BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15371
(393 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K339|KIN17_MOUSE DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1
Length = 391
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/403 (48%), Positives = 265/403 (65%), Gaps = 23/403 (5%)
Query: 1 MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADN 60
MGK + +PK IAN++K+KGLQKLRWYCQMCQKQCRDENGFKCH SE+HQRQLLL ++N
Sbjct: 1 MGKSDFLSPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASEN 60
Query: 61 ADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVK 120
Q++D FS EF +LELLRR+F T+RV N VY +YI+ REH+HMNATQWETLT+F K
Sbjct: 61 PQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTK 120
Query: 121 HLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKEKMEQDDNERNMEFLERQIALG 180
LG+ G C VDET KGW++ YIDRDPETI Q ++ KK+K + DD E+ +F+E Q+ G
Sbjct: 121 WLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRG 180
Query: 181 KEKAAQNAQQQDPVSNELIR-NEDEKLSLKLETFKKPSSSSISLKKVNLDKDV------S 233
E +Q+ PV EL R NE+EK++ L S+ + + K +L +
Sbjct: 181 LE----GKEQETPVFTELSRENEEEKVTFNLNKGAGGSAGATTSKSSSLGPSALKLLGSA 236
Query: 234 ESGPSSSSKKFSGE--KRKLTALEQI-KLEEEEAKKKRIDQERQNSGEESWLHKNIIVKI 290
SG S + S + K+K +AL++I +LEEE+ + R D +WL I+VKI
Sbjct: 237 ASGKRKESSQSSAQPAKKKKSALDEIMELEEEKKRTARTD---------AWLQPGIVVKI 287
Query: 291 VTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGK 350
+TK LGEK++KKKG V++VID+Y A+V + DS ++KLDQ HLETVIP G++VL+L G
Sbjct: 288 ITKKLGEKYHKKKGVVKEVIDRYTAVVKMTDSGDRLKLDQTHLETVIPAPGKRVLVLNGG 347
Query: 351 YKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI 393
Y+G + L+ IN +A + + + V I Y I K+
Sbjct: 348 YRGNEGTLESINEKAFSATIVIETGPLKGRRVEGIQYEDISKL 390
>sp|O60870|KIN17_HUMAN DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2
Length = 393
Score = 350 bits (899), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 188/396 (47%), Positives = 260/396 (65%), Gaps = 7/396 (1%)
Query: 1 MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADN 60
MGK + TPK IAN++K+KGLQKLRWYCQMCQKQCRDENGFKCH SE+HQRQLLL ++N
Sbjct: 1 MGKSDFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASEN 60
Query: 61 ADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVK 120
Q++D FS EF +LELLRR+F T+RV N VY +YI+ REH+HMNATQWETLT+F K
Sbjct: 61 PQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTK 120
Query: 121 HLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKEKMEQDDNERNMEFLERQIALG 180
LG+ G C VDET KGW++ YIDRDPETI Q ++ KK+K + DD E+ +F+E Q+ G
Sbjct: 121 WLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRG 180
Query: 181 KEKAAQNAQQQDPVSNELIR-NEDEKLSLKLETFKKPSSSSISLKKVNLDKDVSESGPSS 239
E +Q+ P EL R N++EK++ L SS + S K L ++ SS
Sbjct: 181 LE----GKEQEVPTFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSS 236
Query: 240 SS--KKFSGEKRKLTALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGE 297
+S +K S + + ++ K + + +++++ + + WL IIVKI+TK LGE
Sbjct: 237 ASVKRKESSQSSTQSKEKKKKKSALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGE 296
Query: 298 KFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAV 357
K++KKK V++VIDKY A+V ++DS K+KLDQ HLETVIP G+++L+L G Y+G +
Sbjct: 297 KYHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGT 356
Query: 358 LKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI 393
L+ IN +A + + + V I Y I K+
Sbjct: 357 LESINEKTFSATIVIETGPLKGRRVEGIQYEDISKL 392
>sp|Q9Y7X9|KIN17_SCHPO KIN17-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPBC365.09c PE=3 SV=1
Length = 304
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/197 (47%), Positives = 130/197 (65%)
Query: 1 MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADN 60
MG+ E GTPK I+N +K+KGLQ+LRWYC CQKQ RDENGFKCHT SE H RQ+ + A N
Sbjct: 1 MGRAEAGTPKAISNALKSKGLQRLRWYCSACQKQMRDENGFKCHTQSEGHIRQMNVIAMN 60
Query: 61 ADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVK 120
+ + +FS +F ++ LLR +++ N+ YQ+YI D+ HVHMNAT+W TL+EF K
Sbjct: 61 PGKRIQDFSNQFLRDFISLLRTAHGEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCK 120
Query: 121 HLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKEKMEQDDNERNMEFLERQIALG 180
LG+ G C V+E EKG+F++YID++P I + K+E+ E+ D E+ + L+ QI
Sbjct: 121 FLGRQGMCRVEENEKGFFISYIDKNPANILRNEANKKRERQEKSDEEQRLRLLDEQIKRA 180
Query: 181 KEKAAQNAQQQDPVSNE 197
E A N +D S E
Sbjct: 181 YESAQNNEDNKDGSSRE 197
>sp|P40962|RTS2_YEAST Zinc finger protein RTS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RTS2 PE=1 SV=1
Length = 232
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 91/125 (72%), Gaps = 5/125 (4%)
Query: 8 TPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLL-LFADNADQYLD 66
+ KY + + +GLQK R+YCQ+CQ+QC+D NGF+ H S +H R++ + A++A +Y
Sbjct: 6 SAKYWSKQGARRGLQKTRYYCQICQRQCKDANGFQSHNKSPSHLRKISQVTAEDARRY-- 63
Query: 67 EFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSG 126
+ +FE+G+L+LL+++ + + ANKVY +Y+ DR+HVHMNAT +LT+FV++LG++G
Sbjct: 64 --NIQFEKGFLQLLKQRHGEKWIDANKVYNEYVQDRDHVHMNATMHRSLTQFVRYLGRAG 121
Query: 127 KCVVD 131
K VD
Sbjct: 122 KVDVD 126
>sp|Q55D16|KIN17_DICDI KIN17-like protein OS=Dictyostelium discoideum GN=DDB_G0269816 PE=3
SV=1
Length = 445
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 4/95 (4%)
Query: 298 KFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAV 357
K++K+KG + V +++ A V LLDS +K+DQ LETVIP +G V+I+ GKY+G++A
Sbjct: 353 KYFKQKGYIVSVENEFLAKVKLLDSGDILKIDQTFLETVIPQIGSTVIIVNGKYRGKEAT 412
Query: 358 LKDINIDDCNANVELIDPHYDNKVVRNIDYSHICK 392
+K++N DD NA + + DN + + Y K
Sbjct: 413 IKNVNFDDFNAKLYI----KDNDITITLPYESFSK 443
>sp|Q9C801|MOS2_ARATH Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1
Length = 462
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 242 KKFSGEKRKLTALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTKNL-GEKFY 300
KK SG R A + E ++K+ Q R+ + SWL +I V+IV+K+ G + Y
Sbjct: 306 KKTSGRGR--GAERGSRSEVRASEKQDRGQTRERKVKPSWLRSHIKVRIVSKDWKGGRLY 363
Query: 301 KKKGTVEKVIDKYAAIVSLLDSKHKIK-LDQEHLETVIPNLGRQVLILCGKYKGEKAVLK 359
KKG V V+ +++ +++ ++ +DQE LET +P G VL+L GK+KG L
Sbjct: 364 LKKGKVVDVVGPTTCDITMDETQELVQGVDQELLETALPRRGGPVLVLSGKHKGVYGNLV 423
Query: 360 DINIDDCNANVELIDPH 376
+ ++D V +D H
Sbjct: 424 EKDLDKETGVVRDLDNH 440
>sp|Q90X38|GPKOW_DANRE G patch domain and KOW motifs-containing protein OS=Danio rerio
GN=gpkow PE=2 SV=2
Length = 506
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 271 QERQNSGEESWLHKNIIVKIVTKNL-GEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLD 329
+ R + SWL +++ V+ + K G K+Y K VE V+ + + + + +
Sbjct: 379 ESRSSPPAPSWLQRDLRVRFIDKAFKGGKYYNSKMRVEDVLTPHTCVCRTEEGRMLDDIR 438
Query: 330 QEHLETVIP-NLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYS 388
Q+ LET++P N ++++ G+++G+ + + + C A V+L Y+ +V +DY
Sbjct: 439 QKMLETIVPKNDSDYIMVVLGEHRGQVGRILKRDREKCRAMVQLD--RYEERVF-TLDYD 495
Query: 389 HIC 391
IC
Sbjct: 496 TIC 498
>sp|Q56A08|GPKOW_MOUSE G patch domain and KOW motifs-containing protein OS=Mus musculus
GN=Gpkow PE=2 SV=2
Length = 488
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 281 WLHKNIIVKIVTK-NLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIP- 338
WLH+++ V+ + K + ++Y K T+E V+ + + + + ++ LET+IP
Sbjct: 369 WLHRDLRVRFIDKLHKSGRYYNTKMTIEDVLSPDTCVCRTDEGRVLEDVREDMLETLIPK 428
Query: 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICK 392
G +V+++ G + G+ +L+ + +A V+L +N+VV + Y+ IC+
Sbjct: 429 GEGHRVMVVLGPHAGKVGLLRSRDRAQSHALVQL---RRENQVV-ELHYNAICQ 478
>sp|O55201|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1
SV=1
Length = 1082
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 274 QNSGEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHL 333
QNS + W+ +I VK+ L + + G + V + V L DS+ + + EHL
Sbjct: 968 QNSSD--WVTTDIQVKVRDTYLDTQIVGQTGVIRSVTGGMCS-VYLKDSEKVVSISSEHL 1024
Query: 334 ETVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELID 374
E + P +V ++ G+ + VL I+ +D ++L D
Sbjct: 1025 EPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLED 1065
>sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1
SV=1
Length = 1087
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 274 QNSGEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHL 333
QNS + W+ +I VK+ L + + G + V + V L DS+ + + EHL
Sbjct: 974 QNSSD--WVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCS-VYLKDSEKVVSISSEHL 1030
Query: 334 ETVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVEL 372
E + P +V ++ G+ + VL I+ +D ++L
Sbjct: 1031 EPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDL 1069
>sp|Q5R405|SPT5H_PONAB Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2
SV=1
Length = 1083
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 274 QNSGEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHL 333
QNS + W+ +I VK+ L + + G + V + V L DS+ + + EHL
Sbjct: 970 QNSSD--WVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCS-VYLKDSEKVVSISSEHL 1026
Query: 334 ETVIPNLGRQVLILCGKYKGEKAVLKDINIDD 365
E + P +V ++ G+ + VL I+ +D
Sbjct: 1027 EPITPTKNNKVKVILGEDREATGVLLSIDGED 1058
>sp|P11047|LAMC1_HUMAN Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3
Length = 1609
Score = 34.7 bits (78), Expect = 1.3, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 89/203 (43%), Gaps = 38/203 (18%)
Query: 148 TIAFQQKMAKKEKMEQDDNERNMEFLERQIALGKEKAAQNAQQQ-----DPVSNELIRNE 202
TI +A++ + ++ ER +E R++ K AA + Q DP + L+ E
Sbjct: 1123 TIEETGNLAEQARAHVENTERLIEIASRELEKAKVAAANVSVTQPESTGDPNNMTLLAEE 1182
Query: 203 DEKLSLKLETFKKPSSSSISLKKVNLDKDVSESGPSSSSKKFSGEKRKLTALEQIKLEEE 262
KL+ E K+ + + + K D S + + +GE + +E++ + E
Sbjct: 1183 ARKLA---ERHKQEADDIVRVAKTA--NDTSTEAYNLLLRTLAGENQTAFEIEELNRKYE 1237
Query: 263 EAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSL--L 320
+AK D E+Q + +H+ K+ G +K ++ YA++ L L
Sbjct: 1238 QAKNISQDLEKQ----AARVHEEA--------------KRAG--DKAVEIYASVAQLSPL 1277
Query: 321 DSK------HKIKLDQEHLETVI 337
DS+ + IK++ E+LE +I
Sbjct: 1278 DSETLENEANNIKMEAENLEQLI 1300
>sp|P75538|Y233_MYCPN Uncharacterized lipoprotein MG095 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_233 PE=4 SV=1
Length = 454
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 34/162 (20%)
Query: 110 TQWETLTEFVKHLGKSGKCV-----VDETEKGWFVTYIDRDPETIAFQQKMAKKEKMEQD 164
T W T+T +K +GKS + +DETE Q+ + D
Sbjct: 135 TYWNTVTPSLKAIGKSSNLITFSQDIDETE-----------------LQRALANNLIVAD 177
Query: 165 DNERNMEFLERQIALGKEKAAQNAQQQDPVSNELIRNEDEKLSLKLE-----TFKKPSSS 219
D N F + ++ K NAQ Q + + + ++LK + T K ++
Sbjct: 178 DGNNNFWFGLKSLSFNSAKLTDNAQTQ------MAQKTTQAVTLKSQAQMSSTNTKNTNK 231
Query: 220 SISLK-KVNLDKDVSESGPSSSSKKFSGEKRKLTALEQIKLE 260
I L+ K+ L ++ G + SG +KL ++E I+ E
Sbjct: 232 KIDLRDKITLSSTMNTQGSGDNKNPSSGLIQKLVSVENIEAE 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,273,917
Number of Sequences: 539616
Number of extensions: 6265984
Number of successful extensions: 27613
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 838
Number of HSP's that attempted gapping in prelim test: 25612
Number of HSP's gapped (non-prelim): 2225
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)