RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15380
(1738 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 1e-12
Identities = 95/627 (15%), Positives = 163/627 (25%), Gaps = 202/627 (32%)
Query: 1039 LDTEHHEKQYC---MFQCDLDKFWE-LD--SVPESKTGKLSPEEISCEQIYSDNVHRDKQ 1092
+D E E QY + D F + D V + LS EE + I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE--IDHII--MSKDAVS 62
Query: 1093 GIYSVPLPFCEDPKQLGDSLNIALKRFSHLEKKLDSNIN-----LRCDYNQAMTDLIDNG 1147
G + ++ +++F +E+ L N ++ + Q ++
Sbjct: 63 GTLRLFWTLLSKQEE-------MVQKF--VEEVLRINYKFLMSPIKTEQRQ--PSMMTRM 111
Query: 1148 FMVKCASLDQGDLNGYFIPHHVVTKPDSPSSKMRIVYDASTKTSSGKSLNDILH--AGSK 1205
+ ++ D N F ++ V++ P K+R A + K++ ++ GS
Sbjct: 112 Y-IEQRDRLYND-NQVFAKYN-VSRLQ-PYLKLR---QALLELRPAKNV--LIDGVLGS- 161
Query: 1206 MYNDLFCILLKFRLFPYALNGDITKMFLQIKLLSDYWKFQ-----KILW-RFSNKEKIDV 1259
G K ++ + + Y K Q KI W N +
Sbjct: 162 --------------------G---KTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPET 197
Query: 1260 YELRVVIFGTKASPYLAQRTVKQLIDDESKNFPLACQYIGESL--------Y------MD 1305
+ + P R D S N L I L Y +
Sbjct: 198 VLEMLQKLLYQIDPNWTSR------SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 1306 DCVISFPSQKEAIEFFNQTVKLFASGGFRFTKWSSNSPEILEQIPIHDRLAEMVSWHTDD 1365
+ V +A FN + K+ + T++ + + H L T D
Sbjct: 252 N-V----QNAKAWNAFNLSCKILLT-----TRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 1366 FSHKILGMLWNTSSDSL---FFKINGLSKPLT--------KRGHTRVNFGLLAPVILWAK 1414
+L + L N P + G + V
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDN--WKHVNCDKL 355
Query: 1415 LLIRELCILKLDWDS----------------IPPPHLVQLWQTFQAQLP----------- 1447
I E + L+ IP L +W
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 1448 LLESLAFPRHIGVY---------------LRRK--NKMGKPQNVDKDDKILMNGFSKPRR 1490
L+E I + L R + P+ D DD P
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD------LIPPYL 469
Query: 1491 N-------GRHFVILLRRLVEKTGGLKIQFKNTSSSTNLFRF-----REVGS-------- 1530
+ G H + E+ ++ F + FRF R +
Sbjct: 470 DQYFYSHIGHHLKNI--EHPERMTLFRMVFLD-------FRFLEQKIRHDSTAWNASGSI 520
Query: 1531 ------LVYYDSYF--NEIYISRRERE 1549
L +Y Y N+ R
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNA 547
Score = 68.0 bits (165), Expect = 3e-11
Identities = 109/624 (17%), Positives = 206/624 (33%), Gaps = 188/624 (30%)
Query: 44 SPSHLFNTFVANRISKIQQNMKVDSLYHVSGTENPADGLSRGLL---PNQFIDYKIYF-- 98
PS + ++ R ++ + +V + Y+VS + P L + LL P + + I
Sbjct: 104 QPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNV--LIDGVL 159
Query: 99 -SGPSWLTEDV-ESWPIRSYSEFKNH-EDIPEQKTVSSVVLAGVENLNNEFLDIFSVESW 155
SG +W+ DV S+ ++ +FK ++ + +V +E L I
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV----LEMLQKLLYQIDP---- 211
Query: 156 PIRSYSEFKNHEDIPEQKTVSSVVLVGVENLNNEFLDIFSRFSSYPK-LLNVMVYVLR-- 212
+++ +H + + ++ E + Y LL VL
Sbjct: 212 ---NWTSRSDHSSNIKLRI---------HSIQAELRRLLKS-KPYENCLL-----VLLNV 253
Query: 213 -FAKILTSKGF-ISAQDLNLTESVVIKIIQNHHFKDIIDKDLNLAESVVIKIIQNHHFKD 270
AK F +S + L T FK + D L+ + I +HH
Sbjct: 254 QNAKAW--NAFNLSCKILLTTR-----------FKQVTDF---LSAATTTHISLDHHSMT 297
Query: 271 IIDKQSTEGDIGYLNLLHSILILKWHCFKCILRRAD-PVQMM-GQPLVVNSFIA--IR-- 324
+ + L+LK+ C R D P +++ P + S IA IR
Sbjct: 298 LTPDEVKS------------LLLKY--LDC--RPQDLPREVLTTNPRRL-SIIAESIRDG 340
Query: 325 -ATFILQYFKQNRVLGENCLISFGKRKFGTVLAARYHSSSSTMVVAQEKKY--RLAISSP 381
AT+ +K K T++ SS + + A+ +K RL++
Sbjct: 341 LATW--DNWKH-----------VNCDKLTTIIE----SSLNVLEPAEYRKMFDRLSV--- 380
Query: 382 ISGFSSSSFPVN-RVEEMV-----GYIKYKD-----GELAKPPPPAPTPAPAPISPISCG 430
FP + + ++ + D +L K S +
Sbjct: 381 --------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------------SLVEKQ 420
Query: 431 IKLQPLEIPTFDGACIGNWPLFIEMYRINIHNRTDLTNAHKL---QY-LLSKLSGGALAV 486
K + IP+ +++E ++ + N L H+ Y + L
Sbjct: 421 PKESTISIPS----------IYLE-LKVKLENEYAL---HRSIVDHYNIPKTFDSDDL-- 464
Query: 487 AAGIPPTEHNYQVIYDAL------LEKYDDKRNLATYYMDSLLNFKTQSGSLETFIDYFG 540
IPP Y Y + +E + ++D F LE I +
Sbjct: 465 ---IPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFLD--FRF------LEQKIRHDS 511
Query: 541 A--NVAQVIYDAL--LEKYDDKRNLATYYMDSLLNFKIQSGSLETFIDYFGANVAALKAL 596
N + I + L L+ Y Y D+ ++ ++ F+ N+ K
Sbjct: 512 TAWNASGSILNTLQQLKFYKP------YICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 597 DLPNLSEFFLFYLGNSKLDESTRK 620
DL ++ L + +E+ ++
Sbjct: 566 DLLRIA---LMAEDEAIFEEAHKQ 586
Score = 68.0 bits (165), Expect = 3e-11
Identities = 87/550 (15%), Positives = 154/550 (28%), Gaps = 174/550 (31%)
Query: 772 NLVQPLSADNVPG--------------TSATNVASQCM------SLSLVVCL-VDLKPVK 810
N Q + NV A NV + ++L VCL ++
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 811 PSK-----LGEWTG------QLELCSHQASPLYLGLLLAFGLSGLRRNIHYTS-----FT 854
K L L+ +Q P + + S ++ IH
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELRRLL 238
Query: 855 SQPKHYNGDQGTTQTTVLLGTVKILVLD-VYGKPHEMRFLLDCASMSNILSLSACKQLGL 913
+ N +LVL V F L C
Sbjct: 239 KSKPYENC---------------LLVLLNVQNAKAWNAFNLSC----------------- 266
Query: 914 KTLFVATDLKGVGSISSPVQGQVTMRFGSR-FDKRYNYTIKALVVNHVVDKLPVKSVDLS 972
K L + +S+ +++ S ++ ++ LP + + +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 973 KLEYLQNIRHKLADDEFMEPGNICGILGAQIYPYLVSGDPLLGKDCNQ-PAAINSTLGYV 1031
I+ I L + D +C++ I S+L
Sbjct: 327 PR--------------------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-- 364
Query: 1032 VLGNAPVLDTEHHEKQY---CMFQCD-------LDKFWELDSVPESKTGKLSPEEISCE- 1080
VL+ + K + +F L W D + + +
Sbjct: 365 ------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF-DVIKS------DVMVVVNKL 411
Query: 1081 QIYSDNVHRDKQGIYSVPLPFCEDPKQLGDSLNIALKRFSHLEKKLDSNINLRCDYNQAM 1140
YS + K+ S+P + L + L+ L + + + N+ ++
Sbjct: 412 HKYSLVEKQPKESTISIP--------SIYLELKVKLENEYALHRSIVDHYNIPKTFDS-- 461
Query: 1141 TDLIDNGFMVKCASLDQGDLNGYF---IPHHVVT-KPDSPSSKMRIVY------------ 1184
DLI LD YF I HH+ + + R+V+
Sbjct: 462 DDLIPP-------YLD-----QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 1185 DASTKTSSGKSLNDILHAGSKMY------ND-----LFCILLKFRLFPYALNGDITKM-- 1231
D++ +SG LN + K Y ND L +L F L N +K
Sbjct: 510 DSTAWNASGSILNTLQQL--KFYKPYICDNDPKYERLVNAILDF-LPKIEENLICSKYTD 566
Query: 1232 FLQIKLLSDY 1241
L+I L+++
Sbjct: 567 LLRIALMAED 576
Score = 63.3 bits (153), Expect = 7e-10
Identities = 79/573 (13%), Positives = 165/573 (28%), Gaps = 167/573 (29%)
Query: 1225 NGDITKMFLQ-------IKLLSDYWK-------FQKILWRFSNKEKIDVYELRVVIFGTK 1270
DI +F K + D K I+ K V + +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-----MSKDAVSGTLRLFWTLL 72
Query: 1271 ASPYLAQRTVKQLIDD-ESKNF-----PLACQYIGESLYMDDCVISFPSQKEAIEFFNQT 1324
+ + V++ +++ N+ P+ + S+ + Q++
Sbjct: 73 SKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR----MYIEQRD-------- 117
Query: 1325 VKLFASGGFRFTKWSSNSPEILEQIPIHDRLAE-----------MV----SWHTDD--FS 1367
+L+ + F K++ + + ++ L E ++ +W D S
Sbjct: 118 -RLY-NDNQVFAKYNVSRLQPYLKL--RQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 1368 HKIL-----GMLWNT-----SSDSLFFKINGLSKPLTKRGHTRVNFGLLAPV-ILWAKLL 1416
+K+ + W S +++ + L + +R + + I +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 1417 IREL--------CILKLD--WDSIPPPHLVQLWQTF--QAQLPLLESLAFPRHIGVYLRR 1464
+R L C+L L ++ + W F ++ LL + R V
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNA-------KAWNAFNLSCKI-LLTT----RFKQVTDFL 281
Query: 1465 KNKMGKPQNVDKDDKILMNGFSKPRRNGRHFVILLRRLVEKTGGLKIQFKNTSSSTNLFR 1524
++D + +LL+ L + L + +TN R
Sbjct: 282 SAATTTHISLDHHSM----TLTPDEVKS----LLLKYLDCRPQDLPREVL----TTNPRR 329
Query: 1525 FREVGSLV--------YYDSYFNEIYISRRERENSCIESSTGRGLLAPVILWAKLLIREL 1576
+ + + + + E S + L P + + L
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIE---SSLNV------LEPAEY--RKMFDRL 378
Query: 1577 CILKLDWDSIPPHHLVQLWQTFQAQLPLLESLAFPRHIGVYKDCKFQLIGFSDASEKGYG 1636
+ IP L +W ++ V K K+ L+ E
Sbjct: 379 SVFPPSAH-IPTILLSLIWFDVIKSDVMVV---------VNKLHKYSLV-EKQPKE---- 423
Query: 1637 ALIFSRVSLPNGSIVIQLICAKSRVSPLKVESIPRLELCAILLMSSLLKVVIDSYTPRYP 1696
S +S+P SI ++L K+E+ L + ++D Y
Sbjct: 424 ----STISIP--SIYLELKV--------KLENEYALH-----------RSIVDHYNIPKT 458
Query: 1697 IDSIYCFTDSSVALCWAHSPSHLFNTFVANRIS 1729
DS ++H HL N R++
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Score = 50.2 bits (119), Expect = 7e-06
Identities = 62/451 (13%), Positives = 119/451 (26%), Gaps = 121/451 (26%)
Query: 266 HHFKDIIDKQSTEGDIGYLNLLHSIL---ILKWHC------FKCILRRADPVQMMGQPLV 316
HH +D ++ E Y ++L + + C K IL + + ++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 317 VNSFIAIRATFILQYFKQNRVLGENCLISFGKRKFGTVLAARYHSSSSTMVVAQEKKYRL 376
V+ F KQ ++ ++ VL Y
Sbjct: 61 VS---GTLRLFWTLLSKQEEMV---------QKFVEEVLRINY----------------- 91
Query: 377 AISSPISGFSSSSF---PVNRVEEMVGYIKYKDGELAKPP--PPAPTPAPAPISPISCGI 431
F S YI+ +D P + +
Sbjct: 92 -------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 432 -KLQPLEIPTFDG-ACIGNWPLFIEMYR--------------INIHN-RTDLTNAHKLQY 474
+L+P + DG G + +++ +N+ N + T LQ
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 475 LLSKLSGGALAVAAGIPPTEHNYQVIYDALLEKYDDKRNLATYYMDSLL----------- 523
LL ++ + + + I L K Y + LL
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-----YENCLLVLLNVQNAKAW 259
Query: 524 ---NFK------TQSGSLETFIDYFGANVAQVI----YDALLEKYDDKRNLATYYMDSLL 570
N T+ + D+ A I + L + K L Y L
Sbjct: 260 NAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-----L 311
Query: 571 NFKIQSGSLET------FIDYFGANVAALKALDLPNLSEFFLFYLGNSKLDESTRKQFEL 624
+ + Q E + ++ D + + ++ KL +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIR-----DGLATWDNWK-HVNCDKLTT-IIESSLN 364
Query: 625 SLGKHEI-PTFHKLLEFAQNHN---KILNRL 651
L E F +L F + + +L+ +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Score = 49.9 bits (118), Expect = 8e-06
Identities = 75/621 (12%), Positives = 165/621 (26%), Gaps = 197/621 (31%)
Query: 240 QNHHFKDII---------DKDLNLAESVVIKIIQNHHFKDIIDKQSTEGDIGYLNLLHSI 290
+ +KDI+ + D + + I+ II + L
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL------ 67
Query: 291 LILKWHCFKCILRRADPV--QMMGQPLVVN-SFIA------------IRATFILQY---F 332
F +L + + + + + + L +N F+ + +I Q +
Sbjct: 68 -------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 333 KQNRVLG-------------ENCLIS--------------FGKRKFGTVLAARYHSSSST 365
N+V L+ GK T +A
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK----TWVALD------- 169
Query: 366 MVVAQEKKYRLAISSPIS--GFSSSSFPVNRVEEMVG---YIKYKDGELAKPPPPAPTPA 420
V K + + I + + P +E + I +
Sbjct: 170 --VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 421 PAPISPISCGIKLQPLE--------------IPTFDGAC-IGNWPLFIEMYR-----INI 460
+ + + +K +P E F+ +C I L ++ ++
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI----LLTTRFKQVTDFLSA 283
Query: 461 HNRTDLTNAHKLQYLLSKLSGGALAVAAGIPPTE-------HNYQVIYDALL-EKYDDKR 512
T ++ H L L P + N + + +++ E D
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGL 341
Query: 513 NLATYYMDSLLNFKTQSGSLETFIDYFGANVAQVIYDAL--------------------L 552
+ +N + +E+ ++ + ++D L +
Sbjct: 342 ATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 553 EKYDD--------KRNLA-------TYYMDSL-LNFKIQSGSL----ETFID-YFGANVA 591
K D K +L T + S+ L K++ + + +D Y
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 592 ALKALDLPNLSEFFLFYLG----NSKLDESTRKQFELSLGKHEIPTFHKL---LEFAQNH 644
L P L ++F ++G N + E + L F + F +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPE----RMTL---------FRMVFLDFRFLE-- 504
Query: 645 NKILNRLQCLNSGTGSCENSTRVRPKIQHTASKRGTSH-------TFVMRGNMCVLCSEE 697
KI + N+ +++ + F+ + ++CS
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS-- 562
Query: 698 HPLFKCNKFLKLSPQERYGVV 718
K L+++ +
Sbjct: 563 ----KYTDLLRIALMAEDEAI 579
Score = 49.5 bits (117), Expect = 1e-05
Identities = 54/416 (12%), Positives = 123/416 (29%), Gaps = 120/416 (28%)
Query: 6 ILLMSSLLKVVID---------SYTPRYPIDSIYC-----FTDSSVALC-------WAHS 44
+L M L ID S + I SI C +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--N 255
Query: 45 PSHL--FN----TFVANRISKIQQNMKVDSLYHVSGTENPADGLSRGLLPNQFIDYKIYF 98
FN + R ++ + + H+S ++ + L+ + + +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLL------ 308
Query: 99 SGPSWLTEDVESWPIRSYSEFKNHEDIPEQ-KTVSSVVLAGV-ENLNNEFLDIFSVESWP 156
+L + D+P + T + L+ + E++ +
Sbjct: 309 ---KYLDCRPQ--------------DLPREVLTTNPRRLSIIAESIRD----------GL 341
Query: 157 IRSYSEFKNHEDIPEQKTVSSVVLVGVENLN-NEFLDIFSRFSSYPKLLNVMVYVLRFAK 215
+ N + + +++++ + L E+ +F R S +P ++ +L
Sbjct: 342 AT----WDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL---S 393
Query: 216 ILTSKGFISAQDLNLTESVVIKIIQNHHFKDIIDKDLNLAESVVIKIIQNHH-FKDIIDK 274
++ ++ +S V+ ++ H +++K + I I + ++ K
Sbjct: 394 LIWF---------DVIKSDVMVVVNKLHKYSLVEKQ---PKESTISI---PSIYLELKVK 438
Query: 275 QSTEGDIGYLNLLHSILI------LKWHCFKCILRRADPVQMMGQPLVVN---SFIA--I 323
E LH ++ + I D S I +
Sbjct: 439 LENEYA------LHRSIVDHYNIPKTFDSDDLIPPYLD-----------QYFYSHIGHHL 481
Query: 324 RATFILQYFKQNRVLGENCLISFGKRKFGTVLAARYHSSSSTMVVAQEKKYRLAIS 379
+ + R++ + F ++K A S S + Q K Y+ I
Sbjct: 482 KNIEHPERMTLFRMVFLD--FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Score = 41.0 bits (95), Expect = 0.004
Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 39/153 (25%)
Query: 9 MSSLLKVVIDSYTPRYPIDSIYCFTDSSVALCWAHSPSHLFNTFVANRISKIQQNMKVDS 68
+L + ++D Y DS P +L F + I
Sbjct: 442 EYALHRSIVDHYNIPKTFDS------------DDLIPPYLDQYF-YSHIG---------- 478
Query: 69 LYHVSGTENP--ADGLSRGLLPNQFIDYKIYFSGPSW-----LTEDVESWPIRSYSEF-K 120
+H+ E+P L +F++ KI +W + ++ ++ Y +
Sbjct: 479 -HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ--LKFYKPYIC 535
Query: 121 NHEDIPEQKTVSSVV--LAGVEN--LNNEFLDI 149
+++ E+ V++++ L +E + +++ D+
Sbjct: 536 DNDPKYERL-VNAILDFLPKIEENLICSKYTDL 567
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.7 bits (170), Expect = 8e-12
Identities = 73/430 (16%), Positives = 124/430 (28%), Gaps = 143/430 (33%)
Query: 1386 INGLS-KPLTKRGHTRVNFGLLAPVILWAKLLIRELCILKLDWDSIPPPHLVQLWQTFQA 1444
++ S +PLT H + LL P + QL + F
Sbjct: 1 MDAYSTRPLTLS-HGSLEHVLLVPTASF--------------------FIASQLQEQFNK 39
Query: 1445 QLP--------------LLESLAFPRHIGVYLRRKNKMGKPQNVDKDDKIL---MNGFSK 1487
LP E + + +G Y+ +P V + D++L + F
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVG--KFLG-YVSSLV---EPSKVGQFDQVLNLCLTEFEN 93
Query: 1488 P--RRNGRHFVI----------------LLRRLVEKTGGLKIQFKNTSSSTNLFRFREVG 1529
N H + L++ + K F S+S LFR G
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-LFRAVGEG 152
Query: 1530 SLVYY---------DSYFNE---IYISRRERENSCIESSTGRGLLAPVILWAKLLIRELC 1577
+ D YF E +Y T L+ +I ++ + EL
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLY-------------QTYHVLVGDLIKFSAETLSELI 199
Query: 1578 ILKLDWDSIPPHHL-VQLWQTFQAQLPLLESLA-----FPRHIGVYKDCKFQLIGFSDAS 1631
LD + + L + W + P + L P IGV QL + +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-IGVI-----QLAHYVVTA 253
Query: 1632 EK-GY--GAL--IFSRVSLPNGSIVIQLICAKSR---------VSPLKV---------ES 1668
+ G+ G L + + +V + A++ + V E+
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 1669 IPRLELCAILLMSSLLKVVIDSYTP-----RYPIDSIYCFTDSSVALCWAHSPSH----- 1718
P L +L S L+ +P + + V +H P+
Sbjct: 314 YPNTSLPPSILEDS-LENNEGVPSPMLSISNLTQEQV----QDYVNKTNSHLPAGKQVEI 368
Query: 1719 -LFNT---FV 1724
L N V
Sbjct: 369 SLVNGAKNLV 378
Score = 62.0 bits (150), Expect = 2e-09
Identities = 92/604 (15%), Positives = 176/604 (29%), Gaps = 222/604 (36%)
Query: 891 RFLLDCASMSNILSLSACKQLGLKTL---FVATDLKG--VGSISSPVQGQVTMRFGSRFD 945
+FL +S+ + Q+ L F L+G + ++++ + + +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 946 --KRYNYTIKALVVNHVVDKLPVKSVDLSKLEYLQNIRHKLADDEFMEPGNICGILGAQ- 1002
K Y T + + K P S L + + A + I G Q
Sbjct: 122 LIKNY-ITARIMA------KRPFDKKSNSAL--FRAVGEGNA--------QLVAIFGGQG 164
Query: 1003 --------------IYPYLVSGDPLLGKDCNQPAAINSTLGYVVLGNAPVLDTEHHEKQY 1048
Y LV L+ + +A TL + ++ T ++
Sbjct: 165 NTDDYFEELRDLYQTYHVLV--GDLI-----KFSA--ETL-------SELIRTTLDAEKV 208
Query: 1049 CMFQCDLDKFWELDSVPESKTGKLSPEE---ISCEQIYSDNVHRDKQGIYSVPLPFCEDP 1105
++ + W L++ P + P++ +S S PL
Sbjct: 209 FTQGLNILE-W-LEN-PSNT-----PDKDYLLSIP--------------ISCPL------ 240
Query: 1106 KQLGDSLNIALKRFSHLEKKLDSNINLRCDYNQAMTDLIDNGFMVKCASLDQ--GDLNGY 1163
I + + +H ++V L G+L Y
Sbjct: 241 --------IGVIQLAH--------------------------YVVTAKLLGFTPGELRSY 266
Query: 1164 FIPHHVVTKPDSPSSKMRIVYDASTKTSSGKSLNDILHAGSKMYNDLFCILLKF-RLFPY 1222
++ +V + + S + K LF I ++ +P
Sbjct: 267 LKGATGHSQG--------LV--TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP- 315
Query: 1223 ALNGDITKMFLQIKLLSDYWKFQKILWRFSNKEKIDVYELRVVIFGTKASPYLA-----Q 1277
L +L D + N E + SP L+ Q
Sbjct: 316 -------NTSLPPSILEDSLE---------NNEGV-------------PSPMLSISNLTQ 346
Query: 1278 RTVKQLIDDESKNFPLACQ-YIGESLY--MDDCVIS-FPSQKEAIEFFNQTV-KLFASGG 1332
V+ ++ + + P Q I SL + V+S P +++ N T+ K A G
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEI--SLVNGAKNLVVSGPP---QSLYGLNLTLRKAKAPSG 401
Query: 1333 FRFTKWSSNSPEILEQ--IPIHDRLAEMVSW---------HTD---DFSHKILGMLWNTS 1378
L+Q IP +R S H+ S I L
Sbjct: 402 -------------LDQSRIPFSER-KLKFSNRFLPVASPFHSHLLVPASDLINKDLV--- 444
Query: 1379 SDSLFFKINGLSKPL--TKRGHT-RVNFGLLAPVILWAKLLIRELCILKLDWDSI---PP 1432
+++ F + P+ T G RV G ++ ++ + L + W++
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER------IVDCIIRLPVKWETTTQFKA 498
Query: 1433 PHLV 1436
H++
Sbjct: 499 THIL 502
Score = 59.7 bits (144), Expect = 1e-08
Identities = 73/492 (14%), Positives = 144/492 (29%), Gaps = 184/492 (37%)
Query: 1197 NDILHAGSKMYNDLFCILLKFRLFPYALNGDITKMFLQIK-LLSDYWK--------FQK- 1246
NDI HA L + ++ K L+ +Y F K
Sbjct: 99 NDI-HA-----------------LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 1247 ---ILWRFSNKEKIDVYELRVVIFG--TKASPYLAQRTVKQLIDDESKNFPLACQYIGES 1301
L+R + + IFG Y +E L
Sbjct: 141 SNSALFRAVGEGNAQLV----AIFGGQGNTDDYF----------EE-----LR------D 175
Query: 1302 LYMDDCVISFPSQKEAIEFFNQTV-----------KLFASGGFRFTKWSSNSPEILEQIP 1350
LY + I+F +T+ K+F + G +W N P
Sbjct: 176 LY----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-TQGLNILEWLENP----SNTP 226
Query: 1351 IHDRLAEM-VSW---HTDDFSH-----KILGMLWNTSSDSLFFKINGLSKPLTKRGHTRV 1401
D L + +S +H K+LG + L + G + GH++
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF----TPGELRSYLKGAT------GHSQ- 275
Query: 1402 NFGLLAPVIL-----WAKLLIRELCILK-LDW------DSIP----PPHLVQLWQTFQAQ 1445
GL+ V + W + + L + ++ P PP +++
Sbjct: 276 --GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 1446 LP----LLESLAFPRHIGVYLRRKNKMGKPQNVDKDDKI---LMNGFSKPRRNGRHFVIL 1498
+P + +L + Y+ + N ++ ++ L+NG + + V+
Sbjct: 334 VPSPMLSISNLT-QEQVQDYVNKTN-----SHLPAGKQVEISLVNG---AK----NLVV- 379
Query: 1499 LRRLVEKTG------GLKIQFKNTSSSTNLFRFREVGS---LVYYDSY------FNEIY- 1542
+G GL + + + + L + R S L + + + F+
Sbjct: 380 -------SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 1543 -------ISRRERENSCIESS----------TGRGL--LAPVILWAKLLIRELCILKLDW 1583
+ N + G L L+ I + ++ + L + W
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS--ERIVDCIIRLPVKW 490
Query: 1584 DSI---PPHHLV 1592
++ H++
Sbjct: 491 ETTTQFKATHIL 502
Score = 53.5 bits (128), Expect = 7e-07
Identities = 97/616 (15%), Positives = 174/616 (28%), Gaps = 260/616 (42%)
Query: 415 PAPTPAPA----PISPIS--------CGIKLQPLEIPTFDG---ACIGNWPLFIEMY--R 457
P PT A P +P ++P ++ FD C+ F Y
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEG 98
Query: 458 INIH---------NRTDLTNAHKL--QYLLSKLSGGALAVAAGIPPTEHNYQVIYDALLE 506
+IH N T L +L Y+ A P + AL
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYIT--------ARIMAKRPFDKKSN---SALFR 147
Query: 507 KYDDKRNLATY-----------YMDSLLN-FKTQSGSLETFIDYFGANV---------AQ 545
+ N Y + L + ++T + I + + A+
Sbjct: 148 AVGEG-NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 546 VIY----DAL--LEKYDDKRNLATYYMDS------------LLNFKI------------- 574
++ + L LE + + Y+ S L ++ +
Sbjct: 207 KVFTQGLNILEWLENPSNTPD--KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 575 --------------------QSGSLETFIDYFGANVAALKALDLPNLSEFFLFYLG---- 610
++ S E+F + KA+ + LF++G
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFV------SVRKAITV-------LFFIGVRCY 311
Query: 611 ----NSKLDESTRKQFELSLGKHE-IPT---------FHKLLEFAQNHNKILNRLQCL-- 654
N+ L S + SL +E +P+ ++ ++ N L + +
Sbjct: 312 EAYPNTSLPPSILED---SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 655 ---NSG-----TGSCENSTRVRPKIQHTASKRGTSHTFVMRGNMCVLCSEEHPLFKCNKF 706
N +G ++ + ++ + G + R + SE F N+F
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS---R----IPFSERKLKFS-NRF 420
Query: 707 LKLSPQERYGVVKQHDLCVNCLGTGHKANNCPSKSNCNICQFRHNTLLHFNRNGQVSTKS 766
L ++ P F H+ LL
Sbjct: 421 LPVA--------------------------SP---------F-HSHLL------------ 432
Query: 767 ASACNNLVQPLSADNVPGTSA--------TNVAS--QCMSLSLVVCLVDL---KPVKPSK 813
A + + + L +NV + T S + +S S+ +VD PV
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV---- 488
Query: 814 LGEWTGQLEL-CSHQASPLYLGLLLAFG---LSGLRRNIHYTSFTSQPKHYNGDQGTTQT 869
+W + +H +L FG SGL T + K GT
Sbjct: 489 --KWETTTQFKATH---------ILDFGPGGASGL------GVLTHRNK-----DGTGVR 526
Query: 870 TVLLGTVKILVLDVYG 885
++ GT+ I D YG
Sbjct: 527 VIVAGTLDINPDDDYG 542
Score = 50.4 bits (120), Expect = 6e-06
Identities = 67/473 (14%), Positives = 151/473 (31%), Gaps = 134/473 (28%)
Query: 44 SPSHL---FNTFVANRISKIQQNMKVDSLYHVSGTENPADGLSRGLLPNQFIDYKIYFSG 100
+P+ L F +V++ + D + L +F + Y G
Sbjct: 56 TPAELVGKFLGYVSSLVEP--------------SKVGQFDQVLNLCL-TEFEN--CYLEG 98
Query: 101 ------PSWLTEDVESWP------IRSYSEFKNHEDIPEQKTVSSVVLAGVENLNNEFLD 148
+ L ++ ++ I++Y + P K +S + V N + +
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 149 IF----SVESW--PIRS-YSEFKNHEDIPEQKTVSSVVLVGVENLNNEFLDIFSRFSSYP 201
IF + + + +R Y + V ++ E L+ +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVL--------VGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 202 KLLNVMVYVLRFAKILTSKGFISAQDLNLTESV---VIKIIQNHHFKDIIDKDLNLAESV 258
+ LN++ + L + +D L+ + +I +IQ H+ + K L
Sbjct: 211 QGLNILEW-------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYV-VTAKLLGFTPGE 262
Query: 259 VIKIIQ--NHHFKDIID----KQSTEGDIGYLNLLHSILILKW---HCFKCILRRADPVQ 309
+ ++ H + ++ ++ + ++++ +I +L + C++ + P
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 310 MM--------GQP---LVVNSFIAIRATFILQYFKQ-NRVLGENCLISF----GKRKF-- 351
++ G P L +++ + + Y + N L + G +
Sbjct: 323 ILEDSLENNEGVPSPMLSISN---LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 352 --------GTVLAARYHSSSSTM----VVAQEKKYR-----LAISSPISGFSSSSFPVNR 394
G L R + S + + E+K + L ++SP F S
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP---FHSH------ 430
Query: 395 VEEMVGYIKYKDGELAKPPPPAPTPAPAPISPISCGIKLQPLEIP---TFDGA 444
L PA + + + ++IP TFDG+
Sbjct: 431 ------L-------LV----PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Score = 47.4 bits (112), Expect = 6e-05
Identities = 98/613 (15%), Positives = 175/613 (28%), Gaps = 214/613 (34%)
Query: 566 MD--SLLNFKIQSGSLETFID-----YFGANVAALK---ALDLPNLSEFF---------- 605
MD S + GSLE + +F A+ L+ LP +E F
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQ--LQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 606 -LF--YLG--NSKLDESTRKQ-----------FELS-LGKHEIPTF-HKLLEFAQNHNKI 647
L +LG +S ++ S Q FE L ++I KLL+ +N +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ--ENDTTL 116
Query: 648 LNRLQCLNSGTGSCENSTRVRPKIQH----TASKRGTSHTFVM---RGNMCVLCSEE--- 697
+ + + + + + R K + A G + + +GN EE
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD-YFEELRD 175
Query: 698 -----HPLFKCNKFLKLSPQERYGVVKQHDLCVNCLGTG-------HKANNCPSKSN--- 742
H L +K S + +++ G +N P K
Sbjct: 176 LYQTYHVLVG--DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 743 ----CNI---CQFRHNTLLHFNRNGQVSTKSASACNNL-VQPLS-ADNVPGTSATN---V 790
C + Q L H+ L P + G + + V
Sbjct: 234 IPISCPLIGVIQ-----LAHY----------VVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 791 ASQCMSLSLVVCLVDLKPVKPSKLGEWTGQLELCS-HQASPLYLGLLLAFGLSGLRRNIH 849
+ ++ + W S + + +L F + G+R
Sbjct: 279 TAVAIAET----------------DSWE------SFFVSVRKAITVL--FFI-GVR---- 309
Query: 850 YTSFTSQPKHYNGDQGTTQTTVLLGTVKILVLDVYGKPHEMRFLLDCASMSNILSLSACK 909
+ T++ ++ + + G P M LS+S
Sbjct: 310 -----CY-------EAYPNTSLPPSILEDSLENNEGVPSPM------------LSIS--- 342
Query: 910 QLGLKTLFVATDLKGVGSISSPVQGQVTMRFGSRFDKRYNYTI----KALV-VNHVVDKL 964
L V + S P QV + S + N + ++L +N + K
Sbjct: 343 --NLTQEQVQDYVNKTNS-HLPAGKQVEI---SLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 965 PVKS-VDLSKLEYLQNIRHKLADDEFM---EPGNICGILGAQIY--PYLVSGDPLLGKDC 1018
S +D S++ + + R + F+ P + LV L+ KD
Sbjct: 397 KAPSGLDQSRIPFSE--RKLKFSNRFLPVASP-----------FHSHLLVPASDLINKDL 443
Query: 1019 -NQPAAIN-STLGYVVLGNAPVLDTEHHEKQYCMFQCD-LDKFWELDSVPESKTGKLSPE 1075
+ N + PV DT D D L + S + ++
Sbjct: 444 VKNNVSFNAKDIQ------IPVYDTF-----------DGSD----LRVLSGSISERI--- 479
Query: 1076 EISCEQIYSDNVH 1088
+ I V
Sbjct: 480 ---VDCIIRLPVK 489
Score = 38.9 bits (90), Expect = 0.019
Identities = 39/198 (19%), Positives = 74/198 (37%), Gaps = 73/198 (36%)
Query: 847 NIHYTSFTSQPKHYNGDQGT---TQTT-VLLGTVKILVLDVY----GKPHEMRF----L- 893
N H TS+T + ++G TQ T L ++ + P + F L
Sbjct: 1711 NEHSTSYT-----FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 894 ----LDCASMSNILSLSACKQLGLKTLF---------VATDLKGVGSIS----SPVQGQV 936
L AS+++++S+ + ++ +F V D G + +P G+V
Sbjct: 1766 EYAAL--ASLADVMSIES----LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP--GRV 1817
Query: 937 TMRFG--------SRFDKR---------YN-----Y----TIKAL-VVNHVVDKLPVKSV 969
F R KR YN Y ++AL V +V++ + ++ +
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 970 DLSKLE---YLQNIRHKL 984
D+ +L+ L+ + L
Sbjct: 1878 DIIELQKSLSLEEVEGHL 1895
Score = 31.9 bits (72), Expect = 2.5
Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 42/153 (27%)
Query: 950 YTIKALVVNHVVDKLPVKS-VDLSKL--EYLQNI--RHKLADDEF-M---EPGNICGILG 1000
Y AL + D + ++S V++ +Q R +L + M PG +
Sbjct: 1767 YA--ALA--SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 1001 AQIYPYLVSGDPLLGKDCN---QPAAINSTLG--YVVLGNAPVLDT-----EHHEKQYCM 1050
+ Y+V +GK + N YV G+ LDT + Q
Sbjct: 1823 QEALQYVVER---VGKRTGWLVEIVNYNVE-NQQYVAAGDLRALDTVTNVLNFIKLQ--- 1875
Query: 1051 FQCDLDKFWELDSVPESKTGKLSPEEISCEQIY 1083
+ D+ + + +S LS EE+ ++
Sbjct: 1876 -KIDIIE------LQKS----LSLEEVE-GHLF 1896
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding,
exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Length = 124
Score = 37.1 bits (85), Expect = 0.011
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 719 KQHDLCVNCLGTGHKANNCPSKSNCNIC 746
+ C NC GH +CP C+ C
Sbjct: 2 EAAPKCNNCSQRGHLKKDCPHII-CSYC 28
Score = 32.8 bits (74), Expect = 0.27
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 7/87 (8%)
Query: 686 MRGNMCVLCSEEHPLFKCNKFLKLSPQERYGVVKQHDLCVNCLGTGHKANNCPSKSNCNI 745
+ C + KC++ Q + + C C H CPS I
Sbjct: 31 TDDHYSRHCPKAIQCSKCDEVGHYRSQCPHK--WKKVQCTLCKSKKHSKERCPSIWRAYI 88
Query: 746 CQFRHNTLLHFNRNGQVSTKSASACNN 772
+ + + + C N
Sbjct: 89 LVDDN----EKAKPKVLPFHTIY-CYN 110
Score = 32.4 bits (73), Expect = 0.35
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 721 HDLCVNCLGT-GHKANNCPSKSNCNIC-QFRH 750
H +C C T H + +CP C+ C + H
Sbjct: 22 HIICSYCGATDDHYSRHCPKAIQCSKCDEVGH 53
Score = 30.9 bits (69), Expect = 1.5
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 673 HTASKRGTSHTFVMRGNMCVLC-SEEHPLFKCNKFLKLS-------PQERYGVVKQHDLC 724
H S+ + C LC S++H +C + + + C
Sbjct: 53 HYRSQCPHKW----KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYC 108
Query: 725 VNCLGTGHKANNCPSK 740
NC G GH ++C K
Sbjct: 109 YNCGGKGHFGDDCKEK 124
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 63
Score = 34.5 bits (79), Expect = 0.017
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 719 KQHDLCVNCLGTGHKANNC---PSKSNCNICQ 747
D C NC G H A C P C+ CQ
Sbjct: 5 SSGDRCYNCGGLDHHAKECKLPPQPKKCHFCQ 36
Score = 29.1 bits (65), Expect = 1.8
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 687 RGNMCVLCSEE-HPLFKCNKFLKLSPQERYGVVKQHDLCVNCLGTGHKANNCPSKSN 742
G+ C C H +C KL PQ + C C H +CP K+
Sbjct: 6 SGDRCYNCGGLDHHAKEC----KLPPQPKK--------CHFCQSISHMVASCPLKAQ 50
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA
complex; NMR {Homo sapiens}
Length = 74
Score = 34.2 bits (78), Expect = 0.038
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 724 CVNCLGTGHKANNC---PSKSNCNICQ 747
C NC G H A C P C+ CQ
Sbjct: 27 CYNCGGLDHHAKECKLPPQPKKCHFCQ 53
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer,
retroviral protease domain, protein turnover; HET: DNA;
2.30A {Saccharomyces cerevisiae}
Length = 148
Score = 35.1 bits (80), Expect = 0.062
Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 874 GTVKILVLDVYGKPHEMRFLLDCASMSNILSLSACKQLGLKTLF-VATDLKGVGSISSPV 932
V +L +++ + ++ +D + + I+S K+ GL + + G + +
Sbjct: 22 TQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKI 81
Query: 933 QGQVTM 938
G++
Sbjct: 82 IGRIHQ 87
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding
protein, retrovirus, viral protein; NMR {Mason-pfizer
monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Length = 60
Score = 32.6 bits (74), Expect = 0.10
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 701 FKCNK---FLK--LSPQERYGVVKQHDLCVNCLGTGHKANNCPSKSNCN 744
FKC K F K K LC C H AN C SK++
Sbjct: 5 FKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKTDNQ 53
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA
complex; NMR {Rous sarcoma virus}
Length = 61
Score = 30.6 bits (69), Expect = 0.45
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 7/31 (22%)
Query: 724 CVNCLGTGHKANNCPS-------KSNCNICQ 747
C C GH CP + C +C
Sbjct: 7 CYTCGSPGHYQAQCPKKRKSGNSRERCQLCN 37
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein,
retrovirus zinc finger-like domains; NMR {Equine
infectious anemia virus}
Length = 37
Score = 29.5 bits (66), Expect = 0.57
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 724 CVNCLGTGHKANNCPSKSNCNIC 746
C NC GH ++ C + C C
Sbjct: 3 CYNCGKPGHLSSQCRAPKVCFKC 25
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 77
Score = 29.7 bits (67), Expect = 1.2
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 26/93 (27%)
Query: 659 GSCENSTRVRPKIQHTASKRGTSHTFVM----RGNMCVLCSEEHPLFKCNKFLKLSPQER 714
GS +S + R I+ H F + C +C E F+
Sbjct: 1 GSSGSSGQRRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHE---------FV------- 44
Query: 715 YGVVKQHDLCVNCLGTGHK------ANNCPSKS 741
+G+ KQ C C HK C +
Sbjct: 45 WGLNKQGYQCRQCNAAIHKKCIDKVIAKCTGSA 77
>1o7d_E Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
b.30.5.6
Length = 126
Score = 30.8 bits (69), Expect = 1.4
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 388 SSFPVNRVEEMV---GYIKYKDGELAKPPPPAPTPAPAPISPISCGIKLQPLEIPTF 441
S+F + + E + L PTP P+P P+S I LQP+EI TF
Sbjct: 60 SAFTITNLRETTLAANQLLAYASRLQWTTDTGPTPHPSPSRPVSATITLQPMEIRTF 116
>4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB:
4dmw_A* 3ss1_A 3srz_A
Length = 556
Score = 32.0 bits (71), Expect = 2.3
Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 4/124 (3%)
Query: 437 EIPTFDGACIGNWPLFIEMYRINIHNRTDLTNAHKLQYLLSKLSGGAL--AVAAGIPPTE 494
E+ I W Y I + ++ + L+ + + S + I +
Sbjct: 120 EVSDIALEYIKQWADINAEYNIKLWYDSEAFLVNTLKKAIVESSTTEALQLLEEEIQNPQ 179
Query: 495 HNYQVIYDALLEKYDDKRNLATYYMDSLLNFKTQSGSLETFIDYFGANVAQVIYDALLEK 554
+ Y +E D++ Y S +N T + + + + + +LE
Sbjct: 180 FDNMKFYKKRMEFIYDRQKRFINYYKSQINKPTVPTIDDIIKSHLVSEYNR--DETVLES 237
Query: 555 YDDK 558
Y
Sbjct: 238 YRTN 241
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA
surveillance binds to TRF4P/AIR2P heterodimer; 2.70A
{Saccharomyces cerevisiae}
Length = 83
Score = 28.8 bits (64), Expect = 3.3
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 691 CVLC-SEEHPLFKC----NKFLKLSPQER---YGVVKQHDLCVNCLGTGHKANNCPSKSN 742
C LC S++H +C ++ + E+ + C NC G GH ++C K +
Sbjct: 8 CTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKRS 67
Query: 743 CNIC 746
+
Sbjct: 68 SRVP 71
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 3.4
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
Query: 471 KLQYLLSKL----SGGALAVAAGI 490
KLQ L KL S ALA+ A +
Sbjct: 24 KLQASL-KLYADDSAPALAIKATM 46
Score = 29.9 bits (66), Expect = 4.4
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 26/52 (50%)
Query: 978 QNIRHKLADDEFMEPGNICGILGAQIYPYLVSGDPLLGKDCNQPA-AINSTL 1028
Q ++ KL + A + Y D + PA AI +T+
Sbjct: 20 QALK-KL------Q---------ASLKLY----AD----D-SAPALAIKATM 46
Score = 29.5 bits (65), Expect = 5.0
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
Query: 1314 QKEAIEFFNQTVKLFASGGFRFTKWSSNSPEI 1345
+K+A++ ++KL+A ++P +
Sbjct: 18 EKQALKKLQASLKLYADD---------SAPAL 40
Score = 29.5 bits (65), Expect = 6.3
Identities = 5/29 (17%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 1254 KEKIDVYELRVVIFGTKASPYLA-QRTVK 1281
K+ + + + ++ ++P LA + T++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron
transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Length = 556
Score = 31.3 bits (68), Expect = 3.5
Identities = 19/217 (8%), Positives = 47/217 (21%), Gaps = 17/217 (7%)
Query: 627 GKHEIPTFHKLLEFAQNHNKILNRLQCLNSGTGSCENSTRVRPK---IQHTASKRGTSHT 683
+ + + + L + G + K H + ++
Sbjct: 257 MQAKFKVVRDVPRLERGQPDAAMVLPVVGPGAKDTPKGMKGAMKPVAFNHKVHEAASNTC 316
Query: 684 FVMRGNMCVLCSEEHPLFKCNKFLKLSPQERYGVVKQHDLCVNCLGTGHKANNC------ 737
C+ H L + ++ CV C +A C
Sbjct: 317 RACHHVKIDNCTTCHTLEGVKDGNFVQIEKAMHQPDSMKSCVGCHNQKVQAPACAGCHGF 376
Query: 738 -------PSKSNCNICQFRHNTL-LHFNRNGQVSTKSASACNNLVQPLSADNVPGTSATN 789
++ C +C + +G + + ++ A
Sbjct: 377 MKTGAKPQPEAACGVCHADPVGMDAKTVADGGLLKATKEQRADVAAATLAARRTTKGTLP 436
Query: 790 VASQCMSLSLVVCLVDLKPVKPSKLGEWTGQLELCSH 826
+++ V +P K +
Sbjct: 437 ADDIPEFVTIGVLSDKYEPSKLPHRKIVNTLMAAIGD 473
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 31.0 bits (70), Expect = 4.2
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 501 YDALLEKYDDKRNLATYYMDSLLNFKTQSGSLETFIDYFG-ANVAQVIYDALLEKYDDKR 559
D + +K A ++L+F + F + + + +Y K
Sbjct: 260 DDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKE 319
Query: 560 NLATYYMDS 568
NL T ++D+
Sbjct: 320 NLIT-FIDN 327
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 30.6 bits (69), Expect = 5.3
Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 20/79 (25%)
Query: 500 IYDALLEKYDDKRNLATYYMDSLLN----------FKTQSGSLETFIDYFGANVAQVIYD 549
+ + E + A SLL+ F+ + ++ + +
Sbjct: 258 WFLGVNEVSPENHKFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKA---------MLE 308
Query: 550 ALLEKYDDKRNLATYYMDS 568
Y + T ++D+
Sbjct: 309 GSAADYAQVDDQVT-FIDN 326
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural
genomics consortiu retropepsin-like domain, protein
turnover, hydrolase; 1.70A {Homo sapiens}
Length = 148
Score = 29.3 bits (65), Expect = 5.3
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 874 GTVKILVLDVYGKPHEMRFLLDCASMSNILSLSACKQLGLKTL 916
G V +L ++ H ++ +D + I+S + ++ + L
Sbjct: 20 GQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRL 62
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 30.6 bits (68), Expect = 5.7
Identities = 7/51 (13%), Positives = 14/51 (27%)
Query: 385 FSSSSFPVNRVEEMVGYIKYKDGELAKPPPPAPTPAPAPISPISCGIKLQP 435
S S+F N + ++ P +P P + +
Sbjct: 9 LSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAA 59
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 30.2 bits (68), Expect = 6.8
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 500 IYDALLEKYDDKRNLATYYMDSLLNFKTQSGSLETFIDYFG--ANVAQVIYDALLEKYDD 557
+ + E + A SLL+F+ + + Q+I D YD+
Sbjct: 254 WFLSENEVDANNHYFANESGMSLLDFRFGQKLRQVLRNNSDNWYGFNQMIQD-TASAYDE 312
Query: 558 KRNLATYYMDS 568
+ T ++D+
Sbjct: 313 VLDQVT-FIDN 322
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 30.0 bits (67), Expect = 9.7
Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 17/120 (14%)
Query: 652 QCLNSGTGSCENSTRVRPKIQHTASKRGTSHTFVMRGNMCVLCSEEHPLFKCNKFLKLSP 711
+C T SC + + + + HT+ C C L
Sbjct: 78 RCHEFVTFSCPGADKGPASDDPRSKHKFKIHTY-SSPTFCDHCGS---------LL---- 123
Query: 712 QERYGVVKQHDLCVNCLGTGHKANNCPSKSNCNICQFRHNTLLHFNRNGQVSTKSASACN 771
YG++ Q C C+ HK S C ++ + +
Sbjct: 124 ---YGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDREVLIVVVRD 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 26,178,400
Number of extensions: 1585644
Number of successful extensions: 3144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3110
Number of HSP's successfully gapped: 51
Length of query: 1738
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1631
Effective length of database: 3,714,246
Effective search space: 6057935226
Effective search space used: 6057935226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)