RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15372
         (380 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score =  179 bits (455), Expect = 1e-54
 Identities = 206/289 (71%), Positives = 232/289 (80%), Gaps = 8/289 (2%)

Query: 93  PVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKEDAVFLSALTTL 152
            ++F KDF+AGGV+AA+SKTAVAPIERVKLLLQVQH SKQIS E++YK     +  +  +
Sbjct: 3   ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKG---IIDCVVRI 59

Query: 153 PLPVLLSIHEFSLLLIFVDNVIRYFPTQALNFAFKDKYKQIFLGGIDK-SQFWAYFAGNL 211
           P            L     NVIRYFPTQALNFAFKDKYKQIFLGG+D+  QFW YFAGNL
Sbjct: 60  PKEQGFLSFWRGNL----ANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNL 115

Query: 212 ASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYRGF 271
           ASGGAAGATSLCFVYPLDFARTRL ADVGK    REFTGLG+C+TKIFKSDG+ GLY+GF
Sbjct: 116 ASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 175

Query: 272 GVSVQGIIIYRASYFGFFDTAKGMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDTVRRR 331
            VSVQGIIIYRA+YFG +DTAKGMLPDPKN   +VSW IAQ VT VAG+VSYPFDTVRRR
Sbjct: 176 NVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRR 235

Query: 332 LMMQSGRGKSEIVYKGTLHCWAVIAKTEGPSAFFKGAFSNVLRGTGGAL 380
           +MMQSGR  ++I+Y GT+ CW  IAK EGP AFFKGA+SNVLRG GGA 
Sbjct: 236 MMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAF 284



 Score = 97.5 bits (241), Expect = 1e-23
 Identities = 75/288 (26%), Positives = 109/288 (37%), Gaps = 47/288 (16%)

Query: 21  PVAFAKDFIAGGVSAAVSKTAVAPIERVKLLLQVQHISKQISEEQRYKGKSNPNKTVQKQ 80
            ++F KDF+AGGV+AA+SKTAVAPIERVKLLLQVQH SKQIS E++YKG  +    + K+
Sbjct: 3   ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKE 62

Query: 81  EAPMPMAPALADPV---------------------------------AFAKDFIAGGVSA 107
           +  +         V                                  FA +  +GG + 
Sbjct: 63  QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAG 122

Query: 108 AVSKTAVAPIERVKLLLQVQHISKQISEEQRYKEDAVFLSALTTLPLPVLLSIHEFSLLL 167
           A S   V P++  +  L           E     + +     +              L  
Sbjct: 123 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGL---------RGLYQ 173

Query: 168 IFVDNVIRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFAGNLASGGAAGATSLCFVYP 227
            F  +V      +A  F   D  K +            +   +        A +    YP
Sbjct: 174 GFNVSVQGIIIYRAAYFGVYDTAKGML-----PDPKNVHIIVSWMIAQTVTAVAGLVSYP 228

Query: 228 LDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGVSV 275
            D  R R+    G+ G    +TG  DC  KI K +G    ++G   +V
Sbjct: 229 FDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV 276


>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA,
           nucleotide-binding domains {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 219

 Score = 26.9 bits (59), Expect = 3.3
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 240 GKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGVS 274
           G  G +R +  LGD L + F    +  L     + 
Sbjct: 179 GDPGESRFYLSLGDELMRRFNGAALETLLTRLNLP 213


>d1v1oa1 b.40.2.2 (A:18-108) Exotoxin 1 (SET1, Superantigen-like
           protein 7) {Staphylococcus aureus [TaxId: 1280]}
          Length = 91

 Score = 25.5 bits (56), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 176 YFPTQALNFAFKDKYKQIFLGGIDKSQF 203
           Y  +  + F  KD+  Q+FL G DK Q+
Sbjct: 32  YNGSNVVRFNPKDQNHQLFLLGKDKEQY 59


>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 726

 Score = 26.5 bits (58), Expect = 7.0
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 1   MSKTVQKQEAP----MPMAPALADPVAF--AKDFIAGGVS 34
           M+  V +Q A      PMAP   D +AF  A++ I  G  
Sbjct: 664 MAPLVDRQNAGDVAYRPMAPNFDDSIAFLAAQELILSGAQ 703


>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 101

 Score = 24.8 bits (54), Expect = 9.3
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 44  PIERVKLLLQVQHISKQISEEQRYKGKSNPNKTVQKQE 81
              R K +L    I K++  E     +       +K+E
Sbjct: 64  LSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRE 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,338,585
Number of extensions: 61429
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 6
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)