BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15380
         (1738 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8BR07|BICD1_MOUSE Protein bicaudal D homolog 1 OS=Mus musculus GN=Bicd1 PE=1 SV=2
          Length = 835

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 108/269 (40%), Gaps = 52/269 (19%)

Query: 375 RLAISSPISGFSSSSFPVNRVEEMVGYIKYKDGELAKPPPPAPTPAPAPISPISCGIKLQ 434
           R  +SSP+   +SS  PV++          ++ E +K P P  TP    ISP+       
Sbjct: 565 RRGVSSPVESRTSSE-PVSK----------ENTETSKEPSPTKTPT---ISPVITA---- 606

Query: 435 PLEIPTFDGACIGNWPLFIEMYRINIHNRTDLTNAHKLQYLLSKLSGGALAVAAGIPPTE 494
           P   P  D + I   P+ I  Y +N   R  + +  K      +LS    A     P  +
Sbjct: 607 PPSSPVLDTSDIRKEPMNI--YNLNAIIRDQIKHLQKAVDRSLQLSRQRAAARELAPMID 664

Query: 495 HNYQVIYDALLEKYDDKRNLATYYMDSLLNFKTQSGSLETFIDYFGAN--VAQVIYDALL 552
            + + + + +L+            + SLL+ K +   + T      AN   A+V    L 
Sbjct: 665 KDKEALMEEILK------------LKSLLSTKRE--QIATLRAVLKANKQTAEVALANLK 710

Query: 553 EKYDDKRNLATYYMDSLLNFKIQSGSLETFIDYFGANVAALKALDLPNLSEFFLFYLGNS 612
            KY++++ + T  M  L N       L+   +   A  ++L+A+      E+       +
Sbjct: 711 NKYENEKAMVTETMTKLRN------ELKALKE-DAATFSSLRAMFATRCDEYV------T 757

Query: 613 KLDESTRKQFELSLGKHEIPTFHKLLEFA 641
           +LDE  R+   L+  + E  T + LL  A
Sbjct: 758 QLDEMQRQ---LAAAEDEKKTLNTLLRMA 783


>sp|Q29451|MA2B1_BOVIN Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B1 PE=1 SV=3
          Length = 999

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 416 APTPAPAPISPISCGIKLQPLEIPTF 441
            PTP P+P  P+S  I LQP+EI TF
Sbjct: 964 GPTPHPSPSRPVSATITLQPMEIRTF 989


>sp|Q6LU31|GUAA_PHOPR GMP synthase [glutamine-hydrolyzing] OS=Photobacterium profundum
           GN=guaA PE=3 SV=1
          Length = 527

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 64/172 (37%), Gaps = 29/172 (16%)

Query: 515 ATYYMDSLLNFKTQSGSLETFIDYFGANVAQVIYDALLEKYDDKRNLATYYMDS-LLNFK 573
           A    D++ N K Q G  E  +   G   + V+   L     DK  L   ++D+ LL   
Sbjct: 213 ANIIEDAIANIKEQVGDDEVILGLSGGVDSSVVAMLLHRAIGDK--LTCVFVDNGLLRLN 270

Query: 574 IQSGSLETFIDYFGANVAALKALDLPNLSEFFLFYLGNSKLDESTRKQFELSLGKHEIPT 633
                ++ F D+FG N+  +KA D       FL  L      E+ RK             
Sbjct: 271 EGEQVMDMFGDHFGLNIVHVKAEDR------FLNALAGENDPEAKRKIIG---------- 314

Query: 634 FHKLLEFAQNHNKILNRLQCLNSGTGSCENSTRVRPK-IQHTASKRGTSHTF 684
            H  ++     +K L   + L  GT        + P  I+  ASK G +H  
Sbjct: 315 -HAFIDVFDEESKKLKNAKWLAQGT--------IYPDVIESAASKNGKAHVI 357


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 646,739,279
Number of Sequences: 539616
Number of extensions: 28350977
Number of successful extensions: 78894
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 78829
Number of HSP's gapped (non-prelim): 62
length of query: 1738
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1606
effective length of database: 120,340,147
effective search space: 193266276082
effective search space used: 193266276082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)