Query psy15372
Match_columns 380
No_of_seqs 223 out of 2388
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 19:11:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.4E-55 4.7E-60 405.1 23.8 280 91-378 2-283 (297)
2 2lck_A Mitochondrial uncouplin 100.0 6.3E-52 2.1E-56 381.6 19.5 263 98-378 3-271 (303)
3 2lck_A Mitochondrial uncouplin 100.0 2.4E-46 8.1E-51 344.4 10.0 254 26-298 3-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 9E-46 3.1E-50 339.8 12.8 262 19-296 2-297 (297)
5 2a3d_A Protein (de novo three- 17.9 47 0.0016 20.8 1.1 30 44-73 10-51 (73)
6 3f2e_A SIRV coat protein; four 16.4 44 0.0015 22.5 0.8 33 343-375 6-42 (100)
7 2acm_A Mucin-1; auto-catalytic 14.6 47 0.0016 21.1 0.6 20 249-268 40-59 (66)
8 3vjj_A P9-1; 3.00A {Rice black 14.6 70 0.0024 27.5 1.8 36 316-361 273-308 (368)
9 4b19_A PEPA1; toxin, toxin apo 12.0 21 0.0007 19.4 -1.4 20 308-327 7-26 (30)
10 2bnk_A Early protein GP16.7; D 9.7 2.1E+02 0.0072 18.0 2.4 45 321-368 21-65 (67)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.4e-55 Score=405.08 Aligned_cols=280 Identities=74% Similarity=1.193 Sum_probs=244.7
Q ss_pred CChHHHHHHHHHHhHHHHHHhhhccchHHHHHHHHhcccccchhhhhhccchHHhhhhccccchh-hhhhhhhhhccccc
Q psy15372 91 ADPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKEDAVFLSALTTLPLP-VLLSIHEFSLLLIF 169 (380)
Q Consensus 91 ~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-G~~gly~~~l~~G~ 169 (380)
++..+.+..+++|++|++++.++++|+|++|+|+|++...........|++. ++++++++++ |++||| +|+
T Consensus 2 ~~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~---~~~~~~i~~~eG~~gly-----rG~ 73 (297)
T 1okc_A 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGI---IDCVVRIPKEQGFLSFW-----RGN 73 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSH---HHHHHHHHHHHCGGGGG-----TTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccH---HHHHHHHHhccchhhee-----ccc
Confidence 3456788999999999999999999999999999998654333344578899 9999999999 999999 999
Q ss_pred hhhhhhcccHHHHhHHHHHHHHHHHccCCC-CcchHHHHHHHhhhhhhhhHhhhhhhccHHHHHHHHhhccCCCCCCccc
Q psy15372 170 VDNVIRYFPTQALNFAFKDKYKQIFLGGID-KSQFWAYFAGNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREF 248 (380)
Q Consensus 170 ~~~~~~~~~~~~~~f~~y~~~k~~~~~~~~-~~~~~~~~~~~~~~g~~ag~~~~~v~~P~dvvktr~q~~~~~~~~~~~~ 248 (380)
.+++++.+|+.+++|.+||.+|+.+....+ ..+........+++|++||+++.++++|+|+||+|+|++....+....|
T Consensus 74 ~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~ 153 (297)
T 1okc_A 74 LANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREF 153 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCC
Confidence 999999999999999999999996543322 2233335567899999999999999999999999999986543345678
Q ss_pred ccHHHHHHHHHhhcCcccccccchhhhHHHHHhhhhhHhhHHHhhhhCCCCCCcchHHHHHHHHHHHHHHhhhcchHHHH
Q psy15372 249 TGLGDCLTKIFKSDGIVGLYRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDTV 328 (380)
Q Consensus 249 ~~~~~~~~~i~~~~G~~~ly~G~~~~~~r~~~~~~i~~~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvv 328 (380)
.++++++++|+++||+++||||+.|+++|.+|+.+++|.+||.+|+.+.+.++.+....+++|+++|++++++++|+|||
T Consensus 154 ~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvv 233 (297)
T 1okc_A 154 TGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTV 233 (297)
T ss_dssp SSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 99999999999999999999999999999999999999999999999876666677888999999999999999999999
Q ss_pred HHHHhhccCCCCCccccCCHHHHHHHHHHhhChhhhccChhhhhhhhccC
Q psy15372 329 RRRLMMQSGRGKSEIVYKGTLHCWAVIAKTEGPSAFFKGAFSNVLRGTGG 378 (380)
Q Consensus 329 ktr~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~~lr~~~~ 378 (380)
|+|+|++...++....|.++++|+++|+++||++|||||+.|+++|.+++
T Consensus 234 ktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~ 283 (297)
T 1okc_A 234 RRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG 283 (297)
T ss_dssp HHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccc
Confidence 99999986443344579999999999999999999999999999996543
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.3e-52 Score=381.59 Aligned_cols=263 Identities=23% Similarity=0.362 Sum_probs=232.3
Q ss_pred HHHHHHhHHHHHHhhhccchHHHHHHHHhcccccch---hhhhhccchHHhhhhccccchh-hhhhhhhhhccccchhhh
Q psy15372 98 KDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQI---SEEQRYKEDAVFLSALTTLPLP-VLLSIHEFSLLLIFVDNV 173 (380)
Q Consensus 98 ~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~-G~~gly~~~l~~G~~~~~ 173 (380)
.++++|++|++++.++++|+|++|+|+|++...... .....|++. ++++++++++ |+++|| +|+.+++
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~eG~~gly-----rG~~~~l 74 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGV---LGTILTMVRTEGPRSLY-----NGLVAGL 74 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCH---HHHHHHHHHHHCHHHHH-----SSHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCH---HHHHHHHHHhhCHHHHH-----cCCHHHH
Confidence 367899999999999999999999999998643210 113468888 9999999999 999999 9999999
Q ss_pred hhcccHHHHhHHHHHHHHHHHccCCCCcchHHHHHHHhhhhhhhhHhhhhhhccHHHHHHHHhhccCCCCCCcccccHHH
Q psy15372 174 IRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFAGNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGD 253 (380)
Q Consensus 174 ~~~~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~dvvktr~q~~~~~~~~~~~~~~~~~ 253 (380)
++.+|+.+++|.+||.+|+.+.+..+. .+....+++|++||+++.++++|+|+||+|+|++... .....|.++++
T Consensus 75 ~~~~~~~~i~f~~ye~~k~~~~~~~~~----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-~~~~~~~~~~~ 149 (303)
T 2lck_A 75 QRQMSFASVRIGLYDSVKQFYTKGSEH----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-GGGRRYQSTVE 149 (303)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHSCCCSS----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-CCSSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcC----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-CCCCCCCCHHH
Confidence 999999999999999999998654221 2456789999999999999999999999999998643 23457899999
Q ss_pred HHHHHHhhcCcccccccchhhhHHHHHhhhhhHhhHHHhhhhCCCCC--CcchHHHHHHHHHHHHHHhhhcchHHHHHHH
Q psy15372 254 CLTKIFKSDGIVGLYRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPK--NAGFLVSWGIAQVVTTVAGIVSYPFDTVRRR 331 (380)
Q Consensus 254 ~~~~i~~~~G~~~ly~G~~~~~~r~~~~~~i~~~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr 331 (380)
++++|+++||+++||||+.|+++|.+|+.+++|.+||.+|+.+.+.. +.+....+++|+++|++++++++|+||||+|
T Consensus 150 ~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktr 229 (303)
T 2lck_A 150 AYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTR 229 (303)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999987632 4567788999999999999999999999999
Q ss_pred HhhccCCCCCccccCCHHHHHHHHHHhhChhhhccChhhhhhhhccC
Q psy15372 332 LMMQSGRGKSEIVYKGTLHCWAVIAKTEGPSAFFKGAFSNVLRGTGG 378 (380)
Q Consensus 332 ~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~~lr~~~~ 378 (380)
+|.+. ...|.++++|+++|+++||++|||||+.|+++|.+|+
T Consensus 230 lq~~~-----~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~ 271 (303)
T 2lck_A 230 YMNSA-----LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSW 271 (303)
T ss_dssp HTTCC-----SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHH
T ss_pred HHhcc-----ccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhH
Confidence 99974 2459999999999999999999999999999998774
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.4e-46 Score=344.40 Aligned_cols=254 Identities=18% Similarity=0.244 Sum_probs=217.1
Q ss_pred HHHhhcchhhhhHhhhcCchhhhhhhhhcccc-----------------------ccchhhhhhhcccCCCccccccccC
Q psy15372 26 KDFIAGGVSAAVSKTAVAPIERVKLLLQVQHI-----------------------SKQISEEQRYKGKSNPNKTVQKQEA 82 (380)
Q Consensus 26 ~~~~~g~~a~~~~~~~~~Pld~iK~r~Q~~~~-----------------------~~~~~~~~~y~G~~~~~~~~~~~~~ 82 (380)
.++++|++||+++.+++||||+||+|+|++.. .+.++..++|+|+.+.+.+..+..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999742 1234566799999999998777776
Q ss_pred CCC--------CCCCCCChHHHHHHHHHHhHHHHHHhhhccchHHHHHHHHhcccccchhhhhhccchHHhhhhccccch
Q psy15372 83 PMP--------MAPALADPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKEDAVFLSALTTLPL 154 (380)
Q Consensus 83 ~~~--------~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 154 (380)
+.+ ......+..+....+++|++|++++.++++|+|+||+|+|++... .....|++. ++++++|++
T Consensus 83 i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~---~~~~~~i~~ 156 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQST---VEAYKTIAR 156 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCH---HHHHHHHHH
Confidence 665 101111135567899999999999999999999999999998542 123468888 999999999
Q ss_pred h-hhhhhhhhhccccchhhhhhcccHHHHhHHHHHHHHHHHccCCCCcchHHHHHHHhhhhhhhhHhhhhhhccHHHHHH
Q psy15372 155 P-VLLSIHEFSLLLIFVDNVIRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFAGNLASGGAAGATSLCFVYPLDFART 233 (380)
Q Consensus 155 ~-G~~gly~~~l~~G~~~~~~~~~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~dvvkt 233 (380)
+ |++||| +|+.+++++.+|+.+++|.+||.+|+.+.+...... +....+++|++||++++++++|+|+||+
T Consensus 157 ~eG~~gly-----rG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~---~~~~~~~~g~~ag~~~~~~~~P~dvvkt 228 (303)
T 2lck_A 157 EEGIRGLW-----KGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTD---DLPCHFTSAFGAGFCTTVIASPVDVVKT 228 (303)
T ss_dssp HHCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcChhhhh-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---chHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 9 999999 999999999999999999999999998865433222 3456799999999999999999999999
Q ss_pred HHhhccCCCCCCcccccHHHHHHHHHhhcCcccccccchhhhHHHHHhhhhhHhhHHHhhhhCCC
Q psy15372 234 RLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGVSVQGIIIYRASYFGFFDTAKGMLPD 298 (380)
Q Consensus 234 r~q~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~r~~~~~~i~~~~ye~~k~~~~~ 298 (380)
|+|.+... .|.++++++++|+++||++|||||+.|+++|.+|..+++|.+||.+|+.+.+
T Consensus 229 rlq~~~~~-----~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 229 RYMNSALG-----QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHTTCCSS-----SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHhcccc-----ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99997542 6899999999999999999999999999999999999999999999998865
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=9e-46 Score=339.75 Aligned_cols=262 Identities=27% Similarity=0.292 Sum_probs=213.4
Q ss_pred cChhhhHHHHhhcchhhhhHhhhcCchhhhhhhhhcccc--------------------ccchhhhhhhcccCCCccccc
Q psy15372 19 ADPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHI--------------------SKQISEEQRYKGKSNPNKTVQ 78 (380)
Q Consensus 19 ~~~~~~~~~~~~g~~a~~~~~~~~~Pld~iK~r~Q~~~~--------------------~~~~~~~~~y~G~~~~~~~~~ 78 (380)
+++++.+.++++|++||+++.+++||||+||||+|++.. .+.++..++|||+.+.+.+..
T Consensus 2 ~~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 81 (297)
T 1okc_A 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYF 81 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHH
Confidence 345678899999999999999999999999999999742 123456679999998888766
Q ss_pred cccCCCC-----------CCCCCCC--hHHHHHHHHHHhHHHHHHhhhccchHHHHHHHHhcccccchhhhhhccchHHh
Q psy15372 79 KQEAPMP-----------MAPALAD--PVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKEDAVF 145 (380)
Q Consensus 79 ~~~~~~~-----------~~~~~~~--~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~ 145 (380)
+..++.+ ......+ ..+....+++|++|++++.++++|+|+||+|+|++.... .....|++.
T Consensus 82 ~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~--~~~~~~~~~--- 156 (297)
T 1okc_A 82 PTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG--AAQREFTGL--- 156 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS--TTTCSCSSH---
T ss_pred HHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC--CcCcCCCCH---
Confidence 6655443 1111111 245678999999999999999999999999999985321 123468888
Q ss_pred hhhccccchh-hhhhhhhhhccccchhhhhhcccHHHHhHHHHHHHHHHHccCCCCcchHHHHHHHhhhhhhhhHhhhhh
Q psy15372 146 LSALTTLPLP-VLLSIHEFSLLLIFVDNVIRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFAGNLASGGAAGATSLCF 224 (380)
Q Consensus 146 ~~~~~~i~~~-G~~gly~~~l~~G~~~~~~~~~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v 224 (380)
++++++++++ |++||| +|+.+++++.+|+.+++|.+||.+|+.+.+... .+....+++|++||++++++
T Consensus 157 ~~~~~~i~~~eG~~gly-----rG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~-----~~~~~~~~~g~~ag~~a~~~ 226 (297)
T 1okc_A 157 GNCITKIFKSDGLRGLY-----QGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN-----VHIIVSWMIAQTVTAVAGLV 226 (297)
T ss_dssp HHHHHHHHHHHCHHHHT-----TTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC-----SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHhc-----CCchHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----ccHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999 999999999999999999999999997643221 13456789999999999999
Q ss_pred hccHHHHHHHHhhccCCCCCCcccccHHHHHHHHHhhcCcccccccchhhhHHHHHhhhhhHhhHHHhhhhC
Q psy15372 225 VYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGVSVQGIIIYRASYFGFFDTAKGML 296 (380)
Q Consensus 225 ~~P~dvvktr~q~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~r~~~~~~i~~~~ye~~k~~~ 296 (380)
++|+|+||+|+|++....+....|.++++++++|+++||++|||||+.|+++|. +..+++|.+||.+|+.+
T Consensus 227 t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 227 SYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred cChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 999999999999875433334578999999999999999999999999999996 57899999999998753
No 5
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=17.92 E-value=47 Score=20.81 Aligned_cols=30 Identities=43% Similarity=0.419 Sum_probs=18.5
Q ss_pred chhhhhhhhhccccc------------cchhhhhhhcccCCC
Q psy15372 44 PIERVKLLLQVQHIS------------KQISEEQRYKGKSNP 73 (380)
Q Consensus 44 Pld~iK~r~Q~~~~~------------~~~~~~~~y~G~~~~ 73 (380)
-|..||||+|+-+.+ .-.+..+-|+|-..+
T Consensus 10 rlaaiktrlqalggseaelaafekeiaafeselqaykgkgnp 51 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGKGNP 51 (73)
T ss_dssp HHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 356799999985522 122344577776654
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=16.37 E-value=44 Score=22.51 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=22.9
Q ss_pred cccCCHHHHHHHHHHhhCh----hhhccChhhhhhhh
Q psy15372 343 IVYKGTLHCWAVIAKTEGP----SAFFKGAFSNVLRG 375 (380)
Q Consensus 343 ~~~~~~~~~~~~i~~~eG~----~~lyrG~~~~~lr~ 375 (380)
+++.++-+-...++.+.|+ +++|.|+..++.|.
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 5566666667777777776 67888888777764
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=14.58 E-value=47 Score=21.15 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=17.3
Q ss_pred ccHHHHHHHHHhhcCccccc
Q psy15372 249 TGLGDCLTKIFKSDGIVGLY 268 (380)
Q Consensus 249 ~~~~~~~~~i~~~~G~~~ly 268 (380)
+++.+.+.+|++++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788899999999998885
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=14.57 E-value=70 Score=27.51 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=26.6
Q ss_pred HHHhhhcchHHHHHHHHhhccCCCCCccccCCHHHHHHHHHHhhCh
Q psy15372 316 TVAGIVSYPFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTEGP 361 (380)
Q Consensus 316 ~~a~~~t~P~dvvktr~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~ 361 (380)
..+++-.||||.+|-.++.. -++...+++.+.+||+
T Consensus 273 qLaTFdnypfdllRfqL~Sl----------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL----------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC----------CCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhh----------ccChHHHHHHHHhcCc
Confidence 35788899999996655543 3455788889999885
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=11.97 E-value=21 Score=19.37 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhcchHHH
Q psy15372 308 WGIAQVVTTVAGIVSYPFDT 327 (380)
Q Consensus 308 ~~~g~~ag~~a~~~t~P~dv 327 (380)
.++-.++|++-++.+|.++.
T Consensus 7 iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 7 IIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp STTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34556788888888888764
No 10
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=9.74 E-value=2.1e+02 Score=18.03 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=29.5
Q ss_pred hcchHHHHHHHHhhccCCCCCccccCCHHHHHHHHHHhhChhhhccCh
Q psy15372 321 VSYPFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTEGPSAFFKGA 368 (380)
Q Consensus 321 ~t~P~dvvktr~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~ 368 (380)
+-.|.|.|---. .+..+ ....-.++...-|.-|+-|.-+-+|||.
T Consensus 21 IrIP~DIIEdl~-~~~L~--te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 21 IRIPSDIIEDLV-NQRLQ--SEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp CCCCHHHHHHHH-TTCCC--CSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CcCcHHHHHHHH-HHhhh--hHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 456888886554 23222 2223345566678889999999999995
Done!