 81/124 (65%)
Query: 270 DQERQNSGEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLD 329
+++++ + + WL IIVKI+TK LGEK++KKK V++VIDKY A+V ++DS K+KLD
Sbjct: 3 EEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLKLD 62
Query: 330 QEHLETVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSH 389
Q HLETVIP G+++L+L G Y+G + L+ IN +A + + + V I Y
Sbjct: 63 QTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYED 122
Query: 390 ICKI 393
I K+
Sbjct: 123 ISKL 126
>pdb|1YHU|A Chain A, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits.
pdb|1YHU|E Chain E, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits.
pdb|1YHU|I Chain I, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits.
pdb|1YHU|M Chain M, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits.
pdb|1YHU|Q Chain Q, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits.
pdb|1YHU|U Chain U, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits
Length = 145
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 254 LEQIKLEEEEAKKKRIDQERQNSGEESWLH--------KNIIVKIVTKNLGEKFYKKKGT 305
LE+ K+++E AK I R G+ W + ++I + +K++ +K
Sbjct: 5 LERAKVKDEWAKAYGIGAARSKFGDALWRNVFNYAPNARDIFESVNSKDMASPEFKAH-- 62
Query: 306 VEKVIDKYAAIVSLLDSKHKIKLDQEHLET 335
+ +V+ ++S+LD++ + D HL++
Sbjct: 63 IARVLGGLDRVISMLDNQATLDADLAHLKS 92
>pdb|2IWC|A Chain A, Benzylpenicilloyl-Acylated Mecr1 Extracellular Antibiotic-
Sensor Domain
Length = 255
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 120 KHLGKSGKCVVDETE-KGWFVTYIDRDPETIAF 151
K++GK+G +V+ E GWFV Y++ T F
Sbjct: 194 KYVGKTGTGIVNHKEANGWFVGYVETKDNTYYF 226
>pdb|2IWB|A Chain A, Mecr1 Unbound Extracellular Antibiotic-Sensor Domain
Length = 246
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 120 KHLGKSGKCVVDETE-KGWFVTYIDRDPETIAF 151
K++GK+G +V+ E GWFV Y++ T F
Sbjct: 185 KYVGKTGTGIVNHKEANGWFVGYVETKDNTYYF 217
>pdb|2IWD|A Chain A, Oxacilloyl-Acylated Mecr1 Extracellular Antibiotic-Sensor
Domain
Length = 246
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 120 KHLGKSGKCVVDETE-KGWFVTYIDRDPETIAF 151
K++GK+G +V+ E GWFV Y++ T F
Sbjct: 185 KYVGKTGTGIVNHKEANGWFVGYVETKDNTYYF 217
>pdb|3V08|A Chain A, Crystal Structure Of Equine Serum Albumin
pdb|4F5T|A Chain A, Crystal Structure Of Equine Serum Albumin
pdb|4F5U|A Chain A, Crystal Structure Of Equine Serum Albumin At 2.04
Resolution
Length = 583
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 307 EKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGK 350
EK I K +A+ L+ KHK K +E L+TV+ N V CG+
Sbjct: 519 EKQIKKQSALAELV--KHKPKATKEQLKTVLGNFSAFVAKCCGR 560
>pdb|3FHF|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
8-Oxoguanine Dna Glycosylase (Mjogg)
Length = 214
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 293 KNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYK 352
KNLG +FY+K+ + ++ I +++S K+ +E L I +G YK
Sbjct: 86 KNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIG---------YK 136
Query: 353 GEKAVLKDINIDDCNANVELIDPH 376
L+++ DD V +ID H
Sbjct: 137 EASHFLRNVGYDD----VAIIDRH 156
>pdb|3KNT|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii 8-
Oxoguanine GlycosylaseLYASE IN COMPLEX WITH 15MER DNA
Containing 8-Oxoguanine
pdb|3KNT|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii 8-
Oxoguanine GlycosylaseLYASE IN COMPLEX WITH 15MER DNA
Containing 8-Oxoguanine
pdb|3KNT|C Chain C, Crystal Structure Of Methanocaldococcus Jannaschii 8-
Oxoguanine GlycosylaseLYASE IN COMPLEX WITH 15MER DNA
Containing 8-Oxoguanine
pdb|3KNT|D Chain D, Crystal Structure Of Methanocaldococcus Jannaschii 8-
Oxoguanine GlycosylaseLYASE IN COMPLEX WITH 15MER DNA
Containing 8-Oxoguanine
Length = 207
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 293 KNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYK 352
KNLG +FY+K+ + ++ I +++S K+ +E L I +G Y+
Sbjct: 79 KNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIG---------YQ 129
Query: 353 GEKAVLKDINIDDCNANVELIDPH 376
L+++ DD V +ID H
Sbjct: 130 EASHFLRNVGYDD----VAIIDRH 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,462,060
Number of Sequences: 62578
Number of extensions: 404835
Number of successful extensions: 1203
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 13
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)