Query psy15374
Match_columns 205
No_of_seqs 177 out of 268
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:15:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a1i_A DNA excision repair pro 100.0 3.3E-61 1.1E-65 391.1 12.0 129 64-193 13-146 (146)
2 2bgw_A XPF endonuclease; hydro 99.6 5.6E-16 1.9E-20 130.0 8.2 116 66-186 6-141 (219)
3 1j23_A HEF nuclease, ATP-depen 85.7 2.5 8.5E-05 33.0 7.0 110 70-184 6-134 (143)
4 2bgw_A XPF endonuclease; hydro 84.5 0.12 4.1E-06 42.6 -1.2 24 1-24 118-141 (219)
5 2ziu_A MUS81 protein; helix-ha 47.2 1.3E+02 0.0045 25.4 9.9 113 68-182 19-178 (311)
6 3eod_A Protein HNR; response r 39.2 56 0.0019 22.3 5.1 33 143-175 15-47 (130)
7 2yqk_A Arginine-glutamic acid 33.9 14 0.00047 24.9 1.0 27 164-191 10-36 (63)
8 3hdv_A Response regulator; PSI 32.1 75 0.0026 21.8 4.9 33 145-177 17-49 (136)
9 2crg_A Metastasis associated p 28.7 19 0.00064 24.8 1.0 27 164-191 9-35 (70)
10 1pd7_B MAD1; PAH2, SIN3, eukar 28.3 23 0.00078 20.5 1.2 10 169-178 9-18 (26)
11 3jte_A Response regulator rece 28.2 1.2E+02 0.004 21.0 5.4 34 143-176 11-44 (143)
12 3jr2_A Hexulose-6-phosphate sy 27.3 2.3E+02 0.0079 22.4 8.6 66 109-176 61-130 (218)
13 2qvg_A Two component response 27.1 61 0.0021 22.5 3.6 35 143-177 15-51 (143)
14 3gl9_A Response regulator; bet 26.0 1.1E+02 0.0038 20.8 4.8 34 143-176 10-43 (122)
15 3i42_A Response regulator rece 25.4 1.2E+02 0.0042 20.4 5.0 35 143-177 11-45 (127)
16 3ilh_A Two component response 25.2 1.6E+02 0.0055 20.1 5.6 33 146-178 20-54 (146)
17 2eqr_A N-COR1, N-COR, nuclear 24.4 48 0.0016 21.8 2.5 27 163-190 12-38 (61)
18 3zqo_A Terminase small subunit 24.4 48 0.0016 23.1 2.5 32 122-158 5-36 (72)
19 1zud_1 Adenylyltransferase THI 24.3 77 0.0026 26.1 4.2 35 133-167 117-151 (251)
20 3gt7_A Sensor protein; structu 23.1 1.3E+02 0.0046 21.3 5.0 33 143-175 15-47 (154)
21 3h5i_A Response regulator/sens 22.8 1.4E+02 0.0048 20.7 4.9 28 148-175 18-45 (140)
22 1mb3_A Cell division response 22.8 1.6E+02 0.0056 19.5 5.1 30 147-176 13-42 (124)
23 2zix_A Crossover junction endo 22.6 1.7E+02 0.0059 24.7 6.3 117 63-184 19-177 (307)
24 2pln_A HP1043, response regula 22.2 1.6E+02 0.0056 20.1 5.1 35 143-177 26-60 (137)
25 2gkg_A Response regulator homo 22.1 1.6E+02 0.0054 19.4 4.9 19 158-176 28-46 (127)
26 3c3m_A Response regulator rece 21.9 1.6E+02 0.0055 20.3 5.1 34 143-176 11-44 (138)
27 3lte_A Response regulator; str 21.6 1.7E+02 0.0058 19.7 5.1 31 146-176 17-47 (132)
28 3f6p_A Transcriptional regulat 21.6 1.6E+02 0.0054 19.8 4.9 32 145-176 12-43 (120)
29 1y8q_A Ubiquitin-like 1 activa 20.7 82 0.0028 27.4 3.9 33 134-166 125-157 (346)
No 1
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=100.00 E-value=3.3e-61 Score=391.06 Aligned_cols=129 Identities=60% Similarity=1.136 Sum_probs=120.9
Q ss_pred CCCCCCeEEeCCcccCCcccccccccceeecCCCCcceeecCceeEEEEeecccccChhHHHHHHHhhcccceE-----E
Q psy15374 64 ASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYHALKPDYIADRIKALGKLYKL-----Q 138 (205)
Q Consensus 64 ~~~~~~~I~Vs~~QkGNPlL~~i~~vpwe~~d~i~~Dy~ig~~~~vLFLSLkyH~L~P~YI~~Ri~~L~~~y~l-----~ 138 (205)
.+.++++|+||++|||||||++||||||||+| |+|||++|+++||||||||||+|||+||++||++|+++|.+ +
T Consensus 13 ~~~~~~~IlVs~rQkGNPlL~~irnv~we~~d-I~~Dyvvg~~tcvLFLSLkYH~L~PeYI~~Ri~~L~~~y~lrVLL~~ 91 (146)
T 2a1i_A 13 DPAKSNSIIVSPRQRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQ 91 (146)
T ss_dssp -----CCEEECGGGTTCGGGGGCCSSCEEECC-CSSSEEEETTEEEEEEEHHHHHHSTTHHHHHHHHHTTSSSEEEEEEE
T ss_pred CCCCCceEEECchhcCChHHHHHhcCCeEecC-cCCCEEecCeeEEEEEecHHhccCHHHHHHHHHHhccccceEEEEEE
Confidence 44578899999999999999999999999976 99999999999999999999999999999999999999864 9
Q ss_pred EcCCChHHHHHHHHHHHHhcCcEEEeecChHHHHHHHHHHHhhhCCCcchhcccc
Q psy15374 139 VDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEKQ 193 (205)
Q Consensus 139 VDv~d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie~~K~~e~k~~d~i~~~~ 193 (205)
|||+|++++|+|||++|+.+|||||||||+||||+|||+||+||+||+|+||++.
T Consensus 92 VDv~d~~~~L~eL~~~c~~~~~TLiLawS~eEaa~Yle~~k~~e~k~~d~i~~~~ 146 (146)
T 2a1i_A 92 VDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKL 146 (146)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHHHTCCSSCCCHHHHHC
T ss_pred EeCCChHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHHHHHhccCChhHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999873
No 2
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=99.62 E-value=5.6e-16 Score=130.01 Aligned_cols=116 Identities=14% Similarity=0.181 Sum_probs=100.5
Q ss_pred CCCCeEEeCCcccCCcccccccc--cceeecCCCCcceeecCceeE------EEE-eecccccChhHHHHHHHhhcccce
Q psy15374 66 KSSNAILVNPRQKGNPLLKHIGK--VPWEYDDSIIPDYVMGRTTCA------LFL-SIKYHALKPDYIADRIKALGKLYK 136 (205)
Q Consensus 66 ~~~~~I~Vs~~QkGNPlL~~i~~--vpwe~~d~i~~Dy~ig~~~~v------LFL-SLkyH~L~P~YI~~Ri~~L~~~y~ 136 (205)
...-.|+|+.||+|||+++++++ |+|++..-.++||++|...|| .|+ ||+++ ++++|++.|.+.|.
T Consensus 6 ~~~~~iivD~RE~~s~~~~~l~~~gv~~~~~~L~vgDy~~~~~~~VERKs~~Dl~~Si~~~-----Rl~~Q~~~l~~~~~ 80 (219)
T 2bgw_A 6 GGRPRVYVDVREERSPVPSILESLGVQVIPKQLPMGDYLVSDSIIVERKTSSDFAKSLFDG-----RLFEQASRLAEHYE 80 (219)
T ss_dssp CSSCEEEEETTTTTSSHHHHHHHTTCEEEEECCSSSSEEEETTEEEEEEEHHHHHHHHHHS-----HHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCcccHhHHHHHhCCCEEEEEEcCcCCEEeeCCeEEEeCCHHHHHHHhhcC-----cHHHHHHHHHHhcC
Confidence 34568999999999999999876 999998756899999997665 677 89995 68899999987664
Q ss_pred -----EEEcCCC------hHHHHHHHHHHHHhcCcEEEeecChHHHHHHHHHHHhhhCCCc
Q psy15374 137 -----LQVDSKD------PHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENKPP 186 (205)
Q Consensus 137 -----l~VDv~d------~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie~~K~~e~k~~ 186 (205)
+.+|..+ +++++..|+.+|+..+++++.+||++|+|+||+.++.+++++.
T Consensus 81 ~~~lliE~d~~~~~~~~~~~~i~~~l~~~~~~~~~~vi~t~s~~eta~~l~~l~~~~~~~~ 141 (219)
T 2bgw_A 81 TVFIIVEGPPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALVIESLARLSTREG 141 (219)
T ss_dssp EEEEEEESCSSCGGGTTTHHHHHHHHHHHHHHSCCEEEEESSHHHHHHHHHHHHHHHSCBC
T ss_pred CcEEEEEecCccccccCCHHHHHHHHHHHHHHCCceEEEcCCHHHHHHHHHHHHHhccccc
Confidence 3677777 8899999999999999999999999999999999999997653
No 3
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=85.68 E-value=2.5 Score=33.00 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=75.4
Q ss_pred eEEeCCcccCCcccccc--cccceeecCCCCcceeecCceeE-------EEEeecccccChhHHHHHHHhhcccce----
Q psy15374 70 AILVNPRQKGNPLLKHI--GKVPWEYDDSIIPDYVMGRTTCA-------LFLSIKYHALKPDYIADRIKALGKLYK---- 136 (205)
Q Consensus 70 ~I~Vs~~QkGNPlL~~i--~~vpwe~~d~i~~Dy~ig~~~~v-------LFLSLkyH~L~P~YI~~Ri~~L~~~y~---- 136 (205)
.|+|-.|.....+...+ ++++.+...--+.||+++...|| |--|++.-+ +++.+..|.+.|.
T Consensus 6 ~IiVD~RE~~s~~~~~L~~~gv~~~~~~L~vGDyi~~~~~~VERKs~~DL~~Si~dgR-----l~~Q~~rL~~~~~~~~~ 80 (143)
T 1j23_A 6 KVVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDYIISEDVAIERKSANDLIQSIIDGG-----LFDQVKRLKEAYSRPIM 80 (143)
T ss_dssp EEEEEGGGTTSHHHHHHHHTTCEEEEECCSSCSEECSSSEEEEEEEHHHHHHHHHTTC-----HHHHHHHHHHHCSEEEE
T ss_pred EEEEECCCcchHhHHHHHHCCCeEEEEECCCCCEEecCCcEEEeccHHHHHHhhhcch-----HHHHHHHHHhcCCccEE
Confidence 68888886555676666 46788877656689999876666 333555533 3333344433332
Q ss_pred EEE-cCC-----ChHHHHHHHHHHHHhcCcEEEeecChHHHHHHHHHHHhhhCC
Q psy15374 137 LQV-DSK-----DPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENK 184 (205)
Q Consensus 137 l~V-Dv~-----d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie~~K~~e~k 184 (205)
|+- |.. .++.....|..+.+..++.++-+=|++|.|+||..++..|+.
T Consensus 81 LIE~~~~~~~~~~~~~l~~al~~~~~~~g~~vi~t~~~~~Ta~~l~~l~~~~q~ 134 (143)
T 1j23_A 81 IVEGSLYGIRNVHPNAIRGAIAAVTVDFGVPIIFSSTPEETAQYIFLIAKREQE 134 (143)
T ss_dssp EEESCCTTCCSSCHHHHHHHHHHHHHTSCCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCcccccCCHHHHHHHHHHHHHHcCeeEEEcCCHHHHHHHHHHHHHhhcc
Confidence 211 211 356677788888888999999999999999999999887753
No 4
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=84.50 E-value=0.12 Score=42.56 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.9
Q ss_pred CcccCchhhhhhhhhhhhccCCCC
Q psy15374 1 MLAWSPEEAGEMIETYKVFENKPP 24 (205)
Q Consensus 1 ilaWS~eEaarylEtyK~~E~kp~ 24 (205)
+.+||++|+|+||+.++.++.++.
T Consensus 118 i~t~s~~eta~~l~~l~~~~~~~~ 141 (219)
T 2bgw_A 118 MNTMDPKGTALVIESLARLSTREG 141 (219)
T ss_dssp EEESSHHHHHHHHHHHHHHHSCBC
T ss_pred EEcCCHHHHHHHHHHHHHhccccc
Confidence 468999999999999999996654
No 5
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=47.23 E-value=1.3e+02 Score=25.44 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=67.5
Q ss_pred CCeEEeCCcccCC-------cccccc--cccceeecCCCCccee--ecCce-------------------eE-------E
Q psy15374 68 SNAILVNPRQKGN-------PLLKHI--GKVPWEYDDSIIPDYV--MGRTT-------------------CA-------L 110 (205)
Q Consensus 68 ~~~I~Vs~~QkGN-------PlL~~i--~~vpwe~~d~i~~Dy~--ig~~~-------------------~v-------L 110 (205)
.-.|+|-.|-..+ -+++.+ +.|+++...--+.||+ +.... +| |
T Consensus 19 ~~~ivvD~RE~~~~~~~~~~~~~~~l~~~gv~~~~~~L~vGDyiw~~~~~~~~~~~~~~~~~~~e~vl~~~VERK~~~Dl 98 (311)
T 2ziu_A 19 DIVLCVDLCETTGGSSVRKQELVKELQRNSVTFDVRKLNVGDFLWVARERVTPVPGQLRPPVGKELVLDYIIERKRMDDL 98 (311)
T ss_dssp EEEEEECGGGSCC-----CCHHHHHHHTTTCCEECCCCSSCSEEEEEEECCCCCTTCSSCCCCCEEEEEEEEEEEEHHHH
T ss_pred EEEEEEECccccCCccchHHHHHHHHHHCCCCeEEEecCccCEEEEEecCCCccccccccccCceeeeeeEeEeccHHHH
Confidence 3457787774333 355555 3688888776679999 53211 11 1
Q ss_pred EEeecccccChhHHHHHHHhhcc-cceEEEc-C-C-------ChHHHHHHHHHHHHhcCcEEEeecChHHHHHHHHHHHh
Q psy15374 111 FLSIKYHALKPDYIADRIKALGK-LYKLQVD-S-K-------DPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKV 180 (205)
Q Consensus 111 FLSLkyH~L~P~YI~~Ri~~L~~-~y~l~VD-v-~-------d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie~~K~ 180 (205)
--|++..+++-+ ..||+.-|- +..++|- . . +++.+..-|..+-+..++.++-+-|++|.|+||..++.
T Consensus 99 ~~Si~dgR~~~Q--~~rl~~~g~~~~~ylIE~~~~~~~~~~~~~~~i~~aL~~l~v~~g~~Vi~t~s~~eTa~~l~~lt~ 176 (311)
T 2ziu_A 99 CGSIIDGRFREQ--KFRLKRCGLRKPIYLVEECGSAAAHLSIPESTLQQAIVNTQVVDGFFVKRVQDAKESAAYLTIMTR 176 (311)
T ss_dssp HHHHHHTCHHHH--HHHHHTTSCSEEEEEEESCSSSHHHHSSCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHH--HHHHHhCCCCCeEEEEecCCccccccCCCHHHHHHHHHHHhhhcCeEEEEeCCHHHHHHHHHHHHH
Confidence 115555444322 244444311 1112332 1 1 23455566777878899999999999999999999886
Q ss_pred hh
Q psy15374 181 FE 182 (205)
Q Consensus 181 ~e 182 (205)
..
T Consensus 177 ~i 178 (311)
T 2ziu_A 177 YL 178 (311)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 6
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=39.21 E-value=56 Score=22.34 Aligned_cols=33 Identities=21% Similarity=0.054 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHHhcCcEEEeecChHHHHHHH
Q psy15374 143 DPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMI 175 (205)
Q Consensus 143 d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yi 175 (205)
|.......|..+.-..++.+..+-+.+||-+.+
T Consensus 15 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l 47 (130)
T 3eod_A 15 DEQVFRSLLDSWFSSLGATTVLAADGVDALELL 47 (130)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH
Confidence 333444444444555677777788888877666
No 7
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.87 E-value=14 Score=24.86 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=20.9
Q ss_pred eecChHHHHHHHHHHHhhhCCCcchhcc
Q psy15374 164 LAWSPEEAGEMIETYKVFENKPPDLIME 191 (205)
Q Consensus 164 lawS~eEaa~Yie~~K~~e~k~~d~i~~ 191 (205)
--||.||...+.+.+..|.. .-..|..
T Consensus 10 ~~WT~eE~~~Fe~~l~~yGK-df~~I~~ 36 (63)
T 2yqk_A 10 KCWTEDEVKRFVKGLRQYGK-NFFRIRK 36 (63)
T ss_dssp CSCCHHHHHHHHHHHHHTCS-CHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCc-cHHHHHH
Confidence 36999999999999999877 3444443
No 8
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.11 E-value=75 Score=21.83 Aligned_cols=33 Identities=15% Similarity=-0.102 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCcEEEeecChHHHHHHHHH
Q psy15374 145 HHALKYLTRVCLLCDLTLMLAWSPEEAGEMIET 177 (205)
Q Consensus 145 ~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie~ 177 (205)
......|.......++.+..+.+.+||...+..
T Consensus 17 ~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~ 49 (136)
T 3hdv_A 17 AVNREALILYLKSRGIDAVGADGAEEARLYLHY 49 (136)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh
Confidence 334444444444467788888888888777654
No 9
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=28.70 E-value=19 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=21.4
Q ss_pred eecChHHHHHHHHHHHhhhCCCcchhcc
Q psy15374 164 LAWSPEEAGEMIETYKVFENKPPDLIME 191 (205)
Q Consensus 164 lawS~eEaa~Yie~~K~~e~k~~d~i~~ 191 (205)
-.||.||.....+.+..|.. .-..|..
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGK-df~~I~~ 35 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGK-DFNDIRQ 35 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCS-CHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHH
Confidence 46999999999999999876 3555554
No 10
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=28.33 E-value=23 Score=20.53 Aligned_cols=10 Identities=30% Similarity=0.355 Sum_probs=8.1
Q ss_pred HHHHHHHHHH
Q psy15374 169 EEAGEMIETY 178 (205)
Q Consensus 169 eEaa~Yie~~ 178 (205)
-|||.|||.-
T Consensus 9 LeAAeyLErr 18 (26)
T 1pd7_B 9 LEAADYLERR 18 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4899999954
No 11
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=28.18 E-value=1.2e+02 Score=20.99 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHHHHhcCcEEEeecChHHHHHHHH
Q psy15374 143 DPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIE 176 (205)
Q Consensus 143 d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie 176 (205)
|.......|..+....++.+..+-+.+||-+.+.
T Consensus 11 d~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~ 44 (143)
T 3jte_A 11 DESTILQNIKFLLEIDGNEVLTASSSTEGLRIFT 44 (143)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHH
Confidence 3334444444444456777777778888777665
No 12
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=27.34 E-value=2.3e+02 Score=22.38 Aligned_cols=66 Identities=9% Similarity=0.085 Sum_probs=45.3
Q ss_pred EEEEeecccccChhHHHHHHHhhcccceEEEcCCChHHHHHHHHHHHHhcCcEEEe----ecChHHHHHHHH
Q psy15374 109 ALFLSIKYHALKPDYIADRIKALGKLYKLQVDSKDPHHALKYLTRVCLLCDLTLML----AWSPEEAGEMIE 176 (205)
Q Consensus 109 vLFLSLkyH~L~P~YI~~Ri~~L~~~y~l~VDv~d~~~~L~eL~~~c~~~~~TLil----awS~eEaa~Yie 176 (205)
-+|+-+|.| -.|++.-+...+.|-.+... ......+.+.++-+.|-..|+..++ ..|++|+..+.+
T Consensus 61 ~i~ld~~l~-d~p~~~~~~~~~aGad~i~v-h~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~~~~~~~~~ 130 (218)
T 3jr2_A 61 ILVCDMKTT-DGGAILSRMAFEAGADWITV-SAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVD 130 (218)
T ss_dssp EEEEEEEEC-SCHHHHHHHHHHHTCSEEEE-ETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHHHHHH
T ss_pred cEEEEEeec-ccHHHHHHHHHhcCCCEEEE-ecCCCHHHHHHHHHHHHHhCCccceeeeecCCHHHHHHHHH
Confidence 567788888 67988778888888655443 4344456677777777777876653 257777776655
No 13
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=27.07 E-value=61 Score=22.47 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHhcCc--EEEeecChHHHHHHHHH
Q psy15374 143 DPHHALKYLTRVCLLCDL--TLMLAWSPEEAGEMIET 177 (205)
Q Consensus 143 d~~~~L~eL~~~c~~~~~--TLilawS~eEaa~Yie~ 177 (205)
|.......|.......++ .+..+-+.+||-.+++.
T Consensus 15 d~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~ 51 (143)
T 2qvg_A 15 DDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYG 51 (143)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHh
Confidence 334444444444444565 77788888888877764
No 14
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=25.98 E-value=1.1e+02 Score=20.83 Aligned_cols=34 Identities=15% Similarity=-0.079 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHhcCcEEEeecChHHHHHHHH
Q psy15374 143 DPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIE 176 (205)
Q Consensus 143 d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie 176 (205)
|.......|....-..++.+..+-+.+||-++++
T Consensus 10 d~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~ 43 (122)
T 3gl9_A 10 DSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS 43 (122)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH
Confidence 3344444444444556788888888888866653
No 15
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=25.41 E-value=1.2e+02 Score=20.40 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHhcCcEEEeecChHHHHHHHHH
Q psy15374 143 DPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIET 177 (205)
Q Consensus 143 d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie~ 177 (205)
|.......|..+.-..++.+..+-+.+||-+.++.
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~ 45 (127)
T 3i42_A 11 DYQAAAETFKELLEMLGFQADYVMSGTDALHAMST 45 (127)
T ss_dssp SCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh
Confidence 33444444455545566777777777777766643
No 16
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=25.19 E-value=1.6e+02 Score=20.12 Aligned_cols=33 Identities=9% Similarity=-0.099 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCc--EEEeecChHHHHHHHHHH
Q psy15374 146 HALKYLTRVCLLCDL--TLMLAWSPEEAGEMIETY 178 (205)
Q Consensus 146 ~~L~eL~~~c~~~~~--TLilawS~eEaa~Yie~~ 178 (205)
.....|..+-...++ .+..+-+.+||-+.++..
T Consensus 20 ~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~ 54 (146)
T 3ilh_A 20 IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNEL 54 (146)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHh
Confidence 334444444444666 677777888887777653
No 17
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.44 E-value=48 Score=21.79 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=21.1
Q ss_pred EeecChHHHHHHHHHHHhhhCCCcchhc
Q psy15374 163 MLAWSPEEAGEMIETYKVFENKPPDLIM 190 (205)
Q Consensus 163 ilawS~eEaa~Yie~~K~~e~k~~d~i~ 190 (205)
+-.||.||....++.+..|-+ .-..|.
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk-~w~~Ia 38 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPK-NFGLIA 38 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHH
Confidence 457999999999999999974 344443
No 18
>3zqo_A Terminase small subunit; DNA-binding protein, molecular motor, DNA packaging; 1.68A {Bacillus phage SF6} PDB: 3zqn_A 3zqm_A
Probab=24.43 E-value=48 Score=23.06 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=16.7
Q ss_pred hHHHHHHHhhcccceEEEcCCChHHHHHHHHHHHHhc
Q psy15374 122 DYIADRIKALGKLYKLQVDSKDPHHALKYLTRVCLLC 158 (205)
Q Consensus 122 ~YI~~Ri~~L~~~y~l~VDv~d~~~~L~eL~~~c~~~ 158 (205)
+||..|++++... -+-+.+++|..|+.+....
T Consensus 5 ~YI~erm~ei~~~-----~Ia~~~EvLe~LT~iaRGe 36 (72)
T 3zqo_A 5 ARIDARLKEINEK-----KILQANEVLEHLTRIALGQ 36 (72)
T ss_dssp ----------CCC-----CCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHcCC
Confidence 7999999999853 2457799999999998763
No 19
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=24.31 E-value=77 Score=26.09 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=29.5
Q ss_pred ccceEEEcCCChHHHHHHHHHHHHhcCcEEEeecC
Q psy15374 133 KLYKLQVDSKDPHHALKYLTRVCLLCDLTLMLAWS 167 (205)
Q Consensus 133 ~~y~l~VDv~d~~~~L~eL~~~c~~~~~TLilawS 167 (205)
+.+.++||..|..+....|++.|...+..+|.++.
T Consensus 117 ~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 151 (251)
T 1zud_1 117 ARADVVLDCTDNMATRQEINAACVALNTPLITASA 151 (251)
T ss_dssp HHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 35778999989888899999999999888887764
No 20
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.09 E-value=1.3e+02 Score=21.32 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHHhcCcEEEeecChHHHHHHH
Q psy15374 143 DPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMI 175 (205)
Q Consensus 143 d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yi 175 (205)
|.......|..+....++.+..+-+.+||-+.+
T Consensus 15 d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 47 (154)
T 3gt7_A 15 DSPTQAEHLKHILEETGYQTEHVRNGREAVRFL 47 (154)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 334444444444445677777777777776655
No 21
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=22.78 E-value=1.4e+02 Score=20.71 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCcEEEeecChHHHHHHH
Q psy15374 148 LKYLTRVCLLCDLTLMLAWSPEEAGEMI 175 (205)
Q Consensus 148 L~eL~~~c~~~~~TLilawS~eEaa~Yi 175 (205)
...|..+....++.+..+-+.+||-..+
T Consensus 18 ~~~l~~~L~~~g~~v~~~~~~~~a~~~l 45 (140)
T 3h5i_A 18 AKTIANILNKYGYTVEIALTGEAAVEKV 45 (140)
T ss_dssp HHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEecChHHHHHHH
Confidence 3333333334556666666666665544
No 22
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=22.77 E-value=1.6e+02 Score=19.50 Aligned_cols=30 Identities=7% Similarity=-0.039 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCcEEEeecChHHHHHHHH
Q psy15374 147 ALKYLTRVCLLCDLTLMLAWSPEEAGEMIE 176 (205)
Q Consensus 147 ~L~eL~~~c~~~~~TLilawS~eEaa~Yie 176 (205)
....|..+....++.+..+-+.+||-++++
T Consensus 13 ~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~ 42 (124)
T 1mb3_A 13 NMKLFHDLLEAQGYETLQTREGLSALSIAR 42 (124)
T ss_dssp HHHHHHHHHHHTTCEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcEEEEeCCHHHHHHHHh
Confidence 333333333344555555555555555543
No 23
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=22.56 E-value=1.7e+02 Score=24.75 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=70.8
Q ss_pred CCCCCCCeEEeCCcccCC-----ccccccc--ccceeecCCCCcceee--cCc--------------eeE-------EEE
Q psy15374 63 GASKSSNAILVNPRQKGN-----PLLKHIG--KVPWEYDDSIIPDYVM--GRT--------------TCA-------LFL 112 (205)
Q Consensus 63 ~~~~~~~~I~Vs~~QkGN-----PlL~~i~--~vpwe~~d~i~~Dy~i--g~~--------------~~v-------LFL 112 (205)
.++.-.-.|+|-.|-..+ -+++.++ .|+++...--+.||+. .+. .+| |--
T Consensus 19 ~~~~~~~~ivvD~RE~~~~~~~~~~~~~L~~~gv~~~~~~L~vGDyi~i~~~~~~~~~~~~~e~vl~~iVERKs~~Dl~~ 98 (307)
T 2zix_A 19 RPGEYRVLLCVDIGETRGGGHRPELLRELQRLHVTHTVRKLHVGDFVWVAQETNPRDPANPGELVLDHIVERKRLDDLCS 98 (307)
T ss_dssp CTTCCCCCCBCCSSSCCC---CCTTSTTTGGGCCCCCCCCCCSSSBBCCCCCCC----CCCCCCCCSEEECCCCTTTTHH
T ss_pred cCCCCEEEEEEECcccccCcchHHHHHHHHHCCCCeEEEeCCCCCEEEEEecCCCCcccccceeeeeeeeeeeeHHHHHH
Confidence 344444567777775433 5666664 5777776656789985 332 222 112
Q ss_pred eecccccChhHHHHHHHhhccc-ce---EEEcCC--------ChHHHHHHHHHHHHhcCcEEEeecChHHHHHHHHHHHh
Q psy15374 113 SIKYHALKPDYIADRIKALGKL-YK---LQVDSK--------DPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKV 180 (205)
Q Consensus 113 SLkyH~L~P~YI~~Ri~~L~~~-y~---l~VDv~--------d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie~~K~ 180 (205)
|++..+ +++....|.+. |. ++|--. +++.+..-|..+-+..++.++-+-|.+|.|+||..++.
T Consensus 99 Si~dgR-----l~~Q~~rl~~~g~~~~~ylIE~~~~~~~~~~~~~~i~~al~~l~~~~~~~i~~t~~~~~Ta~~l~~lt~ 173 (307)
T 2zix_A 99 SIIDGR-----FREQKFRLKRCGLERRVYLVEEHGSVHNLSLPESTLLQAVTNTQVIDGFFVKRTADIKESAAYLALLTR 173 (307)
T ss_dssp HHSSSH-----HHHHTTTTCTTTCBEEECCBSCCCSSSSCSSCHHHHHHHHHHHHHSSCCCCCBCCSHHHHTHHHHHHHT
T ss_pred HhcCCc-----HHHHHHHHHhCCCCCeEEEEecCCcccccCCCHHHHHHHHHHHhhhcCeEEEEeCCHHHHHHHHHHHHH
Confidence 555433 34444555553 43 122211 23455556666666789999999999999999999988
Q ss_pred hhCC
Q psy15374 181 FENK 184 (205)
Q Consensus 181 ~e~k 184 (205)
....
T Consensus 174 ~l~e 177 (307)
T 2zix_A 174 GLQR 177 (307)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 7653
No 24
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=22.17 E-value=1.6e+02 Score=20.12 Aligned_cols=35 Identities=6% Similarity=-0.087 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHhcCcEEEeecChHHHHHHHHH
Q psy15374 143 DPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIET 177 (205)
Q Consensus 143 d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie~ 177 (205)
|.......|..+.-..++.+..+-+.+||-..++.
T Consensus 26 d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~ 60 (137)
T 2pln_A 26 KNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI 60 (137)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc
Confidence 44444444455444567788888888888777653
No 25
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=22.13 E-value=1.6e+02 Score=19.44 Aligned_cols=19 Identities=16% Similarity=-0.004 Sum_probs=9.1
Q ss_pred cCcEEEeecChHHHHHHHH
Q psy15374 158 CDLTLMLAWSPEEAGEMIE 176 (205)
Q Consensus 158 ~~~TLilawS~eEaa~Yie 176 (205)
.++.+..+-+.+||-++++
T Consensus 28 ~g~~v~~~~~~~~a~~~~~ 46 (127)
T 2gkg_A 28 RGFTVDETTDGKGSVEQIR 46 (127)
T ss_dssp HTCEEEEECCHHHHHHHHH
T ss_pred cCceEEEecCHHHHHHHHH
Confidence 4444445555555544443
No 26
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=21.89 E-value=1.6e+02 Score=20.31 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHhcCcEEEeecChHHHHHHHH
Q psy15374 143 DPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIE 176 (205)
Q Consensus 143 d~~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie 176 (205)
|.......|..+....++.++.+-+.+||-+.++
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 44 (138)
T 3c3m_A 11 DSPMIVDVFVTMLERGGYRPITAFSGEECLEALN 44 (138)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh
Confidence 3333334444444445666666666666666554
No 27
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.64 E-value=1.7e+02 Score=19.73 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCcEEEeecChHHHHHHHH
Q psy15374 146 HALKYLTRVCLLCDLTLMLAWSPEEAGEMIE 176 (205)
Q Consensus 146 ~~L~eL~~~c~~~~~TLilawS~eEaa~Yie 176 (205)
.....|..+....++.+..+-+.+||-+.++
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~ 47 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVEIAHNGFDAGIKLS 47 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH
Confidence 3333444444446677777777777766654
No 28
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.58 E-value=1.6e+02 Score=19.84 Aligned_cols=32 Identities=22% Similarity=0.051 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCcEEEeecChHHHHHHHH
Q psy15374 145 HHALKYLTRVCLLCDLTLMLAWSPEEAGEMIE 176 (205)
Q Consensus 145 ~~~L~eL~~~c~~~~~TLilawS~eEaa~Yie 176 (205)
......|....-..++.+..+-+.+||-+.++
T Consensus 12 ~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~ 43 (120)
T 3f6p_A 12 KPIADILEFNLRKEGYEVHCAHDGNEAVEMVE 43 (120)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh
Confidence 33333344444445677777777777765553
No 29
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=20.68 E-value=82 Score=27.41 Aligned_cols=33 Identities=3% Similarity=0.067 Sum_probs=28.8
Q ss_pred cceEEEcCCChHHHHHHHHHHHHhcCcEEEeec
Q psy15374 134 LYKLQVDSKDPHHALKYLTRVCLLCDLTLMLAW 166 (205)
Q Consensus 134 ~y~l~VDv~d~~~~L~eL~~~c~~~~~TLilaw 166 (205)
.|.++||..|..+....|+..|..++.-+|.+.
T Consensus 125 ~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~ 157 (346)
T 1y8q_A 125 QFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGD 157 (346)
T ss_dssp TCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 467899999999999999999999998888763
Done!