BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15374
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P07992|ERCC1_HUMAN DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1
SV=1
Length = 297
Score = 171 bits (433), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/134 (58%), Positives = 104/134 (77%), Gaps = 6/134 (4%)
Query: 68 SNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYHALKPDYIADR 127
SN+I+V+PRQ+GNP+LK + VPWE+ D +IPDYV+G++TCALFLS++YH L PDYI R
Sbjct: 98 SNSIIVSPRQRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFLSLRYHNLHPDYIHGR 156
Query: 128 IKALGKLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFE 182
+++LGK + L QVD KDP ALK L ++C+L D TL+LAWSPEEAG +ETYK +E
Sbjct: 157 LQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYE 216
Query: 183 NKPPDLIMEKQDVD 196
KP DL+MEK + D
Sbjct: 217 QKPADLLMEKLEQD 230
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 197 ILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 230
>sp|Q1LZ75|ERCC1_BOVIN DNA excision repair protein ERCC-1 OS=Bos taurus GN=ERCC1 PE=2 SV=1
Length = 294
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/134 (58%), Positives = 104/134 (77%), Gaps = 6/134 (4%)
Query: 68 SNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYHALKPDYIADR 127
SN+I+V+PRQ+GNP+L+ + VPWE+ D ++PDYV+G++TCALFLS++YH L PDYI R
Sbjct: 94 SNSIIVSPRQRGNPVLRFVRNVPWEFGD-VLPDYVLGQSTCALFLSLRYHNLHPDYIHQR 152
Query: 128 IKALGKLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFE 182
+++LGK Y L QVD KDP ALK L ++C+L D TL+LAWSPEEAG +ETYK +E
Sbjct: 153 LQSLGKSYALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYE 212
Query: 183 NKPPDLIMEKQDVD 196
KP DL+MEK + D
Sbjct: 213 QKPADLLMEKLEQD 226
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 193 ILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 226
>sp|P07903|ERCC1_MOUSE DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2
SV=2
Length = 298
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 111/154 (72%), Gaps = 9/154 (5%)
Query: 45 VPAAQNSATSES-VQPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVM 103
VP A E+ Q + GA SN+I+V+PRQ+GNP+LK + VPWE+ + +IPDYV+
Sbjct: 76 VPTGSEPAAGENPSQTLKTGAK--SNSIIVSPRQRGNPVLKFVRNVPWEFGE-VIPDYVL 132
Query: 104 GRTTCALFLSIKYHALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLC 158
G++TCALFLS++YH L PDYI +R+++LGK + L QVD KDP ALK L ++C+L
Sbjct: 133 GQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILA 192
Query: 159 DLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEK 192
D TL+LAWS EEAG +ETYK +E KP DL+MEK
Sbjct: 193 DCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEK 226
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEK 30
+LAWS EEAG +ETYK +E KP DL+MEK
Sbjct: 197 VLAWSAEEAGRYLETYKAYEQKPADLLMEK 226
>sp|Q06182|SWI10_SCHPO Mating-type switching protein swi10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=swi10 PE=3 SV=1
Length = 252
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 101/153 (66%), Gaps = 7/153 (4%)
Query: 58 QPSRAGASK-SSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKY 116
QP+ S+ ++++ILVNPRQKGNPLL H+ VPWEY D I+PD+VMG C+LFLS+KY
Sbjct: 29 QPTPQKVSRVTAHSILVNPRQKGNPLLPHVRNVPWEYTD-IVPDFVMGTGICSLFLSLKY 87
Query: 117 HALKPDYIADRIKALGKLYKLQ-----VDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEA 171
H L P+YI RI LGK Y L+ VD ++ +++ L + ++ TL+LAWS EEA
Sbjct: 88 HHLHPEYIYSRISKLGKSYNLRILLILVDVENHQASIQELVKTSIVNQYTLILAWSSEEA 147
Query: 172 GEMIETYKVFENKPPDLIMEKQDVDPHSKTWNF 204
+ETYK +EN P LIMEK D S+ +F
Sbjct: 148 ARYLETYKAYENMSPALIMEKPSTDYLSQVQSF 180
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVDPHSKTWNF 42
+LAWS EEA +ETYK +EN P LIMEK D S+ +F
Sbjct: 139 ILAWSSEEAARYLETYKAYENMSPALIMEKPSTDYLSQVQSF 180
>sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1
PE=2 SV=1
Length = 410
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 102/167 (61%), Gaps = 7/167 (4%)
Query: 35 PHSKTWNFDPVPAAQNSATSESVQPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYD 94
PHS + A +S+T + + +++ NAILV+ RQKGNPLLKHI V W +
Sbjct: 91 PHSSSQTHQ-TDGASSSSTPVATGSVPSNTTQNRNAILVSHRQKGNPLLKHIRNVKWVFS 149
Query: 95 DSIIPDYVMGRTTCALFLSIKYHALKPDYIADRIKALGKLYKL-----QVDSKDPHHALK 149
D IIPDYV+G+ +CAL+LS++YH L PDY+ RI+ L K +KL VD +D L
Sbjct: 150 D-IIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIRELQKNFKLSVVLCHVDVEDTVKPLL 208
Query: 150 YLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 196
+T+ LL D TL+ AWS E +ET KV+ENKP DLI + D D
Sbjct: 209 EVTKTALLHDCTLLCAWSMTECARYLETIKVYENKPADLIQGQMDTD 255
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+ AWS E +ET KV+ENKP DLI + D D
Sbjct: 222 LCAWSMTECARYLETIKVYENKPADLIQGQMDTD 255
>sp|P06838|RAD10_YEAST DNA repair protein RAD10 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD10 PE=1 SV=1
Length = 210
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 64 ASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDS-----IIPDYVMGRTTCALFLSIKYHA 118
+++ +LVN QK NPLL H+ W Y S I DY++ R LFL++ YH
Sbjct: 86 STRPGKTVLVNTTQKENPLLNHLKSTNWRYVSSTGINMIYYDYLV-RGRSVLFLTLTYHK 144
Query: 119 LKPDYIADRIKALGK----LYKLQVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEM 174
L DYI+ R++ L + + VD + L +T++C+ TL+LA++ E+A +
Sbjct: 145 LYVDYISRRMQPLSRNENNILIFIVDDNNSEDTLNDITKLCMFNGFTLLLAFNFEQAAKY 204
Query: 175 IE 176
IE
Sbjct: 205 IE 206
>sp|Q55GG6|ERCC1_DICDI DNA excision repair protein ERCC-1 OS=Dictyostelium discoideum
GN=ercc1 PE=3 SV=1
Length = 514
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 71 ILVNPRQKGNPLLKHIGK-VPWEYDDSIIPDYVMGRTTCALFL-SIKYHALKPDYIADRI 128
I N +Q+G+ ++ K + EY + PD+++ T +L S+K H P+ I DRI
Sbjct: 217 IYANSKQRGSLMMNSFSKNIIIEYSELQYPDFILNSNTLVFYLPSLKTHRDNPNLIQDRI 276
Query: 129 KALGKL------YKLQV--------DSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEM 174
K L L + L++ DS + + L + + TL++ WS EA +
Sbjct: 277 KGLSTLMTNSDSFTLRILLVFADLSDSDNCEQFINELNLIAIKLQFTLIVCWSQIEAAKY 336
Query: 175 IETYKVFENKPPDLI 189
+E YK F N+ PD I
Sbjct: 337 LEAYKTFNNRAPDPI 351
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLI 27
++ WS EA + +E YK F N+ PD I
Sbjct: 325 IVCWSQIEAAKYLEAYKTFNNRAPDPI 351
>sp|P03412|YPX1_BLVJ Putative uncharacterized protein PXBL-I (Fragment) OS=Bovine
leukemia virus (isolate Japanese BLV-1) PE=4 SV=1
Length = 308
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 11/167 (6%)
Query: 38 KTWNFDPVPAAQNSATSESVQPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSI 97
+ W P+PA + S+ P + L + G P++ H G +PW +++
Sbjct: 85 RLWINCPLPAVRAQPGPVSLSPFERSPFQPYQCQLPSASSDGCPIIGH-GLLPW---NNL 140
Query: 98 IPDYVMGRTTCALFLSIKYHALKPDYIADRIKALGKLYKLQVDSKDPHHALKYLTRVCLL 157
+ V+G+ + + +L P + + L +L V + D A++YL+ + L
Sbjct: 141 VTHPVLGKVL--ILNQMANFSLLPSFDTLLVDPL----RLSVFAPDTRGAIRYLSTLLTL 194
Query: 158 CDLTLMLAWS-PEEAGEMIETYKVFENKPPDLIMEKQDVDPHSKTWN 203
C T +L P I + N+PP E + +W+
Sbjct: 195 CPATCILPLGEPFSPNVPICRFPRDSNEPPLSEFELPPIQTPGLSWS 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,075,797
Number of Sequences: 539616
Number of extensions: 3329523
Number of successful extensions: 7798
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7770
Number of HSP's gapped (non-prelim): 19
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)