BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15372
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/287 (68%), Positives = 221/287 (77%), Gaps = 10/287 (3%)
Query: 96 FAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKEDAVFLSALTTLPLP 155
F KDF+AGGV+AA+SKTAVAPIERVKLLLQVQH SKQIS E++YK + + +P
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKG---IIDCVVRIPKE 63
Query: 156 V-LLSIHEFSLLLIFVDNVIRYFPTQALNFAFKDKYKQIFLGGIDKS-QFWAYFXXXXXX 213
LS +L NVIRYFPTQALNFAFKDKYKQIFLGG+D+ QFW YF
Sbjct: 64 QGFLSFWRGNLA-----NVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLAS 118
Query: 214 XXXXXXTSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGV 273
TSLCFVYPLDFARTRL ADVGK REFTGLG+C+TKIFKSDG+ GLY+GF V
Sbjct: 119 GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNV 178
Query: 274 SVQGIIIYRASYFGFFDTAKGMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDTVRRRLM 333
SVQGIIIYRA+YFG +DTAKGMLPDPKN +VSW IAQ VT VAG+VSYPFDTVRRR+M
Sbjct: 179 SVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238
Query: 334 MQSGRGKSEIVYKGTLHCWAVIAKTEGPSAFFKGAFSNVLRGTGGAL 380
MQSGR ++I+Y GT+ CW IAK EGP AFFKGA+SNVLRG GGA
Sbjct: 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAF 285
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/46 (82%), Positives = 43/46 (93%)
Query: 24 FAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKG 69
F KDF+AGGV+AA+SKTAVAPIERVKLLLQVQH SKQIS E++YKG
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKG 52
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 24/281 (8%)
Query: 100 FIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKEDAVFLSALTTLPLPVLLS 159
F+ G +A ++ P++ K+ LQ+Q S+ + R A + L T+ L ++ +
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV---RTAASAQYRGVLGTI-LTMVRT 60
Query: 160 IHEFSLLLIFVDNVIRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFXXXXXXXXXXXX 219
SL V + R ++ D KQ + G + + +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGAL--- 117
Query: 220 TSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGVSVQGII 279
++ P D + R A + GG R + + I + +GI GL++G +V
Sbjct: 118 -AVAVAQPTDVVKVRFQAQA-RAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175
Query: 280 IYRASYFGFFDTAK------GMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDTVRRRLM 333
I + +D K ++ D F ++G A TTV ++ P D V+ R M
Sbjct: 176 IVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFG-AGFCTTV---IASPVDVVKTRYM 231
Query: 334 MQSGRGKSEIVYKGTLHCWAVIAKTEGPSAFFKGAFSNVLR 374
S G+ Y HC + + EGP AF+KG + LR
Sbjct: 232 -NSALGQ----YHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 132 QISEEQRYKEDAVFLSALTTLPLPVLLSIHEFSLLLIFVDNVIRYFPTQALNFAFKDKYK 191
++ ++ Y E+ LS +T PV+LS + L+ + + +Y+ + L+F K K
Sbjct: 381 EVWKDSAYPEE---LSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQK 437
Query: 192 QIFLGG 197
Q+F+GG
Sbjct: 438 QLFIGG 443
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 132 QISEEQRYKEDAVFLSALTTLPLPVLLSIHEFSLLLIFVDNVIRYFPTQALNFAFKDKYK 191
++ ++ Y E+ LS +T PV+LS + L+ + + +Y+ + L+F K K
Sbjct: 373 EVWKDSAYPEE---LSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQK 429
Query: 192 QIFLGG 197
Q+F+GG
Sbjct: 430 QLFIGG 435
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 132 QISEEQRYKEDAVFLSALTTLPLPVLLSIHEFSLLLIFVDNVIRYFPTQALNFAFKDKYK 191
++ ++ Y E+ LS +T PV+LS + L+ + + +Y+ + L+F K K
Sbjct: 422 EVWKDSAYPEE---LSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQK 478
Query: 192 QIFLGG 197
Q+F+GG
Sbjct: 479 QLFIGG 484
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 132 QISEEQRYKEDAVFLSALTTLPLPVLLSIHEFSLLLIFVDNVIRYFPTQALNFAFKDKYK 191
++ ++ Y E+ LS +T PV+LS + L+ + + +Y+ + L+F K K
Sbjct: 373 EVWKDSAYPEE---LSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQK 429
Query: 192 QIFLGG 197
Q+F+GG
Sbjct: 430 QLFIGG 435
>pdb|3C2U|A Chain A, Structure Of The Two Subsite D-Xylosidase From Selenomonas
Ruminantium In Complex With 1,3-Bis[tris(Hydroxymethyl)
Methylamino]propane
pdb|3C2U|B Chain B, Structure Of The Two Subsite D-Xylosidase From Selenomonas
Ruminantium In Complex With 1,3-Bis[tris(Hydroxymethyl)
Methylamino]propane
pdb|3C2U|C Chain C, Structure Of The Two Subsite D-Xylosidase From Selenomonas
Ruminantium In Complex With 1,3-Bis[tris(Hydroxymethyl)
Methylamino]propane
pdb|3C2U|D Chain D, Structure Of The Two Subsite D-Xylosidase From Selenomonas
Ruminantium In Complex With 1,3-Bis[tris(Hydroxymethyl)
Methylamino]propane
Length = 538
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 289 FDTAKGMLPDPKNAGFLVS--WGIAQVVTTVAGIVSYPFDTVRRRLMMQSGRGKSEIVYK 346
FD + + DP +LV+ W GI + +L+ GK EI+YK
Sbjct: 126 FDAS--LFHDPSGKKYLVNMYWDQRVYHHNFYGIALQEYSVAEEKLI-----GKPEIIYK 178
Query: 347 GTLHCWAVIAKTEGPSAFFKGAFSNVLRGTGG 378
GT IA TEGP ++ ++ GG
Sbjct: 179 GT-----DIAYTEGPHLYYINDMYYLMTAEGG 205
>pdb|1ZRT|C Chain C, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|P Chain P, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 437
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 289 FDTAKGMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDTVRRRLMMQSGRGKSEIVYKGT 348
+DT M+P PKN + WGI T V IV+ + + E + +
Sbjct: 30 YDTI--MIPTPKNLNWWWIWGIVLAFTLVLQIVTGIVLAMHYTPHVDLAFASVEHIMRDV 87
Query: 349 LHCWAV-IAKTEGPSAFFKGAFSNVLRG 375
WA+ G S FF + ++ RG
Sbjct: 88 NGGWAMRYIHANGASLFFLAVYIHIFRG 115
>pdb|1Y7B|A Chain A, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
pdb|1Y7B|B Chain B, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
pdb|1Y7B|C Chain C, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
pdb|1Y7B|D Chain D, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
Length = 542
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 319 GIVSYPFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTEGPSAFFKGAFSNVLRGTGG 378
GIV + ++L+ GK++I+YKGT I TEGP + G + + GG
Sbjct: 157 GIVLQEYSDKEKKLI-----GKAKIIYKGT-----DIKYTEGPHIYHIGDYYYLFTAEGG 206
Query: 379 A 379
Sbjct: 207 T 207
>pdb|1YI7|A Chain A, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
pdb|1YI7|B Chain B, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
pdb|1YI7|C Chain C, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
pdb|1YI7|D Chain D, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
Length = 542
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 295 MLPDPKNAGFLVS--WGIAQVVTTVAGIVSYPFDTVRRRLMMQSGRGKSEIVYKGTLHCW 352
+ D +LV+ W GIV + ++L+ GK++I+YKGT
Sbjct: 131 LFHDNDGKKYLVNXYWDQRTYNHNFYGIVLQEYSDKEKKLI-----GKAKIIYKGT---- 181
Query: 353 AVIAKTEGPSAFFKGAFSNVLRGTGGA 379
I TEGP + G + + GG
Sbjct: 182 -DIKYTEGPHIYHIGDYYYLFTAEGGT 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,313,073
Number of Sequences: 62578
Number of extensions: 344835
Number of successful extensions: 637
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 15
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)