RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15372
(380 letters)
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 356 bits (914), Expect = e-122
Identities = 166/300 (55%), Positives = 196/300 (65%), Gaps = 34/300 (11%)
Query: 96 FAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQ--RY-----------KED 142
FA DF+ GG+SAA+SKTAVAPIERVK+L+Q Q +I + RY KE
Sbjct: 7 FATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQ 66
Query: 143 AVFLSALTTLPLPVLLSIHEFSLLLIFVDNVIRYFPTQALNFAFKDKYKQIFLGGIDKSQ 202
V SL NVIRYFPTQA NFAFKD +K +F K+
Sbjct: 67 GVL------------------SLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTD 108
Query: 203 FWAYFAGNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSD 262
FW +F N+ SGG AGA+SL VYPLDFARTRL +D+GK GG REFTGL DCL KI K
Sbjct: 109 FWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGK-GGDREFTGLFDCLMKISKQT 167
Query: 263 GIVGLYRGFGVSVQGIIIYRASYFGFFDTAKGML-PDPKNAGFLVSWGIAQVVTTVAGIV 321
G + LY+GFGVSVQGII+YR +YFG +D+AK +L + KN L W +AQ VT +AG++
Sbjct: 168 GFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDKNTNILYKWAVAQTVTILAGLI 227
Query: 322 SYPFDTVRRRLMMQSGR-GKSEIVYKGTLHCWAVIAKTEGPSAFFKGAFSNVLRGTGGAL 380
SYPFDTVRRR+MM SGR KSEI Y GTL CW I K EG FFKGA++NVLRG GGAL
Sbjct: 228 SYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGAGGAL 287
Score = 77.9 bits (192), Expect = 3e-16
Identities = 77/285 (27%), Positives = 114/285 (40%), Gaps = 55/285 (19%)
Query: 24 FAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQ--RYKGKSNPNKTVQKQE 81
FA DF+ GG+SAA+SKTAVAPIERVK+L+Q Q +I + RY G N + V K++
Sbjct: 7 FATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQ 66
Query: 82 APMPM-----------APALADPVAFAKDFI----------------------AGGVSAA 108
+ + P A AF KD+ +GG++ A
Sbjct: 67 GVLSLWRGNTANVIRYFPTQAFNFAF-KDYFKNMFPKYNQKTDFWKFFGVNILSGGLAGA 125
Query: 109 VSKTAVAPIE--RVKLLLQVQHISKQISEEQRYKEDAVFLSALTTLPLPVLLSIHEFSLL 166
S V P++ R +L I K E + L + + SL
Sbjct: 126 SSLLIVYPLDFARTRL---ASDIGKGGDRE---------FTGLFDCLMKISKQTGFLSLY 173
Query: 167 LIFVDNVIRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFAGNLASGGAAGATSLCFVY 226
F +V + F D K + G + +A AG S Y
Sbjct: 174 QGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDKNTNILYKWAVAQTVTILAGLIS----Y 229
Query: 227 PLDFARTRLGADVGKTGGAR-EFTGLGDCLTKIFKSDGIVGLYRG 270
P D R R+ G+ + ++TG DC KI K++G+ G ++G
Sbjct: 230 PFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKG 274
Score = 28.2 bits (63), Expect = 8.4
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 300 KNAGFLVSWGIAQVVTTVAGIVSYPFDTVRRRLMMQSGRGKSEIV------YKGTLHCWA 353
K F + + + ++ P + V+ +++Q+ EI Y G ++C+
Sbjct: 3 KKTNFATDFLMGGISAAISKTAVAPIERVK--MLIQTQDSIPEIKSGKVPRYSGIVNCFR 60
Query: 354 VIAKTEGPSAFFKGAFSNVLR 374
++K +G + ++G +NV+R
Sbjct: 61 RVSKEQGVLSLWRGNTANVIR 81
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 94.2 bits (235), Expect = 6e-24
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 204 WAYFAGNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDG 263
F +L +GG AGA + YPLD +TRL + GG+R++ G+ DC KI+K +G
Sbjct: 2 PLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQS--SAAGGSRKYKGILDCFKKIYKEEG 59
Query: 264 IVGLYRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPK 300
I GLY+G ++ + A YFG ++T K +L
Sbjct: 60 IRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 63.4 bits (155), Expect = 9e-13
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 300 KNAGFLVSWGIAQVVTTVAGIVSYPFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTE 359
FL S + +A V+YP D V+ RL + G + YKG L C+ I K E
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRK--YKGILDCFKKIYKEE 58
Query: 360 GPSAFFKGAFSNVLR 374
G +KG N+LR
Sbjct: 59 GIRGLYKGLLPNLLR 73
Score = 55.3 bits (134), Expect = 6e-10
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 92 DPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKEDAVFLSALTT 151
P++F +AGG++ A++ T P++ VK LQ S ++YK L
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQ----SSAAGGSRKYKG---ILDCFKK 53
Query: 152 LPLPVLLSIHE---FSLLLIFVDNVIRYFPTQALNFAFKDKYKQIFLG 196
+ E L + N++R P A+ F + K++ L
Sbjct: 54 I-------YKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLK 94
Score = 45.7 bits (109), Expect = 2e-06
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 20 DPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKG 69
P++F +AGG++ A++ T P++ VK LQ S ++YKG
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQ----SSAAGGSRKYKG 46
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 38.0 bits (88), Expect = 0.005
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 35/171 (20%)
Query: 210 NLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYR 269
NL +G +G +YP+D +T + A K F I LY
Sbjct: 6 NLVTGALSGVIVDAVLYPIDSIKTNIQAK------------------KSFSFSDIKKLYS 47
Query: 270 GFGVSVQGIIIYRASYFGFFDTAKGMLPD-----PKNAGFLVSWGIAQVVTTVAGIVSYP 324
G ++ G + A ++ F++ +K +L + K +L+S IA++ A IV P
Sbjct: 48 GILPTLVGTVPASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEI---TACIVRLP 104
Query: 325 FDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTEG-PSAFFKGAFSNVLR 374
F+ V++ + + + +Y+ I + EG PS K F ++R
Sbjct: 105 FEIVKQNMQVSGNISVLKTIYE--------ITQREGLPSFLGKSYFVMIVR 147
>gnl|CDD|239159 cd02758, MopB_Tetrathionate-Ra, The MopB_Tetrathionate-Ra CD
contains tetrathionate reductase, subunit A, (TtrA) and
other related proteins. The Salmonella enterica
tetrathionate reductase catalyses the reduction of
trithionate but not sulfur or thiosulfate. Members of
this CD belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 735
Score = 32.7 bits (75), Expect = 0.35
Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 281 YRASYFGFFDTAKGM---LPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDTVRRRLMMQSG 337
YRA + G PD NA F + G T PF RRL
Sbjct: 188 YRAGNGALMNDLDGYPHVKPDFDNAEFALFIG------TSPAQAGNPFKRQARRLAEART 241
Query: 338 RGKSEIVY 345
G + V
Sbjct: 242 EGNFKYVV 249
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 32.6 bits (75), Expect = 0.36
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 2/130 (1%)
Query: 10 APMPMAPALADPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKG 69
P APA A P A +A ++ A +E K L + +
Sbjct: 53 PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112
Query: 70 KSNPNKTVQKQEAPMPMAPALADPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHI 129
P ++ A A + + +AAV+ A IER+ +Q +
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIERIVNDTVMQEL 172
Query: 130 S--KQISEEQ 137
+ + EEQ
Sbjct: 173 RSLRGMLEEQ 182
>gnl|CDD|130412 TIGR01345, malate_syn_G, malate synthase G. This model describes
the G isozyme of malate synthase. Isocitrate synthase
and malate synthase form the glyoxylate shunt, which
generates additional TCA cycle intermediates [Energy
metabolism, TCA cycle].
Length = 721
Score = 32.6 bits (74), Expect = 0.39
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 46 ERVKLLLQVQHISKQI-----SEEQRYKGKSNPNKTVQKQ----EAPMPMAPALADPVAF 96
+R L + QHI+ + S+EQ K V +Q A PMA A+ AF
Sbjct: 629 DRATLRISSQHIANWLRHGIVSKEQVQASLERMAKVVDQQNAGDPAYRPMAGNFANSCAF 688
Query: 97 --AKDFIAGGV 105
A D I G
Sbjct: 689 QAASDLIFLGT 699
Score = 29.5 bits (66), Expect = 4.0
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 1 MSKTVQKQ----EAPMPMAPALADPVAF--AKDFIAGGV 33
M+K V +Q A PMA A+ AF A D I G
Sbjct: 661 MAKVVDQQNAGDPAYRPMAGNFANSCAFQAASDLIFLGT 699
>gnl|CDD|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed.
Length = 939
Score = 28.9 bits (65), Expect = 5.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 240 GKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGV 273
G G R F L D L +IF D + GL F V
Sbjct: 676 GDPGSTRFFLSLEDNLLRIFGGDRVAGLMNAFRV 709
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
alpha.
Length = 362
Score = 28.1 bits (63), Expect = 9.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 44 PIERVKLLLQVQHIS-----KQISEEQRYKGKSNPNKTVQKQEAPMPMAPAL 90
PIERV+ LL ++ K I +E R K + + +E+PMP L
Sbjct: 288 PIERVRKLLLAHELATEAELKDIEKEIR---KEVDDAVAKAKESPMPDPSEL 336
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 28.3 bits (63), Expect = 9.9
Identities = 14/104 (13%), Positives = 25/104 (24%)
Query: 15 APALADPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKGKSNPN 74
A A+ A + G AA++ A A + + + ++
Sbjct: 388 AAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA 447
Query: 75 KTVQKQEAPMPMAPALADPVAFAKDFIAGGVSAAVSKTAVAPIE 118
K A + A + A A E
Sbjct: 448 PVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFE 491
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,585,596
Number of extensions: 1941137
Number of successful extensions: 1659
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1649
Number of HSP's successfully gapped: 30
Length of query: 380
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 281
Effective length of database: 6,546,556
Effective search space: 1839582236
Effective search space used: 1839582236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)