RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15372
(380 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 380 bits (978), Expect = e-132
Identities = 207/293 (70%), Positives = 235/293 (80%), Gaps = 14/293 (4%)
Query: 92 DPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKEDAVFLSALTT 151
++F KDF+AGGV+AA+SKTAVAPIERVKLLLQVQH SKQIS E++YK + +
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKG---IIDCVVR 59
Query: 152 LPLPVLLSIHEFSLLLIF---VDNVIRYFPTQALNFAFKDKYKQIFLGGIDK-SQFWAYF 207
+P E L + + NVIRYFPTQALNFAFKDKYKQIFLGG+D+ QFW YF
Sbjct: 60 IP-------KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYF 112
Query: 208 AGNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGL 267
AGNLASGGAAGATSLCFVYPLDFARTRL ADVGK REFTGLG+C+TKIFKSDG+ GL
Sbjct: 113 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 172
Query: 268 YRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDT 327
Y+GF VSVQGIIIYRA+YFG +DTAKGMLPDPKN +VSW IAQ VT VAG+VSYPFDT
Sbjct: 173 YQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDT 232
Query: 328 VRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTEGPSAFFKGAFSNVLRGTGGAL 380
VRRR+MMQSGR ++I+Y GT+ CW IAK EGP AFFKGA+SNVLRG GGA
Sbjct: 233 VRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAF 285
Score = 142 bits (359), Expect = 1e-39
Identities = 80/314 (25%), Positives = 121/314 (38%), Gaps = 56/314 (17%)
Query: 20 DPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKGKSNPNKTVQK 79
++F KDF+AGGV+AA+SKTAVAPIERVKLLLQVQH SKQIS E++YKG + + K
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK 62
Query: 80 QE----------APMPM-APALA----------------------DPVAFAKDFIAGGVS 106
++ A + P A FA + +GG +
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAA 122
Query: 107 AAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKEDAVFLSALTTLPLPVLLSIHE---- 162
A S V P++ + L + + ++ + + I +
Sbjct: 123 GATSLCFVYPLDFARTRLAAD--VGKGAAQREFT-----------GLGNCITKIFKSDGL 169
Query: 163 FSLLLIFVDNVIRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFAGNLASGGAAGATSL 222
L F +V +A F D K + + + A +
Sbjct: 170 RGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIV-----SWMIAQTVTAVAG 224
Query: 223 CFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGVSVQGIIIYR 282
YP D R R+ G+ G +TG DC KI K +G ++G +V +
Sbjct: 225 LVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGG 283
Query: 283 ASYFGFFDTAKGML 296
A +D K +
Sbjct: 284 AFVLVLYDEIKKFV 297
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 123 bits (311), Expect = 9e-33
Identities = 61/302 (20%), Positives = 100/302 (33%), Gaps = 60/302 (19%)
Query: 97 AKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQR--------------YKED 142
F+ G +A ++ P++ K+ LQ+Q S+ + + +
Sbjct: 2 TVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTE 61
Query: 143 AVF-----LSALTTLPLPVLLSIHEFSLLLIFVDNVIRYFPTQALNFAFKDKYKQIFLGG 197
L A L +R D KQ + G
Sbjct: 62 GPRSLYNGLVA---------------GLQRQMSFASVR--------IGLYDSVKQFYTKG 98
Query: 198 IDKSQFWAYFAGNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTK 257
+ + + L +G GA ++ P D + R A + GG R + +
Sbjct: 99 SEHAGIGS----RLLAGSTTGALAVAVAQPTDVVKVRFQAQ-ARAGGGRRYQSTVEAYKT 153
Query: 258 IFKSDGIVGLYRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPKNAG-----FLVSWGIAQ 312
I + +GI GL++G +V I + +D K L S A
Sbjct: 154 IAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAG 213
Query: 313 VVTTVAGIVSYPFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTEGPSAFFKGAFSNV 372
TTV ++ P D V+ R M + Y HC + + EGP AF+KG +
Sbjct: 214 FCTTV---IASPVDVVKTRYMNSALGQ-----YHSAGHCALTMLRKEGPRAFYKGFMPSF 265
Query: 373 LR 374
LR
Sbjct: 266 LR 267
Score = 115 bits (289), Expect = 1e-29
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 7/172 (4%)
Query: 210 NLASGGAAGATSLCFVYPLDFARTRL-----GADVGKTGGAREFTGLGDCLTKIFKSDGI 264
G A + +PLD A+ RL + +T + ++ G+ + + +++G
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 265 VGLYRGFGVSVQGIIIYRASYFGFFDTAKGML-PDPKNAGFLVSWGIAQVVTTVAGIVSY 323
LY G +Q + + + G +D+ K ++AG +A V+
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQ 123
Query: 324 PFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTEGPSAFFKGAFSNVLRG 375
P D V+ R Q+ G Y+ T+ + IA+ EG +KG NV R
Sbjct: 124 PTDVVKVRFQAQARAGGGR-RYQSTVEAYKTIAREEGIRGLWKGTSPNVARN 174
Score = 74.6 bits (184), Expect = 3e-15
Identities = 45/283 (15%), Positives = 88/283 (31%), Gaps = 57/283 (20%)
Query: 25 AKDFIAGGVSAAVSKTAVAPIERVKLLLQVQ---HISKQISEEQRYKGKSNPNKTVQKQE 81
F+ G +A ++ P++ K+ LQ+Q + + +Y+G T+ + E
Sbjct: 2 TVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTE 61
Query: 82 APMPM----APAL------------------------ADPVAFAKDFIAGGVSAAVSKTA 113
P + L ++ +AG + A++
Sbjct: 62 GPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAV 121
Query: 114 VAPIERVKLLLQVQHISKQISEEQRYKEDAVFLSALTTLPLPVLLSIHEFSLLLIF---V 170
P + VK+ Q Q + +RY+ + A T+ E + ++
Sbjct: 122 AQPTDVVKVRFQAQA---RAGGGRRYQS---TVEAYKTI-------AREEGIRGLWKGTS 168
Query: 171 DNVIRYFPTQALNFAFKDKYKQIFLG-GIDKSQFWAYFAGNLASGGAAGATSLCFVYPLD 229
NV R D K L + +F +G + P+D
Sbjct: 169 PNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIAS----PVD 224
Query: 230 FARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFG 272
+TR ++ G C + + +G Y+GF
Sbjct: 225 VVKTRYMNS-----ALGQYHSAGHCALTMLRKEGPRAFYKGFM 262
Score = 30.3 bits (69), Expect = 1.0
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 20 DPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKGKSNPNKTVQK 79
+ +AG + A++ P + VK+ Q Q + +RY+ KT+ +
Sbjct: 100 EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA---RAGGGRRYQSTVEAYKTIAR 156
Query: 80 QE 81
+E
Sbjct: 157 EE 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 4e-04
Identities = 54/328 (16%), Positives = 92/328 (28%), Gaps = 112/328 (34%)
Query: 96 FAKDFIAGGVSAAVSKTAVAPIERVKLLLQ-VQHISKQISEEQRYKEDAVFLSALTTLPL 154
F K A P E L+ + + ++S + + + D V LT
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAE---LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 155 PVLLS--IHEF--SLL------LIFVDNVIR-YFPTQAL-NFAFKDKYKQIFLGGID--K 200
L IH LL L+ +I+ Y + + F K +
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 201 SQFWAYFAGNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFK 260
+Q A F GG G T F E L +++
Sbjct: 154 AQLVAIF------GG-QGNTDDYF---------------------EE-------LRDLYQ 178
Query: 261 SDGIVGLYRGFGVSVQGIIIYRA--------------SYFGFFDTAKGM-----LPDPKN 301
+ Y V +I + A F +G+ L +P N
Sbjct: 179 T------YHVL---VGDLIKFSAETLSELIRTTLDAEKVFT-----QGLNILEWLENPSN 224
Query: 302 A---GFL----VSW---GIAQ-----VVTTVAGIVSYPFDTVRRRLMMQSGRGKSEIVYK 346
+L +S G+ Q V + G + +R L +G + +
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG---FTPGELRSYLKGATGHSQGLVTA- 280
Query: 347 GTLHCWAVIAKTEGPSAFFKGAFSNVLR 374
IA+T+ +FF + +
Sbjct: 281 ------VAIAETDSWESFFV-SVRKAIT 301
Score = 33.1 bits (75), Expect = 0.18
Identities = 36/197 (18%), Positives = 51/197 (25%), Gaps = 76/197 (38%)
Query: 155 PVLLSIHEFSLLLIFVDNVIRYFPTQALN---FAFKDKYKQ--IFL------------GG 197
+ I+E S F L+ F Q + L G
Sbjct: 1705 KIFKEINEHSTSYTFRS------EKGLLSATQFT------QPALTLMEKAAFEDLKSKGL 1752
Query: 198 IDKSQFWAYFAGNLASGG-----AAGATSLCF--VYPLDFARTRLGAD-VGKTGGAREFT 249
I A FAG+ S G A+ A + + + F R V + R
Sbjct: 1753 IPAD---ATFAGH--SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 250 GLGDCLTKIFKSDGIVGLYRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPKNAGFLVSWG 309
G+ + G V F ++ R K G+LV
Sbjct: 1808 GMIAI------NPGRVAA--SFSQEALQYVVERVG---------------KRTGWLVE-- 1842
Query: 310 IA-------QVVTTVAG 319
I Q V AG
Sbjct: 1843 IVNYNVENQQYV--AAG 1857
Score = 31.9 bits (72), Expect = 0.44
Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 51/217 (23%)
Query: 23 AFAKDFIAGG----VSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYK-GKSNPNKTV 77
F ++ G ++A + + + + K L++ ++ +++ K S + V
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 78 QKQEAPMPMA------------PALAD----PVAFAKDFIAGGVSAAVSKTAVAPIERVK 121
+ A + +A L D D I + +S+ ++ K
Sbjct: 150 GEGNAQL-VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF-SAETLSELIRTTLDAEK 207
Query: 122 LLLQVQHISKQISEEQRYKEDAVFLSALTTLPLPVLLSIHEFSLLLIFVDNVIRYFPTQA 181
+ Q +I + + + LS + P LI V Q
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCP-------------LIGV--------IQL 246
Query: 182 LNFAFKDKYKQIFLGGIDKSQFWAYFAGNLASGGAAG 218
++ K L G + +Y G A+G + G
Sbjct: 247 AHYVVTAK-----LLGFTPGELRSYLKG--ATGHSQG 276
Score = 27.7 bits (61), Expect = 7.6
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 29/77 (37%)
Query: 289 FDTAKGMLPDPKN---AGFLVS---------WGIAQVVTTVAG--------IVSY----P 324
F + KG+L + A L+ G+ T AG + S
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 325 F-DTVRRRLMMQSGRGK 340
V ++ RG
Sbjct: 1779 IESLV--EVVFY--RGM 1791
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 5e-04
Identities = 50/339 (14%), Positives = 100/339 (29%), Gaps = 112/339 (33%)
Query: 44 PIERVK---LLLQVQHISKQISEE----QRYKGKSNPNKTVQKQEA------PMPMAPAL 90
P E + L + I++ I + +K N +K E+ P
Sbjct: 319 PREVLTTNPRRLSI--IAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 91 ADPVAFAKDF-IAGGVSAAVSKTAVAPIERVKLL----------LQVQHISKQISEEQRY 139
F I P + L+ + V + K E++
Sbjct: 376 DRLSVFPPSAHI--------------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 140 KEDAVFLSAL---TTLPLPVLLSIHEFSLLLIFVD--NVIRYFPTQALNFAFKDKYKQIF 194
KE + + ++ + L ++H VD N+ + F + L + D+Y
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHR-----SIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 195 LG----GIDKSQFWAYFAGNLASGGAAGATSLCFVYPLDFARTR-LGADVGKTGGAREFT 249
+G I+ + F V+ LDF R L + A +
Sbjct: 477 IGHHLKNIEHPERMTLFRM---------------VF-LDF---RFLEQKIRHDSTAWNAS 517
Query: 250 G-LGDCLTKIFKSDGIVGLYRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPKNAGFLVSW 308
G + + L ++ Y+ + I Y + ++ + FL
Sbjct: 518 GSILNTLQQLKF-------YKPY------ICDNDPKY-------ERLVNAILD--FLPKI 555
Query: 309 GIAQVVTTVAGIVSYPF-DTVRRRLMMQSGRGKSEIVYK 346
++ + D +R LM + E +++
Sbjct: 556 E--------ENLICSKYTDLLRIALM-----AEDEAIFE 581
Score = 35.2 bits (80), Expect = 0.036
Identities = 45/389 (11%), Positives = 95/389 (24%), Gaps = 139/389 (35%)
Query: 20 DPVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKGKSNPNKTVQ- 78
D FAK + R++ L+++ ++ + N +
Sbjct: 122 DNQVFAKYNV----------------SRLQPYLKLRQALLEL--------RPAKNVLIDG 157
Query: 79 -----KQEAPMPMAPALADPVAFAKDFI---AGGV---SAAVSKTAVAPIERVKLLLQVQ 127
K +A V + + + + +L +Q
Sbjct: 158 VLGSGKT--------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET------VLEMLQ 203
Query: 128 HISKQISEEQRYKEDAVFLSALTTLPLPV---------LLSIHEFSLLLIFVDNV----- 173
+ QI + D + + L + LL + L+ + NV
Sbjct: 204 KLLYQIDPNWTSRSDH-----SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 174 IRYF-----------PTQALNFAFKDKYKQIFL----GGIDKSQFWAYFAGNLASGGAAG 218
F Q +F I L + + + L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC----R 314
Query: 219 ATSL----CFVYPLDFARTRLGADVGKTGGAREFTG--------LGDCLTKIFKSDGIVG 266
L P + + + R+ D LT I +S
Sbjct: 315 PQDLPREVLTTNPR--RLSIIAESI------RDGLATWDNWKHVNCDKLTTIIESS---- 362
Query: 267 LYRGFGVSVQGIIIYRASYFGFFDTAKGMLPD----PKNAGFLVS-WGIAQVVTTVAGIV 321
++V YR + + P P L W + + V +V
Sbjct: 363 ------LNVLEPAEYRKMFDRLS-----VFPPSAHIP--TILLSLIWF-DVIKSDVMVVV 408
Query: 322 SYPFDTVRRRLMMQSGRGKSEIVYKGTLH 350
+ + + +++ + K + +
Sbjct: 409 ----NKLHKYSLVE-KQPKESTIS---IP 429
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.10
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 5/22 (22%)
Query: 3 KTVQKQEAPMPM-----APALA 19
+ ++K +A + + APALA
Sbjct: 20 QALKKLQASLKLYADDSAPALA 41
Score = 32.6 bits (73), Expect = 0.10
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 5/22 (22%)
Query: 75 KTVQKQEAPMPM-----APALA 91
+ ++K +A + + APALA
Sbjct: 20 QALKKLQASLKLYADDSAPALA 41
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 27.4 bits (61), Expect = 8.8
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 273 VSVQGIIIYRASYFGFFDTAKGMLPDPKNAGFL 305
VS+ YR FGF NAG
Sbjct: 160 VSIN----YRTGPFGFLGGDAITAEGNTNAGLH 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,713,123
Number of extensions: 350231
Number of successful extensions: 673
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 31
Length of query: 380
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 285
Effective length of database: 4,049,298
Effective search space: 1154049930
Effective search space used: 1154049930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)