RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15374
         (205 letters)



>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 129

 Score =  201 bits (512), Expect = 1e-67
 Identities = 77/129 (59%), Positives = 101/129 (78%), Gaps = 6/129 (4%)

Query: 69  NAILVNPRQKGNPLLKHIGKVPWEYDDSIIPDYVMGRTTCALFLSIKYHALKPDYIADRI 128
           N+I+V+PRQ+GNP+LK +  VPWE+ D +IPDYV+G++TCALFLS++YH L PDYI  R+
Sbjct: 1   NSIIVSPRQRGNPVLKFVRNVPWEFGD-VIPDYVLGQSTCALFLSLRYHNLHPDYIHGRL 59

Query: 129 KALGKLYKL-----QVDSKDPHHALKYLTRVCLLCDLTLMLAWSPEEAGEMIETYKVFEN 183
           ++LGK + L     QVD KDP  ALK L ++C+L D TL+LAWSPEEAG  +ETYK +E 
Sbjct: 60  QSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQ 119

Query: 184 KPPDLIMEK 192
           KP DL+MEK
Sbjct: 120 KPADLLMEK 128



 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 21/30 (70%), Positives = 25/30 (83%)

Query: 1   MLAWSPEEAGEMIETYKVFENKPPDLIMEK 30
           +LAWSPEEAG  +ETYK +E KP DL+MEK
Sbjct: 99  ILAWSPEEAGRYLETYKAYEQKPADLLMEK 128


>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 25.7 bits (56), Expect = 1.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 23 PPDLIMEKQDVDPHSK 38
          P DL+MEK + D  S+
Sbjct: 1  PADLLMEKLEQDFVSR 16



 Score = 25.7 bits (56), Expect = 1.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 185 PPDLIMEKQDVDPHSK 200
           P DL+MEK + D  S+
Sbjct: 1   PADLLMEKLEQDFVSR 16


>d2foka3 a.4.5.12 (A:287-386) Restriction endonuclease FokI,
           N-terminal (recognition) domain {Flavobacterium
           okeanokoites [TaxId: 244]}
          Length = 100

 Score = 24.1 bits (52), Expect = 7.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 89  VPWEY--DDSIIPDYVMGRTTCALFLSIKYHALKPDYIADRIKALG 132
           V WE    +    +YV  R    L + IK  +LK + I D +K LG
Sbjct: 5   VYWEMLATNLTDKEYVRTRRALILEILIKAGSLKIEQIQDNLKKLG 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 807,744
Number of extensions: 36192
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 6
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)