Query psy15371
Match_columns 393
No_of_seqs 223 out of 348
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:10:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1n_A KIN17, protein KIN homo 100.0 5.2E-60 1.8E-64 401.5 5.1 110 51-160 2-111 (111)
2 2ckk_A KIN17; beta barrel, rib 100.0 2E-38 6.9E-43 275.7 14.5 118 276-393 9-126 (127)
3 1nz9_A Transcription antitermi 96.9 0.0021 7.3E-08 47.7 6.7 53 337-392 4-57 (58)
4 2e6z_A Transcription elongatio 96.6 0.0036 1.2E-07 47.2 5.4 54 336-393 6-59 (59)
5 3p8b_B Transcription antitermi 95.7 0.017 5.9E-07 50.3 6.2 52 337-392 91-144 (152)
6 3cw1_L U1 small nuclear ribonu 95.4 0.012 4E-07 47.2 3.9 61 25-92 3-65 (77)
7 1vq8_T 50S ribosomal protein L 95.2 0.017 5.8E-07 49.8 4.5 33 339-371 44-76 (120)
8 3u5e_Y L33, YL33, 60S ribosoma 95.2 0.016 5.3E-07 50.5 4.2 33 339-371 51-83 (127)
9 3j21_U 50S ribosomal protein L 95.1 0.019 6.4E-07 49.5 4.4 33 339-371 47-79 (121)
10 2ftc_N Mitochondrial ribosomal 94.8 0.034 1.2E-06 46.1 5.1 31 341-371 1-31 (96)
11 2jvv_A Transcription antitermi 94.7 0.039 1.3E-06 49.2 5.5 51 339-392 129-180 (181)
12 2e70_A Transcription elongatio 94.6 0.059 2E-06 42.5 5.7 48 338-391 18-65 (71)
13 4a17_S RPL26, 60S ribosomal pr 94.6 0.03 1E-06 49.1 4.5 32 339-370 50-81 (135)
14 2zkr_t 60S ribosomal protein L 94.6 0.032 1.1E-06 49.4 4.7 35 337-371 47-83 (145)
15 3iz5_Y 60S ribosomal protein L 94.6 0.029 9.9E-07 50.0 4.4 32 339-370 50-81 (150)
16 3v2d_Y 50S ribosomal protein L 94.4 0.039 1.3E-06 46.8 4.5 35 337-371 5-40 (110)
17 2zjr_R 50S ribosomal protein L 94.2 0.032 1.1E-06 47.6 3.7 34 338-371 15-49 (115)
18 2jz2_A SSL0352 protein; SH3-li 93.5 0.25 8.7E-06 38.2 7.2 56 282-339 2-58 (66)
19 3r8s_U 50S ribosomal protein L 93.4 0.082 2.8E-06 44.2 4.7 32 339-371 5-36 (102)
20 2do3_A Transcription elongatio 92.6 0.23 7.9E-06 38.9 5.9 43 322-365 3-45 (69)
21 3kbg_A 30S ribosomal protein S 92.4 0.61 2.1E-05 43.7 9.5 74 288-367 88-168 (213)
22 1zr9_A Zinc finger protein 593 92.3 0.04 1.4E-06 47.6 1.3 37 25-61 50-86 (124)
23 2xhc_A Transcription antitermi 90.5 0.38 1.3E-05 47.8 6.3 52 339-393 300-352 (352)
24 2xzm_W 40S ribosomal protein S 89.6 1.3 4.3E-05 42.7 8.9 43 322-364 158-203 (260)
25 3fdr_A Tudor and KH domain-con 89.5 2.3 7.9E-05 33.7 9.1 76 252-338 5-81 (94)
26 3j20_E 30S ribosomal protein S 88.6 0.67 2.3E-05 44.2 6.2 66 299-364 131-205 (243)
27 3bbo_W Ribosomal protein L24; 88.3 0.059 2E-06 49.7 -1.2 33 339-371 70-102 (191)
28 3iz6_D 40S ribosomal protein S 87.6 0.93 3.2E-05 43.7 6.5 42 322-363 156-200 (265)
29 1zu1_A DSRBP-ZFA, RNA binding 86.8 0.17 5.7E-06 43.0 0.7 38 20-57 88-125 (127)
30 2qqr_A JMJC domain-containing 86.3 6.4 0.00022 33.6 10.4 93 290-391 12-111 (118)
31 1zu1_A DSRBP-ZFA, RNA binding 85.8 0.35 1.2E-05 41.0 2.3 35 23-57 30-64 (127)
32 1m1h_A Transcription antitermi 85.8 0.15 5.2E-06 48.4 0.0 55 335-392 192-247 (248)
33 3u5c_E RP5, S7, YS6, 40S ribos 85.3 1 3.4E-05 43.4 5.4 64 299-363 130-200 (261)
34 2diq_A Tudor and KH domain-con 80.6 6 0.00021 32.2 7.7 76 252-338 10-86 (110)
35 3izc_N 60S ribosomal protein R 79.9 1.5 5.3E-05 38.4 4.0 38 338-379 15-52 (138)
36 1ssf_A Transformation related 78.4 21 0.00071 31.9 10.9 81 290-372 15-98 (156)
37 1qp2_A Protein (PSAE protein); 77.9 7 0.00024 30.7 6.7 59 282-342 2-67 (70)
38 1qp2_A Protein (PSAE protein); 71.1 10 0.00034 29.8 6.1 52 339-390 3-58 (70)
39 2xdp_A Lysine-specific demethy 69.3 6.1 0.00021 34.0 5.0 89 291-391 14-112 (123)
40 3h8z_A FragIle X mental retard 68.9 32 0.0011 29.5 9.5 83 284-373 4-99 (128)
41 4f9c_B Protein DBF4 homolog A; 68.2 0.23 7.8E-06 43.7 -4.3 48 25-79 87-135 (144)
42 4a4f_A SurviVal of motor neuro 66.0 22 0.00075 26.4 7.0 53 336-392 7-60 (64)
43 3pnw_C Tudor domain-containing 63.9 21 0.00073 27.7 6.8 51 338-392 18-69 (77)
44 3p8d_A Medulloblastoma antigen 60.9 21 0.00071 27.6 6.1 42 295-339 17-59 (67)
45 1mhn_A SurviVal motor neuron p 60.8 19 0.00066 26.2 5.7 41 296-338 16-58 (59)
46 2equ_A PHD finger protein 20-l 59.8 17 0.00057 28.4 5.5 40 297-339 22-62 (74)
47 2gqc_A Rhomboid intramembrane 59.5 7.2 0.00025 29.8 3.3 31 115-145 15-46 (70)
48 2oqk_A Putative translation in 59.0 20 0.00068 30.1 6.2 61 303-364 35-97 (117)
49 2wac_A CG7008-PA; unknown func 57.9 58 0.002 28.5 9.5 74 253-338 28-104 (218)
50 4b9w_A TDRD1, tudor domain-con 56.8 56 0.0019 28.9 9.2 75 253-338 44-119 (201)
51 2g3r_A Tumor suppressor P53-bi 56.6 96 0.0033 26.7 10.8 80 290-372 11-94 (123)
52 1g5v_A SurviVal motor neuron p 55.5 40 0.0014 27.0 7.2 51 337-391 10-61 (88)
53 2equ_A PHD finger protein 20-l 55.1 32 0.0011 26.7 6.4 50 336-391 8-57 (74)
54 3j21_5 50S ribosomal protein L 55.0 13 0.00045 29.6 4.2 29 338-366 4-32 (83)
55 3qii_A PHD finger protein 20; 54.3 28 0.00097 28.1 6.1 55 279-340 20-75 (85)
56 2d9t_A Tudor domain-containing 52.5 36 0.0012 26.3 6.3 42 296-339 22-65 (78)
57 2lvr_A Zinc finger and BTB dom 57.7 2.9 0.0001 24.0 0.0 22 26-47 4-25 (30)
58 1g5v_A SurviVal motor neuron p 52.2 29 0.00098 27.9 5.8 56 279-339 9-66 (88)
59 4a18_N RPL27, ribosomal protei 51.9 15 0.0005 32.5 4.3 26 339-364 6-31 (144)
60 3iz5_N 60S ribosomal protein L 51.7 10 0.00034 33.1 3.2 36 338-377 7-42 (134)
61 2lvu_A Zinc finger and BTB dom 56.9 3.1 0.00011 23.5 0.0 22 26-47 3-24 (26)
62 1ah9_A IF1, initiation factor 51.1 46 0.0016 25.1 6.6 56 303-359 9-67 (71)
63 2d9t_A Tudor domain-containing 50.8 44 0.0015 25.8 6.5 52 337-392 9-61 (78)
64 2lvt_A Zinc finger and BTB dom 55.8 3.4 0.00011 23.9 0.0 22 26-47 3-24 (29)
65 4a4f_A SurviVal of motor neuro 50.1 37 0.0013 25.1 5.8 50 283-336 10-61 (64)
66 2e70_A Transcription elongatio 50.0 44 0.0015 26.1 6.3 45 284-333 20-64 (71)
67 1jb0_E Photosystem 1 reaction 46.9 53 0.0018 25.9 6.3 39 339-377 2-45 (75)
68 4b9x_A TDRD1, tudor domain-con 46.4 73 0.0025 28.8 8.3 75 253-338 44-119 (226)
69 3s6w_A Tudor domain-containing 46.4 34 0.0012 24.3 4.9 39 296-336 14-54 (54)
70 4hcz_A PHD finger protein 1; p 46.1 69 0.0024 24.2 6.6 49 339-392 5-53 (58)
71 3i4o_A Translation initiation 46.0 43 0.0015 26.5 5.8 58 302-360 16-76 (79)
72 2hqx_A P100 CO-activator tudor 45.7 1E+02 0.0034 27.8 9.2 77 252-338 41-118 (246)
73 1s1g_A Potassium voltage-gated 44.9 2.3 7.9E-05 36.1 -1.8 38 110-149 26-64 (124)
74 1mhn_A SurviVal motor neuron p 44.2 87 0.003 22.6 7.1 51 338-392 4-55 (59)
75 4a18_F RPL14; ribosome, eukary 42.4 20 0.0007 30.9 3.7 35 339-377 8-42 (126)
76 2joy_A 50S ribosomal protein L 42.0 19 0.00067 29.2 3.4 29 338-366 4-32 (96)
77 2ldm_A Uncharacterized protein 47.3 5.6 0.00019 31.9 0.0 37 297-336 19-56 (81)
78 2joy_A 50S ribosomal protein L 40.8 42 0.0014 27.2 5.2 50 281-334 3-55 (96)
79 2ckk_A KIN17; beta barrel, rib 40.6 45 0.0016 28.3 5.6 46 339-390 16-66 (127)
80 3p8d_A Medulloblastoma antigen 39.8 82 0.0028 24.2 6.4 47 339-391 8-54 (67)
81 3qr8_A GPV, baseplate assembly 39.7 1.7E+02 0.006 26.1 9.8 57 303-360 20-83 (211)
82 1zvf_A 3-hydroxyanthranilate 3 39.2 8.4 0.00029 35.0 0.8 25 19-44 118-142 (176)
83 3fdr_A Tudor and KH domain-con 38.2 78 0.0027 24.6 6.3 52 336-392 26-78 (94)
84 3s6w_A Tudor domain-containing 38.1 1E+02 0.0034 21.7 6.4 50 339-392 3-53 (54)
85 2m0d_A Zinc finger and BTB dom 37.8 4.7 0.00016 22.9 -0.7 21 26-46 4-24 (30)
86 1rik_A E6APC1 peptide; E6-bind 37.3 4.6 0.00016 23.0 -0.8 22 26-47 3-24 (29)
87 1yfu_A 3-hydroxyanthranilate-3 37.1 9.1 0.00031 34.7 0.7 25 19-44 116-140 (174)
88 2eqj_A Metal-response element- 35.7 1.1E+02 0.0037 23.7 6.4 49 338-391 14-62 (66)
89 1znf_A 31ST zinc finger from X 35.5 4.1 0.00014 22.9 -1.3 21 26-46 2-22 (27)
90 2do3_A Transcription elongatio 35.2 1.2E+02 0.004 23.6 6.7 50 280-334 16-65 (69)
91 2kvg_A Zinc finger and BTB dom 35.1 5.8 0.0002 22.8 -0.7 21 26-46 4-24 (27)
92 2eqk_A Tudor domain-containing 34.6 50 0.0017 26.6 4.6 57 278-338 19-75 (85)
93 3pnw_C Tudor domain-containing 34.4 76 0.0026 24.5 5.6 41 296-338 30-72 (77)
94 3izc_N 60S ribosomal protein R 34.0 61 0.0021 28.3 5.4 33 281-317 14-46 (138)
95 2m0e_A Zinc finger and BTB dom 34.0 7.4 0.00025 21.8 -0.3 20 26-45 3-22 (29)
96 1ard_A Yeast transcription fac 33.2 5.9 0.0002 22.5 -0.8 20 26-45 3-22 (29)
97 2kvf_A Zinc finger and BTB dom 32.7 6.1 0.00021 22.4 -0.8 21 26-46 4-24 (28)
98 1d7q_A Translation initiation 32.7 1.4E+02 0.0049 26.0 7.6 58 304-362 35-94 (143)
99 3iuf_A Zinc finger protein UBI 32.3 5.9 0.0002 26.6 -1.1 22 25-46 7-28 (48)
100 2m0f_A Zinc finger and BTB dom 31.8 6.8 0.00023 22.1 -0.7 20 26-45 3-22 (29)
101 2elv_A Zinc finger protein 406 31.6 6.5 0.00022 23.9 -0.9 23 25-47 9-31 (36)
102 3gox_A Restriction endonucleas 31.4 87 0.003 29.0 6.2 48 290-338 19-66 (200)
103 1fre_A Nuclear factor XNF7; zi 30.6 17 0.00058 24.2 1.1 25 22-46 11-39 (42)
104 2wsc_E PSAE, PSI-E A, photosys 30.2 8.9 0.0003 33.4 -0.5 57 334-390 77-138 (143)
105 3dcl_A TM1086; SAD, structural 30.0 32 0.0011 33.3 3.2 37 338-374 84-120 (284)
106 1p7a_A BF3, BKLF, kruppel-like 29.8 7.5 0.00026 23.7 -0.8 21 25-45 11-31 (37)
107 1srk_A Zinc finger protein ZFP 29.4 7.6 0.00026 23.4 -0.9 22 25-46 7-28 (35)
108 2kvh_A Zinc finger and BTB dom 29.4 7.5 0.00026 22.0 -0.8 20 26-45 4-23 (27)
109 2m0o_A PHD finger protein 1; t 29.2 65 0.0022 25.7 4.3 41 277-324 24-66 (79)
110 1paa_A Yeast transcription fac 28.5 11 0.00036 21.6 -0.3 19 26-44 3-21 (30)
111 3gas_A Heme oxygenase; FMN-bin 28.5 19 0.00066 33.9 1.4 20 106-125 8-27 (259)
112 2dgy_A MGC11102 protein; EIF-1 28.4 2.3E+02 0.0079 23.5 7.9 59 303-361 18-78 (111)
113 2l02_A Uncharacterized protein 28.0 35 0.0012 27.4 2.6 25 117-141 41-65 (82)
114 2yvr_A Transcription intermedi 27.9 18 0.00062 25.0 0.8 12 22-33 15-26 (50)
115 1ib8_A Conserved protein SP14. 27.9 78 0.0027 27.8 5.2 73 312-392 79-155 (164)
116 2k5h_A Conserved protein; stru 27.8 2.4E+02 0.0082 22.7 7.8 56 299-362 40-96 (101)
117 2j49_A Transcription initiatio 27.7 24 0.00082 30.7 1.8 66 60-125 54-122 (148)
118 3s9x_A ASCH domain; MCSG, PSI- 27.3 58 0.002 29.0 4.2 36 336-391 72-107 (159)
119 2z1c_A Hydrogenase expression/ 27.1 1.2E+02 0.004 23.7 5.5 41 304-349 7-47 (75)
120 1klr_A Zinc finger Y-chromosom 27.0 9.5 0.00032 21.5 -0.7 20 26-45 3-22 (30)
121 3iz5_N 60S ribosomal protein L 26.8 1.4E+02 0.0046 25.9 6.4 33 281-317 6-38 (134)
122 2kfq_A FP1; protein, de novo p 26.6 8.7 0.0003 23.1 -0.9 22 26-47 3-24 (32)
123 2qnk_A 3-hydroxyanthranilate 3 26.5 17 0.00057 35.4 0.6 24 20-44 112-135 (286)
124 3qii_A PHD finger protein 20; 26.5 1.6E+02 0.0055 23.7 6.3 49 337-391 21-69 (85)
125 3drz_A BTB/POZ domain-containi 25.4 17 0.00059 29.4 0.4 39 109-149 18-61 (107)
126 2elq_A Zinc finger protein 406 25.1 10 0.00035 23.0 -0.8 21 25-45 9-29 (36)
127 1kbe_A Kinase suppressor of RA 24.9 17 0.00058 26.2 0.2 16 26-43 15-30 (49)
128 2nz0_B Potassium voltage-gated 24.9 12 0.0004 32.4 -0.7 48 100-149 32-86 (140)
129 2els_A Zinc finger protein 406 24.5 11 0.00037 22.9 -0.8 21 25-45 9-29 (36)
130 2drp_A Protein (tramtrack DNA- 24.5 22 0.00076 24.5 0.8 40 6-45 20-60 (66)
131 2elm_A Zinc finger protein 406 23.9 10 0.00035 23.5 -1.0 20 25-44 9-28 (37)
132 2elx_A Zinc finger protein 406 23.8 11 0.00038 22.4 -0.9 21 25-45 7-27 (35)
133 2diq_A Tudor and KH domain-con 23.5 1.2E+02 0.0042 24.2 5.2 52 336-392 31-83 (110)
134 2elr_A Zinc finger protein 406 23.3 11 0.00039 22.6 -0.8 21 25-45 9-29 (36)
135 2eos_A B-cell lymphoma 6 prote 23.1 14 0.00046 23.3 -0.5 23 25-47 11-33 (42)
136 1bbo_A Human enhancer-binding 23.0 21 0.00073 23.7 0.4 42 5-47 10-51 (57)
137 1nn7_A Potassium channel KV4.2 22.9 9 0.00031 31.3 -1.8 39 109-149 12-51 (105)
138 3p8b_B Transcription antitermi 22.9 1.6E+02 0.0054 24.9 6.1 53 281-337 91-146 (152)
139 3eph_A TRNA isopentenyltransfe 22.9 19 0.00065 36.4 0.2 32 25-56 360-397 (409)
140 1nz9_A Transcription antitermi 22.8 2.1E+02 0.0071 20.3 6.6 50 282-335 5-57 (58)
141 2elp_A Zinc finger protein 406 22.7 14 0.00047 22.5 -0.6 21 25-45 9-30 (37)
142 4a18_F RPL14; ribosome, eukary 22.6 1.9E+02 0.0066 24.8 6.5 48 281-335 6-55 (126)
143 1hr0_W Translation initiation 22.4 34 0.0012 26.0 1.5 54 304-358 11-67 (71)
144 3ntk_A Maternal protein tudor; 22.3 3.7E+02 0.013 22.9 8.9 72 252-337 26-98 (169)
145 2eon_A ZFP-95, zinc finger pro 21.9 15 0.0005 23.8 -0.6 23 25-47 12-34 (46)
146 2en7_A Zinc finger protein 268 21.6 12 0.00041 23.7 -1.0 22 25-46 12-33 (44)
147 1t62_A Conserved hypothetical 21.2 86 0.0029 28.0 4.1 15 336-350 64-78 (166)
148 2did_A Tripartite motif protei 21.0 32 0.0011 24.1 1.0 23 22-44 16-42 (53)
149 4hcz_A PHD finger protein 1; p 21.0 2.7E+02 0.0093 21.0 6.6 47 280-334 4-52 (58)
150 2ytg_A ZFP-95, zinc finger pro 20.9 16 0.00056 23.4 -0.5 23 24-46 11-33 (46)
151 2elt_A Zinc finger protein 406 20.9 14 0.00047 22.2 -0.8 21 25-45 9-29 (36)
152 2epu_A Zinc finger protein 32; 20.9 15 0.00051 23.6 -0.7 22 25-46 12-33 (45)
153 2elo_A Zinc finger protein 406 20.8 14 0.00049 22.4 -0.8 21 25-45 9-29 (37)
154 4a18_E RPL6; ribosome, eukaryo 20.7 89 0.003 28.7 4.2 36 339-378 46-81 (191)
155 3j21_5 50S ribosomal protein L 20.6 1.5E+02 0.0052 23.4 5.0 50 282-335 4-55 (83)
156 2ytp_A Zinc finger protein 484 20.5 14 0.00049 23.8 -0.9 23 25-47 12-34 (46)
157 1njq_A Superman protein; zinc- 20.5 10 0.00036 23.6 -1.5 22 25-46 6-27 (39)
158 1rim_A E6APC2 peptide; E6-bind 20.5 13 0.00044 22.5 -1.0 20 26-45 3-22 (33)
159 2eoy_A Zinc finger protein 473 20.3 16 0.00056 23.5 -0.6 23 25-47 12-34 (46)
No 1
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=100.00 E-value=5.2e-60 Score=401.46 Aligned_cols=110 Identities=62% Similarity=1.065 Sum_probs=107.4
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCcceeeccchhhhhhcCCCceeecccccccHHHHHHHhccccceEe
Q psy15371 51 QRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVV 130 (393)
Q Consensus 51 ~rqm~~~~~n~~~~i~~~S~~F~~~Fl~lLr~~~g~krv~aN~vY~eyI~dr~HvHMNaT~W~sLt~Fvk~Lgr~g~~~v 130 (393)
||||++|++||++||++||++|+++||+|||++||+|||+||+||||||+||+|||||||+|+|||+||+||||+|+|+|
T Consensus 2 ~Rqm~l~~en~~k~i~~fS~eF~~~Fl~lLr~~~g~krV~aN~vYnEyI~dk~HiHMNaT~W~tLT~Fvk~Lgr~G~c~V 81 (111)
T 2v1n_A 2 QRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTKWLGREGLCKV 81 (111)
T ss_dssp CCCCCCCCCCGGGCHHHHHHHHHHHHHHHHHHHTSSCEEEHHHHHHHHTTSSCCCCGGGSSCSSHHHHHHHHTTTTSEEE
T ss_pred hhHHHHHHhCHhhHHHHHHHHHHHHHHHHHHHhcCCcEeehhHHHHHHhcccccccccccccccHHHHHHHhccCCeEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccceEEEeecCCHHHHHHHHHHHHHHh
Q psy15371 131 DETEKGWFVTYIDRDPETIAFQQKMAKKEK 160 (393)
Q Consensus 131 ~et~kg~~i~~Id~~pe~~~r~~~~~~~~~ 160 (393)
||||+||||+|||+|||+++|+++..++++
T Consensus 82 ~etekG~~I~yId~~pe~l~r~~~~~kk~k 111 (111)
T 2v1n_A 82 DETPKGWYIQYIDRDPETIRRQLELEKKKK 111 (111)
T ss_dssp EEETTEEEEEECCSSHHHHHHHHHTGGGTC
T ss_pred ecCCCceEEEeecCCHHHHHHHHHHHhhcC
Confidence 999999999999999999999999888763
No 2
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=275.72 Aligned_cols=118 Identities=45% Similarity=0.758 Sum_probs=114.9
Q ss_pred CCCCCcccCceEEEEeeccCCcccccceeEEEEecCCceEEEEEcCCCcEEEeecCceeeecCCCCCeEEEEecCccCce
Q psy15371 276 SGEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEK 355 (393)
Q Consensus 276 ~r~~~WL~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETVIP~~G~~V~VV~G~~RG~~ 355 (393)
+++++||+|||+|||+++++++|||++||+|++|.++|+|+|+|+++|++|.|+|+|||||||++|++||||+|+|||++
T Consensus 9 ~~~~~Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V~~~~~c~V~l~~~g~~v~v~q~~LETViP~~g~~V~Iv~G~~rG~~ 88 (127)
T 2ckk_A 9 ARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNE 88 (127)
T ss_dssp CCCSCCCCTTBEEEECCSTTCGGGTTCEEEEEEEETTTEEEEEETTTCCEEEEEGGGEEECCCCTTCEEEECSSTTTTCE
T ss_pred CCCCCcccCCeEEEEEEccCCCcccCceEEEEEecCCCeEEEEECCCCCEEEEchHHcEEecCCCCCEEEEEecccCCcE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCceEEEEecCCCCCCceeeeccccccccC
Q psy15371 356 AVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI 393 (393)
Q Consensus 356 G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddicKl 393 (393)
|+|+++|.++++|+|+|++||.+++.+..++|||||||
T Consensus 89 g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~ 126 (127)
T 2ckk_A 89 GTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKL 126 (127)
T ss_dssp EEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEB
T ss_pred EEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhhcc
Confidence 99999999999999999999999988878999999986
No 3
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=96.94 E-value=0.0021 Score=47.70 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=42.3
Q ss_pred cCCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCce-eeecccccccc
Q psy15371 337 IPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKV-VRNIDYSHICK 392 (393)
Q Consensus 337 IP~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~-v~~l~yddicK 392 (393)
-...|+.|.|+.|++.|..|++.++|.++..+.|.++- -|+. -..+++++|-+
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~---~Gr~t~v~l~~~~vek 57 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTI---FGRETPVELDFSQVVK 57 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEES---SSSEEEEEECGGGEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEe---CCCEEEEEECHHHEEE
Confidence 34789999999999999999999999998888777764 3332 23588887755
No 4
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.55 E-value=0.0036 Score=47.22 Aligned_cols=54 Identities=7% Similarity=0.050 Sum_probs=41.9
Q ss_pred ecCCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCceeeeccccccccC
Q psy15371 336 VIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI 393 (393)
Q Consensus 336 VIP~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddicKl 393 (393)
+-+.+|+.|.|+.|++.|..|++.++|.+ .++|.+...... ..+ .++|.+|.|+
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V~v~~fg~~-tpv-el~~~qv~K~ 59 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVDGN--KITIMPKHEDLK-DML-EFPAQELRKY 59 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCBTT--EEEEEECCSSCC-SCE-EEETTTEEEC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEEEEEecCCC-ceE-EEcHHHEEEC
Confidence 34589999999999999999999999986 667776532222 245 5999998875
No 5
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=95.67 E-value=0.017 Score=50.28 Aligned_cols=52 Identities=25% Similarity=0.271 Sum_probs=43.7
Q ss_pred cCCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCc--eeeecccccccc
Q psy15371 337 IPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNK--VVRNIDYSHICK 392 (393)
Q Consensus 337 IP~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~--~v~~l~yddicK 392 (393)
-+.+|+.|.|+.|++.|..|++.++|.++..|.|.+.-- |+ .+ .|++++|-+
T Consensus 91 ~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~---gr~tpv-el~~~~v~~ 144 (152)
T 3p8b_B 91 GLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDA---IVPIPV-TIKGDYVRL 144 (152)
T ss_dssp TCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSC---SSCCEE-EEEGGGEEE
T ss_pred cCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEec---ceeEEE-EECHHHEEE
Confidence 348999999999999999999999999999999998862 33 34 588888754
No 6
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=95.43 E-value=0.012 Score=47.20 Aligned_cols=61 Identities=16% Similarity=0.377 Sum_probs=51.0
Q ss_pred eeeecchhhhc-cC-cCccccccCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCcceeecc
Q psy15371 25 RWYCQMCQKQC-RD-ENGFKCHTSSEAHQRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFAN 92 (393)
Q Consensus 25 rwyCQ~CqKQC-RD-eNGFKcH~~SesH~rqm~~~~~n~~~~i~~~S~~F~~~Fl~lLr~~~g~krv~aN 92 (393)
||||.-|..-. +| .++.|-|+.+-.|++.+..+ ++.|-++-.+.+++-..+.|.+-.+..+
T Consensus 3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y-------y~~~~~~~~~~~id~~~~a~~~g~~~~~ 65 (77)
T 3cw1_L 3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY-------YCKWMEEQAQSLIDKTTAAFQQGKIPPT 65 (77)
T ss_pred CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 79999999999 78 78899999999999999644 7777777788888888888877766544
No 7
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=95.22 E-value=0.017 Score=49.75 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=30.8
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEE
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVE 371 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~ 371 (393)
..|+.|+||.|.++|..|+++.++.+++.|.|+
T Consensus 44 kkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VE 76 (120)
T 1vq8_T 44 NAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 76 (120)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred cCCCEEEEEecCCCCCEEEEEEEECCCCEEEEe
Confidence 779999999999999999999999999988764
No 8
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=95.19 E-value=0.016 Score=50.46 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.5
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEE
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVE 371 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~ 371 (393)
..|+.|+||.|.|+|..|+++.++.+++.|.|+
T Consensus 51 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 83 (127)
T 3u5e_Y 51 RRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD 83 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred cCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence 679999999999999999999999999988765
No 9
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.11 E-value=0.019 Score=49.53 Aligned_cols=33 Identities=27% Similarity=0.571 Sum_probs=30.3
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEE
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVE 371 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~ 371 (393)
..|+.|.||.|.++|..|+++.++.+++.|.|+
T Consensus 47 kkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VE 79 (121)
T 3j21_U 47 RVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE 79 (121)
T ss_dssp CSSSEEEECSSSCSSEEEEEEEEETTTTEEEET
T ss_pred ccCCEEEEeecCCCCcEeEEEEEEecCCEEEEe
Confidence 679999999999999999999999999977663
No 10
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=94.84 E-value=0.034 Score=46.09 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=28.9
Q ss_pred CCeEEEEecCccCceEEEEEeeCCCceEEEE
Q psy15371 341 GRQVLILCGKYKGEKAVLKDINIDDCNANVE 371 (393)
Q Consensus 341 G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~ 371 (393)
|+.|+||.|.++|..|++++++.+++.|.|+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVe 31 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG 31 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 7899999999999999999999999988774
No 11
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=94.70 E-value=0.039 Score=49.21 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=39.9
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCc-eeeecccccccc
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNK-VVRNIDYSHICK 392 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~-~v~~l~yddicK 392 (393)
.+|+.|.|+.|++.|..|++..+|.++..+.|.++- -|+ +-..|+|++|-+
T Consensus 129 ~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~i---fgr~t~vel~~~qvek 180 (181)
T 2jvv_A 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI---FGRATPVELDFSQVEK 180 (181)
T ss_dssp CTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEE---TTEEEEEEECTTTEEE
T ss_pred CCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEE---CCCCEEEEECHHHEEE
Confidence 799999999999999999999999888777665553 122 223588888765
No 12
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.63 E-value=0.059 Score=42.55 Aligned_cols=48 Identities=31% Similarity=0.437 Sum_probs=38.6
Q ss_pred CCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCceeeeccccccc
Q psy15371 338 PNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHIC 391 (393)
Q Consensus 338 P~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddic 391 (393)
|.+|..|.|..|+|+|..|.+.+.+... |.|+|.+ ..++| .++.+++.
T Consensus 18 ~liGktV~I~kGpyKG~~GiVkd~t~~~--~RVELhs---~~K~V-tV~r~~l~ 65 (71)
T 2e70_A 18 ELIGQTVRISQGPYKGYIGVVKDATEST--ARVELHS---TCQTI-SVDRQRLT 65 (71)
T ss_dssp SSTTSEEEECSSTTTTCEEEEEEECSSC--EEEEESS---SCCEE-EECTTTEE
T ss_pred ccCCCEEEEeccCCCCeEEEEEECCCCe--EEEEecC---CceEE-EEEhhhcc
Confidence 5689999999999999999999888765 5888887 45555 47777664
No 13
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=94.61 E-value=0.03 Score=49.12 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=29.7
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEE
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANV 370 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V 370 (393)
..|+.|+||.|.|+|..|+++.++.+++.|.|
T Consensus 50 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~V 81 (135)
T 4a17_S 50 RKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHV 81 (135)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred cCCCEEEEeecCCCCceeeEEEEEcCCCEEEE
Confidence 67999999999999999999999999997765
No 14
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=94.60 E-value=0.032 Score=49.44 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=31.5
Q ss_pred cC-CCCCeEEEEecCccCce-EEEEEeeCCCceEEEE
Q psy15371 337 IP-NLGRQVLILCGKYKGEK-AVLKDINIDDCNANVE 371 (393)
Q Consensus 337 IP-~~G~~V~VV~G~~RG~~-G~LisiD~~k~~a~V~ 371 (393)
+| ..|+.|.||.|.++|.. |+++.++.+++.|.|+
T Consensus 47 ~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VE 83 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIE 83 (145)
T ss_dssp CBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEET
T ss_pred cccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEe
Confidence 35 77999999999999999 9999999999988764
No 15
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=94.60 E-value=0.029 Score=50.05 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=29.8
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEE
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANV 370 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V 370 (393)
..|+.|+||.|.++|..|+++.++.+++.|.|
T Consensus 50 kKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~V 81 (150)
T 3iz5_Y 50 RKDDEVQVVRGSYKGREGKVVQVYRRRWVIHV 81 (150)
T ss_dssp CSSSEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEeecCCCCccceEEEEEcCCCEEEE
Confidence 67999999999999999999999999997765
No 16
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=94.38 E-value=0.039 Score=46.83 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=31.5
Q ss_pred cC-CCCCeEEEEecCccCceEEEEEeeCCCceEEEE
Q psy15371 337 IP-NLGRQVLILCGKYKGEKAVLKDINIDDCNANVE 371 (393)
Q Consensus 337 IP-~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~ 371 (393)
+| ..|+.|.||.|.++|..|++++++.++..|.|+
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVE 40 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE 40 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEET
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEe
Confidence 45 789999999999999999999999999877764
No 17
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=94.21 E-value=0.032 Score=47.58 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=31.7
Q ss_pred C-CCCCeEEEEecCccCceEEEEEeeCCCceEEEE
Q psy15371 338 P-NLGRQVLILCGKYKGEKAVLKDINIDDCNANVE 371 (393)
Q Consensus 338 P-~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~ 371 (393)
| ..|+.|.||.|.++|..|++++++.+++.|.|+
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VE 49 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE 49 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 5 789999999999999999999999999988775
No 18
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=93.54 E-value=0.25 Score=38.23 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=43.1
Q ss_pred ccCceEEEEeeccCCcccccceeEEEEecCCceEEEEEcCCCc-EEEeecCceeeecCC
Q psy15371 282 LHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKH-KIKLDQEHLETVIPN 339 (393)
Q Consensus 282 L~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~-~l~VdQ~~LETVIP~ 339 (393)
+.||..|+|++ ..+-||.=.|.|..|.|+..+++.=..+=+ .|.+.-+.||.|-+.
T Consensus 2 ilPG~~V~V~n--p~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~~~~~ 58 (66)
T 2jz2_A 2 IFPGATVRVTN--VDDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEAVKPI 58 (66)
T ss_dssp CCTTCEEEECC--TTSTTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEECCCC
T ss_pred ccCCCEEEEeC--CCCcccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHceecccc
Confidence 56999999986 355599999999999997777665443333 559999999988653
No 19
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=93.45 E-value=0.082 Score=44.23 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=28.9
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEE
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVE 371 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~ 371 (393)
..|+.|+||.|.++|..|++++++.+ ..|.|+
T Consensus 5 kkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVe 36 (102)
T 3r8s_U 5 RRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE 36 (102)
T ss_dssp CSSCEEEECSSSSTTCEEEEEEEETT-TEEEET
T ss_pred cCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEe
Confidence 57999999999999999999999999 877653
No 20
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=92.64 E-value=0.23 Score=38.94 Aligned_cols=43 Identities=14% Similarity=0.364 Sum_probs=33.4
Q ss_pred CCcEEEeecCceeeecCCCCCeEEEEecCccCceEEEEEeeCCC
Q psy15371 322 SKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDINIDD 365 (393)
Q Consensus 322 ~g~~l~VdQ~~LETVIP~~G~~V~VV~G~~RG~~G~LisiD~~k 365 (393)
+|..+.++.+.|.- .-.+|+.|+|+.|.|.|.+|.++.++.+-
T Consensus 3 ~~~~i~~p~~~LrK-~F~~GDHVkVi~G~~~getGlVV~v~~d~ 45 (69)
T 2do3_A 3 SGSSGEFPAQELRK-YFKMGDHVKVIAGRFEGDTGLIVRVEENF 45 (69)
T ss_dssp SCSCCCCCCCCCCS-SCCTTCEEEESSSTTTTCEEEEEEECSSC
T ss_pred CCcEEEEcHHHcee-eccCCCeEEEeccEEcCceEEEEEEeCCE
Confidence 45556666666643 23789999999999999999999999553
No 21
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=92.44 E-value=0.61 Score=43.68 Aligned_cols=74 Identities=11% Similarity=0.205 Sum_probs=52.3
Q ss_pred EEEeeccCCcccccceeEEEEecCCceEEEEEcC----CCcEE--EeecCceeeecC-CCCCeEEEEecCccCceEEEEE
Q psy15371 288 VKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLD----SKHKI--KLDQEHLETVIP-NLGRQVLILCGKYKGEKAVLKD 360 (393)
Q Consensus 288 VKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d----~g~~l--~VdQ~~LETVIP-~~G~~V~VV~G~~RG~~G~Lis 360 (393)
+||..+ +..++|+..=+.-.+..... +| .+++| +++...+--.|| ..|..+||+.|.+.|.+|++.+
T Consensus 88 cKV~~k-----~~~~~G~~~l~~HDGrti~~-pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ 161 (213)
T 3kbg_A 88 LKVRSK-----VIAPGNRIQLGTHDGRTFIT-DDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISK 161 (213)
T ss_dssp EEEEEE-----EEEGGGEEEEEETTSCEEEE-CCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEEEEE
T ss_pred EEEEEE-----EEecCCeeEEEecCccEEEc-CCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEEEEE
Confidence 567655 55667777776543333333 33 56665 455555666777 9999999999999999999999
Q ss_pred eeCCCce
Q psy15371 361 INIDDCN 367 (393)
Q Consensus 361 iD~~k~~ 367 (393)
|..-.++
T Consensus 162 ie~~~gs 168 (213)
T 3kbg_A 162 IEAKEGS 168 (213)
T ss_dssp ECCCSCC
T ss_pred EEEccCC
Confidence 9865444
No 22
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=92.32 E-value=0.04 Score=47.61 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=34.5
Q ss_pred eeeecchhhhccCcCccccccCCHHHHHHHHHhhcCh
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNA 61 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~SesH~rqm~~~~~n~ 61 (393)
.|||..|.|.|..++-+..|..|--|.|++..+.+-|
T Consensus 50 pfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~~p 86 (124)
T 1zr9_A 50 LHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEP 86 (124)
T ss_dssp CSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSCS
T ss_pred ceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhccCC
Confidence 6999999999999999999999999999998887655
No 23
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=90.45 E-value=0.38 Score=47.84 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=41.3
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCc-eeeeccccccccC
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNK-VVRNIDYSHICKI 393 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~-~v~~l~yddicKl 393 (393)
.+|+.|.|+.|++.|..|++.++|.++..+.|.++- -|+ +-..|+|++|-++
T Consensus 300 ~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~i---fGR~tpVeL~~~qVek~ 352 (352)
T 2xhc_A 300 KVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTI---FGRETPVVLHVSEVEKI 352 (352)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEE---TTEEEEEEEEGGGEECC
T ss_pred CCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEE---CCCcEEEEEchHHEEEC
Confidence 789999999999999999999999988777776653 233 2235888887653
No 24
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=89.64 E-value=1.3 Score=42.67 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=34.0
Q ss_pred CCcEE--EeecCceeeecC-CCCCeEEEEecCccCceEEEEEeeCC
Q psy15371 322 SKHKI--KLDQEHLETVIP-NLGRQVLILCGKYKGEKAVLKDINID 364 (393)
Q Consensus 322 ~g~~l--~VdQ~~LETVIP-~~G~~V~VV~G~~RG~~G~LisiD~~ 364 (393)
.+++| +++...+--.|| ..|..+||+.|.+.|.+|++.++...
T Consensus 158 ~~Dtv~idl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~ 203 (260)
T 2xzm_W 158 IGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKH 203 (260)
T ss_dssp TTBEEEEETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEECC
T ss_pred cCCeEEEeCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEEec
Confidence 56666 555445666778 99999999999999999999987543
No 25
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=89.49 E-value=2.3 Score=33.66 Aligned_cols=76 Identities=12% Similarity=0.108 Sum_probs=52.6
Q ss_pred CHHHHHhhHHHHHHHhhhhhhhcCCCCCCcccCceEEEEeeccCCcc-cccceeEEEEecCCceEEEEEcCCCcEEEeec
Q psy15371 252 TALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGEK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQ 330 (393)
Q Consensus 252 saldeim~~~ee~kk~~~~~~~~~~r~~~WL~~~IvVKIidK~l~dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ 330 (393)
.+|+.||.++.+--.... .....| .+|-.|-+.- -.|+ ||- |.|.++.+...+.|...|-|..-.|+-
T Consensus 5 ~~Le~Lm~~m~~~y~~~~------~~~~~~-~~G~~c~a~~--~~d~~wyR--A~I~~~~~~~~~~V~fvDyGn~e~v~~ 73 (94)
T 3fdr_A 5 LQLDKLVNEMTQHYENSV------PEDLTV-HVGDIVAAPL--PTNGSWYR--ARVLGTLENGNLDLYFVDFGDNGDCPL 73 (94)
T ss_dssp CHHHHHHHHHHHHHTTCC------CCCCCC-CTTCEEEEEE--TTTTEEEE--EEEEEECTTSCEEEEETTTCCEEEECG
T ss_pred HHHHHHHHHHHHHHhcCC------CCCCCC-CCCCEEEEEE--CCCCeEEE--EEEEEECCCCeEEEEEEcCCCeEEEEH
Confidence 579999986766543311 233445 4555543431 2344 775 899999876789999999999999998
Q ss_pred CceeeecC
Q psy15371 331 EHLETVIP 338 (393)
Q Consensus 331 ~~LETVIP 338 (393)
++|-++.|
T Consensus 74 ~~lr~l~~ 81 (94)
T 3fdr_A 74 KDLRALRS 81 (94)
T ss_dssp GGCEECCG
T ss_pred HHhhhcCH
Confidence 88887665
No 26
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.59 E-value=0.67 Score=44.19 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=44.4
Q ss_pred cccceeEEEEecCCceEEEEE------cCCCcEE--EeecCceeeecC-CCCCeEEEEecCccCceEEEEEeeCC
Q psy15371 299 FYKKKGTVEKVIDKYAAIVSL------LDSKHKI--KLDQEHLETVIP-NLGRQVLILCGKYKGEKAVLKDINID 364 (393)
Q Consensus 299 yYkkKGvV~dV~d~~~c~V~l------~d~g~~l--~VdQ~~LETVIP-~~G~~V~VV~G~~RG~~G~LisiD~~ 364 (393)
+...+|++.=+.-.+...+.- ...+++| +++...+--.|| ..|..+||+.|.+.|.+|++.+|..-
T Consensus 131 ~~~~~G~~~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~ 205 (243)
T 3j20_E 131 RMIKGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRF 205 (243)
T ss_dssp EEETTTEEEECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCC
T ss_pred EEccCCeeEEEecCCceEEcccccCCCcccCCEEEEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEe
Confidence 555667776554333322221 1156665 444445555677 99999999999999999999999753
No 27
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=88.26 E-value=0.059 Score=49.72 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=29.9
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEE
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVE 371 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~ 371 (393)
..||.|.||.|.++|..|+++.++.+++.|.|+
T Consensus 70 kKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVE 102 (191)
T 3bbo_W 70 KVGDTVKVISGGEKGKIGEISKIHKHNSTVIIK 102 (191)
T ss_dssp CCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCS
T ss_pred ecCCEEEEeecCCCCceEEEEEEECCCCEEEEe
Confidence 679999999999999999999999998877653
No 28
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=87.61 E-value=0.93 Score=43.72 Aligned_cols=42 Identities=21% Similarity=0.451 Sum_probs=34.0
Q ss_pred CCcEE--EeecCceeeecC-CCCCeEEEEecCccCceEEEEEeeC
Q psy15371 322 SKHKI--KLDQEHLETVIP-NLGRQVLILCGKYKGEKAVLKDINI 363 (393)
Q Consensus 322 ~g~~l--~VdQ~~LETVIP-~~G~~V~VV~G~~RG~~G~LisiD~ 363 (393)
.+++| +++...+--.|| ..|..+||+.|.+.|.+|++.+|..
T Consensus 156 ~~DTv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~ 200 (265)
T 3iz6_D 156 ANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREK 200 (265)
T ss_dssp TTCEEEECSSSCCEEEEECCSTTCEEEECSSSSCSCEEEEEEEEC
T ss_pred cCCEEEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEE
Confidence 45555 455456666777 9999999999999999999999975
No 29
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=86.79 E-value=0.17 Score=43.04 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=33.7
Q ss_pred cccceeeeecchhhhccCcCccccccCCHHHHHHHHHh
Q psy15371 20 GLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLF 57 (393)
Q Consensus 20 GLqkLrwyCQ~CqKQCRDeNGFKcH~~SesH~rqm~~~ 57 (393)
+.....|||.+|.+.|..+..+..|..+-.|.+.+...
T Consensus 88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~ 125 (127)
T 1zu1_A 88 DGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR 125 (127)
T ss_dssp SCCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred cCCCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHh
Confidence 34567899999999999999999999999999998653
No 30
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=86.33 E-value=6.4 Score=33.63 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=53.2
Q ss_pred EeeccCCcccccceeEEEEecCCceEEEEEcCCCcEEEeecCceeee------cCCCCCeEEEEecCccCceEEEEEee-
Q psy15371 290 IVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETV------IPNLGRQVLILCGKYKGEKAVLKDIN- 362 (393)
Q Consensus 290 IidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETV------IP~~G~~V~VV~G~~RG~~G~LisiD- 362 (393)
|+.|+-...|| +|.|+++.....+.|..+|..-.-.+..+++... .|..|..|.|..-.-.=--|+.++..
T Consensus 12 V~akh~ngryy--~~~V~~~~~~~~y~V~F~DgS~s~dl~peDIvs~dc~~~GpP~~G~~V~V~W~DG~~y~a~f~g~~~ 89 (118)
T 2qqr_A 12 VISKHKNGRFY--QCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQVYGAKFVASHP 89 (118)
T ss_dssp EEEECTTSSEE--EEEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEECCCCCEE--eEEEEEEeeEEEEEEEcCCCCccCCCCHhhcccccccccCCCCCCCEEEEEcCCCCEeeeEEeceeE
Confidence 44555444488 7999999877788898886332335555554333 67999999998521111123333322
Q ss_pred CCCceEEEEecCCCCCCceeeeccccccc
Q psy15371 363 IDDCNANVELIDPHYDNKVVRNIDYSHIC 391 (393)
Q Consensus 363 ~~k~~a~V~l~~G~~~g~~v~~l~yddic 391 (393)
..-+ +|.+++ |..+ .+.=+||.
T Consensus 90 ~~~Y--~V~feD----gs~~-~~kR~~iy 111 (118)
T 2qqr_A 90 IQMY--QVEFED----GSQL-VVKRDDVY 111 (118)
T ss_dssp EEEE--EEEETT----SCEE-EECGGGEE
T ss_pred EEEE--EEEECC----CCEE-EEcHHHee
Confidence 1223 566665 3333 45656554
No 31
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=85.84 E-value=0.35 Score=41.02 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=31.6
Q ss_pred ceeeeecchhhhccCcCccccccCCHHHHHHHHHh
Q psy15371 23 KLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLF 57 (393)
Q Consensus 23 kLrwyCQ~CqKQCRDeNGFKcH~~SesH~rqm~~~ 57 (393)
+..|||.+|..+|..+..+..|..|.-|.+.+..+
T Consensus 30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~ 64 (127)
T 1zu1_A 30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRY 64 (127)
T ss_dssp BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHH
Confidence 34599999999999999999999999999988654
No 32
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=85.78 E-value=0.15 Score=48.43 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred eecCCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecC-CCCCCceeeecccccccc
Q psy15371 335 TVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELID-PHYDNKVVRNIDYSHICK 392 (393)
Q Consensus 335 TVIP~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~-G~~~g~~v~~l~yddicK 392 (393)
.+-+.+|+.|+|+.|++.|..|++.++|.++..+.|.+.- | ....| .|+|++|-|
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~ifg--r~tpv-~l~~~~vek 247 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFG--RMTPV-ELDFDQVEK 247 (248)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEeCC--CcEEE-EEcHHHEEe
Confidence 4456899999999999999999999999887766655442 1 12223 588887755
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=85.28 E-value=1 Score=43.39 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=43.5
Q ss_pred cccceeEEEEecCCceEEEEEcC----CCcEE--EeecCceeeecC-CCCCeEEEEecCccCceEEEEEeeC
Q psy15371 299 FYKKKGTVEKVIDKYAAIVSLLD----SKHKI--KLDQEHLETVIP-NLGRQVLILCGKYKGEKAVLKDINI 363 (393)
Q Consensus 299 yYkkKGvV~dV~d~~~c~V~l~d----~g~~l--~VdQ~~LETVIP-~~G~~V~VV~G~~RG~~G~LisiD~ 363 (393)
+...+|++.=+.-.+ .++..+| .+++| +++...+--.|| ..|..+||+.|.+.|.+|++.+|..
T Consensus 130 ~~~~~G~pql~tHDG-rti~~~dp~ik~~Dtv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~ 200 (261)
T 3u5c_E 130 QLGKKGVPYVVTHDG-RTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKER 200 (261)
T ss_dssp EECGGGCEEEEETTT-EEEESCCSSCCTTCEEEECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEEC
T ss_pred EEecCCceEEEEecc-eEEecCCCCcccCCEEEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEE
Confidence 344555555443322 3334333 45655 455556666777 9999999999999999999999975
No 34
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=80.61 E-value=6 Score=32.16 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=51.6
Q ss_pred CHHHHHhhHHHHHHHhhhhhhhcCCCCCCcccCceEEEEeeccCCcc-cccceeEEEEecCCceEEEEEcCCCcEEEeec
Q psy15371 252 TALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGEK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQ 330 (393)
Q Consensus 252 saldeim~~~ee~kk~~~~~~~~~~r~~~WL~~~IvVKIidK~l~dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ 330 (393)
.+|++||.++.+--.... .....|. +|-.|-.. .-.|+ ||- |+|.++.+...+.|...|-|....|+.
T Consensus 10 ~~l~~L~~~m~~~y~~~~------~~~~~~~-~G~~c~a~--~~~d~~wyR--A~V~~~~~~~~~~V~fvDyGn~e~v~~ 78 (110)
T 2diq_A 10 LQLDKLVNEMTQHYENSV------PEDLTVH-VGDIVAAP--LPTNGSWYR--ARVLGTLENGNLDLYFVDFGDNGDCPL 78 (110)
T ss_dssp HHHHHHHHHHHHHHTTSC------CCCCCCC-TTCEEEEC--CTTTCSCEE--EEECCCCSSSCEEEEETTTCCEEEECG
T ss_pred HHHHHHHHHHHHHHccCC------CCCCCCC-CCCEEEEE--ECCCCeEEE--EEEEEECCCCeEEEEEEeCCCeEEEeh
Confidence 469999986666433211 3334564 45444332 22344 775 889999776789999999999999999
Q ss_pred CceeeecC
Q psy15371 331 EHLETVIP 338 (393)
Q Consensus 331 ~~LETVIP 338 (393)
++|-++.|
T Consensus 79 ~~Lr~l~~ 86 (110)
T 2diq_A 79 KDLRALRS 86 (110)
T ss_dssp GGCEECCH
T ss_pred HHhhcCcH
Confidence 98887654
No 35
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=79.89 E-value=1.5 Score=38.43 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=30.3
Q ss_pred CCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCC
Q psy15371 338 PNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDN 379 (393)
Q Consensus 338 P~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g 379 (393)
..+|.-|+|+.|.|.|..++++++-.+++ |. + +||..|
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~~r-VL--V-DGp~~g 52 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQKK-VL--I-DGPKAG 52 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSSSE-EE--E-ECSSSS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecCCE-EE--E-EcCCCC
Confidence 36899999999999999999999977765 32 3 677643
No 36
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=78.44 E-value=21 Score=31.91 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=58.5
Q ss_pred EeeccCCcccccceeEEEEecCCceEEEEEcCCCcEEEeecCceeeecC-CCCCeEEEEecCccCceEEEEEeeCC--Cc
Q psy15371 290 IVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIP-NLGRQVLILCGKYKGEKAVLKDINID--DC 366 (393)
Q Consensus 290 IidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETVIP-~~G~~V~VV~G~~RG~~G~LisiD~~--k~ 366 (393)
|..+=-+++||- .|.|..+..+..+.|..+ +|..-.|.+.++=-|.| .++..|.-+.|..-+..|.+...+.+ +.
T Consensus 15 VfArWsd~~yyY-pG~V~~~~~~~~Y~V~Fd-DG~~k~v~~~divv~~~LP~~~~V~A~~~ddy~s~giI~~h~~~~~e~ 92 (156)
T 1ssf_A 15 VVAKWSSNGYFY-SGKITRDVGAGKYKLLFD-DGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGEL 92 (156)
T ss_dssp EEECSSCSSEEE-EEEEEECCTTTEEEEECT-TSCEEEEETTTEEEECCSCSSEEEEESSCTTTCEEEEEEEEEEETTEE
T ss_pred EEEEcCCCCccc-ccEEEEeccCCEEEEEEc-CCCeeEeeccceEEEeccCCCcEEEEccCCccccccEEEeecCCCCcE
Confidence 343434555442 389999988889999876 58888888778776777 67899999988888999999966443 33
Q ss_pred eEEEEe
Q psy15371 367 NANVEL 372 (393)
Q Consensus 367 ~a~V~l 372 (393)
.-.|++
T Consensus 93 ~Y~Ve~ 98 (156)
T 1ssf_A 93 YYSIEK 98 (156)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 335555
No 37
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=77.92 E-value=7 Score=30.68 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=43.0
Q ss_pred ccCceEEEEeeccCCcccccceeEEEEecC---CceEEEEEcC---CCcEE-EeecCceeeecCCCCC
Q psy15371 282 LHKNIIVKIVTKNLGEKFYKKKGTVEKVID---KYAAIVSLLD---SKHKI-KLDQEHLETVIPNLGR 342 (393)
Q Consensus 282 L~~~IvVKIidK~l~dgyYkkKGvV~dV~d---~~~c~V~l~d---~g~~l-~VdQ~~LETVIP~~G~ 342 (393)
+.+|-.|||..+ .+=||+..|.|..|.+ +|.+.|.... +|-.- ....+.||-|-|..|.
T Consensus 2 i~rGs~VrIlr~--eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe~v~~~~~k 67 (70)
T 1qp2_A 2 VQRGSKVRILRP--ESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELVEVEAPKAK 67 (70)
T ss_dssp CCTTCEEEECCT--TSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEEECCCCCSC
T ss_pred cCCCCEEEEcCc--cceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHeeEeccCccc
Confidence 457889999853 3339999999999976 4568888764 23322 5888999999875553
No 38
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=71.12 E-value=10 Score=29.80 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=39.6
Q ss_pred CCCCeEEEEecC--ccCceEEEEEeeCCC--ceEEEEecCCCCCCceeeecccccc
Q psy15371 339 NLGRQVLILCGK--YKGEKAVLKDINIDD--CNANVELIDPHYDNKVVRNIDYSHI 390 (393)
Q Consensus 339 ~~G~~V~VV~G~--~RG~~G~LisiD~~k--~~a~V~l~~G~~~g~~v~~l~yddi 390 (393)
.+|.+|+|++-+ |-+.+|++.++|.+. +-|.|.++.+.+.|-.--++.+++|
T Consensus 3 ~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~EL 58 (70)
T 1qp2_A 3 QRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDEL 58 (70)
T ss_dssp CTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGE
T ss_pred CCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHe
Confidence 479999999766 689999999999853 5689999988887753333555544
No 39
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=69.34 E-value=6.1 Score=33.97 Aligned_cols=89 Identities=21% Similarity=0.182 Sum_probs=52.9
Q ss_pred eeccCCcc-cccceeEEEEecCCceEEEEEcCCCcEEEeecCceee------ecCCCCCeEEEEe--cCccCceEEEEEe
Q psy15371 291 VTKNLGEK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLET------VIPNLGRQVLILC--GKYKGEKAVLKDI 361 (393)
Q Consensus 291 idK~l~dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LET------VIP~~G~~V~VV~--G~~RG~~G~Lisi 361 (393)
+.|+ .+| ||. |.|+++.....|.|..+|..-.-.+..+++-. =.|..|..|.|.. |..- -|+..+.
T Consensus 14 ~ak~-~ngryy~--~~V~~~~~~~~y~V~F~DgS~s~dl~PedIvs~dc~~~GpP~~G~~V~V~W~DG~~y--~a~f~g~ 88 (123)
T 2xdp_A 14 ITKH-RNTRYYS--CRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRDCLKLGPPAEGEVVQVKWPDGKLY--GAKYFGS 88 (123)
T ss_dssp CCCC-CCCCCCC--CEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCEE--EEEEEEE
T ss_pred EEEC-CCCcEEe--EEEEEEeeEEEEEEEcCCCCccCCCCHhHcccccccccCCCCCCCEEEEEcCCCCEE--eEEEeee
Confidence 3443 445 876 68888877777888887532222444433322 3689999999996 5422 2555555
Q ss_pred e-CCCceEEEEecCCCCCCceeeeccccccc
Q psy15371 362 N-IDDCNANVELIDPHYDNKVVRNIDYSHIC 391 (393)
Q Consensus 362 D-~~k~~a~V~l~~G~~~g~~v~~l~yddic 391 (393)
. ..-+ +|.+++ |..+ .+.=+||+
T Consensus 89 ~~~~~Y--tV~FeD----gs~~-~~kR~~iy 112 (123)
T 2xdp_A 89 NIAHMY--QVEFED----GSQI-AMKREDIY 112 (123)
T ss_dssp EEEEEE--EEECTT----SCEE-EEEGGGCC
T ss_pred eeEEEE--EEEECC----CCeE-EecHHHcc
Confidence 3 2333 566776 4433 46666665
No 40
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=68.91 E-value=32 Score=29.53 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=56.1
Q ss_pred CceEEEEeeccCCcccccceeEEEEecCCceEEEEEcCCCc-EEEeecCceeeecC-------CCCCeEEEEec-Cc---
Q psy15371 284 KNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKH-KIKLDQEHLETVIP-------NLGRQVLILCG-KY--- 351 (393)
Q Consensus 284 ~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~-~l~VdQ~~LETVIP-------~~G~~V~VV~G-~~--- 351 (393)
.++.|-|.... +.||+ |.|++|.+ ..+.|...++=. .-.|+-+++-++.| ..|+.|-|..= ..
T Consensus 4 ~~~~VEV~~~~--G~~y~--a~V~~v~~-d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep 78 (128)
T 3h8z_A 4 QGLPVEVRGSN--GAFYK--GFVKDVHE-DSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEP 78 (128)
T ss_dssp TTCEEEEECTT--SCEEE--EEEEEECS-SEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CC
T ss_pred cccEEEEecCC--CCEEE--EEEEEEeC-CcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCc
Confidence 57778887632 22887 99999864 578888865433 23677777777654 68999999852 12
Q ss_pred -cCceEEEEEeeCCCceEEEEec
Q psy15371 352 -KGEKAVLKDINIDDCNANVELI 373 (393)
Q Consensus 352 -RG~~G~LisiD~~k~~a~V~l~ 373 (393)
.--.|+++.+.++-+ .|.-.
T Consensus 79 ~gWw~a~I~~~kg~f~--~V~y~ 99 (128)
T 3h8z_A 79 CGWWLARVRMMKGDFY--VIEYA 99 (128)
T ss_dssp CEEEEEEEEEEETTEE--EEEET
T ss_pred CccEEEEEEEeeCCEE--EEEEc
Confidence 345788888887655 45533
No 41
>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*
Probab=68.17 E-value=0.23 Score=43.70 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=32.9
Q ss_pred eeeecchhhhccCcCccccccCCHHHHHHHHHhhcCh-hhHHHHHHHHHHHHHHHH
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNA-DQYLDEFSREFEEGYLEL 79 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~SesH~rqm~~~~~n~-~~~i~~~S~~F~~~Fl~l 79 (393)
.-||..|...+-| |.-|+.|+.|++-. +|. -..||..=..|..+|++.
T Consensus 87 ~GyCE~C~~~y~~---l~~H~~s~~Hr~fa----~~~n~~~lD~li~~l~~~f~~~ 135 (144)
T 4f9c_B 87 KGYCECCLQKYED---LETHLLSEQHRNFA----QSNQYQVVDDIVSKLVFDFVEY 135 (144)
T ss_dssp -CEETTTTEECSC---HHHHHHSHHHHHHH----TSSTTHHHHHHHTTSCCCBCCC
T ss_pred CCCccchhhhhhh---HHHHcCCHHHHHHH----hcccHHHHHHHHHHHHHHHHhc
Confidence 3699999988886 88999999996544 332 344666555555555543
No 42
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=66.00 E-value=22 Score=26.44 Aligned_cols=53 Identities=8% Similarity=0.081 Sum_probs=39.8
Q ss_pred ecCCCCCeEEEEe-cCccCceEEEEEeeCCCceEEEEecCCCCCCceeeecccccccc
Q psy15371 336 VIPNLGRQVLILC-GKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICK 392 (393)
Q Consensus 336 VIP~~G~~V~VV~-G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddicK 392 (393)
..|++|+.++... ..-.--.|++.+++.++..+.|...+ -|. .+.+++.+|.-
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvd---YGn-~e~V~~~~Lrp 60 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAG---YGN-AEVTPLLNLKP 60 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETT---TTE-EEEEEGGGEEC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEe---cCC-EEEEeHHHcEe
Confidence 4579999999996 44456779999999877788888776 344 35688887753
No 43
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=63.89 E-value=21 Score=27.71 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=37.4
Q ss_pred CCCCCeEEEEe-cCccCceEEEEEeeCCCceEEEEecCCCCCCceeeecccccccc
Q psy15371 338 PNLGRQVLILC-GKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICK 392 (393)
Q Consensus 338 P~~G~~V~VV~-G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddicK 392 (393)
|++|+.++... ..-.--.|++++++.+...+.|...+ -|. ...+++.+|..
T Consensus 18 ~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvD---YGN-~e~V~~~~Lr~ 69 (77)
T 3pnw_C 18 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFID---YGN-YEEVLLSNIKP 69 (77)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETT---TCC-EEEEEGGGEEC
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEc---CCC-eEEEeHHHeEE
Confidence 46799999986 44456779999999877777787765 344 45688888754
No 44
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=60.89 E-value=21 Score=27.60 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=34.5
Q ss_pred CCcc-cccceeEEEEecCCceEEEEEcCCCcEEEeecCceeeecCC
Q psy15371 295 LGEK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPN 339 (393)
Q Consensus 295 l~dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETVIP~ 339 (393)
.+|+ ||- |.|.+|.+..+++|...| |....|...+|-+....
T Consensus 17 W~D~~yYp--A~I~si~~~~~Y~V~F~d-G~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 17 WSDCRFYP--AKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (67)
T ss_dssp CTTSCEEE--EEEEEECTTSEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred cCCCCEee--EEEEEECCCCeEEEEEeC-CceEEEeHHHcccCCcc
Confidence 3777 886 899999987899999987 99999999999887653
No 45
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=60.78 E-value=19 Score=26.21 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=33.2
Q ss_pred Ccc-cccceeEEEEecC-CceEEEEEcCCCcEEEeecCceeeecC
Q psy15371 296 GEK-FYKKKGTVEKVID-KYAAIVSLLDSKHKIKLDQEHLETVIP 338 (393)
Q Consensus 296 ~dg-yYkkKGvV~dV~d-~~~c~V~l~d~g~~l~VdQ~~LETVIP 338 (393)
.|+ ||. |+|.+|.. ...|.|...|-|..-.|+.+.|-++.|
T Consensus 16 ~Dg~wYr--A~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 16 EDGCIYP--ATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp TTSCEEE--EEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred CCCCEEE--EEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 455 776 89999975 579999999999988998888877544
No 46
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.76 E-value=17 Score=28.39 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=32.6
Q ss_pred cc-cccceeEEEEecCCceEEEEEcCCCcEEEeecCceeeecCC
Q psy15371 297 EK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPN 339 (393)
Q Consensus 297 dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETVIP~ 339 (393)
|+ ||- |.|.+|.+..+|+|...|- ..-.|+.++|-++-|.
T Consensus 22 Dg~~Y~--A~I~~v~~~~~~~V~f~Dy-n~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 22 DCRYYP--AKIEAINKEGTFTVQFYDG-VIRCLKRMHIKAMPED 62 (74)
T ss_dssp SSSEEE--EEEEEESTTSSEEEEETTS-CEEEECGGGEECCCGG
T ss_pred CCCEEE--EEEEEECCCCEEEEEEecC-CeEEecHHHCeeCChh
Confidence 66 776 8999998767999999864 7678999999888763
No 47
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=59.47 E-value=7.2 Score=29.84 Aligned_cols=31 Identities=23% Similarity=0.137 Sum_probs=24.5
Q ss_pred HHHHHHHhccccc-eEeeccccceEEEeecCC
Q psy15371 115 LTEFVKHLGKSGK-CVVDETEKGWFVTYIDRD 145 (393)
Q Consensus 115 Lt~Fvk~Lgr~g~-~~v~et~kg~~i~~Id~~ 145 (393)
+..|+.||-..|+ |+|.+++.|=+|...|.+
T Consensus 15 aqaf~dyL~~~~I~~~v~~~~~~~~Lwl~d~~ 46 (70)
T 2gqc_A 15 LAGFVGLLRRLNVPHRVSEESGQQVLWVPDER 46 (70)
T ss_dssp GGGHHHHHHTTTCCSEEEEETTEEEEECCCSS
T ss_pred HHHHHHHHHHCCCcEEEEECCCceEEEEcCHH
Confidence 5679999999999 999988877556655543
No 48
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=58.96 E-value=20 Score=30.12 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=46.0
Q ss_pred eeEEEEecCCceEEEEEcCCCcEE--EeecCceeeecCCCCCeEEEEecCccCceEEEEEeeCC
Q psy15371 303 KGTVEKVIDKYAAIVSLLDSKHKI--KLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDINID 364 (393)
Q Consensus 303 KGvV~dV~d~~~c~V~l~d~g~~l--~VdQ~~LETVIP~~G~~V~VV~G~~RG~~G~LisiD~~ 364 (393)
.|+|....+.+...|.+.+ |..+ .+...+--.+-|.+|+.|.|-.-+|-...|.++.|-..
T Consensus 35 ~G~Vi~~lgn~~y~V~~~d-G~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r 97 (117)
T 2oqk_A 35 YGQVQRMLGNGRLDAYCFD-GQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYTP 97 (117)
T ss_dssp EEEEEEEEETTEEEEEETT-SCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEECCH
T ss_pred EEEEEEEcCCCEEEEEeCC-CCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEech
Confidence 4788888876788888875 5543 67777666777899999999877676678888777543
No 49
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=57.86 E-value=58 Score=28.49 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=47.9
Q ss_pred HHHHHhhHHHHHHHhhhhhhhcCCCC--CCcccCceEEEEeeccCCcc-cccceeEEEEecCCceEEEEEcCCCcEEEee
Q psy15371 253 ALEQIKLEEEEAKKKRIDQERQNSGE--ESWLHKNIIVKIVTKNLGEK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLD 329 (393)
Q Consensus 253 aldeim~~~ee~kk~~~~~~~~~~r~--~~WL~~~IvVKIidK~l~dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~Vd 329 (393)
.|++||+++.+.-... +... ..| .+|-.|-..- -.|+ +|- |+|.+|.+ .++.|...|-|....|+
T Consensus 28 ~l~~l~~~l~~~~~~~------~~~~~~~~~-~~g~~c~a~~--~~d~~wyR--a~V~~v~~-~~~~V~~vDyG~~~~v~ 95 (218)
T 2wac_A 28 KLESLMSKLHADFQSN------PPIAGSYTP-KRGDLVAAQF--TLDNQWYR--AKVERVQG-SNATVLYIDYGNKETLP 95 (218)
T ss_dssp HHHHHHHHHHHHHHHS------CCCTTSCCC-CTTCEEEEEC--TTTCCEEE--EEEEEEET-TEEEEEETTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhhC------CCCCCCccC-CcCCEEEEEE--CCCCeEEE--EEEEEecC-CeEEEEEEecCCeEEEc
Confidence 4888887555532211 1122 224 4555554432 1344 765 89999987 79999999999998888
Q ss_pred cCceeeecC
Q psy15371 330 QEHLETVIP 338 (393)
Q Consensus 330 Q~~LETVIP 338 (393)
.+.|-++.|
T Consensus 96 ~~~l~~l~~ 104 (218)
T 2wac_A 96 TNRLAALPP 104 (218)
T ss_dssp GGGEEECCG
T ss_pred hHHcccCCh
Confidence 888877655
No 50
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=56.81 E-value=56 Score=28.89 Aligned_cols=75 Identities=11% Similarity=0.205 Sum_probs=47.2
Q ss_pred HHHHHhhHHHHHHHhhhhhhhcCCCCCCcccCceEEEEeeccCCcc-cccceeEEEEecCCceEEEEEcCCCcEEEeecC
Q psy15371 253 ALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGEK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQE 331 (393)
Q Consensus 253 aldeim~~~ee~kk~~~~~~~~~~r~~~WL~~~IvVKIidK~l~dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~ 331 (393)
.|++||+++.+--... +..... +.+|-.+=.. ...|+ +|- |.|.++.+...+.|...|-|....|+.+
T Consensus 44 ~l~~L~~~l~~~~~~~------~~~~~~-~~~G~~c~a~--~~~d~~wyR--a~V~~~~~~~~~~V~~vDyG~~~~v~~~ 112 (201)
T 4b9w_A 44 KLDDLNQSLADYCAQK------PPNGFK-AEIGRPCCAF--FSGDGNWYR--ALVKEILPSGNVKVHFVDYGNVEEVTTD 112 (201)
T ss_dssp HHHHHHHHHHHHHHSS------SCCCCC-CCTTCEEEEE--ETTTTEEEE--EEEEEECTTSCEEEEETTTCCEEEECGG
T ss_pred HHHHHHHHHHHHHhcC------CCCCCC-CCCCCEEEEE--ECCCCeEEE--EEEEEECCCCeEEEEEEccCCEEEEEHH
Confidence 5788877554432211 111122 3455544332 22455 775 7899998777899999999998888888
Q ss_pred ceeeecC
Q psy15371 332 HLETVIP 338 (393)
Q Consensus 332 ~LETVIP 338 (393)
.|-+..|
T Consensus 113 ~l~~l~~ 119 (201)
T 4b9w_A 113 QLQAILP 119 (201)
T ss_dssp GEEECCG
T ss_pred HhccChH
Confidence 8776544
No 51
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=56.58 E-value=96 Score=26.66 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=53.9
Q ss_pred EeeccCCcc-cccceeEEEEecCCceEEEEEcCCCcEEEeecCceeeecC-CCCCeEEEEecCccCceEEEEEeeCCCc-
Q psy15371 290 IVTKNLGEK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIP-NLGRQVLILCGKYKGEKAVLKDINIDDC- 366 (393)
Q Consensus 290 IidK~l~dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETVIP-~~G~~V~VV~G~~RG~~G~LisiD~~k~- 366 (393)
|..+=-.++ ||- |.|..+..+..-.|..+ +|....|..+++=..=| .+|-.|.-+.+..-+..|+++....+..
T Consensus 11 V~AkWsdn~~yYp--G~V~~~~~~~ky~V~Fd-Dg~~~~v~~k~iiv~d~ip~g~~V~A~teddy~~~GiI~~~k~~~~e 87 (123)
T 2g3r_A 11 VVAKWSSNGYFYS--GKITRDVGAGKYKLLFD-DGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGE 87 (123)
T ss_dssp EEEECTTTCCEEE--EEEEEEEETTEEEEEET-TSCEEEEEGGGEECCSSCCTTCEEEEECTTSCEEEEEEEEEEEETTE
T ss_pred EEEEeccCCcCcc--cEEEEeccCCeEEEEEc-CCCeeEeecceEEEecccCCCcEEEEeecCccccceEEEEEecCCCe
Confidence 333434555 665 88877666777888877 46666666666542224 4799999999999999999997754333
Q ss_pred -eEEEEe
Q psy15371 367 -NANVEL 372 (393)
Q Consensus 367 -~a~V~l 372 (393)
.-.|++
T Consensus 88 ~~Y~Ve~ 94 (123)
T 2g3r_A 88 LYYSIEK 94 (123)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 334554
No 52
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=55.46 E-value=40 Score=27.02 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=38.7
Q ss_pred cCCCCCeEEEEe-cCccCceEEEEEeeCCCceEEEEecCCCCCCceeeeccccccc
Q psy15371 337 IPNLGRQVLILC-GKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHIC 391 (393)
Q Consensus 337 IP~~G~~V~VV~-G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddic 391 (393)
.|.+|+.++... +.-.--.|++.+++.....+.|...+ -|. .+.+++.+|.
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiD---YGN-~E~V~~~~Lr 61 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTG---YGN-REEQNLSDLL 61 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETT---TCC-EEEEEGGGCB
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEec---CCC-EEEEcHHHcc
Confidence 579999999996 45566789999999876777888765 344 4568888875
No 53
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.12 E-value=32 Score=26.72 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=37.4
Q ss_pred ecCCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCceeeeccccccc
Q psy15371 336 VIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHIC 391 (393)
Q Consensus 336 VIP~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddic 391 (393)
..|++|+.|+-..-.-.=-.|++.+++.+ ..++|...++ ..+.++..+|.
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~~-~~~~V~f~Dy-----n~e~v~~~~lr 57 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKE-GTFTVQFYDG-----VIRCLKRMHIK 57 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTT-SSEEEEETTS-----CEEEECGGGEE
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCC-CEEEEEEecC-----CeEEecHHHCe
Confidence 45799999999965445578999999875 5678888873 24567777764
No 54
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.97 E-value=13 Score=29.64 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=24.9
Q ss_pred CCCCCeEEEEecCccCceEEEEEeeCCCc
Q psy15371 338 PNLGRQVLILCGKYKGEKAVLKDINIDDC 366 (393)
Q Consensus 338 P~~G~~V~VV~G~~RG~~G~LisiD~~k~ 366 (393)
..+|.-|.++.|.|+|..+.++++-.+++
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~ 32 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIIDKNF 32 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECSSSC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcCCCE
Confidence 47899999999999999999999755555
No 55
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=54.30 E-value=28 Score=28.12 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=39.3
Q ss_pred CCcccCceEEEEeeccCCcc-cccceeEEEEecCCceEEEEEcCCCcEEEeecCceeeecCCC
Q psy15371 279 ESWLHKNIIVKIVTKNLGEK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNL 340 (393)
Q Consensus 279 ~~WL~~~IvVKIidK~l~dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETVIP~~ 340 (393)
..|..-+ .| ..+ .+|+ ||- |.|.+|.+..+.+|...| |.+..|...+|-++....
T Consensus 20 ~~f~vGd-~V--lAr-W~D~~yYP--AkI~sV~~~~~YtV~F~D-G~~etvk~~~IKp~~~~~ 75 (85)
T 3qii_A 20 SEFQINE-QV--LAC-WSDCRFYP--AKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAFSKDQ 75 (85)
T ss_dssp -CCCTTC-EE--EEE-CTTSCEEE--EEEEEECTTSEEEEEETT-SCEEEEEGGGEEECC---
T ss_pred cccccCC-EE--EEE-eCCCCEee--EEEEEECCCCeEEEEEeC-CCeEEecHHHcccCChhh
Confidence 4564333 33 333 3777 886 899999887899999987 999999999998876643
No 56
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=52.48 E-value=36 Score=26.33 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=34.7
Q ss_pred Ccc-cccceeEEEEecC-CceEEEEEcCCCcEEEeecCceeeecCC
Q psy15371 296 GEK-FYKKKGTVEKVID-KYAAIVSLLDSKHKIKLDQEHLETVIPN 339 (393)
Q Consensus 296 ~dg-yYkkKGvV~dV~d-~~~c~V~l~d~g~~l~VdQ~~LETVIP~ 339 (393)
.|+ ||- ++|.+|.. ...|.|...|-|..-.|+.++|-++-|.
T Consensus 22 ~Dg~wYR--A~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 22 EDNKFYR--AEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp TTCCEEE--EEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred CCCCEEE--EEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence 355 776 78999975 4789999999999999999999887664
No 57
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=57.75 E-value=2.9 Score=24.04 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.2
Q ss_pred eeecchhhhccCcCccccccCC
Q psy15371 26 WYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~~S 47 (393)
+-|..|.+.|.....+.-|..+
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~~ 25 (30)
T 2lvr_A 4 YVCIHCQRQFADPGALQRHVRI 25 (30)
Confidence 5699999999999999988753
No 58
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=52.18 E-value=29 Score=27.88 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=40.1
Q ss_pred CCcccCceEEEEeeccCCcc-cccceeEEEEecC-CceEEEEEcCCCcEEEeecCceeeecCC
Q psy15371 279 ESWLHKNIIVKIVTKNLGEK-FYKKKGTVEKVID-KYAAIVSLLDSKHKIKLDQEHLETVIPN 339 (393)
Q Consensus 279 ~~WL~~~IvVKIidK~l~dg-yYkkKGvV~dV~d-~~~c~V~l~d~g~~l~VdQ~~LETVIP~ 339 (393)
..| .+|-.|-.. .-.|| ||. |+|.+|.. ...|.|...|-|..-.|+.++|-++-|.
T Consensus 9 ~~~-kvGd~C~A~--ys~Dg~wYr--A~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~ 66 (88)
T 1g5v_A 9 QQW-KVGDKCSAI--WSEDGCIYP--ATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 66 (88)
T ss_dssp CCC-CSSCEEEEE--CTTTCCEEE--EEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC--
T ss_pred CCC-CCCCEEEEE--ECCCCCEEE--EEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCChh
Confidence 356 445554443 23466 887 89999975 4799999999999989998998876553
No 59
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=51.90 E-value=15 Score=32.51 Aligned_cols=26 Identities=38% Similarity=0.701 Sum_probs=22.6
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCC
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINID 364 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~ 364 (393)
.+|.-|+|+.|.|.|..+.++.+-.+
T Consensus 6 kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 6 KYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred cCCeEEEEecCCcCCCEEEEEEecCC
Confidence 57888999999999999999988554
No 60
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=51.75 E-value=10 Score=33.12 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=28.8
Q ss_pred CCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCC
Q psy15371 338 PNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHY 377 (393)
Q Consensus 338 P~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~ 377 (393)
..+|.-|+|+.|.|.|..+++++|-.+++ |.| +||.
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD~~r-vLV---dG~~ 42 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVDQNR-ALV---DAPD 42 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECSSSE-EEE---EETT
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcCCCe-EEE---eCCC
Confidence 46899999999999999999999976664 333 5664
No 61
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=56.90 E-value=3.1 Score=23.51 Aligned_cols=22 Identities=18% Similarity=0.496 Sum_probs=19.0
Q ss_pred eeecchhhhccCcCccccccCC
Q psy15371 26 WYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~~S 47 (393)
+-|..|.|.|.....++-|..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~ 24 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLANHIRH 24 (26)
Confidence 5699999999999999988653
No 62
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=51.12 E-value=46 Score=25.12 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=36.6
Q ss_pred eeEEEEecCCceEEEEEcCCCcEE--EeecCcee-eecCCCCCeEEEEecCccCceEEEE
Q psy15371 303 KGTVEKVIDKYAAIVSLLDSKHKI--KLDQEHLE-TVIPNLGRQVLILCGKYKGEKAVLK 359 (393)
Q Consensus 303 KGvV~dV~d~~~c~V~l~d~g~~l--~VdQ~~LE-TVIP~~G~~V~VV~G~~RG~~G~Li 359 (393)
.|+|......+...|.+.+ |..+ .+.-..-- .+-|.+|+.|.|-.-+|-...|.++
T Consensus 9 ~G~Vi~~lg~~~y~V~~~~-g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~ 67 (71)
T 1ah9_A 9 QGTVLETLPNTMFRVELEN-GHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp CEEEEEECSSSEEEEEETT-SCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEEEEeCCcEEEEEECC-CCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEE
Confidence 4777777765677777764 4433 77777664 4778899999876544444455543
No 63
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=50.80 E-value=44 Score=25.82 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=38.1
Q ss_pred cCCCCCeEEEEe-cCccCceEEEEEeeCCCceEEEEecCCCCCCceeeecccccccc
Q psy15371 337 IPNLGRQVLILC-GKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICK 392 (393)
Q Consensus 337 IP~~G~~V~VV~-G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddicK 392 (393)
.|.+|+.++... ..-.--.|++++++.+...+.|...+ -|. .+.+++.+|..
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiD---YGN-~e~V~~~~Lr~ 61 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTD---YGN-YEEVLLSNIKP 61 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETT---TTE-EEEEEGGGEEE
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEc---CCC-eEEEcHHHeEe
Confidence 479999999885 34456789999998866777888765 344 45688888754
No 64
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=55.75 E-value=3.4 Score=23.85 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.0
Q ss_pred eeecchhhhccCcCccccccCC
Q psy15371 26 WYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~~S 47 (393)
+-|..|.|.|.....+.-|..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~ 24 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSLIAHVRQ 24 (29)
Confidence 5799999999999999888653
No 65
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=50.09 E-value=37 Score=25.13 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=36.4
Q ss_pred cCceEEEEeeccCCcc-cccceeEEEEecC-CceEEEEEcCCCcEEEeecCceeee
Q psy15371 283 HKNIIVKIVTKNLGEK-FYKKKGTVEKVID-KYAAIVSLLDSKHKIKLDQEHLETV 336 (393)
Q Consensus 283 ~~~IvVKIidK~l~dg-yYkkKGvV~dV~d-~~~c~V~l~d~g~~l~VdQ~~LETV 336 (393)
.+|-.+... --.|+ ||. |+|.+|.+ ...|.|...|-|..-.|+-+.|-++
T Consensus 10 ~vGd~c~A~--~s~Dg~wYr--A~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 10 KVGDKCMAV--WSEDGQCYE--AEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 61 (64)
T ss_dssp CTTCEEEEE--CTTTSSEEE--EEEEEEETTTTEEEEEETTTTEEEEEEGGGEECC
T ss_pred CCCCEEEEE--ECCCCCEEE--EEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeC
Confidence 445554443 22456 887 89999976 4799999999999888888888654
No 66
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.95 E-value=44 Score=26.12 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=35.6
Q ss_pred CceEEEEeeccCCcccccceeEEEEecCCceEEEEEcCCCcEEEeecCce
Q psy15371 284 KNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHL 333 (393)
Q Consensus 284 ~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~L 333 (393)
.+=.|+|..= .|=+-.|+|+++.+ ..|.|+|-....+|.|+-++|
T Consensus 20 iGktV~I~kG----pyKG~~GiVkd~t~-~~~RVELhs~~K~VtV~r~~l 64 (71)
T 2e70_A 20 IGQTVRISQG----PYKGYIGVVKDATE-STARVELHSTCQTISVDRQRL 64 (71)
T ss_dssp TTSEEEECSS----TTTTCEEEEEEECS-SCEEEEESSSCCEEEECTTTE
T ss_pred CCCEEEEecc----CCCCeEEEEEECCC-CeEEEEecCCceEEEEEhhhc
Confidence 3667888632 26667899999985 689999987778899999998
No 67
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=46.92 E-value=53 Score=25.94 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=32.1
Q ss_pred CCCCeEEEEecC--ccCceEEEEEeeCC---CceEEEEecCCCC
Q psy15371 339 NLGRQVLILCGK--YKGEKAVLKDINID---DCNANVELIDPHY 377 (393)
Q Consensus 339 ~~G~~V~VV~G~--~RG~~G~LisiD~~---k~~a~V~l~~G~~ 377 (393)
+.|++|+|++-+ +-..+|++.++|.+ .+-|+|+++.-.+
T Consensus 2 ~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdkVNY 45 (75)
T 1jb0_E 2 QRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNY 45 (75)
T ss_dssp CTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSSCCS
T ss_pred CCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEeeecc
Confidence 469999999776 47889999999986 7889999886444
No 68
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=46.43 E-value=73 Score=28.75 Aligned_cols=75 Identities=11% Similarity=0.172 Sum_probs=46.7
Q ss_pred HHHHHhhHHHHHHHhhhhhhhcCCCCCCcccCceEEEEeeccCCcc-cccceeEEEEecCCceEEEEEcCCCcEEEeecC
Q psy15371 253 ALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGEK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQE 331 (393)
Q Consensus 253 aldeim~~~ee~kk~~~~~~~~~~r~~~WL~~~IvVKIidK~l~dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~ 331 (393)
.|++||.++.+--.. . .....-+.+|-.+=.. ...|+ ||- |.|.++.+...+.|...|-|....|+.+
T Consensus 44 ~L~~L~~~l~~~~~~-~------~~~~~~~~~G~~c~a~--~~~d~~WyR--a~V~~~~~~~~~~V~~vDyGn~~~v~~~ 112 (226)
T 4b9x_A 44 KLDDLNQSLADYCAQ-K------PPNGFKAEIGRPCCAF--FSGDGNWYR--ALVKEILPSGNVKVHFVDYGNVEEVTTD 112 (226)
T ss_dssp HHHHHHHHHHHHTSS-S------CC--CCCCTTCEEEEE--ETTTTEEEE--EEEEEECSSSEEEEECTTTCCEEEEEGG
T ss_pred HHHHHHHHHHHHHhc-C------CCCCCCCCCCCEEEEE--ECCCCeEEE--EEEEEECCCCeEEEEEEecCCEEEEEHH
Confidence 577777644432211 1 1112223456554332 22455 775 7899998777899999999998888888
Q ss_pred ceeeecC
Q psy15371 332 HLETVIP 338 (393)
Q Consensus 332 ~LETVIP 338 (393)
.|-+..|
T Consensus 113 ~l~~l~~ 119 (226)
T 4b9x_A 113 QLQAILP 119 (226)
T ss_dssp GEECCCG
T ss_pred HhccChH
Confidence 8876554
No 69
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=46.39 E-value=34 Score=24.28 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=29.8
Q ss_pred Ccc-cccceeEEEEecC-CceEEEEEcCCCcEEEeecCceeee
Q psy15371 296 GEK-FYKKKGTVEKVID-KYAAIVSLLDSKHKIKLDQEHLETV 336 (393)
Q Consensus 296 ~dg-yYkkKGvV~dV~d-~~~c~V~l~d~g~~l~VdQ~~LETV 336 (393)
.|+ +|- |+|.+|.. ...+.|...|-|..-.|+.++|-++
T Consensus 14 ~Dg~wYr--A~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 14 EDNKFYR--AEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 54 (54)
T ss_dssp TTTEEEE--EEEEEC--CCSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCCEEE--EEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEEC
Confidence 455 776 89999864 4689999999999888888888653
No 70
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=46.07 E-value=69 Score=24.23 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=38.6
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCceeeecccccccc
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICK 392 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddicK 392 (393)
..|..|++-.-.-+=-.|+++++|....++.|+..+ +... .+.+.||.+
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D----~s~~-W~~~kdi~~ 53 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFED----DSQF-LVLWKDISP 53 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETT----SCEE-EEEGGGEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcC----CCeE-EEEhHHccc
Confidence 578889888766677899999999999999999986 4433 577777754
No 71
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=45.99 E-value=43 Score=26.49 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=40.5
Q ss_pred ceeEEEEecCCceEEEEEcCCCcEE--EeecCcee-eecCCCCCeEEEEecCccCceEEEEE
Q psy15371 302 KKGTVEKVIDKYAAIVSLLDSKHKI--KLDQEHLE-TVIPNLGRQVLILCGKYKGEKAVLKD 360 (393)
Q Consensus 302 kKGvV~dV~d~~~c~V~l~d~g~~l--~VdQ~~LE-TVIP~~G~~V~VV~G~~RG~~G~Lis 360 (393)
-.|+|......+...|.+. +|..+ .+.-..-- -+-|.+|+.|.|-.-+|--..|.++-
T Consensus 16 ~~G~Vik~l~n~~f~V~l~-nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~ 76 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELE-NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVY 76 (79)
T ss_dssp EEEEEEEEETTTEEEEEET-TSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEE
Confidence 3588888876678888876 46433 56655554 45589999999987777666666653
No 72
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=45.68 E-value=1e+02 Score=27.85 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=48.1
Q ss_pred CHHHHHhhHHHHHHHhhhhhhhcCC-CCCCcccCceEEEEeeccCCcccccceeEEEEecCCceEEEEEcCCCcEEEeec
Q psy15371 252 TALEQIKLEEEEAKKKRIDQERQNS-GEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQ 330 (393)
Q Consensus 252 saldeim~~~ee~kk~~~~~~~~~~-r~~~WL~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ 330 (393)
..|++||.++.+.-.... +. ....| .+|-.+-..-. ++.||- |.|.+|.+...+.|...|-|....|+.
T Consensus 41 ~~l~~l~~~l~~~~~~~~-----~~~~~~~~-~~G~~c~a~~~--d~~wyR--a~V~~~~~~~~~~V~~vDyGn~~~v~~ 110 (246)
T 2hqx_A 41 TQFQKLMENMRNDIASHP-----PVEGSYAP-RRGEFCIAKFV--DGEWYR--ARVEKVESPAKIHVFYIDYGNREVLPS 110 (246)
T ss_dssp CHHHHHHHHHHHHHHHSC-----CCTTTCCC-CTTCEEEEECT--TSCEEE--EEEEEEEETTEEEEEETTTCCEEEECG
T ss_pred HHHHHHHHHHHHHHhhCC-----CCCCCCCC-CCCCEEEEEcC--CCCEEE--EEEEEEcCCCeEEEEEEeCCCeEEEeH
Confidence 568888875555322211 01 12345 35555434321 233765 899999866799999999999888887
Q ss_pred CceeeecC
Q psy15371 331 EHLETVIP 338 (393)
Q Consensus 331 ~~LETVIP 338 (393)
+.|-++.|
T Consensus 111 ~~lr~l~~ 118 (246)
T 2hqx_A 111 TRLGTLSP 118 (246)
T ss_dssp GGEECCCG
T ss_pred HHhhcCCH
Confidence 77776643
No 73
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=44.88 E-value=2.3 Score=36.09 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=26.3
Q ss_pred cccccHHHHH-HHhccccceEeeccccceEEEeecCCHHHH
Q psy15371 110 TQWETLTEFV-KHLGKSGKCVVDETEKGWFVTYIDRDPETI 149 (393)
Q Consensus 110 T~W~sLt~Fv-k~Lgr~g~~~v~et~kg~~i~~Id~~pe~~ 149 (393)
|.|.||+.|= -.||+.|...+-.++.|.| ||||||..-
T Consensus 26 t~~~TL~~~p~S~L~~~~~~~~~~~~~g~~--FiDRdp~~F 64 (124)
T 1s1g_A 26 TWRTTLERYPDTLLGSTEKEFFFNEDTKEY--FFDRDPEVF 64 (124)
T ss_dssp EEHHHHTTSTTSSTTSSGGGGTBCSSSCSE--EECSCHHHH
T ss_pred EeHHHHhcCCCceecccCCcccccCCCCcE--EEcCChHHH
Confidence 6677777652 3578766654445677887 699999865
No 74
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=44.25 E-value=87 Score=22.58 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=37.6
Q ss_pred CCCCCeEEEEe-cCccCceEEEEEeeCCCceEEEEecCCCCCCceeeecccccccc
Q psy15371 338 PNLGRQVLILC-GKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICK 392 (393)
Q Consensus 338 P~~G~~V~VV~-G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddicK 392 (393)
.++|+.++... +.-.--.|++++++.+...+.|...+ -|. .+.+++.+|..
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~D---YGn-~e~v~~~~Lr~ 55 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTG---YGN-REEQNLSDLLS 55 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETT---TTE-EEEEEGGGCBC
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEc---CCC-EEEEcHHHeeC
Confidence 47899888885 34456789999999877778888776 344 45688888754
No 75
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=42.45 E-value=20 Score=30.89 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=27.4
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCC
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHY 377 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~ 377 (393)
.+|.-|+|..|.|.|..+++++|-..+. |.| +||.
T Consensus 8 evGRVv~i~~G~~aGklavIVdIID~nr-vLV---dGp~ 42 (126)
T 4a18_F 8 QVGRVVYINYGADKGKLAVIVNIINQNR-ILI---DGEH 42 (126)
T ss_dssp ETTEEEEECSSTTTTEEEEEEEEETTTE-EEE---EETT
T ss_pred ecceEEEEccCCccCCEEEEEEEecCCe-EEE---eCCC
Confidence 3688899999999999999999976664 322 4664
No 76
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=42.01 E-value=19 Score=29.21 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=24.3
Q ss_pred CCCCCeEEEEecCccCceEEEEEeeCCCc
Q psy15371 338 PNLGRQVLILCGKYKGEKAVLKDINIDDC 366 (393)
Q Consensus 338 P~~G~~V~VV~G~~RG~~G~LisiD~~k~ 366 (393)
..+|.-|.++.|.|+|..+.++.+-.+++
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~ 32 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIIDDNF 32 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECSSSC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeCCCE
Confidence 36788899999999999999999954444
No 77
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=47.31 E-value=5.6 Score=31.87 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=30.4
Q ss_pred cc-cccceeEEEEecCCceEEEEEcCCCcEEEeecCceeee
Q psy15371 297 EK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETV 336 (393)
Q Consensus 297 dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETV 336 (393)
|+ ||- |.|.+|.+..+|+|...| |..-.|+.++|-++
T Consensus 19 Dg~wY~--A~I~~v~~~~~y~V~F~D-Gn~E~V~~s~LrPl 56 (81)
T 2ldm_A 19 DSRFYP--AKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAF 56 (81)
Confidence 55 876 789999766789999988 88888888888766
No 78
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=40.82 E-value=42 Score=27.19 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=32.5
Q ss_pred cccCceEEEEeeccCCcccccceeEEEEecCCceEEEEEcC--CCcEE-EeecCcee
Q psy15371 281 WLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLD--SKHKI-KLDQEHLE 334 (393)
Q Consensus 281 WL~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d--~g~~l-~VdQ~~LE 334 (393)
.+.+|-+|.+. .+.|.+++++|.+++|.+.+-|--++ ++... .+.+.||.
T Consensus 3 ~v~~GrVv~~~----~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~ 55 (96)
T 2joy_A 3 AIEVGRICVKV----KGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLE 55 (96)
T ss_dssp SSSTTEEEECS----SSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCE
T ss_pred ccccCEEEEEe----ecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEE
Confidence 46778888654 33488999999999887666665443 12222 56666664
No 79
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=40.57 E-value=45 Score=28.33 Aligned_cols=46 Identities=30% Similarity=0.520 Sum_probs=31.6
Q ss_pred CCCCeEEEEe-----cCccCceEEEEEeeCCCceEEEEecCCCCCCceeeecccccc
Q psy15371 339 NLGRQVLILC-----GKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHI 390 (393)
Q Consensus 339 ~~G~~V~VV~-----G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddi 390 (393)
.+|=.|+|+. | |-++.|++.++ .+++.+.|++.+ .|+.+ .++-+++
T Consensus 16 ~~~I~Vrii~k~~~~g-~y~~KgvV~~V-~~~~~c~V~l~~---~g~~v-~v~q~~L 66 (127)
T 2ckk_A 16 QPEIIVKIITKKLGEK-YHKKKAIVKEV-IDKYTAVVKMID---SGDKL-KLDQTHL 66 (127)
T ss_dssp CTTBEEEECCSTTCGG-GTTCEEEEEEE-ETTTEEEEEETT---TCCEE-EEEGGGE
T ss_pred cCCeEEEEEEccCCCc-ccCceEEEEEe-cCCCeEEEEECC---CCCEE-EEchHHc
Confidence 4566777773 4 88999999999 455788888855 35655 4555443
No 80
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=39.77 E-value=82 Score=24.19 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=36.8
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCceeeeccccccc
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHIC 391 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddic 391 (393)
++|++||.-.|.-+=--|++.+|+.+ ...+|...+| . .+.+...+|.
T Consensus 8 ~vGd~vmArW~D~~yYpA~I~si~~~-~~Y~V~F~dG----~-~etvk~~~ik 54 (67)
T 3p8d_A 8 QINEQVLACWSDCRFYPAKVTAVNKD-GTYTVKFYDG----V-VQTVKHIHVK 54 (67)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT-SEEEEEETTS----C-EEEEEGGGEE
T ss_pred ccCCEEEEEcCCCCEeeEEEEEECCC-CeEEEEEeCC----c-eEEEeHHHcc
Confidence 88999999999888899999999988 4578888863 2 3445555553
No 81
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=39.67 E-value=1.7e+02 Score=26.14 Aligned_cols=57 Identities=19% Similarity=0.122 Sum_probs=33.3
Q ss_pred eeEEEEecC-CceEEEEEcC-CCcEEEeec----CceeeecCCCCCeEEEEe-cCccCceEEEEE
Q psy15371 303 KGTVEKVID-KYAAIVSLLD-SKHKIKLDQ----EHLETVIPNLGRQVLILC-GKYKGEKAVLKD 360 (393)
Q Consensus 303 KGvV~dV~d-~~~c~V~l~d-~g~~l~VdQ----~~LETVIP~~G~~V~VV~-G~~RG~~G~Lis 360 (393)
-|+|.+|.+ .++|.|++.+ ...-+.+-+ .+=-+.+|.+|+.|+|+- |... ..|.++.
T Consensus 20 ~G~V~~vd~~~~rvrV~~~~~~t~wl~~~~~~ag~~~~~~~P~vGeqV~v~f~~Gd~-~~gvVlg 83 (211)
T 3qr8_A 20 TGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSRTWWAPSVGEQVLILAVGGEL-DTAFVLP 83 (211)
T ss_dssp EEEEEEEETTTTEEEEEETTEECCCEEECCSCBSSSBCCCCCCTTCEEEEEECCTTT-CCEEEEE
T ss_pred EEEEEEEECCCCEEEEEeCCccceeEEeEcccccCCceEeCCCCCCEEEEEeCCCcc-CccEEEe
Confidence 478888854 5678888753 112233322 223467899999999993 2222 3455554
No 82
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=39.21 E-value=8.4 Score=35.04 Aligned_cols=25 Identities=28% Similarity=0.732 Sum_probs=17.2
Q ss_pred ccccceeeeecchhhhccCcCccccc
Q psy15371 19 KGLQKLRWYCQMCQKQCRDENGFKCH 44 (393)
Q Consensus 19 kGLqkLrwyCQ~CqKQCRDeNGFKcH 44 (393)
-.+.+|||||.-|.-. --|--|.|.
T Consensus 118 ~~~D~~~wyc~~c~~~-~~e~~f~~~ 142 (176)
T 1zvf_A 118 GENDKIRWYCSHCRQV-VHESELQML 142 (176)
T ss_dssp SSCCEEEEECTTTCCE-EEEEECCSS
T ss_pred CCccceEEEcCCCCCE-EEEEEEEEe
Confidence 4578999999998653 334456664
No 83
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=38.21 E-value=78 Score=24.62 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=36.2
Q ss_pred ecCCCCCeEEEEe-cCccCceEEEEEeeCCCceEEEEecCCCCCCceeeecccccccc
Q psy15371 336 VIPNLGRQVLILC-GKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICK 392 (393)
Q Consensus 336 VIP~~G~~V~VV~-G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddicK 392 (393)
..|.+|+.+.+.. ....--.|+++++..+ ..+.|.+.+ -|. ...++..+|..
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~-~~~~V~fvD---yGn-~e~v~~~~lr~ 78 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVD---FGD-NGDCPLKDLRA 78 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETT---TCC-EEEECGGGCEE
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEc---CCC-eEEEEHHHhhh
Confidence 4689999998874 4556678888999754 456677665 354 34688887754
No 84
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=38.13 E-value=1e+02 Score=21.73 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=33.7
Q ss_pred CCCCeEEEEe-cCccCceEEEEEeeCCCceEEEEecCCCCCCceeeecccccccc
Q psy15371 339 NLGRQVLILC-GKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICK 392 (393)
Q Consensus 339 ~~G~~V~VV~-G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddicK 392 (393)
++|+.++... ..-.--.|++++++.+...+.|...+ -|. .+.+++.+|.-
T Consensus 3 k~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvD---YGn-~e~v~~~~lrp 53 (54)
T 3s6w_A 3 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFID---YGN-YEEVLLSNIKP 53 (54)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETT---TCC-EEEEEGGGEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEc---cCC-eEEEeHHHEEE
Confidence 4678888775 33455679999998877777787765 344 45688888753
No 85
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=37.84 E-value=4.7 Score=22.92 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=17.2
Q ss_pred eeecchhhhccCcCccccccC
Q psy15371 26 WYCQMCQKQCRDENGFKCHTS 46 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~~ 46 (393)
+-|..|.+.|.....+..|..
T Consensus 4 ~~C~~C~~~f~~~~~l~~H~~ 24 (30)
T 2m0d_A 4 YQCDYCGRSFSDPTSKMRHLE 24 (30)
T ss_dssp EECTTTCCEESCHHHHHHHHH
T ss_pred ccCCCCCcccCCHHHHHHHHH
Confidence 679999999998888877753
No 86
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=37.26 E-value=4.6 Score=23.03 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=18.4
Q ss_pred eeecchhhhccCcCccccccCC
Q psy15371 26 WYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~~S 47 (393)
+-|..|.+.|.....+.-|..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~ 24 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTLHILL 24 (29)
T ss_dssp EECSSSSCEESCSHHHHHHHTG
T ss_pred ccCCCCCchhCCHHHHHHHHHH
Confidence 5699999999999888888653
No 87
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=37.15 E-value=9.1 Score=34.74 Aligned_cols=25 Identities=20% Similarity=0.551 Sum_probs=16.5
Q ss_pred ccccceeeeecchhhhccCcCccccc
Q psy15371 19 KGLQKLRWYCQMCQKQCRDENGFKCH 44 (393)
Q Consensus 19 kGLqkLrwyCQ~CqKQCRDeNGFKcH 44 (393)
-.+.+|||||.-|.-. --|--|.|.
T Consensus 116 ~~~d~~~wyc~~c~~~-~~e~~f~~~ 140 (174)
T 1yfu_A 116 GMLDGFEWYCDACGHL-VHRVEVQLK 140 (174)
T ss_dssp TCCEEEEEECTTTCCE-EEEEEECCS
T ss_pred CCccceEEEcCCCCCE-EEEEEEEEe
Confidence 4578999999998652 223345553
No 88
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=35.75 E-value=1.1e+02 Score=23.70 Aligned_cols=49 Identities=18% Similarity=0.056 Sum_probs=38.0
Q ss_pred CCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCceeeeccccccc
Q psy15371 338 PNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHIC 391 (393)
Q Consensus 338 P~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddic 391 (393)
-..|+.|+...-.-+--.|++.+||...+++.|+..+ +. ...+.+-||-
T Consensus 14 f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D----~s-~~w~~~kdi~ 62 (66)
T 2eqj_A 14 FEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFED----SS-KSWVLWKDIQ 62 (66)
T ss_dssp SCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETT----TE-EEEEETTTEE
T ss_pred ccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEcc----CC-EEEEEeeccc
Confidence 3789999888766677899999999999999999986 33 3346666653
No 89
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=35.51 E-value=4.1 Score=22.91 Aligned_cols=21 Identities=14% Similarity=0.629 Sum_probs=17.4
Q ss_pred eeecchhhhccCcCccccccC
Q psy15371 26 WYCQMCQKQCRDENGFKCHTS 46 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~~ 46 (393)
+-|..|.|.|.....++-|..
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~ 22 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQR 22 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGG
T ss_pred ccCCCCCCcCCCHHHHHHHHH
Confidence 569999999999888887754
No 90
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=35.20 E-value=1.2e+02 Score=23.56 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=39.9
Q ss_pred CcccCceEEEEeeccCCcccccceeEEEEecCCceEEEEEcCCCcEEEeecCcee
Q psy15371 280 SWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLE 334 (393)
Q Consensus 280 ~WL~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LE 334 (393)
.-+.+|=-|||++ ..|-+..|.|..|.+ ..+++..+-+..-+.|-..+|.
T Consensus 16 K~F~~GDHVkVi~----G~~~getGlVV~v~~-d~v~v~SD~t~~Ei~V~~~dL~ 65 (69)
T 2do3_A 16 KYFKMGDHVKVIA----GRFEGDTGLIVRVEE-NFVILFSDLTMHELKVLPRDLQ 65 (69)
T ss_dssp SSCCTTCEEEESS----STTTTCEEEEEEECS-SCEEEEESSSCSEEEECTTSEE
T ss_pred eeccCCCeEEEec----cEEcCceEEEEEEeC-CEEEEEeCCCCCEEEEEhHHhh
Confidence 4567888999984 248899999999985 5777777777888888888875
No 91
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.12 E-value=5.8 Score=22.76 Aligned_cols=21 Identities=19% Similarity=0.717 Sum_probs=17.6
Q ss_pred eeecchhhhccCcCccccccC
Q psy15371 26 WYCQMCQKQCRDENGFKCHTS 46 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~~ 46 (393)
+-|..|.|.|.....++-|..
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvg_A 4 YRCPLCRAGCPSLASMQAHMR 24 (27)
T ss_dssp EEETTTTEEESCHHHHHHHHT
T ss_pred cCCCCCCcccCCHHHHHHHHH
Confidence 679999999998888877754
No 92
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.56 E-value=50 Score=26.64 Aligned_cols=57 Identities=11% Similarity=0.257 Sum_probs=43.3
Q ss_pred CCCcccCceEEEEeeccCCcccccceeEEEEecCCceEEEEEcCCCcEEEeecCceeeecC
Q psy15371 278 EESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIP 338 (393)
Q Consensus 278 ~~~WL~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETVIP 338 (393)
+-.| ..|-.|-+.-. .++.+|- |.|..|.+...+.|.+.|-|.+..|+.+.|-+.-|
T Consensus 19 ~~~~-k~g~~vaak~~-d~n~WyR--akV~~v~~~~~veVl~~DyGn~~~V~~~~LR~L~~ 75 (85)
T 2eqk_A 19 PVKW-ENDMHCAVKIQ-DKNQWRR--GQIIRMVTDTLVEVLLYDVGVELVVNVDCLRKLEE 75 (85)
T ss_dssp CCCC-CSSCEEEEECS-SSCCEEE--EEEEEECSSSEEEEECTTTCCEEEEETTTEEECCH
T ss_pred ccCc-cCCCEEEEEeC-CCCeEEE--EEEEEecCCCeEEEEEEccCCEEEEEccccccCCH
Confidence 5566 55666555422 2224665 88999998888999999999999999999998766
No 93
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=34.44 E-value=76 Score=24.50 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=32.4
Q ss_pred Ccc-cccceeEEEEecC-CceEEEEEcCCCcEEEeecCceeeecC
Q psy15371 296 GEK-FYKKKGTVEKVID-KYAAIVSLLDSKHKIKLDQEHLETVIP 338 (393)
Q Consensus 296 ~dg-yYkkKGvV~dV~d-~~~c~V~l~d~g~~l~VdQ~~LETVIP 338 (393)
.|+ +|- |+|.+|.. ...|.|...|=|..-.|+.++|-++-+
T Consensus 30 ~Dg~wYR--A~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 30 EDNKFYR--AEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQT 72 (77)
T ss_dssp TTTEEEE--EEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC--
T ss_pred CCCCEEE--EEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECCh
Confidence 455 776 89999965 468999999999988999999987654
No 94
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=34.01 E-value=61 Score=28.30 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=25.6
Q ss_pred cccCceEEEEeeccCCcccccceeEEEEecCCceEEE
Q psy15371 281 WLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIV 317 (393)
Q Consensus 281 WL~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V 317 (393)
.+.+|=+|.|. .+.|.+++++|++|+|.+.+-|
T Consensus 14 fve~GrVV~i~----~Gr~aGk~avIV~iiD~~rVLV 46 (138)
T 3izc_N 14 LVEVGRVVLIK----KGQSAGKLAAIVEIIDQKKVLI 46 (138)
T ss_dssp CSSTTEEEECC----SCSSSCCEEEEEEECSSSEEEE
T ss_pred hcccCeEEEEe----eCCCCCCEEEEEEEecCCEEEE
Confidence 56778788653 3339999999999999877777
No 95
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.99 E-value=7.4 Score=21.84 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=16.8
Q ss_pred eeecchhhhccCcCcccccc
Q psy15371 26 WYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~ 45 (393)
|-|..|.+.|.....+.-|.
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~ 22 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLKAHL 22 (29)
T ss_dssp CCCSSCCCCCCTTTHHHHHH
T ss_pred CcCCCCCcccCCHHHHHHHH
Confidence 56999999999888887775
No 96
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=33.24 E-value=5.9 Score=22.47 Aligned_cols=20 Identities=20% Similarity=0.632 Sum_probs=16.7
Q ss_pred eeecchhhhccCcCcccccc
Q psy15371 26 WYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~ 45 (393)
|-|..|.+.+.....++-|.
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~ 22 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKRHY 22 (29)
T ss_dssp CBCTTTCCBCSSHHHHHHHH
T ss_pred eECCCCCcccCCHHHHHHHH
Confidence 67999999998888777774
No 97
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.73 E-value=6.1 Score=22.45 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=17.1
Q ss_pred eeecchhhhccCcCccccccC
Q psy15371 26 WYCQMCQKQCRDENGFKCHTS 46 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~~ 46 (393)
+-|..|.|.|.....+.-|..
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (28)
T 2kvf_A 4 YSCSVCGKRFSLKHQMETHYR 24 (28)
T ss_dssp EECSSSCCEESCHHHHHHHHT
T ss_pred ccCCCCCcccCCHHHHHHHHH
Confidence 569999999998887777754
No 98
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=32.69 E-value=1.4e+02 Score=26.05 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=46.3
Q ss_pred eEEEEecCCceEEEEEcCCCcE-E-EeecCceeeecCCCCCeEEEEecCccCceEEEEEee
Q psy15371 304 GTVEKVIDKYAAIVSLLDSKHK-I-KLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDIN 362 (393)
Q Consensus 304 GvV~dV~d~~~c~V~l~d~g~~-l-~VdQ~~LETVIP~~G~~V~VV~G~~RG~~G~LisiD 362 (393)
|+|..+.+.+.+.|.+.+ |.. | .|+..+=-.|-=..|+.|+|-.-+|--..|.++-+-
T Consensus 35 g~V~e~lgn~~f~V~l~n-G~~~La~I~GKmRk~IwI~~GD~VlVe~~~yd~~KG~Ii~r~ 94 (143)
T 1d7q_A 35 AQVIKMLGNGRLEAMCFD-GVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKY 94 (143)
T ss_dssp EEEEEECSSSEEEEEETT-TEEEEEECCSGGGGSCCCCTTCEEEEECSSSSSSCCEEEEEE
T ss_pred EEEEEEcCCCEEEEEeCC-CCEEEEEecccceeeEEecCCCEEEEeeccCCCCeEEEEEEe
Confidence 688888888899999874 554 4 788777776666899999999888877778888774
No 99
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=32.28 E-value=5.9 Score=26.56 Aligned_cols=22 Identities=23% Similarity=0.733 Sum_probs=18.3
Q ss_pred eeeecchhhhccCcCccccccC
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTS 46 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~ 46 (393)
.|-|.+|.|.|.....++-|..
T Consensus 7 p~~C~~C~k~F~~~~~L~~H~~ 28 (48)
T 3iuf_A 7 PYACDICGKRYKNRPGLSYHYA 28 (48)
T ss_dssp CEECTTTCCEESSHHHHHHHHH
T ss_pred CEECCCcCcccCCHHHHHHHhh
Confidence 3779999999999888887754
No 100
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.79 E-value=6.8 Score=22.08 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=16.4
Q ss_pred eeecchhhhccCcCcccccc
Q psy15371 26 WYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~ 45 (393)
|-|..|.+.+.....+..|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~ 22 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKRHL 22 (29)
T ss_dssp EECTTTSCEESCHHHHHHHH
T ss_pred ccCCCCCCccCChhHHHHHH
Confidence 57999999998887777764
No 101
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.56 E-value=6.5 Score=23.94 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=18.8
Q ss_pred eeeecchhhhccCcCccccccCC
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~S 47 (393)
.+-|..|.+.|.....++-|..+
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~~ 31 (36)
T 2elv_A 9 LYDCHICERKFKNELDRDRHMLV 31 (36)
T ss_dssp CEECSSSCCEESSHHHHHHHHTT
T ss_pred CeECCCCCCccCCHHHHHHHHHH
Confidence 47799999999988888877653
No 102
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=31.36 E-value=87 Score=28.97 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=39.3
Q ss_pred EeeccCCcccccceeEEEEecCCceEEEEEcCCCcEEEeecCceeeecC
Q psy15371 290 IVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIP 338 (393)
Q Consensus 290 IidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETVIP 338 (393)
|-++.++.-.-+..|||+.|.++ .+.|....-.+..+|+-+.||++=-
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (200)
T 3gox_A 19 IAKNQLGNIVPNSVGVIRAVNGK-SAMVLFIGLNELKRVDFSELEAIDI 66 (200)
T ss_dssp EESSCBTTBCTTBEEEEEEEETT-EEEEEETTTTEEEEEEGGGEEECCG
T ss_pred EeccccccccccceeeEEecCCc-eEEEEEEehhHhhhcchhhcceeee
Confidence 66677776688899999998765 6777777788899999999999853
No 103
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=30.63 E-value=17 Score=24.21 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=18.0
Q ss_pred cceeeeecchhh----hccCcCccccccC
Q psy15371 22 QKLRWYCQMCQK----QCRDENGFKCHTS 46 (393)
Q Consensus 22 qkLrwyCQ~CqK----QCRDeNGFKcH~~ 46 (393)
+.|++||+.|+. .|.....-+-|..
T Consensus 11 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 39 (42)
T 1fre_A 11 ERLKLYCKDDGTLSCVICRDSLKHASHNF 39 (42)
T ss_dssp SSCCCCCCSSSSSSCCTTSSCSSCTTCCC
T ss_pred CeeeEEeCCCCeEEeccCCCCCCCCCCcE
Confidence 689999999884 6776555555543
No 104
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E* 2wsf_E* 2o01_E* 3lw5_E*
Probab=30.21 E-value=8.9 Score=33.42 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=39.9
Q ss_pred eeecCCCCCeEEEEecC--ccCceEEEEEeeCC---CceEEEEecCCCCCCceeeecccccc
Q psy15371 334 ETVIPNLGRQVLILCGK--YKGEKAVLKDINID---DCNANVELIDPHYDNKVVRNIDYSHI 390 (393)
Q Consensus 334 ETVIP~~G~~V~VV~G~--~RG~~G~LisiD~~---k~~a~V~l~~G~~~g~~v~~l~yddi 390 (393)
.+|=|+.|.+|+|++-+ +-..+|++.+||.+ ++-|+|+++.-.+.|-.--++..|.|
T Consensus 77 p~igp~RGskVrIlR~ESYWyn~vGtVvsVDqs~girYPVvVRF~KVNYaGvnTNNfA~dEl 138 (143)
T 2wsc_E 77 PPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEV 138 (143)
T ss_dssp --CCSCSSSCBCCCSSSSTTTTSCBBCCCCCCSSCCSCCCBCBCSCCCSSSCCCCBCCSSCC
T ss_pred CCCCCCCCCEeEEccccceeecCcceEEEEecCCCccccEEEEeeeecccccccccccHHHH
Confidence 45668999999999776 46789999999986 78888888865554432223444443
No 105
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=29.97 E-value=32 Score=33.31 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=32.2
Q ss_pred CCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecC
Q psy15371 338 PNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELID 374 (393)
Q Consensus 338 P~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~ 374 (393)
.=+|...+|+.|+-+|.+|.++.....-.-+.|.++.
T Consensus 84 sCiGN~A~VvSG~AKG~~G~VtGkHGGieHVlV~F~~ 120 (284)
T 3dcl_A 84 SCIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVHFEE 120 (284)
T ss_dssp CCBTCEEEECSSTTTTCEEEEEEEETTTTEEEEECCH
T ss_pred eecCceeEEeecccCCCcceEecccCCeeeEEEECCH
Confidence 3579999999999999999999999887777777664
No 106
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.80 E-value=7.5 Score=23.71 Aligned_cols=21 Identities=14% Similarity=0.480 Sum_probs=17.4
Q ss_pred eeeecchhhhccCcCcccccc
Q psy15371 25 RWYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~ 45 (393)
.|-|..|.|.|.....+.-|.
T Consensus 11 ~~~C~~C~k~f~~~~~l~~H~ 31 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSDHLALHR 31 (37)
T ss_dssp SBCCTTTCCCBSSHHHHHHHH
T ss_pred CccCCCCCcccCcHHHHHHHH
Confidence 478999999999887777764
No 107
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=29.38 E-value=7.6 Score=23.38 Aligned_cols=22 Identities=14% Similarity=0.434 Sum_probs=18.2
Q ss_pred eeeecchhhhccCcCccccccC
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTS 46 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~ 46 (393)
.|-|..|.+.|.....++-|..
T Consensus 7 ~~~C~~C~k~f~~~~~l~~H~~ 28 (35)
T 1srk_A 7 PFVCRICLSAFTTKANCARHLK 28 (35)
T ss_dssp CEECSSSCCEESSHHHHHHHHG
T ss_pred CeeCCCCCcccCCHHHHHHHHH
Confidence 3779999999998888887753
No 108
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.35 E-value=7.5 Score=22.00 Aligned_cols=20 Identities=25% Similarity=0.685 Sum_probs=16.5
Q ss_pred eeecchhhhccCcCcccccc
Q psy15371 26 WYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~ 45 (393)
|-|..|.|.++....++-|.
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~ 23 (27)
T 2kvh_A 4 FSCSLCPQRSRDFSAMTKHL 23 (27)
T ss_dssp EECSSSSCEESSHHHHHHHH
T ss_pred ccCCCcChhhCCHHHHHHHH
Confidence 67999999999887777664
No 109
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=29.18 E-value=65 Score=25.71 Aligned_cols=41 Identities=20% Similarity=0.457 Sum_probs=0.0
Q ss_pred CCCCcccCceEEEEeeccCCcc-cccceeEEEEecC-CceEEEEEcCCCc
Q psy15371 277 GEESWLHKNIIVKIVTKNLGEK-FYKKKGTVEKVID-KYAAIVSLLDSKH 324 (393)
Q Consensus 277 r~~~WL~~~IvVKIidK~l~dg-yYkkKGvV~dV~d-~~~c~V~l~d~g~ 324 (393)
+..+|+..+..+| -.|| ||- |.|+.|.. +..|.|...|...
T Consensus 24 ~~~f~eGeDVLar-----wsDGlfYL--GTI~kV~~~~e~ClV~F~D~S~ 66 (79)
T 2m0o_A 24 RPRLWEGQDVLAR-----WTDGLLYL--GTIKKVDSAREVCLVQFEDDSQ 66 (79)
T ss_dssp CCCCCTTCEEEBC-----CTTSCCCE--EEEEEEETTTTEEEEEETTSCE
T ss_pred cceeccCCEEEEE-----ecCCCEEe--EEEEEeccCCCEEEEEEcCCCe
No 110
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.53 E-value=11 Score=21.58 Aligned_cols=19 Identities=16% Similarity=0.536 Sum_probs=16.8
Q ss_pred eeecchhhhccCcCccccc
Q psy15371 26 WYCQMCQKQCRDENGFKCH 44 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH 44 (393)
+-|..|.+.|.....+.-|
T Consensus 3 ~~C~~C~k~f~~~~~l~~H 21 (30)
T 1paa_A 3 YACGLCNRAFTRRDLLIRH 21 (30)
T ss_dssp SBCTTTCCBCSSSHHHHHH
T ss_pred cCCcccCcccCChHHHHHH
Confidence 5699999999999888888
No 111
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=28.49 E-value=19 Score=33.93 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.6
Q ss_pred eecccccccHHHHHHHhccc
Q psy15371 106 HMNATQWETLTEFVKHLGKS 125 (393)
Q Consensus 106 HMNaT~W~sLt~Fvk~Lgr~ 125 (393)
|||+.-..+|..|++++|.-
T Consensus 8 HMN~DH~dal~~y~~~~~~~ 27 (259)
T 3gas_A 8 HMNAHHVEDMKGLLKKFGQV 27 (259)
T ss_dssp HHHHHCHHHHHHHHHHHHCC
T ss_pred HHHHhhHHHHHHHHHHhCCC
Confidence 99999999999999999854
No 112
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.35 E-value=2.3e+02 Score=23.53 Aligned_cols=59 Identities=8% Similarity=-0.045 Sum_probs=38.9
Q ss_pred eeEEEEecCCceEEEEEcCCCcEE-EeecCceeeecCCCCCeEEEEecCcc-CceEEEEEe
Q psy15371 303 KGTVEKVIDKYAAIVSLLDSKHKI-KLDQEHLETVIPNLGRQVLILCGKYK-GEKAVLKDI 361 (393)
Q Consensus 303 KGvV~dV~d~~~c~V~l~d~g~~l-~VdQ~~LETVIP~~G~~V~VV~G~~R-G~~G~Lisi 361 (393)
-|+|....+.+...|.+.+.-.++ .|+..+=-.|-=..|+.|+|-.-+|- -..|.++-+
T Consensus 18 ~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r 78 (111)
T 2dgy_A 18 IVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFV 78 (111)
T ss_dssp EEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEEE
Confidence 478888888888999887533344 67766665555577888888766654 334444443
No 113
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.02 E-value=35 Score=27.42 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.9
Q ss_pred HHHHHhccccceEeeccccceEEEe
Q psy15371 117 EFVKHLGKSGKCVVDETEKGWFVTY 141 (393)
Q Consensus 117 ~Fvk~Lgr~g~~~v~et~kg~~i~~ 141 (393)
--+=||.|+|++.+++.+.-|||..
T Consensus 41 lAIGWLaREdKI~~~~~~~~l~v~L 65 (82)
T 2l02_A 41 LAVGWLARENKVVIERKNGLIEIYN 65 (82)
T ss_dssp HHHHHHHTTTSEEEEEETTEEEEEE
T ss_pred HHHHHHhccCceeEEeeCCEEEEEE
Confidence 3478999999999999988899974
No 114
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=27.90 E-value=18 Score=25.00 Aligned_cols=12 Identities=25% Similarity=0.883 Sum_probs=10.3
Q ss_pred cceeeeecchhh
Q psy15371 22 QKLRWYCQMCQK 33 (393)
Q Consensus 22 qkLrwyCQ~CqK 33 (393)
++|++||+.|+.
T Consensus 15 e~l~lfC~~~~~ 26 (50)
T 2yvr_A 15 EPLVLFCESCDT 26 (50)
T ss_dssp CBCCEEETTTTE
T ss_pred CCEEEEeCCCCE
Confidence 689999999983
No 115
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=27.86 E-value=78 Score=27.76 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCcEEEeecCceeeecCCCCCeEEEEe----cCccCceEEEEEeeCCCceEEEEecCCCCCCceeeeccc
Q psy15371 312 KYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILC----GKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDY 387 (393)
Q Consensus 312 ~~~c~V~l~d~g~~l~VdQ~~LETVIP~~G~~V~VV~----G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~y 387 (393)
.|+-.|..+.-++-|.-+.++ .-..|..|.|-. ..-+-..|+|.++|.+.. ++.+... ..+..+ .+||
T Consensus 79 ~Y~LEVSSPGldRpL~~~~df----~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~v--~l~~~~k-~~~~~~-~i~~ 150 (164)
T 1ib8_A 79 QYFLEITSPGLERPLKTKDAV----AGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDEL--TMEYMDK-TRKKTV-QIPY 150 (164)
T ss_dssp CEEEEEECCSSSSCCSSHHHH----HHHCSEEEEEECSSCSSSCSEEEEEEEEEETTEE--EEEEECS-SCEEEE-EECS
T ss_pred CeEEEEeCCCCCCCCCCHHHH----HHhCCcEEEEEEecccCCceEEEEEEEEEeCCEE--EEEEecc-cCCeEE-EEEH
Confidence 344444444444444333222 123477777653 223446899999997764 4444421 123334 5999
Q ss_pred ccccc
Q psy15371 388 SHICK 392 (393)
Q Consensus 388 ddicK 392 (393)
++|.+
T Consensus 151 ~~I~k 155 (164)
T 1ib8_A 151 SLVSK 155 (164)
T ss_dssp SCCSS
T ss_pred HHCcE
Confidence 99975
No 116
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str}
Probab=27.75 E-value=2.4e+02 Score=22.69 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=37.8
Q ss_pred cccceeEEEEecC-CceEEEEEcCCCcEEEeecCceeeecCCCCCeEEEEecCccCceEEEEEee
Q psy15371 299 FYKKKGTVEKVID-KYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDIN 362 (393)
Q Consensus 299 yYkkKGvV~dV~d-~~~c~V~l~d~g~~l~VdQ~~LETVIP~~G~~V~VV~G~~RG~~G~LisiD 362 (393)
+.++.|+|.+-++ ...+.|++. |..-.+.. ...| ..|.+|.|+. ..|.+-.+..++
T Consensus 40 lIG~~g~V~~~i~~~g~G~V~i~--Ge~W~A~s---~~~i-~~G~~V~Vv~--veG~~LiV~~~~ 96 (101)
T 2k5h_A 40 LIGRKGVVMEAISPQNSGLVKVD--GETWRATS---GTVL-DVGEEVSVKA--IEGVKLVVEKLE 96 (101)
T ss_dssp GTTSEEEEEECBCSSSCEEEEET--TEEEEEEC---SSCB-CTTCEEEEEE--ECSSSEEEEECC
T ss_pred cCCCEEEEeEEccCCCeEEEEEC--CEEEEEEe---CCcC-CCCCEEEEEE--EECCEEEEEECC
Confidence 8899999998776 557888885 66555533 2223 5689999885 456666555543
No 117
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=27.72 E-value=24 Score=30.72 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=51.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhcC---cceeeccchhhhhhcCCCceeecccccccHHHHHHHhccc
Q psy15371 60 NADQYLDEFSREFEEGYLELLRRQFS---TRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKS 125 (393)
Q Consensus 60 n~~~~i~~~S~~F~~~Fl~lLr~~~g---~krv~aN~vY~eyI~dr~HvHMNaT~W~sLt~Fvk~Lgr~ 125 (393)
.+..|++.|+..|+..+.+.|++=-+ -.-+.+|-+=+-|-.+|=+|+|+.+.+.-|..|++-=+..
T Consensus 54 ~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~ 122 (148)
T 2j49_A 54 YARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESI 122 (148)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCcc
Confidence 34678999998888777666665444 3557789999999999999999999999998887654433
No 118
>3s9x_A ASCH domain; MCSG, PSI-2, structural genomics, midwest center for structu genomics, unknown function; 1.35A {Vibrio cholerae tma 21}
Probab=27.27 E-value=58 Score=29.01 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=25.4
Q ss_pred ecCCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCceeeeccccccc
Q psy15371 336 VIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHIC 391 (393)
Q Consensus 336 VIP~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddic 391 (393)
-+|++|+.-+|++|.- .-.++|++.. |..+||.+|.
T Consensus 72 ~lP~vG~~~IvlD~~g-------------~PvciI~tt~-------V~~~pf~~Vt 107 (159)
T 3s9x_A 72 LMPQVGHLQVVTNWDG-------------KPICIIEITS-------VSKCQYNQVS 107 (159)
T ss_dssp CCCCTTCEEEEECTTC-------------CEEEEEEEEE-------EEEEEGGGCC
T ss_pred CCCCcCCEEEEECCCC-------------CEEEEEEEEE-------EEEEEcccCC
Confidence 5899999999999843 2334555543 6668888875
No 119
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=27.15 E-value=1.2e+02 Score=23.73 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=28.4
Q ss_pred eEEEEecCCceEEEEEcCCCcEEEeecCceeeecCCCCCeEEEEec
Q psy15371 304 GTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCG 349 (393)
Q Consensus 304 GvV~dV~d~~~c~V~l~d~g~~l~VdQ~~LETVIP~~G~~V~VV~G 349 (393)
|.|.++ +...+.|.. .|..-.|+-..++.+ ++|+.|+|=.|
T Consensus 7 ~kVvei-~~~~A~vd~--~Gv~r~V~l~Lv~~~--~vGD~VLVH~G 47 (75)
T 2z1c_A 7 GKVIEV-NGPVAVVDF--GGVKREVRLDLMPDT--KPGDWVIVHTG 47 (75)
T ss_dssp EEEEEE-ETTEEEEEE--TTEEEEEECTTSTTC--CTTCEEEEETT
T ss_pred EEEEEE-CCCEEEEEc--CCEEEEEEEEEeCCC--CCCCEEEEecc
Confidence 456777 456788866 365556776777543 77999999766
No 120
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=26.97 E-value=9.5 Score=21.53 Aligned_cols=20 Identities=30% Similarity=0.727 Sum_probs=16.4
Q ss_pred eeecchhhhccCcCcccccc
Q psy15371 26 WYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~ 45 (393)
+-|..|.+.|.....+.-|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~ 22 (30)
T 1klr_A 3 YQCQYCEFRSADSSNLKTHI 22 (30)
T ss_dssp CCCSSSSCCCSCSHHHHHHH
T ss_pred ccCCCCCCccCCHHHHHHHH
Confidence 56999999998888777774
No 121
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=26.82 E-value=1.4e+02 Score=25.94 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=25.1
Q ss_pred cccCceEEEEeeccCCcccccceeEEEEecCCceEEE
Q psy15371 281 WLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIV 317 (393)
Q Consensus 281 WL~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V 317 (393)
.+.+|=+|.|. .+.|.+++++|++|+|...+.|
T Consensus 6 fvevGRVV~i~----~Gr~aGk~avIV~iiD~~rvLV 38 (134)
T 3iz5_N 6 FVEIGRVALVN----YGKDYGRLVVIVDVVDQNRALV 38 (134)
T ss_dssp SCCSSEEEECS----CCSSSCCEEEEEEECSSSEEEE
T ss_pred ccccCeEEEEe----eCCCCCCEEEEEEEcCCCeEEE
Confidence 45677777653 2339999999999999877776
No 122
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.63 E-value=8.7 Score=23.07 Aligned_cols=22 Identities=18% Similarity=0.522 Sum_probs=18.9
Q ss_pred eeecchhhhccCcCccccccCC
Q psy15371 26 WYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~~S 47 (393)
+-|..|.|.|.....++-|..+
T Consensus 3 ~~C~~C~k~f~~~~~L~~H~~~ 24 (32)
T 2kfq_A 3 FACPACPKRFMRSDALSKHIKT 24 (32)
T ss_dssp SSSSSSCTTHHHHHTTSSSTTS
T ss_pred CCCCCCCcccCCHHHHHHHHHH
Confidence 5699999999999999988754
No 123
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=26.49 E-value=17 Score=35.42 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=15.1
Q ss_pred cccceeeeecchhhhccCcCccccc
Q psy15371 20 GLQKLRWYCQMCQKQCRDENGFKCH 44 (393)
Q Consensus 20 GLqkLrwyCQ~CqKQCRDeNGFKcH 44 (393)
-+.+|||||.-|.-.-+ |--|.|.
T Consensus 112 ~~D~l~wyc~~c~~~~~-e~~f~~~ 135 (286)
T 2qnk_A 112 ELDGLRYYVGDTMDVLF-EKWFYCK 135 (286)
T ss_dssp CCEEEEEESTTSSSEEE-EEEECCS
T ss_pred CccceEEEcCCCCCEEE-EEEEEEe
Confidence 35789999998854322 3345553
No 124
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=26.48 E-value=1.6e+02 Score=23.67 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=37.6
Q ss_pred cCCCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCceeeeccccccc
Q psy15371 337 IPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHIC 391 (393)
Q Consensus 337 IP~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddic 391 (393)
.=++|+.||--.|.-+=--|++.+|+.+ ...+|+..+ |. ...|...+|.
T Consensus 21 ~f~vGd~VlArW~D~~yYPAkI~sV~~~-~~YtV~F~D----G~-~etvk~~~IK 69 (85)
T 3qii_A 21 EFQINEQVLACWSDCRFYPAKVTAVNKD-GTYTVKFYD----GV-VQTVKHIHVK 69 (85)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT-SEEEEEETT----SC-EEEEEGGGEE
T ss_pred ccccCCEEEEEeCCCCEeeEEEEEECCC-CeEEEEEeC----CC-eEEecHHHcc
Confidence 3389999999998888899999999987 467888886 32 3445555553
No 125
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=25.36 E-value=17 Score=29.41 Aligned_cols=39 Identities=31% Similarity=0.344 Sum_probs=22.1
Q ss_pred ccccccHHHHH-HHhccc--c--ceEeeccccceEEEeecCCHHHH
Q psy15371 109 ATQWETLTEFV-KHLGKS--G--KCVVDETEKGWFVTYIDRDPETI 149 (393)
Q Consensus 109 aT~W~sLt~Fv-k~Lgr~--g--~~~v~et~kg~~i~~Id~~pe~~ 149 (393)
.|.|.||+.|= -+|++- + ....+.++.|+| ||||||..-
T Consensus 18 ~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~--fiDRdp~~F 61 (107)
T 3drz_A 18 LTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAY--LIDRDPTYF 61 (107)
T ss_dssp EEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCE--EECSCHHHH
T ss_pred EECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceE--EecCChHHH
Confidence 36777887542 123321 1 111234577887 789999865
No 126
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.14 E-value=10 Score=22.97 Aligned_cols=21 Identities=24% Similarity=0.703 Sum_probs=17.0
Q ss_pred eeeecchhhhccCcCcccccc
Q psy15371 25 RWYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~ 45 (393)
-|-|..|.+.|.....++-|.
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2elq_A 9 PFKCSLCEYATRSKSNLKAHM 29 (36)
T ss_dssp SEECSSSSCEESCHHHHHHHH
T ss_pred CccCCCCCchhCCHHHHHHHH
Confidence 377999999999887777664
No 127
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=24.92 E-value=17 Score=26.20 Aligned_cols=16 Identities=44% Similarity=0.887 Sum_probs=11.8
Q ss_pred eeecchhhhccCcCcccc
Q psy15371 26 WYCQMCQKQCRDENGFKC 43 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKc 43 (393)
-+|+.|+|+-. +||+|
T Consensus 15 t~C~~C~k~i~--~G~kC 30 (49)
T 1kbe_A 15 QVCNVCQKSMI--FGVKC 30 (49)
T ss_dssp CCCSSSCCSSC--CEEEE
T ss_pred cCccccCceeE--CcCCC
Confidence 67999998765 56655
No 128
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=24.86 E-value=12 Score=32.41 Aligned_cols=48 Identities=27% Similarity=0.374 Sum_probs=33.3
Q ss_pred cCCCceeec------ccccccHHHHH-HHhccccceEeeccccceEEEeecCCHHHH
Q psy15371 100 ADREHVHMN------ATQWETLTEFV-KHLGKSGKCVVDETEKGWFVTYIDRDPETI 149 (393)
Q Consensus 100 ~dr~HvHMN------aT~W~sLt~Fv-k~Lgr~g~~~v~et~kg~~i~~Id~~pe~~ 149 (393)
..-+.|++| .|.+.||+.|= -.||+.|...+..++.|.|. |||||..-
T Consensus 32 ~~~~~V~LNVGG~~F~T~~~TL~~~P~S~L~~~~~~~~~~~~~g~yF--iDRdp~~F 86 (140)
T 2nz0_B 32 RQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYF--FDRDPEVF 86 (140)
T ss_dssp TCCCEEEEEETTEEEEEEHHHHHTCTTSTTTSGGGGGSEETTTTEEE--ECSCHHHH
T ss_pred CCCCEEEEEECCEEEEeeHHHHhcCCCeeecccCCcccccCCCCeEE--EeCCcHHH
Confidence 345677777 46777887663 36888776555556778764 89999865
No 129
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.48 E-value=11 Score=22.87 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=16.8
Q ss_pred eeeecchhhhccCcCcccccc
Q psy15371 25 RWYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~ 45 (393)
.|-|..|.|.|.....++-|.
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2els_A 9 IFTCEYCNKVFKFKHSLQAHL 29 (36)
T ss_dssp CEECTTTCCEESSHHHHHHHH
T ss_pred CEECCCCCceeCCHHHHHHHH
Confidence 578999999998877776664
No 130
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=24.45 E-value=22 Score=24.49 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=22.0
Q ss_pred CCCHHHHHHHhhhcc-ccceeeeecchhhhccCcCcccccc
Q psy15371 6 VGTPKYIANKMKAKG-LQKLRWYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 6 ~~t~K~ian~~KakG-LqkLrwyCQ~CqKQCRDeNGFKcH~ 45 (393)
|.+...+...++..- ...-.|-|..|.+.|.....++-|.
T Consensus 20 f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~ 60 (66)
T 2drp_A 20 YTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60 (66)
T ss_dssp ESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHH
Confidence 445555555555421 2334566777777766666655553
No 131
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.88 E-value=10 Score=23.48 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=16.9
Q ss_pred eeeecchhhhccCcCccccc
Q psy15371 25 RWYCQMCQKQCRDENGFKCH 44 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH 44 (393)
.|-|..|.|.|.....++-|
T Consensus 9 ~~~C~~C~k~f~~~~~L~~H 28 (37)
T 2elm_A 9 LYYCSQCHYSSITKNCLKRH 28 (37)
T ss_dssp EEECSSSSCEEECHHHHHHH
T ss_pred CeECCCCCcccCCHHHHHHH
Confidence 37799999999988887776
No 132
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.83 E-value=11 Score=22.44 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=16.7
Q ss_pred eeeecchhhhccCcCcccccc
Q psy15371 25 RWYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~ 45 (393)
.|-|..|.|.|.....++-|.
T Consensus 7 ~~~C~~C~k~f~~~~~L~~H~ 27 (35)
T 2elx_A 7 GYVCALCLKKFVSSIRLRSHI 27 (35)
T ss_dssp SEECSSSCCEESSHHHHHHHH
T ss_pred CeECCCCcchhCCHHHHHHHH
Confidence 378999999988877776664
No 133
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.46 E-value=1.2e+02 Score=24.19 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=35.6
Q ss_pred ecCCCCCeEEEEe-cCccCceEEEEEeeCCCceEEEEecCCCCCCceeeecccccccc
Q psy15371 336 VIPNLGRQVLILC-GKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICK 392 (393)
Q Consensus 336 VIP~~G~~V~VV~-G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~~v~~l~yddicK 392 (393)
..|.+|+.+.+.. ....-..|++++++.+ ..+.|.+.+ -|. ...++..+|..
T Consensus 31 ~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvD---yGn-~e~v~~~~Lr~ 83 (110)
T 2diq_A 31 LTVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVD---FGD-NGDCPLKDLRA 83 (110)
T ss_dssp CCCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETT---TCC-EEEECGGGCEE
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEe---CCC-eEEEehHHhhc
Confidence 3468899888764 3446678899999874 356677665 355 34688888754
No 134
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.35 E-value=11 Score=22.60 Aligned_cols=21 Identities=29% Similarity=0.718 Sum_probs=17.0
Q ss_pred eeeecchhhhccCcCcccccc
Q psy15371 25 RWYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~ 45 (393)
.|-|..|.|.|.....+.-|.
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2elr_A 9 THLCDMCGKKFKSKGTLKSHK 29 (36)
T ss_dssp SCBCTTTCCBCSSHHHHHHHH
T ss_pred CeecCcCCCCcCchHHHHHHH
Confidence 477999999998887777664
No 135
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.09 E-value=14 Score=23.33 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=19.2
Q ss_pred eeeecchhhhccCcCccccccCC
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~S 47 (393)
.|-|..|.|.|.....++-|..+
T Consensus 11 ~~~C~~C~k~f~~~~~L~~H~~~ 33 (42)
T 2eos_A 11 PYPCEICGTRFRHLQTLKSHLRI 33 (42)
T ss_dssp CBCCSSSCCCBSSHHHHHHHTTT
T ss_pred CEECCCCCCccCCHHHHHHHHHh
Confidence 47799999999998888888653
No 136
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=23.00 E-value=21 Score=23.73 Aligned_cols=42 Identities=12% Similarity=0.363 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhhhccccceeeeecchhhhccCcCccccccCC
Q psy15371 5 EVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 5 e~~t~K~ian~~KakGLqkLrwyCQ~CqKQCRDeNGFKcH~~S 47 (393)
-|.++..+...++.-- ..-.|.|..|.+.+.....+.-|..+
T Consensus 10 ~f~~~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~~~l~~H~~~ 51 (57)
T 1bbo_A 10 RXKKPSMLKKHIRTHT-DVRPYHCTYCNFSFKTKGNLTKHMKS 51 (57)
T ss_dssp BCSSHHHHHHHHHHTS-SCCCEECSSSSCEESSHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHhcC-CCCCccCCCCCchhcCHHHHHHHHHH
Confidence 3556666666666532 22347788888888887777766543
No 137
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=22.93 E-value=9 Score=31.30 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=25.0
Q ss_pred ccccccHHHHH-HHhccccceEeeccccceEEEeecCCHHHH
Q psy15371 109 ATQWETLTEFV-KHLGKSGKCVVDETEKGWFVTYIDRDPETI 149 (393)
Q Consensus 109 aT~W~sLt~Fv-k~Lgr~g~~~v~et~kg~~i~~Id~~pe~~ 149 (393)
.|.|.||+.|= -.||+.+...+-.++.|.| ||||||..-
T Consensus 12 ~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~~--FiDRdp~~F 51 (105)
T 1nn7_A 12 QTWQDTLERYPDTLLGSSERDFFYHPETQQY--FFDRDPDIF 51 (105)
T ss_dssp EECHHHHHTSCSSSTTSGGGGGGEEGGGTEE--EECSCTTTH
T ss_pred EEeHHHHhcCCCccccccCCcccccCCCCcE--EEeCCcHHH
Confidence 36677777653 2477765544444567876 489999754
No 138
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=22.89 E-value=1.6e+02 Score=24.93 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=41.3
Q ss_pred cccCceEEEEeeccCCcccccceeEEEEecC-CceEEEEEcCCCc--EEEeecCceeeec
Q psy15371 281 WLHKNIIVKIVTKNLGEKFYKKKGTVEKVID-KYAAIVSLLDSKH--KIKLDQEHLETVI 337 (393)
Q Consensus 281 WL~~~IvVKIidK~l~dgyYkkKGvV~dV~d-~~~c~V~l~d~g~--~l~VdQ~~LETVI 337 (393)
=+.+|=.|+|++- .|-+-.|+|.+|.. +..+.|.+..-|+ -+.|+-+++|.+-
T Consensus 91 ~~~~Gd~VrI~~G----pf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~ 146 (152)
T 3p8b_B 91 GLEPGDLVEVIAG----PFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLIS 146 (152)
T ss_dssp TCCTTCEEEECSS----TTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEE
T ss_pred cCCCCCEEEEeee----cCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEec
Confidence 3567888999842 27788999999965 5688998887777 4689999998763
No 139
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=22.86 E-value=19 Score=36.43 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=28.5
Q ss_pred eeeecchhh------hccCcCccccccCCHHHHHHHHH
Q psy15371 25 RWYCQMCQK------QCRDENGFKCHTSSEAHQRQLLL 56 (393)
Q Consensus 25 rwyCQ~CqK------QCRDeNGFKcH~~SesH~rqm~~ 56 (393)
+++|.+|.+ -+.-+.-..-|+.|-.|.+.+.-
T Consensus 360 ~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~ 397 (409)
T 3eph_A 360 HYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKR 397 (409)
T ss_dssp EEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHH
T ss_pred ceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHH
Confidence 468999998 69999999999999999999863
No 140
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=22.84 E-value=2.1e+02 Score=20.32 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=34.7
Q ss_pred ccCceEEEEeeccCCcccccceeEEEEecC-CceEEEEEcCCCcE--EEeecCceee
Q psy15371 282 LHKNIIVKIVTKNLGEKFYKKKGTVEKVID-KYAAIVSLLDSKHK--IKLDQEHLET 335 (393)
Q Consensus 282 L~~~IvVKIidK~l~dgyYkkKGvV~dV~d-~~~c~V~l~d~g~~--l~VdQ~~LET 335 (393)
+.+|=.|+|++ ..|-+..|.|.+|.. +..+.|.+.--|+. +.++-+++|.
T Consensus 5 ~~~Gd~V~V~~----Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek 57 (58)
T 1nz9_A 5 FREGDQVRVVS----GPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57 (58)
T ss_dssp CCTTCEEEECS----GGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred cCCCCEEEEee----cCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEE
Confidence 45677899974 227788999999965 45777766555654 4777777764
No 141
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.73 E-value=14 Score=22.54 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=17.1
Q ss_pred eeeecchhhhccCc-Ccccccc
Q psy15371 25 RWYCQMCQKQCRDE-NGFKCHT 45 (393)
Q Consensus 25 rwyCQ~CqKQCRDe-NGFKcH~ 45 (393)
.|-|..|.+.|... ..++-|.
T Consensus 9 ~~~C~~C~k~f~~~~~~L~~H~ 30 (37)
T 2elp_A 9 AMKCPYCDFYFMKNGSDLQRHI 30 (37)
T ss_dssp CEECSSSSCEECSSCHHHHHHH
T ss_pred CeECCCCChhhccCHHHHHHHH
Confidence 47899999999887 7777664
No 142
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=22.56 E-value=1.9e+02 Score=24.75 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=31.6
Q ss_pred cccCceEEEEeeccCCcccccceeEEEEecCCceEEEEEcCCCcEE--EeecCceee
Q psy15371 281 WLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKI--KLDQEHLET 335 (393)
Q Consensus 281 WL~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~g~~l--~VdQ~~LET 335 (393)
.+.+|=+|-|. .+.|.+++++|++|+|...+.|--++ +- .++-.||+.
T Consensus 6 fvevGRVv~i~----~G~~aGklavIVdIID~nrvLVdGp~---V~Rq~~n~k~l~L 55 (126)
T 4a18_F 6 FVQVGRVVYIN----YGADKGKLAVIVNIINQNRILIDGEH---IVRQVIPIRRVHL 55 (126)
T ss_dssp EEETTEEEEEC----SSTTTTEEEEEEEEETTTEEEEEETT---EEEEEEEGGGEEE
T ss_pred ceecceEEEEc----cCCccCCEEEEEEEecCCeEEEeCCC---cccceeeccceEE
Confidence 35566667553 22299999999999998888774442 21 455566654
No 143
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=22.40 E-value=34 Score=25.96 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=30.1
Q ss_pred eEEEEecCCceEEEEEcCCCcEE--EeecCce-eeecCCCCCeEEEEecCccCceEEE
Q psy15371 304 GTVEKVIDKYAAIVSLLDSKHKI--KLDQEHL-ETVIPNLGRQVLILCGKYKGEKAVL 358 (393)
Q Consensus 304 GvV~dV~d~~~c~V~l~d~g~~l--~VdQ~~L-ETVIP~~G~~V~VV~G~~RG~~G~L 358 (393)
|+|....+.+...|.+.+ |..+ .+....- ..+-|.+|+.|.|-.-+|-...|.+
T Consensus 11 G~Vi~~lg~~~y~V~~~~-g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I 67 (71)
T 1hr0_W 11 GVVTEALPNATFRVKLDS-GPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRI 67 (71)
T ss_dssp EECCCCCTTTBCCCEESS-SCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEE
T ss_pred EEEEEEeCCcEEEEEECC-CCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEE
Confidence 555555543444455543 4332 5555555 3677889999988654443334443
No 144
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=22.25 E-value=3.7e+02 Score=22.95 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=43.1
Q ss_pred CHHHHHhhHHHHHHHhhhhhhhcCCCCCCcccCceEEEEeeccCCcc-cccceeEEEEecCCceEEEEEcCCCcEEEeec
Q psy15371 252 TALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGEK-FYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQ 330 (393)
Q Consensus 252 saldeim~~~ee~kk~~~~~~~~~~r~~~WL~~~IvVKIidK~l~dg-yYkkKGvV~dV~d~~~c~V~l~d~g~~l~VdQ 330 (393)
.+|+.||+++.+..+. . .....| .+|-.+-..- -.|+ ||- |.|.++.+...+.|...|-|..-.+
T Consensus 26 ~~L~~L~~~l~~~~~~------~-p~~~~~-~~G~~c~A~~--~~d~~wyR--a~I~~~~~~~~~~V~fvDyGn~~~v-- 91 (169)
T 3ntk_A 26 PALEQMTDKLLDAEQD------L-PAFSDL-KEGALCVAQF--PEDEVFYR--AQIRKVLDDGKCEVHFIDFGNNAVT-- 91 (169)
T ss_dssp HHHHHHHHHHHHHGGG------C-CBCCCC-CTTCEEEEEE--TTTTEEEE--EEEEEECSTTCEEEEETTTTEEEEE--
T ss_pred HHHHHHHHHHHHHHhc------C-CCCCCC-CCCCEEEEEE--CCCCcEEE--EEEEEECCCCEEEEEEEecCCeEEh--
Confidence 4688888755543211 1 112356 4444443331 1355 776 8999998766899999998876554
Q ss_pred Cceeeec
Q psy15371 331 EHLETVI 337 (393)
Q Consensus 331 ~~LETVI 337 (393)
+.|-+..
T Consensus 92 ~~lr~l~ 98 (169)
T 3ntk_A 92 QQFRQLP 98 (169)
T ss_dssp SCEECCC
T ss_pred hhhhccC
Confidence 4555543
No 145
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.91 E-value=15 Score=23.81 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=19.5
Q ss_pred eeeecchhhhccCcCccccccCC
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~S 47 (393)
.|-|..|.|.|.....++-|..+
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2eon_A 12 PYKCQVCGKAFRVSSHLVQHHSV 34 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHTTT
T ss_pred ccCCCCCCcccCcHHHHHHHHHh
Confidence 47799999999999888888654
No 146
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.61 E-value=12 Score=23.68 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=18.4
Q ss_pred eeeecchhhhccCcCccccccC
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTS 46 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~ 46 (393)
.|-|..|.|.|.....++-|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (44)
T 2en7_A 12 PYVCNECGKAFRSKSYLIIHTR 33 (44)
T ss_dssp SSCCTTTCCCCSSHHHHHHHHT
T ss_pred CeECCCCCCccCCHHHHHHHhh
Confidence 4789999999998888887764
No 147
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein struct initiative; 3.00A {Enterococcus faecalis} SCOP: b.122.1.4
Probab=21.22 E-value=86 Score=28.02 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=13.2
Q ss_pred ecCCCCCeEEEEecC
Q psy15371 336 VIPNLGRQVLILCGK 350 (393)
Q Consensus 336 VIP~~G~~V~VV~G~ 350 (393)
.+|++|+..+||+|.
T Consensus 64 ~lP~vG~~~Ivld~~ 78 (166)
T 1t62_A 64 QLPKAGQYDIILDGQ 78 (166)
T ss_dssp CCCCTTCEEEEECTT
T ss_pred CCCCCCcEEEEEcCC
Confidence 489999999999984
No 148
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=21.03 E-value=32 Score=24.08 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=16.0
Q ss_pred cceeeeecchh----hhccCcCccccc
Q psy15371 22 QKLRWYCQMCQ----KQCRDENGFKCH 44 (393)
Q Consensus 22 qkLrwyCQ~Cq----KQCRDeNGFKcH 44 (393)
++|++||+.|+ -.|.....-+-|
T Consensus 16 e~l~lfC~~d~~~iC~~C~~~~~H~~H 42 (53)
T 2did_A 16 EALSLFCYEDQEAVCLICAISHTHRAH 42 (53)
T ss_dssp CBCCEEESSSCSEECHHHHTSSTTTTS
T ss_pred CeeeEEeCCCCeEEeccccCCCCCCCC
Confidence 78999999888 466654444444
No 149
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=21.00 E-value=2.7e+02 Score=20.97 Aligned_cols=47 Identities=17% Similarity=0.389 Sum_probs=29.3
Q ss_pred CcccCceEEEEeeccCCcc-cccceeEEEEecC-CceEEEEEcCCCcEEEeecCcee
Q psy15371 280 SWLHKNIIVKIVTKNLGEK-FYKKKGTVEKVID-KYAAIVSLLDSKHKIKLDQEHLE 334 (393)
Q Consensus 280 ~WL~~~IvVKIidK~l~dg-yYkkKGvV~dV~d-~~~c~V~l~d~g~~l~VdQ~~LE 334 (393)
.|.-.+..++. .|| ||- |.|+.|.. +.+|.|...| +...-+.-..|.
T Consensus 4 f~~GedVLarw-----sDG~fYl--GtI~~V~~~~~~clV~F~D-~s~~W~~~kdi~ 52 (58)
T 4hcz_A 4 LWEGQDVLARW-----TDGLLYL--GTIKKVDSAREVCLVQFED-DSQFLVLWKDIS 52 (58)
T ss_dssp CCTTCEEEEEC-----TTSCEEE--EEEEEEETTTTEEEEEETT-SCEEEEEGGGEE
T ss_pred cccCCEEEEEe-----cCCCEEe--EEEEEEecCCCEEEEEEcC-CCeEEEEhHHcc
Confidence 44445555543 456 887 88999865 4599999985 444444334443
No 150
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.92 E-value=16 Score=23.43 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.9
Q ss_pred eeeeecchhhhccCcCccccccC
Q psy15371 24 LRWYCQMCQKQCRDENGFKCHTS 46 (393)
Q Consensus 24 LrwyCQ~CqKQCRDeNGFKcH~~ 46 (393)
-.|-|..|.|.|.....++-|..
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2ytg_A 11 KPFKCGECGKSYNQRVHLTQHQR 33 (46)
T ss_dssp CSEECTTTCCEESSSHHHHTTGG
T ss_pred CCeECCCCCcccCCHHHHHHHHH
Confidence 35889999999999999998864
No 151
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.92 E-value=14 Score=22.21 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=17.3
Q ss_pred eeeecchhhhccCcCcccccc
Q psy15371 25 RWYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~ 45 (393)
.|-|..|.+.|.....++-|.
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2elt_A 9 PYKCPQCSYASAIKANLNVHL 29 (36)
T ss_dssp SEECSSSSCEESSHHHHHHHH
T ss_pred CCCCCCCCcccCCHHHHHHHH
Confidence 478999999998887777664
No 152
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.85 E-value=15 Score=23.57 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=18.2
Q ss_pred eeeecchhhhccCcCccccccC
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTS 46 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~ 46 (393)
.|-|..|.|.|.....++-|..
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~ 33 (45)
T 2epu_A 12 PFECTHCGKSFRAKGNLVTHQR 33 (45)
T ss_dssp SEEETTTTEEESSHHHHHHHHT
T ss_pred CccCCCCCCccCChHHHHHHHH
Confidence 4779999999998888877754
No 153
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.80 E-value=14 Score=22.37 Aligned_cols=21 Identities=24% Similarity=0.659 Sum_probs=17.2
Q ss_pred eeeecchhhhccCcCcccccc
Q psy15371 25 RWYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~ 45 (393)
.|-|..|.|.|.....++-|.
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~ 29 (37)
T 2elo_A 9 SYSCPVCEKSFSEDRLIKSHI 29 (37)
T ss_dssp CCEETTTTEECSSHHHHHHHH
T ss_pred CcCCCCCCCccCCHHHHHHHH
Confidence 377999999998887777774
No 154
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=20.71 E-value=89 Score=28.72 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCC
Q psy15371 339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYD 378 (393)
Q Consensus 339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~ 378 (393)
.+|.-|+||.|.|+|..+.++..-.+ +.+.| .||..
T Consensus 46 ~pGtVlIiL~Gr~~GKrvV~LKql~s-gllLV---tGP~~ 81 (191)
T 4a18_E 46 APGTVLILLAGRFRGKRVVFLKQLKS-GLLLV---TGPYK 81 (191)
T ss_dssp CTTEEEEECSSTTTTBEEEEEEECTT-SCEEE---ECCTT
T ss_pred cCCCEEEEeccccCCCEEEEEEecCC-CeEEE---ecCcc
Confidence 35777888899999999999977654 43433 46753
No 155
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.61 E-value=1.5e+02 Score=23.39 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=29.8
Q ss_pred ccCceEEEEeeccCCcccccceeEEEEecCCceEEEEEcCC-Cc-EEEeecCceee
Q psy15371 282 LHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDS-KH-KIKLDQEHLET 335 (393)
Q Consensus 282 L~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V~l~d~-g~-~l~VdQ~~LET 335 (393)
+.+|=+|.+. .+.|.+++++|.+++|...+-|--+.. +- --.+...||+.
T Consensus 4 ~~~Grvv~~~----~Gr~~Gk~~vIv~iiD~~~vlV~g~~~~~v~rk~kn~khl~l 55 (83)
T 3j21_5 4 IDVGRIAVVI----AGRRAGQKVVVVDIIDKNFVLVTGAGLNKVKRRRMNIKHIEP 55 (83)
T ss_dssp CCTTEEEECS----SSSSSCCCEEEEEECSSSCEEEECCTTTTCCCEEESCSSCEE
T ss_pred cccCEEEEEe----ecCCCCCEEEEEEEcCCCEEEEECCccCccCCeEechHHEEE
Confidence 4567777553 333899999999998876555543321 11 11455556553
No 156
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.53 E-value=14 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=19.0
Q ss_pred eeeecchhhhccCcCccccccCC
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~S 47 (393)
.|-|..|.|.|.....++-|..+
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~ 34 (46)
T 2ytp_A 12 HYECSECGKAFARKSTLIMHQRI 34 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHTT
T ss_pred CeECCcCCcccCCHHHHHHHHHH
Confidence 47899999999988888877653
No 157
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=20.50 E-value=10 Score=23.57 Aligned_cols=22 Identities=18% Similarity=0.659 Sum_probs=17.2
Q ss_pred eeeecchhhhccCcCccccccC
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTS 46 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~ 46 (393)
.+-|..|.|.|.....++-|..
T Consensus 6 ~~~C~~C~k~f~~~~~L~~H~~ 27 (39)
T 1njq_A 6 SYTCSFCKREFRSAQALGGHMN 27 (39)
T ss_dssp SEECTTTCCEESSHHHHHHHHH
T ss_pred ceECCCCCcccCCHHHHHHHHH
Confidence 3679999999988777776643
No 158
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.46 E-value=13 Score=22.49 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=16.3
Q ss_pred eeecchhhhccCcCcccccc
Q psy15371 26 WYCQMCQKQCRDENGFKCHT 45 (393)
Q Consensus 26 wyCQ~CqKQCRDeNGFKcH~ 45 (393)
+-|..|.|.|.....++-|.
T Consensus 3 ~~C~~C~k~F~~~~~L~~H~ 22 (33)
T 1rim_A 3 FACPECPKRFMRSDHLSKHI 22 (33)
T ss_dssp CCCSSSCCCCSSHHHHHHHH
T ss_pred ccCCCCCchhCCHHHHHHHH
Confidence 56999999998887777764
No 159
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.28 E-value=16 Score=23.49 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.0
Q ss_pred eeeecchhhhccCcCccccccCC
Q psy15371 25 RWYCQMCQKQCRDENGFKCHTSS 47 (393)
Q Consensus 25 rwyCQ~CqKQCRDeNGFKcH~~S 47 (393)
.|-|..|.|.|.....++-|..+
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2eoy_A 12 CFKCNKCEKTFSCSKYLTQHERI 34 (46)
T ss_dssp CEECSSSCCEESSSHHHHHHHTT
T ss_pred CEECcCCCCcCCCHHHHHHHHHH
Confidence 47899999999998888877643
Done!