Your job contains 1 sequence.
>psy15374
MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVDPHSKTWNFDPVPAAQNSATSESVQPS
RAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYHALK
PDYIADRIKALGKLYKLQVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKV
FENKPPDLIMEKQDVDPHSKTWNFG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15374
(205 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0028434 - symbol:Ercc1 "Ercc1" species:7227 "Droso... 465 3.9e-44 1
UNIPROTKB|F1PPD0 - symbol:ERCC1 "Uncharacterized protein"... 444 6.6e-42 1
ZFIN|ZDB-GENE-040426-2606 - symbol:ercc1 "excision repair... 435 5.9e-41 1
UNIPROTKB|Q1LZ75 - symbol:ERCC1 "DNA excision repair prot... 432 1.2e-40 1
UNIPROTKB|K7EP14 - symbol:ERCC1 "DNA excision repair prot... 428 3.3e-40 1
UNIPROTKB|K7ER89 - symbol:ERCC1 "DNA excision repair prot... 428 3.3e-40 1
UNIPROTKB|P07992 - symbol:ERCC1 "DNA excision repair prot... 428 3.3e-40 1
UNIPROTKB|Q6UIQ5 - symbol:ERCC1 "Excision repair protein"... 428 3.3e-40 1
MGI|MGI:95412 - symbol:Ercc1 "excision repair cross-compl... 425 6.8e-40 1
RGD|1306992 - symbol:Ercc1 "excision repair cross-complem... 425 6.8e-40 1
UNIPROTKB|Q9QYP5 - symbol:ERCC1 "ERCC1 protein" species:1... 412 1.6e-38 1
UNIPROTKB|B3KRR0 - symbol:ERCC1 "cDNA FLJ34720 fis, clone... 392 2.1e-36 1
UNIPROTKB|K7ES46 - symbol:ERCC1 "DNA excision repair prot... 392 2.1e-36 1
POMBASE|SPBC4F6.15c - symbol:swi10 "DNA repair endonuclea... 363 2.5e-33 1
TAIR|locus:2096329 - symbol:ERCC1 species:3702 "Arabidops... 350 6.0e-32 1
UNIPROTKB|K7ER60 - symbol:ERCC1 "DNA excision repair prot... 330 7.9e-30 1
ASPGD|ASPL0000074569 - symbol:AN4331 species:162425 "Emer... 303 5.7e-27 1
GENEDB_PFALCIPARUM|PFB0160w - symbol:PFB0160w "ERCC1 nucl... 212 2.5e-17 1
UNIPROTKB|I3LFQ1 - symbol:ERCC1 "Uncharacterized protein"... 212 2.5e-17 1
UNIPROTKB|O96136 - symbol:PFB0160w "ERCC1 nucleotide exci... 212 2.5e-17 1
WB|WBGene00008665 - symbol:ercc-1 species:6239 "Caenorhab... 194 2.0e-15 1
CGD|CAL0001589 - symbol:RAD10 species:5476 "Candida albic... 183 8.0e-14 1
UNIPROTKB|Q5AA15 - symbol:RAD10 "Putative uncharacterized... 183 8.0e-14 1
UNIPROTKB|K7EK97 - symbol:ERCC1 "DNA excision repair prot... 171 5.6e-13 1
SGD|S000004560 - symbol:RAD10 "Single-stranded DNA endonu... 166 1.9e-12 1
UNIPROTKB|K7EJW9 - symbol:ERCC1 "DNA excision repair prot... 153 4.5e-11 1
DICTYBASE|DDB_G0267682 - symbol:ercc1 "DNA excision repai... 154 3.2e-10 1
UNIPROTKB|K7EMT9 - symbol:ERCC1 "DNA excision repair prot... 136 2.9e-09 1
>FB|FBgn0028434 [details] [associations]
symbol:Ercc1 "Ercc1" species:7227 "Drosophila melanogaster"
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=ISS] [GO:0006296 "nucleotide-excision repair,
DNA incision, 5'-to lesion" evidence=ISS] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0043234 "protein
complex" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] InterPro:IPR004579 Pfam:PF03834
ProDom:PD013585 EMBL:AE013599 GO:GO:0005634 GO:GO:0043234
GO:GO:0003684 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004519
GO:GO:0007131 InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG5241
KO:K10849 TIGRFAMs:TIGR00597 CTD:2067 GeneTree:ENSGT00390000011275
GO:GO:0006296 OMA:KQRGNPI EMBL:AF146797 RefSeq:NP_477468.1
UniGene:Dm.23250 SMR:Q7KMG7 IntAct:Q7KMG7 STRING:Q7KMG7
EnsemblMetazoa:FBtr0087448 GeneID:36654 KEGG:dme:Dmel_CG10215
UCSC:CG10215-RA FlyBase:FBgn0028434 InParanoid:Q7KMG7
OrthoDB:EOG4PVMFW GenomeRNAi:36654 NextBio:799713 Uniprot:Q7KMG7
Length = 259
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 92/168 (54%), Positives = 122/168 (72%)
Query: 44 PVPAAQNSATSESVQPSRAG----ASKSSN--AILVNPRQKGNPLLKHIGKVPWEYDDSI 97
P A N A S S +PS +G +SN +LV+ +Q+GNP+LK I VP E+ D I
Sbjct: 30 PAATAVNPAPSNSTEPSGSGRPAPGKPASNPHCVLVHSKQRGNPILKSILNVPLEFRDDI 89
Query: 98 IPDYVMGRTTCALFLSIKYHALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLT 152
+PDYV+GRT+C L+LS+KYH L PDYI R+KALGK+Y+L QVD+ +P++ALK LT
Sbjct: 90 VPDYVVGRTSCVLYLSLKYHNLNPDYICQRLKALGKMYELRVLLVQVDTPEPNNALKSLT 149
Query: 153 RVCLLCDLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVDPHSK 200
R+ LL DLT+MLAW+ EEAG++IETYK FE +PPDLIME+ + +PH K
Sbjct: 150 RISLLADLTMMLAWNAEEAGKIIETYKQFEKRPPDLIMERVESNPHQK 197
Score = 142 (55.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 25/38 (65%), Positives = 32/38 (84%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVDPHSK 38
MLAW+ EEAG++IETYK FE +PPDLIME+ + +PH K
Sbjct: 160 MLAWNAEEAGKIIETYKQFEKRPPDLIMERVESNPHQK 197
>UNIPROTKB|F1PPD0 [details] [associations]
symbol:ERCC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0004519 InterPro:IPR010994 SUPFAM:SSF47781
TIGRFAMs:TIGR00597 GeneTree:ENSGT00390000011275 OMA:HPDYIHQ
EMBL:AAEX03000876 Ensembl:ENSCAFT00000007174 Uniprot:F1PPD0
Length = 323
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 86/159 (54%), Positives = 115/159 (72%)
Query: 44 PVPAAQNSATSESV-QPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYV 102
P P T E+ Q S+ GA SN+I+V+PRQ+GNP+LK + VPWE+ D ++PDYV
Sbjct: 75 PHPTGPEPLTGETPNQASKPGAK--SNSIIVSPRQRGNPVLKFVRNVPWEFGD-VLPDYV 131
Query: 103 MGRTTCALFLSIKYHALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLL 157
+G++TCALFLS++YH L PDYI +R+++LGK + L QVD KDP ALK L ++C+L
Sbjct: 132 LGQSTCALFLSLRYHNLHPDYIHERLQSLGKSFALRVLLVQVDVKDPQQALKELAKMCIL 191
Query: 158 CDLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 196
D TL+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 192 ADCTLVLAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 230
Score = 124 (48.7 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 197 VLAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 230
>ZFIN|ZDB-GENE-040426-2606 [details] [associations]
symbol:ercc1 "excision repair cross-complementing
rodent repair deficiency, complementation group 1" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 ZFIN:ZDB-GENE-040426-2606
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0004519 InterPro:IPR010994 SUPFAM:SSF47781
KO:K10849 TIGRFAMs:TIGR00597 CTD:2067 GeneTree:ENSGT00390000011275
HOVERGEN:HBG051497 EMBL:BX571724 EMBL:BC066697 EMBL:BC152194
IPI:IPI00500105 RefSeq:NP_001096608.1 UniGene:Dr.75544 SMR:Q6NY87
STRING:Q6NY87 Ensembl:ENSDART00000041751 GeneID:100001425
KEGG:dre:100001425 InParanoid:Q6NY87 NextBio:20785034
Uniprot:Q6NY87
Length = 342
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 82/155 (52%), Positives = 110/155 (70%)
Query: 43 DPVPAAQNSATSESVQPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYV 102
D S+ S V P G S N+I+V+PRQ+GNP+LK + VPWE+ + ++PDYV
Sbjct: 117 DQTKGEGQSSESFVVPPHLLG---SGNSIIVSPRQRGNPILKFVRNVPWEFGE-VVPDYV 172
Query: 103 MGRTTCALFLSIKYHALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLL 157
+GRTTCALFLS++YH L P+Y+ +R+K LG+ + L QVD KDPHHALK L R+C++
Sbjct: 173 LGRTTCALFLSVRYHNLNPNYVHERLKQLGQSFSLRILLVQVDVKDPHHALKELARICIM 232
Query: 158 CDLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEK 192
D TL+LAWSPEEAG +ETYK +E KP DL+ E+
Sbjct: 233 ADCTLILAWSPEEAGRYLETYKSYEKKPADLLKEQ 267
Score = 108 (43.1 bits), Expect = 0.00090, P = 0.00090
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEK 30
+LAWSPEEAG +ETYK +E KP DL+ E+
Sbjct: 238 ILAWSPEEAGRYLETYKSYEKKPADLLKEQ 267
>UNIPROTKB|Q1LZ75 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9913 "Bos taurus" [GO:0006295 "nucleotide-excision repair,
DNA incision, 3'-to lesion" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0006312 "mitotic recombination" evidence=ISS]
[GO:0006296 "nucleotide-excision repair, DNA incision, 5'-to
lesion" evidence=ISS] [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0000109 "nucleotide-excision repair complex"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=ISS] [GO:0043566
"structure-specific DNA binding" evidence=ISS] [GO:0032205
"negative regulation of telomere maintenance" evidence=ISS]
[GO:0051276 "chromosome organization" evidence=IEA] [GO:0048477
"oogenesis" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0035166 "post-embryonic hemopoiesis"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006949
"syncytium formation" evidence=IEA] [GO:0006302 "double-strand
break repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0000720
"pyrimidine dimer repair by nucleotide-excision repair"
evidence=IEA] InterPro:IPR000445 InterPro:IPR003583
InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834 ProDom:PD013585
SMART:SM00278 GO:GO:0005737 GO:GO:0043066 GO:GO:0006979
GO:GO:0003684 GO:GO:0008283 GO:GO:0048477 GO:GO:0007283
GO:GO:0001302 GO:GO:0008584 GO:GO:0003697 GO:GO:0007281
GO:GO:0006302 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0035264
GO:GO:0008022 GO:GO:0045190 GO:GO:0010165 GO:GO:0051276
GO:GO:0010259 GO:GO:0000784 GO:GO:0006312 GO:GO:0009650
GO:GO:0006949 GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0000109 eggNOG:COG5241 HOGENOM:HOG000037440 KO:K10849
TIGRFAMs:TIGR00597 EMBL:BC116163 IPI:IPI00717427
RefSeq:NP_001069853.1 UniGene:Bt.6079 ProteinModelPortal:Q1LZ75
SMR:Q1LZ75 STRING:Q1LZ75 PRIDE:Q1LZ75 Ensembl:ENSBTAT00000023078
GeneID:615637 KEGG:bta:615637 CTD:2067 GeneTree:ENSGT00390000011275
HOVERGEN:HBG051497 InParanoid:Q1LZ75 OMA:HPDYIHQ OrthoDB:EOG4R23VJ
NextBio:20899708 GO:GO:0032205 GO:GO:0006295 GO:GO:0006296
GO:GO:0035166 GO:GO:0000720 Uniprot:Q1LZ75
Length = 294
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 84/158 (53%), Positives = 113/158 (71%)
Query: 44 PVPAAQNSATSESVQPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVM 103
P P A+ + Q + GA SN+I+V+PRQ+GNP+L+ + VPWE+ D ++PDYV+
Sbjct: 76 PEPLAEETPN----QAPKPGAK--SNSIIVSPRQRGNPVLRFVRNVPWEFGD-VLPDYVL 128
Query: 104 GRTTCALFLSIKYHALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLC 158
G++TCALFLS++YH L PDYI R+++LGK Y L QVD KDP ALK L ++C+L
Sbjct: 129 GQSTCALFLSLRYHNLHPDYIHQRLQSLGKSYALRVLLVQVDVKDPQQALKELAKMCILA 188
Query: 159 DLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 196
D TL+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 189 DCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 226
Score = 124 (48.7 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 193 ILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 226
>UNIPROTKB|K7EP14 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
InterPro:IPR011335 SUPFAM:SSF52980 TIGRFAMs:TIGR00597 EMBL:AC092309
EMBL:AC138128 EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433
Ensembl:ENST00000592083 Uniprot:K7EP14
Length = 258
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 82/144 (56%), Positives = 108/144 (75%)
Query: 58 QPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYH 117
Q + GA SN+I+V+PRQ+GNP+LK + VPWE+ D +IPDYV+G++TCALFLS++YH
Sbjct: 90 QALKPGAK--SNSIIVSPRQRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFLSLRYH 146
Query: 118 ALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAG 172
L PDYI R+++LGK + L QVD KDP ALK L ++C+L D TL+LAWSPEEAG
Sbjct: 147 NLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAG 206
Query: 173 EMIETYKVFENKPPDLIMEKQDVD 196
+ETYK +E KP DL+MEK + D
Sbjct: 207 RYLETYKAYEQKPADLLMEKLEQD 230
Score = 124 (48.7 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 197 ILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 230
>UNIPROTKB|K7ER89 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
InterPro:IPR011335 SUPFAM:SSF52980 TIGRFAMs:TIGR00597 EMBL:AC092309
EMBL:AC138128 EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433
Ensembl:ENST00000592023 Uniprot:K7ER89
Length = 234
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 82/144 (56%), Positives = 108/144 (75%)
Query: 58 QPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYH 117
Q + GA SN+I+V+PRQ+GNP+LK + VPWE+ D +IPDYV+G++TCALFLS++YH
Sbjct: 90 QALKPGAK--SNSIIVSPRQRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFLSLRYH 146
Query: 118 ALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAG 172
L PDYI R+++LGK + L QVD KDP ALK L ++C+L D TL+LAWSPEEAG
Sbjct: 147 NLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAG 206
Query: 173 EMIETYKVFENKPPDLIMEKQDVD 196
+ETYK +E KP DL+MEK + D
Sbjct: 207 RYLETYKAYEQKPADLLMEKLEQD 230
Score = 124 (48.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 197 ILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 230
>UNIPROTKB|P07992 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0000720 "pyrimidine dimer repair by
nucleotide-excision repair" evidence=IEA] [GO:0001302 "replicative
cell aging" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006949 "syncytium formation" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007584 "response to nutrient"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008584 "male gonad development" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0009744 "response to sucrose
stimulus" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0035166 "post-embryonic hemopoiesis"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0048477 "oogenesis" evidence=IEA] [GO:0048568
"embryonic organ development" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043566 "structure-specific DNA binding"
evidence=IDA] [GO:0032205 "negative regulation of telomere
maintenance" evidence=IMP] [GO:0006296 "nucleotide-excision repair,
DNA incision, 5'-to lesion" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IMP] [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IDA] [GO:0000109 "nucleotide-excision repair complex"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0019904 "protein domain specific binding" evidence=IPI]
[GO:0006289 "nucleotide-excision repair" evidence=IGI;IDA;TAS]
[GO:0006310 "DNA recombination" evidence=IGI] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_216 InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 GO:GO:0005737 GO:GO:0043066
GO:GO:0005654 GO:GO:0006979 GO:GO:0003684 GO:GO:0008283
GO:GO:0009744 GO:GO:0007584 GO:GO:0048477 EMBL:CH471126
GO:GO:0007283 GO:GO:0001302 GO:GO:0008584 GO:GO:0003697
GO:GO:0007281 GO:GO:0006302 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0035264 GO:GO:0004519 GO:GO:0045190 GO:GO:0010165
GO:GO:0051276 GO:GO:0010259 GO:GO:0000784 GO:GO:0006312
GO:GO:0048568 GO:GO:0009650 GO:GO:0006949 GO:GO:0000718
GO:GO:0006283 InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0000109
eggNOG:COG5241 HOGENOM:HOG000037440 KO:K10849 TIGRFAMs:TIGR00597
CTD:2067 HOVERGEN:HBG051497 OMA:HPDYIHQ OrthoDB:EOG4R23VJ
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0035166
GO:GO:0000720 EMBL:M13194 EMBL:M26163 EMBL:M28650 EMBL:AF001925
EMBL:AB069681 EMBL:BT019806 EMBL:AF512555 EMBL:AC092309
EMBL:AC138128 EMBL:AC138534 EMBL:AC139353 EMBL:BC008930
EMBL:BC052813 IPI:IPI00014040 IPI:IPI00045494 IPI:IPI00401902
PIR:A32875 RefSeq:NP_001159521.1 RefSeq:NP_001974.1
RefSeq:NP_973730.1 UniGene:Hs.435981 PDB:1Z00 PDB:2A1I PDB:2A1J
PDB:2JNW PDB:2JPD PDBsum:1Z00 PDBsum:2A1I PDBsum:2A1J PDBsum:2JNW
PDBsum:2JPD ProteinModelPortal:P07992 SMR:P07992 DIP:DIP-24235N
IntAct:P07992 STRING:P07992 PhosphoSite:P07992 DMDM:119538
PRIDE:P07992 DNASU:2067 Ensembl:ENST00000013807
Ensembl:ENST00000300853 Ensembl:ENST00000340192 GeneID:2067
KEGG:hsa:2067 UCSC:uc002pbs.2 GeneCards:GC19M045912 HGNC:HGNC:3433
HPA:CAB004390 HPA:HPA029773 MIM:126380 MIM:610758
neXtProt:NX_P07992 Orphanet:1466 PharmGKB:PA155 ChiTaRS:ERCC1
EvolutionaryTrace:P07992 GenomeRNAi:2067 NextBio:8403
ArrayExpress:P07992 Bgee:P07992 CleanEx:HS_ERCC1
Genevestigator:P07992 GermOnline:ENSG00000012061 Uniprot:P07992
Length = 297
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 82/144 (56%), Positives = 108/144 (75%)
Query: 58 QPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYH 117
Q + GA SN+I+V+PRQ+GNP+LK + VPWE+ D +IPDYV+G++TCALFLS++YH
Sbjct: 90 QALKPGAK--SNSIIVSPRQRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFLSLRYH 146
Query: 118 ALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAG 172
L PDYI R+++LGK + L QVD KDP ALK L ++C+L D TL+LAWSPEEAG
Sbjct: 147 NLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAG 206
Query: 173 EMIETYKVFENKPPDLIMEKQDVD 196
+ETYK +E KP DL+MEK + D
Sbjct: 207 RYLETYKAYEQKPADLLMEKLEQD 230
Score = 124 (48.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 197 ILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 230
>UNIPROTKB|Q6UIQ5 [details] [associations]
symbol:ERCC1 "Excision repair protein" species:9598 "Pan
troglodytes" [GO:0000109 "nucleotide-excision repair complex"
evidence=ISS] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] [GO:0006312 "mitotic
recombination" evidence=ISS] [GO:0006979 "response to oxidative
stress" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0032205 "negative regulation of telomere
maintenance" evidence=ISS] [GO:0000014 "single-stranded DNA
specific endodeoxyribonuclease activity" evidence=ISS] [GO:0043566
"structure-specific DNA binding" evidence=ISS] InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 GO:GO:0005737 GO:GO:0043066
GO:GO:0006979 GO:GO:0003684 GO:GO:0008283 GO:GO:0048477
GO:GO:0007283 GO:GO:0001302 GO:GO:0008584 GO:GO:0003697
GO:GO:0007281 GO:GO:0006302 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0035264 GO:GO:0008022 GO:GO:0045190 GO:GO:0010165
GO:GO:0051276 GO:GO:0010259 GO:GO:0000784 GO:GO:0006312
GO:GO:0009650 GO:GO:0006949 GO:GO:0000014 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0000109 eggNOG:COG5241 HOGENOM:HOG000037440
KO:K10849 TIGRFAMs:TIGR00597 CTD:2067 HOVERGEN:HBG051497
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0035166
GO:GO:0000720 EMBL:AY369808 RefSeq:NP_001181860.1 UniGene:Ptr.6444
ProteinModelPortal:Q6UIQ5 STRING:Q6UIQ5 GeneID:450179
KEGG:ptr:450179 NextBio:20833138 Uniprot:Q6UIQ5
Length = 251
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 82/144 (56%), Positives = 108/144 (75%)
Query: 58 QPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYH 117
Q + GA SN+I+V+PRQ+GNP+LK + VPWE+ D +IPDYV+G++TCALFLS++YH
Sbjct: 47 QALKPGAK--SNSIIVSPRQRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFLSLRYH 103
Query: 118 ALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAG 172
L PDYI R+++LGK + L QVD KDP ALK L ++C+L D TL+LAWSPEEAG
Sbjct: 104 NLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAG 163
Query: 173 EMIETYKVFENKPPDLIMEKQDVD 196
+ETYK +E KP DL+MEK + D
Sbjct: 164 RYLETYKAYEQKPADLLMEKLEQD 187
Score = 124 (48.7 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 154 ILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 187
>MGI|MGI:95412 [details] [associations]
symbol:Ercc1 "excision repair cross-complementing rodent
repair deficiency, complementation group 1" species:10090 "Mus
musculus" [GO:0000109 "nucleotide-excision repair complex"
evidence=ISO] [GO:0000720 "pyrimidine dimer repair by
nucleotide-excision repair" evidence=IMP] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=ISO] [GO:0001094
"TFIID-class transcription factor binding" evidence=IDA]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005669 "transcription factor TFIID complex" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006289
"nucleotide-excision repair" evidence=ISO;IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006310 "DNA recombination"
evidence=ISO;IMP] [GO:0006312 "mitotic recombination" evidence=ISO]
[GO:0006949 "syncytium formation" evidence=IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0006979
"response to oxidative stress" evidence=ISO] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0009650 "UV
protection" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0010259 "multicellular organismal aging"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IPI] [GO:0019904
"protein domain specific binding" evidence=ISO] [GO:0032205
"negative regulation of telomere maintenance" evidence=ISO]
[GO:0035166 "post-embryonic hemopoiesis" evidence=IMP] [GO:0035264
"multicellular organism growth" evidence=IGI;IMP] [GO:0043066
"negative regulation of apoptotic process" evidence=IMP]
[GO:0045190 "isotype switching" evidence=IMP] [GO:0048468 "cell
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP]
InterPro:IPR000445 InterPro:IPR003583 InterPro:IPR004579
Pfam:PF00633 Pfam:PF03834 ProDom:PD013585 SMART:SM00278
MGI:MGI:95412 GO:GO:0043066 GO:GO:0003684 GO:GO:0008283
GO:GO:0048477 GO:GO:0007283 GO:GO:0001302 GO:GO:0008584
GO:GO:0007281 GO:GO:0006302 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0035264 GO:GO:0001094 GO:GO:0004519
GO:GO:0045190 GO:GO:0010165 GO:GO:0051276 GO:GO:0010259
GO:GO:0009650 GO:GO:0006949 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0000109 GO:GO:0005669 eggNOG:COG5241 HOGENOM:HOG000037440
KO:K10849 TIGRFAMs:TIGR00597 CTD:2067 GeneTree:ENSGT00390000011275
HOVERGEN:HBG051497 OMA:HPDYIHQ OrthoDB:EOG4R23VJ GO:GO:0035166
GO:GO:0000720 ChiTaRS:ERCC1 EMBL:X07414 EMBL:X07413 EMBL:AK088271
EMBL:AK136733 EMBL:AC148988 EMBL:CH466639 EMBL:BC011224
IPI:IPI00133914 IPI:IPI00895992 PIR:S01202 RefSeq:NP_001120796.1
RefSeq:NP_031974.2 UniGene:Mm.280913 ProteinModelPortal:P07903
STRING:P07903 PhosphoSite:P07903 PaxDb:P07903 PRIDE:P07903
Ensembl:ENSMUST00000003645 GeneID:13870 KEGG:mmu:13870
InParanoid:P07903 NextBio:284784 Genevestigator:P07903
GermOnline:ENSMUSG00000003549 Uniprot:P07903
Length = 298
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 83/154 (53%), Positives = 111/154 (72%)
Query: 45 VPAAQNSATSESV-QPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVM 103
VP A E+ Q + GA SN+I+V+PRQ+GNP+LK + VPWE+ + +IPDYV+
Sbjct: 76 VPTGSEPAAGENPSQTLKTGAK--SNSIIVSPRQRGNPVLKFVRNVPWEFGE-VIPDYVL 132
Query: 104 GRTTCALFLSIKYHALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLC 158
G++TCALFLS++YH L PDYI +R+++LGK + L QVD KDP ALK L ++C+L
Sbjct: 133 GQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILA 192
Query: 159 DLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEK 192
D TL+LAWS EEAG +ETYK +E KP DL+MEK
Sbjct: 193 DCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEK 226
Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEK 30
+LAWS EEAG +ETYK +E KP DL+MEK
Sbjct: 197 VLAWSAEEAGRYLETYKAYEQKPADLLMEK 226
>RGD|1306992 [details] [associations]
symbol:Ercc1 "excision repair cross-complementing rodent repair
deficiency, complementation group 1" species:10116 "Rattus
norvegicus" [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IEA;ISO] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000720
"pyrimidine dimer repair by nucleotide-excision repair"
evidence=IEA;ISO] [GO:0000784 "nuclear chromosome, telomeric
region" evidence=IEA;ISO] [GO:0001094 "TFIID-class transcription
factor binding" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003684 "damaged DNA binding" evidence=IEA;ISO] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005669 "transcription factor TFIID
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=ISO] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA;ISO] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IEA;ISO] [GO:0006302
"double-strand break repair" evidence=IEA;ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0006312 "mitotic recombination"
evidence=IEA;ISO] [GO:0006949 "syncytium formation"
evidence=IEA;ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=IEA;ISO] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0007283 "spermatogenesis" evidence=IEA;ISO]
[GO:0007584 "response to nutrient" evidence=IEP] [GO:0008022
"protein C-terminus binding" evidence=IEA;ISO] [GO:0008283 "cell
proliferation" evidence=IEA;ISO] [GO:0008584 "male gonad
development" evidence=IEA;ISO] [GO:0009628 "response to abiotic
stimulus" evidence=IEP] [GO:0009650 "UV protection"
evidence=IEA;ISO] [GO:0009744 "response to sucrose stimulus"
evidence=IEP] [GO:0010165 "response to X-ray" evidence=IEA;ISO]
[GO:0010259 "multicellular organismal aging" evidence=IEA;ISO]
[GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0019904
"protein domain specific binding" evidence=IEA;ISO] [GO:0032205
"negative regulation of telomere maintenance" evidence=IEA;ISO]
[GO:0035166 "post-embryonic hemopoiesis" evidence=IEA;ISO]
[GO:0035264 "multicellular organism growth" evidence=IEA;ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA;ISO] [GO:0045190 "isotype switching" evidence=IEA;ISO]
[GO:0048468 "cell development" evidence=ISO] [GO:0048477
"oogenesis" evidence=IEA;ISO] [GO:0048568 "embryonic organ
development" evidence=IEP] [GO:0051276 "chromosome organization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=ISO] InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 RGD:1306992 GO:GO:0005634
GO:GO:0005737 GO:GO:0043066 GO:GO:0006979 GO:GO:0003684
GO:GO:0008283 GO:GO:0009744 GO:GO:0007584 GO:GO:0048477
GO:GO:0007283 GO:GO:0001302 GO:GO:0008584 GO:GO:0003697
GO:GO:0007281 GO:GO:0006302 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0035264 GO:GO:0045190 GO:GO:0010165 GO:GO:0051276
GO:GO:0010259 GO:GO:0000784 GO:GO:0006312 EMBL:CH473979
GO:GO:0048568 GO:GO:0009650 GO:GO:0006949 GO:GO:0000014
GO:GO:0009628 InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0000109
KO:K10849 TIGRFAMs:TIGR00597 CTD:2067 GeneTree:ENSGT00390000011275
OMA:HPDYIHQ OrthoDB:EOG4R23VJ GO:GO:0032205 GO:GO:0006295
GO:GO:0006296 GO:GO:0035166 GO:GO:0000720 IPI:IPI00188143
RefSeq:NP_001099698.1 UniGene:Rn.7320 Ensembl:ENSRNOT00000024113
GeneID:292673 KEGG:rno:292673 UCSC:RGD:1306992 NextBio:634489
Uniprot:D3ZAQ9
Length = 298
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 81/153 (52%), Positives = 110/153 (71%)
Query: 45 VPAAQNSATSESVQPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMG 104
VP AT +S + +KSS+ I+V+PRQ+GNP+LK + VPWE+ + + PDYV+G
Sbjct: 76 VPTGSEPATGDSPSQTLKAGTKSSS-IIVSPRQRGNPVLKFVRSVPWEFGE-VTPDYVLG 133
Query: 105 RTTCALFLSIKYHALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLCD 159
++TCALFLS++YH L PDYI +R+++LGK + L QVD KDP ALK L ++C+L D
Sbjct: 134 QSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKICILAD 193
Query: 160 LTLMLAWSPEEAGEMIETYKVFENKPPDLIMEK 192
TL+LAWS EEAG +ETYK +E KP DL+MEK
Sbjct: 194 CTLVLAWSAEEAGRYLETYKAYEQKPADLLMEK 226
Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEK 30
+LAWS EEAG +ETYK +E KP DL+MEK
Sbjct: 197 VLAWSAEEAGRYLETYKAYEQKPADLLMEK 226
>UNIPROTKB|Q9QYP5 [details] [associations]
symbol:ERCC1 "ERCC1 protein" species:10029 "Cricetulus
griseus" [GO:0000109 "nucleotide-excision repair complex"
evidence=ISS] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] [GO:0006312 "mitotic
recombination" evidence=ISS] [GO:0006979 "response to oxidative
stress" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0032205 "negative regulation of telomere
maintenance" evidence=ISS] [GO:0000014 "single-stranded DNA
specific endodeoxyribonuclease activity" evidence=ISS] [GO:0043566
"structure-specific DNA binding" evidence=ISS] InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 GO:GO:0006979 GO:GO:0003684
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0008022
GO:GO:0004519 GO:GO:0000784 GO:GO:0006312 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0000109 TIGRFAMs:TIGR00597 CTD:2067
HOVERGEN:HBG051497 GO:GO:0032205 GO:GO:0006295 GO:GO:0006296
EMBL:AB008427 RefSeq:NP_001233733.1 ProteinModelPortal:Q9QYP5
SMR:Q9QYP5 GeneID:100689377 Uniprot:Q9QYP5
Length = 293
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 79/140 (56%), Positives = 105/140 (75%)
Query: 58 QPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYH 117
Q + GA SN+ILV+PRQ+GNP+LK + VPWE+ + + PDYV+G++TCALFLS++YH
Sbjct: 85 QTVKTGAK--SNSILVSPRQRGNPVLKFVRNVPWEFGE-VTPDYVLGQSTCALFLSLRYH 141
Query: 118 ALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAG 172
L PDYI +R+++LGK + L QVD KDP ALK L ++C+L D TL+LAWS EEAG
Sbjct: 142 NLHPDYIHERLQSLGKSFALRVLLVQVDVKDPQKALKDLAKMCILADCTLVLAWSAEEAG 201
Query: 173 EMIETYKVFENKPPDLIMEK 192
+ETYK +E KP DL+MEK
Sbjct: 202 RYLETYKAYEQKPADLLMEK 221
Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEK 30
+LAWS EEAG +ETYK +E KP DL+MEK
Sbjct: 192 VLAWSAEEAGRYLETYKAYEQKPADLLMEK 221
>UNIPROTKB|B3KRR0 [details] [associations]
symbol:ERCC1 "cDNA FLJ34720 fis, clone MESAN2005724, highly
similar to DNA EXCISION REPAIR PROTEIN ERCC-1" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000445 InterPro:IPR003583
InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834 ProDom:PD013585
SMART:SM00278 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684
GO:GO:0006281 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004519
InterPro:IPR010994 SUPFAM:SSF47781 HOGENOM:HOG000037440
TIGRFAMs:TIGR00597 HOVERGEN:HBG051497 EMBL:AC092309 EMBL:AC138128
EMBL:AC138534 EMBL:AC139353 UniGene:Hs.435981 HGNC:HGNC:3433
ChiTaRS:ERCC1 EMBL:AK092039 IPI:IPI00640338 SMR:B3KRR0
STRING:B3KRR0 Ensembl:ENST00000423698 UCSC:uc002pbu.2
Uniprot:B3KRR0
Length = 225
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 74/129 (57%), Positives = 96/129 (74%)
Query: 73 VNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYHALKPDYIADRIKALG 132
V P +GNP+LK + VPWE+ D +IPDYV+G++TCALFLS++YH L PDYI R+++LG
Sbjct: 31 VPPGVRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLG 89
Query: 133 KLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENKPPD 187
K + L QVD KDP ALK L ++C+L D TL+LAWSPEEAG +ETYK +E KP D
Sbjct: 90 KNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPAD 149
Query: 188 LIMEKQDVD 196
L+MEK + D
Sbjct: 150 LLMEKLEQD 158
Score = 124 (48.7 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 125 ILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 158
>UNIPROTKB|K7ES46 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR010994
SUPFAM:SSF47781 TIGRFAMs:TIGR00597 EMBL:AC092309 EMBL:AC138128
EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433 Ensembl:ENST00000589381
Uniprot:K7ES46
Length = 209
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 74/129 (57%), Positives = 96/129 (74%)
Query: 73 VNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYHALKPDYIADRIKALG 132
V P +GNP+LK + VPWE+ D +IPDYV+G++TCALFLS++YH L PDYI R+++LG
Sbjct: 31 VPPGVRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLG 89
Query: 133 KLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENKPPD 187
K + L QVD KDP ALK L ++C+L D TL+LAWSPEEAG +ETYK +E KP D
Sbjct: 90 KNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPAD 149
Query: 188 LIMEKQDVD 196
L+MEK + D
Sbjct: 150 LLMEKLEQD 158
Score = 124 (48.7 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 125 ILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 158
>POMBASE|SPBC4F6.15c [details] [associations]
symbol:swi10 "DNA repair endonuclease Swi10"
species:4896 "Schizosaccharomyces pombe" [GO:0000109
"nucleotide-excision repair complex" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0007534 "gene conversion at mating-type locus" evidence=IMP]
[GO:0031593 "polyubiquitin binding" evidence=IDA] [GO:0046982
"protein heterodimerization activity" evidence=IPI] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
PomBase:SPBC4F6.15c GO:GO:0005829 GO:GO:0003684 EMBL:CU329671
GenomeReviews:CU329671_GR InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0031593 GO:GO:0004519 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0000109 eggNOG:COG5241 HOGENOM:HOG000037440 KO:K10849
TIGRFAMs:TIGR00597 GO:GO:0006296 GO:GO:0007534 OrthoDB:EOG4DBXQ6
EMBL:X61926 PIR:S30292 RefSeq:NP_596115.1 ProteinModelPortal:Q06182
SMR:Q06182 STRING:Q06182 EnsemblFungi:SPBC4F6.15c.1 GeneID:2540887
KEGG:spo:SPBC4F6.15c OMA:KQRGNPI NextBio:20802003 Uniprot:Q06182
Length = 252
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 75/153 (49%), Positives = 101/153 (66%)
Query: 58 QPSRAGASK-SSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKY 116
QP+ S+ ++++ILVNPRQKGNPLL H+ VPWEY D I+PD+VMG C+LFLS+KY
Sbjct: 29 QPTPQKVSRVTAHSILVNPRQKGNPLLPHVRNVPWEYTD-IVPDFVMGTGICSLFLSLKY 87
Query: 117 HALKPDYIADRIKALGKLYKLQ-----VDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEA 171
H L P+YI RI LGK Y L+ VD ++ +++ L + ++ TL+LAWS EEA
Sbjct: 88 HHLHPEYIYSRISKLGKSYNLRILLILVDVENHQASIQELVKTSIVNQYTLILAWSSEEA 147
Query: 172 GEMIETYKVFENKPPDLIMEKQDVDPHSKTWNF 204
+ETYK +EN P LIMEK D S+ +F
Sbjct: 148 ARYLETYKAYENMSPALIMEKPSTDYLSQVQSF 180
Score = 109 (43.4 bits), Expect = 0.00037, P = 0.00037
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVDPHSKTWNF 42
+LAWS EEA +ETYK +EN P LIMEK D S+ +F
Sbjct: 139 ILAWSSEEAARYLETYKAYENMSPALIMEKPSTDYLSQVQSF 180
>TAIR|locus:2096329 [details] [associations]
symbol:ERCC1 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0010332 "response to gamma radiation"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0006294
"nucleotide-excision repair, preincision complex assembly"
evidence=IMP] [GO:0017108 "5'-flap endonuclease activity"
evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] [GO:0010224 "response to UV-B" evidence=IMP]
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
SMART:SM00278 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 GO:GO:0010332 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0010224 EMBL:AC009177 GO:GO:0017108
InterPro:IPR010994 SUPFAM:SSF47781 EMBL:AF276082 EMBL:AY050335
EMBL:AY116935 EMBL:AY088915 IPI:IPI00546398 RefSeq:NP_187172.1
UniGene:At.15981 ProteinModelPortal:Q9MA98 SMR:Q9MA98 IntAct:Q9MA98
STRING:Q9MA98 PaxDb:Q9MA98 PRIDE:Q9MA98 EnsemblPlants:AT3G05210.1
GeneID:819685 KEGG:ath:AT3G05210 GeneFarm:4450 TAIR:At3g05210
eggNOG:COG5241 HOGENOM:HOG000037440 InParanoid:Q9MA98 KO:K10849
OMA:CHVDVED PhylomeDB:Q9MA98 ProtClustDB:CLSN2684472
Genevestigator:Q9MA98 GermOnline:AT3G05210 GO:GO:0010213
GO:GO:0006294 TIGRFAMs:TIGR00597 Uniprot:Q9MA98
Length = 410
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 76/167 (45%), Positives = 102/167 (61%)
Query: 35 PHSKTWNFDPVPAAQNSATSESVQPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYD 94
PHS + A +S+T + + +++ NAILV+ RQKGNPLLKHI V W +
Sbjct: 91 PHSSSQTHQ-TDGASSSSTPVATGSVPSNTTQNRNAILVSHRQKGNPLLKHIRNVKWVFS 149
Query: 95 DSIIPDYVMGRTTCALFLSIKYHALKPDYIADRIKALGKLYKLQV-----DSKDPHHALK 149
D IIPDYV+G+ +CAL+LS++YH L PDY+ RI+ L K +KL V D +D L
Sbjct: 150 D-IIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIRELQKNFKLSVVLCHVDVEDTVKPLL 208
Query: 150 YLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 196
+T+ LL D TL+ AWS E +ET KV+ENKP DLI + D D
Sbjct: 209 EVTKTALLHDCTLLCAWSMTECARYLETIKVYENKPADLIQGQMDTD 255
>UNIPROTKB|K7ER60 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
InterPro:IPR011335 SUPFAM:SSF52980 TIGRFAMs:TIGR00597 EMBL:AC092309
EMBL:AC138128 EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433
Ensembl:ENST00000591636 Uniprot:K7ER60
Length = 213
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 64/116 (55%), Positives = 86/116 (74%)
Query: 58 QPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYH 117
Q + GA SN+I+V+PRQ+GNP+LK + VPWE+ D +IPDYV+G++TCALFLS++YH
Sbjct: 90 QALKPGAK--SNSIIVSPRQRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFLSLRYH 146
Query: 118 ALKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSP 168
L PDYI R+++LGK + L QVD KDP ALK L ++C+L D TL+LAW P
Sbjct: 147 NLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWRP 202
>ASPGD|ASPL0000074569 [details] [associations]
symbol:AN4331 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0007534 "gene conversion at mating-type locus"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0004519 EMBL:BN001303 InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG5241 KO:K10849 TIGRFAMs:TIGR00597
EMBL:AACD01000075 OrthoDB:EOG4DBXQ6 RefSeq:XP_661935.1
ProteinModelPortal:Q5B549 STRING:Q5B549
EnsemblFungi:CADANIAT00006130 GeneID:2872131 KEGG:ani:AN4331.2
HOGENOM:HOG000187852 OMA:PRSINKS Uniprot:Q5B549
Length = 328
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 75/151 (49%), Positives = 96/151 (63%)
Query: 51 SATSESVQPS-RAGASKSS-NAILVNPRQKGNPLLKHIGKVPWEYDDSIIP-DYVMGRTT 107
+AT + QP +A ASKS +AILV+ RQKGNP+L HI PWEY D IP DYV+G TT
Sbjct: 34 AATPKVQQPKPQALASKSGPSAILVSTRQKGNPILNHIKFQPWEYAD--IPADYVIGATT 91
Query: 108 CALFLSIKYHALKPDYIADRIKALGKLYKLQV--DSKD-PHHA--LKYLTRVCLLCDLTL 162
CALFLS+KYH L P+YI RIK L Y L+V D P+H LK L++ ++ +LTL
Sbjct: 92 CALFLSLKYHRLHPEYIYSRIKQLAGKYLLRVLLIIVDIPNHEDPLKELSKTSIINNLTL 151
Query: 163 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQ 193
+L WS EA +E +K E+ P I +Q
Sbjct: 152 ILCWSAPEAAHYLELFKSCEHSQPTAIRTQQ 182
>GENEDB_PFALCIPARUM|PFB0160w [details] [associations]
symbol:PFB0160w "ERCC1 nucleotide excision
repair protein, putative" species:5833 "Plasmodium falciparum"
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS]
InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0004520 EMBL:AE001362 InterPro:IPR010994 SUPFAM:SSF47781
KO:K10849 TIGRFAMs:TIGR00597 OMA:KQRGNPI PIR:E71621
RefSeq:XP_001349545.1 ProteinModelPortal:O96136
EnsemblProtists:PFB0160w:mRNA GeneID:812627 KEGG:pfa:PFB0160w
EuPathDB:PlasmoDB:PF3D7_0203300 HOGENOM:HOG000284229
ProtClustDB:CLSZ2429170 Uniprot:O96136
Length = 242
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 51/176 (28%), Positives = 102/176 (57%)
Query: 26 LIMEKQDVDPHSKTWNFDPVPAAQNSATSESVQPSRAGASK-SSNA---ILVNPRQKGNP 81
++ +K+D +K N D V + ++ + + G S +NA ++++ RQK NP
Sbjct: 1 MVSDKED--QCNKINNNDNVTSLESINEEKKNNTNEGGESFFDNNAEQYLIISLRQKLNP 58
Query: 82 LLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYHALKPDYIADRIKALGKLYKLQ--- 138
++K I +V +++++ IIPD+++G+ LF+S+KYH L+ +Y+ RI+ L Y +
Sbjct: 59 VIKKIKRVRYKFNN-IIPDFLVGKNNACLFISMKYHRLRSNYLKARIETLSNKYNNRILL 117
Query: 139 --VDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEK 192
VD ++ ++L + ++ ++TL+L WS EE +IE ++++E K +I +K
Sbjct: 118 CLVDMENIENSLGEINQLSFSFNMTLILCWSNEECARVIEDFRIYEKKISYIIKKK 173
>UNIPROTKB|I3LFQ1 [details] [associations]
symbol:ERCC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035166 "post-embryonic
hemopoiesis" evidence=IEA] [GO:0032205 "negative regulation of
telomere maintenance" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0010259 "multicellular
organismal aging" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0008584
"male gonad development" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006949 "syncytium
formation" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IEA] [GO:0000720 "pyrimidine dimer repair by
nucleotide-excision repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
GO:GO:0005737 GO:GO:0043066 GO:GO:0006979 GO:GO:0003684
GO:GO:0008283 GO:GO:0048477 GO:GO:0007283 GO:GO:0001302
GO:GO:0008584 GO:GO:0003697 GO:GO:0007281 GO:GO:0006302
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0035264 GO:GO:0045190
GO:GO:0010165 GO:GO:0051276 GO:GO:0010259 GO:GO:0000784
GO:GO:0006312 GO:GO:0009650 GO:GO:0006949 GO:GO:0000014
GO:GO:0000109 TIGRFAMs:TIGR00597 GeneTree:ENSGT00390000011275
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0035166
GO:GO:0000720 Ensembl:ENSSSCT00000022562 OMA:PPARRKF Uniprot:I3LFQ1
Length = 148
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 37/67 (55%), Positives = 54/67 (80%)
Query: 58 QPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYH 117
Q + GA SN+I+V+PRQ+GNP+L+ + VPW++ D ++PDYV+G++TCALFLS++YH
Sbjct: 85 QAPKPGAK--SNSIIVSPRQRGNPVLRFVRNVPWQFGD-VLPDYVLGQSTCALFLSLRYH 141
Query: 118 ALKPDYI 124
L PDYI
Sbjct: 142 NLHPDYI 148
>UNIPROTKB|O96136 [details] [associations]
symbol:PFB0160w "ERCC1 nucleotide excision repair protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] InterPro:IPR004579
Pfam:PF03834 ProDom:PD013585 GO:GO:0005634 GO:GO:0003684
GO:GO:0006281 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004520
EMBL:AE001362 InterPro:IPR010994 SUPFAM:SSF47781 KO:K10849
TIGRFAMs:TIGR00597 OMA:KQRGNPI PIR:E71621 RefSeq:XP_001349545.1
ProteinModelPortal:O96136 EnsemblProtists:PFB0160w:mRNA
GeneID:812627 KEGG:pfa:PFB0160w EuPathDB:PlasmoDB:PF3D7_0203300
HOGENOM:HOG000284229 ProtClustDB:CLSZ2429170 Uniprot:O96136
Length = 242
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 51/176 (28%), Positives = 102/176 (57%)
Query: 26 LIMEKQDVDPHSKTWNFDPVPAAQNSATSESVQPSRAGASK-SSNA---ILVNPRQKGNP 81
++ +K+D +K N D V + ++ + + G S +NA ++++ RQK NP
Sbjct: 1 MVSDKED--QCNKINNNDNVTSLESINEEKKNNTNEGGESFFDNNAEQYLIISLRQKLNP 58
Query: 82 LLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYHALKPDYIADRIKALGKLYKLQ--- 138
++K I +V +++++ IIPD+++G+ LF+S+KYH L+ +Y+ RI+ L Y +
Sbjct: 59 VIKKIKRVRYKFNN-IIPDFLVGKNNACLFISMKYHRLRSNYLKARIETLSNKYNNRILL 117
Query: 139 --VDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEK 192
VD ++ ++L + ++ ++TL+L WS EE +IE ++++E K +I +K
Sbjct: 118 CLVDMENIENSLGEINQLSFSFNMTLILCWSNEECARVIEDFRIYEKKISYIIKKK 173
>WB|WBGene00008665 [details] [associations]
symbol:ercc-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0004519 InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG5241
KO:K10849 TIGRFAMs:TIGR00597 GeneTree:ENSGT00390000011275
EMBL:Z80216 OMA:KQRGNPI PIR:T20726 RefSeq:NP_492652.2
ProteinModelPortal:Q93456 SMR:Q93456 STRING:Q93456 PaxDb:Q93456
EnsemblMetazoa:F10G8.7.1 EnsemblMetazoa:F10G8.7.2 GeneID:172867
KEGG:cel:CELE_F10G8.7 UCSC:F10G8.7 CTD:172867 WormBase:F10G8.7
HOGENOM:HOG000017382 InParanoid:Q93456 NextBio:877331
Uniprot:Q93456
Length = 262
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 50/153 (32%), Positives = 86/153 (56%)
Query: 51 SATSESVQPSRAGASKSSNAILVNPR-QKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCA 109
S+++ S P G S A++VN R Q+GNP+LK++ V +E+ D I PD+ G T
Sbjct: 34 SSSTSSDPPVGIGGS---GALVVNRRRQEGNPVLKYVRNVRYEWGD-IGPDFECGPTFGV 89
Query: 110 LFLSIKYHALKPDYIADRIKALGK-LYKLQV-----DSKDPHHALKYLTRVCLLCDLTLM 163
++LS KYH P+Y+ RI + Y+ +V + ++P H L+ L +C T +
Sbjct: 90 VYLSFKYHKQHPEYVYTRINGNAENRYRNKVLLGYCNMEEPRHVLRELNMICFREAWTFV 149
Query: 164 LAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 196
+ ++ EEA E IE +K + K ++ ++K+ +D
Sbjct: 150 VVYTVEEAAEYIELFKTTQKK--EITIKKKAID 180
>CGD|CAL0001589 [details] [associations]
symbol:RAD10 species:5476 "Candida albicans" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IEA;ISA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IEA;ISA] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=IEA;ISA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0031593 "polyubiquitin binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0034644 "cellular response to UV" evidence=IMP]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0000733
"DNA strand renaturation" evidence=IEA] [GO:0000736 "double-strand
break repair via single-strand annealing, removal of nonhomologous
ends" evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
CGD:CAL0001589 GO:GO:0003684 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0034644 GO:GO:0004519 EMBL:AACQ01000041 EMBL:AACQ01000040
InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG5241 KO:K10849
TIGRFAMs:TIGR00597 GO:GO:0006296 GO:GO:0000110 RefSeq:XP_718490.1
RefSeq:XP_718574.1 ProteinModelPortal:Q5AA15 STRING:Q5AA15
GeneID:3639804 GeneID:3639884 KEGG:cal:CaO19.10006
KEGG:cal:CaO19.2469 HOGENOM:HOG000246576 Uniprot:Q5AA15
Length = 338
Score = 183 (69.5 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 54/159 (33%), Positives = 81/159 (50%)
Query: 44 PVPAAQNSATSESVQPSRAGASKSSNA-ILVNPRQKGNPLLKH--IGKVPWEYDDSIIPD 100
P+P +N+ SV+PS S + ILV+ Q+GNPLL + PW +D S++ D
Sbjct: 91 PIPPKRNN---NSVKPSTKRTQTSGPSDILVSRSQEGNPLLSTPIMQATPWSFDKSLLSD 147
Query: 101 YVMGRTTCALFLSIKYHALKPDYIADRIKALGK----LYK---------LQVDSKDPHH- 146
Y + +FL++KYH L P++I +R K L + ++ L V D H
Sbjct: 148 YYINPKFQIIFLTLKYHKLHPEHIWNRWKKLNQGSSTVHTRGDDALRVLLVVVDVDSHQD 207
Query: 147 ALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENKP 185
L+ L+ C+ DL+L+LAWS EEA I K + P
Sbjct: 208 LLRKLSDFCIKHDLSLVLAWSYEEAANYIALCKQLDKAP 246
>UNIPROTKB|Q5AA15 [details] [associations]
symbol:RAD10 "Putative uncharacterized protein ERC1"
species:237561 "Candida albicans SC5314" [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=ISA]
[GO:0006296 "nucleotide-excision repair, DNA incision, 5'-to
lesion" evidence=ISA] [GO:0034644 "cellular response to UV"
evidence=IMP] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISA] InterPro:IPR004579
Pfam:PF03834 ProDom:PD013585 CGD:CAL0001589 GO:GO:0003684
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0034644 GO:GO:0004519
EMBL:AACQ01000041 EMBL:AACQ01000040 InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG5241 KO:K10849 TIGRFAMs:TIGR00597
GO:GO:0006296 GO:GO:0000110 RefSeq:XP_718490.1 RefSeq:XP_718574.1
ProteinModelPortal:Q5AA15 STRING:Q5AA15 GeneID:3639804
GeneID:3639884 KEGG:cal:CaO19.10006 KEGG:cal:CaO19.2469
HOGENOM:HOG000246576 Uniprot:Q5AA15
Length = 338
Score = 183 (69.5 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 54/159 (33%), Positives = 81/159 (50%)
Query: 44 PVPAAQNSATSESVQPSRAGASKSSNA-ILVNPRQKGNPLLKH--IGKVPWEYDDSIIPD 100
P+P +N+ SV+PS S + ILV+ Q+GNPLL + PW +D S++ D
Sbjct: 91 PIPPKRNN---NSVKPSTKRTQTSGPSDILVSRSQEGNPLLSTPIMQATPWSFDKSLLSD 147
Query: 101 YVMGRTTCALFLSIKYHALKPDYIADRIKALGK----LYK---------LQVDSKDPHH- 146
Y + +FL++KYH L P++I +R K L + ++ L V D H
Sbjct: 148 YYINPKFQIIFLTLKYHKLHPEHIWNRWKKLNQGSSTVHTRGDDALRVLLVVVDVDSHQD 207
Query: 147 ALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFENKP 185
L+ L+ C+ DL+L+LAWS EEA I K + P
Sbjct: 208 LLRKLSDFCIKHDLSLVLAWSYEEAANYIALCKQLDKAP 246
>UNIPROTKB|K7EK97 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
InterPro:IPR011335 SUPFAM:SSF52980 EMBL:AC092309 EMBL:AC138128
EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433 Ensembl:ENST00000589214
Uniprot:K7EK97
Length = 141
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 58 QPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFL 112
Q + GA SN+I+V+PRQ+GNP+LK + VPWE+ D +IPDYV+G++TCALFL
Sbjct: 90 QALKPGAK--SNSIIVSPRQRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFL 141
>SGD|S000004560 [details] [associations]
symbol:RAD10 "Single-stranded DNA endonuclease (with Rad1p)"
species:4932 "Saccharomyces cerevisiae" [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0000014 "single-stranded DNA
specific endodeoxyribonuclease activity" evidence=IDA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=IDA] [GO:0000710 "meiotic mismatch repair" evidence=IMP]
[GO:0000736 "double-strand break repair via single-strand
annealing, removal of nonhomologous ends" evidence=IMP] [GO:0000735
"removal of nonhomologous ends" evidence=IMP] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=IPI]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006312
"mitotic recombination" evidence=IMP] [GO:0004518 "nuclease
activity" evidence=IEA] InterPro:IPR004579 Pfam:PF03834
ProDom:PD013585 SGD:S000004560 GO:GO:0003684 EMBL:BK006946
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004519
EMBL:Z46660 GO:GO:0000733 eggNOG:COG5241 KO:K10849
TIGRFAMs:TIGR00597 GeneTree:ENSGT00390000011275 GO:GO:0006296
GO:GO:0000110 GO:GO:0000710 EMBL:X02591 EMBL:X05225 PIR:A24576
RefSeq:NP_013614.1 ProteinModelPortal:P06838 SMR:P06838
DIP:DIP-1545N IntAct:P06838 MINT:MINT-391436 STRING:P06838
PaxDb:P06838 PeptideAtlas:P06838 PRIDE:P06838 EnsemblFungi:YML095C
GeneID:854878 KEGG:sce:YML095C CYGD:YML095c HOGENOM:HOG000000743
OMA:ENPLLNH OrthoDB:EOG4DBXQ6 NextBio:977822 Genevestigator:P06838
GermOnline:YML095C GO:GO:0000736 Uniprot:P06838
Length = 210
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 46/143 (32%), Positives = 72/143 (50%)
Query: 44 PVPAAQNSATSESVQPSRAGASKSSNAILVNPRQKGNPLLKHIGKVPWEYDDS-----II 98
P + AT + + +++ +LVN QK NPLL H+ W Y S I
Sbjct: 66 PEEWTDSKATDDYNRKRPFRSTRPGKTVLVNTTQKENPLLNHLKSTNWRYVSSTGINMIY 125
Query: 99 PDY-VMGRTTCALFLSIKYHALKPDYIADRIKALGK----LYKLQVDSKDPHHALKYLTR 153
DY V GR+ LFL++ YH L DYI+ R++ L + + VD + L +T+
Sbjct: 126 YDYLVRGRSV--LFLTLTYHKLYVDYISRRMQPLSRNENNILIFIVDDNNSEDTLNDITK 183
Query: 154 VCLLCDLTLMLAWSPEEAGEMIE 176
+C+ TL+LA++ E+A + IE
Sbjct: 184 LCMFNGFTLLLAFNFEQAAKYIE 206
>UNIPROTKB|K7EJW9 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 ProDom:PD013585 InterPro:IPR011335
SUPFAM:SSF52980 EMBL:AC092309 EMBL:AC138128 EMBL:AC138534
EMBL:AC139353 HGNC:HGNC:3433 Ensembl:ENST00000592444 Uniprot:K7EJW9
Length = 112
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 155 CLLCDLTLMLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 196
C+L D TL+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 2 CILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 43
Score = 124 (48.7 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 1 MLAWSPEEAGEMIETYKVFENKPPDLIMEKQDVD 34
+LAWSPEEAG +ETYK +E KP DL+MEK + D
Sbjct: 10 ILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQD 43
>DICTYBASE|DDB_G0267682 [details] [associations]
symbol:ercc1 "DNA excision repair protein 1"
species:44689 "Dictyostelium discoideum" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
dictyBase:DDB_G0267682 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0006289
GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG5241
KO:K10849 RefSeq:XP_647218.1 HSSP:P07992 STRING:Q55GG6
EnsemblProtists:DDB0232362 GeneID:8616022 KEGG:ddi:DDB_G0267682
OMA:NDIASTN GO:GO:0000110 Uniprot:Q55GG6
Length = 514
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 43/150 (28%), Positives = 74/150 (49%)
Query: 71 ILVNPRQKGNPLLKHIGK-VPWEYDDSIIPDYVMGRTTCALFL-SIKYHALKPDYIADRI 128
I N +Q+G+ ++ K + EY + PD+++ T +L S+K H P+ I DRI
Sbjct: 217 IYANSKQRGSLMMNSFSKNIIIEYSELQYPDFILNSNTLVFYLPSLKTHRDNPNLIQDRI 276
Query: 129 KALGKL------YKLQV-----DSKDPHHALKYLTRVCLLC---DLTLMLAWSPEEAGEM 174
K L L + L++ D D + +++ + L+ TL++ WS EA +
Sbjct: 277 KGLSTLMTNSDSFTLRILLVFADLSDSDNCEQFINELNLIAIKLQFTLIVCWSQIEAAKY 336
Query: 175 IETYKVFENKPPDLIMEK-QDVDPHSKTWN 203
+E YK F N+ PD I + Q ++ K+ N
Sbjct: 337 LEAYKTFNNRAPDPIKARAQPIELGGKSKN 366
>UNIPROTKB|K7EMT9 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 ProDom:PD013585 InterPro:IPR011335
SUPFAM:SSF52980 TIGRFAMs:TIGR00597 EMBL:AC092309 EMBL:AC138128
EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433 Ensembl:ENST00000590701
Uniprot:K7EMT9
Length = 91
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 119 LKPDYIADRIKALGKLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWS 167
L PDYI R+++LGK + L QVD KDP ALK L ++C+L D TL+LAWS
Sbjct: 3 LHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWS 56
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.410 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 205 205 0.00096 111 3 11 22 0.39 33
31 0.47 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 594 (63 KB)
Total size of DFA: 182 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.82u 0.07s 19.89t Elapsed: 00:00:16
Total cpu time: 19.82u 0.07s 19.89t Elapsed: 00:00:17
Start: Thu Aug 15 14:44:46 2013 End: Thu Aug 15 14:45:03 2013