BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15380
         (1738 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EWF|A Chain A, Crystal Structure Of The Site-specific Dna Nickase
           N.bspd6i
          Length = 610

 Score = 33.9 bits (76), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 15/123 (12%)

Query: 590 VAALKALDLPNLSEFFLFYLGNSKLDESTRKQFELSLGKHEIPTFHKLLEFAQNH----- 644
           V  L  LD+   + F L    N+++DE   +  +    + +I   +K LEF +N+     
Sbjct: 154 VGGLSKLDI---AMFCLTATNNNQVDEIAEEIMQFRNEREKIKGQNKKLEFTENYFFKRF 210

Query: 645 NKILNRLQCLNSGTGSCENSTRVRPKIQHT-----ASKRGTSHT--FVMRGNMCVLCSEE 697
            KI   +  +  G     + +++  K+++      A+ R   +T  FV RGN  VL  E+
Sbjct: 211 EKIYGNVGKIREGKSDSSHKSKIETKMRNARDVADATTRYFRYTGLFVARGNQLVLNPEK 270

Query: 698 HPL 700
             L
Sbjct: 271 SDL 273


>pdb|2D1G|A Chain A, Structure Of Francisella Tularensis Acid Phosphatase A
            (Acpa) Bound To Orthovanadate
 pdb|2D1G|B Chain B, Structure Of Francisella Tularensis Acid Phosphatase A
            (Acpa) Bound To Orthovanadate
          Length = 498

 Score = 30.8 bits (68), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 9/59 (15%)

Query: 1429 SIPPPHLVQLWQTFQAQLPLLESLAFPRHIGVYLRRKNKMGKPQNVDKDDKILMNGFSK 1487
            + P  H+V ++Q         E+ +F R+ G+Y   KN  G+P+ V K++   +NG +K
Sbjct: 31   TTPIKHVVIIFQ---------ENNSFDRYFGMYPNAKNPEGEPKFVAKENTPNVNGLTK 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,608,274
Number of Sequences: 62578
Number of extensions: 2039792
Number of successful extensions: 4023
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4022
Number of HSP's gapped (non-prelim): 4
length of query: 1738
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1626
effective length of database: 7,964,601
effective search space: 12950441226
effective search space used: 12950441226
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)