RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15370
         (393 letters)



>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 30.1 bits (68), Expect = 0.068
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 25 RWYCQMCQKQCRDENGFKCHTSSEAHQRQL 54
             C  C +   D    K H  S+ H+++L
Sbjct: 15 LHRCLACARYFIDSTNLKTHFRSKDHKKRL 44


>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 96

 Score = 27.7 bits (62), Expect = 0.84
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 341 GRQVLILCGKYKGEKAVLKDINIDDCNANVELID-PHYDNKVVRN-IDYSHI 390
           GR  + + G+  G K V+ DI IDD   N  L+  P     V R  ++  H+
Sbjct: 7   GRICVKVKGREAGSKCVIVDI-IDD---NFVLVTGPKDITGVKRRRVNILHL 54


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 28.6 bits (63), Expect = 1.5
 Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 249 RKLTALEQIKLEEE-EAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGEKFYKKKG 304
             LT     KL ++ + K+  ++   + S ++ W       ++  +   ++  + +G
Sbjct: 704 WSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEARG 760


>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 25.9 bits (57), Expect = 1.9
 Identities = 5/17 (29%), Positives = 11/17 (64%)

Query: 27 YCQMCQKQCRDENGFKC 43
          +C  CQ + +D++ + C
Sbjct: 17 FCYGCQGELKDQHVYVC 33


>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 94

 Score = 24.8 bits (54), Expect = 6.9
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 318 SLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDINIDD 365
           S+   K  I      L+  +P+     LI CG+   +   L    I  
Sbjct: 39  SISFLKQLI---AGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 83


>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of
           carbazole CarAa {Janthinobacterium sp. j3 [TaxId:
           213804]}
          Length = 242

 Score = 25.9 bits (57), Expect = 9.1
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 66  DEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADR 102
            ++ +EFE  +  +    F+   ++A +   D+ AD 
Sbjct: 169 KKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADD 205


>d2cu9a1 b.1.22.1 (A:1-161) Anti-silencing protein 1, ASF1
           {Schizosaccharomyces pombe [TaxId: 4896]}
          Length = 161

 Score = 25.5 bits (56), Expect = 9.5
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 15/63 (23%)

Query: 337 IPN----LGRQVLILCGKYKGEKAV----------LKDINIDDCNANVELIDPHYDNKVV 382
           +P     LG  V++L   Y+  + V                +  +A ++ +      KV 
Sbjct: 84  LPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEGLNLQEMDDAEIKKVKVDIS-KVW 142

Query: 383 RNI 385
           R+I
Sbjct: 143 RSI 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,436,682
Number of extensions: 68659
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 28
Length of query: 393
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,213,086
Effective search space: 371204316
Effective search space used: 371204316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.9 bits)