RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15380
         (1738 letters)



>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency
           virus type 1, different isolates [TaxId: 11676]}
          Length = 42

 Score = 31.4 bits (71), Expect = 0.050
 Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 2/26 (7%)

Query: 724 CVNCLGTGHKANNCPSKSN--CNICQ 747
           C NC   GH A NC +     C  C 
Sbjct: 4   CFNCGKEGHTARNCRAPRKKGCWKCG 29


>d1cvra1 b.1.18.12 (A:351-432) Gingipain R (RgpB), C-terminal domain
            {Porphyromonas gingivalis [TaxId: 837]}
          Length = 82

 Score = 32.0 bits (72), Expect = 0.078
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 1127 DSNINLRCDYNQAMTDLIDNGFMVKCASLDQG 1158
                 + CDYN A+  L D+G MV  A +  G
Sbjct: 16   AQTFEVACDYNGAIATLSDDGDMVGTAIVKDG 47


>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine
           leukemia virus, MoMLV [TaxId: 11801]}
          Length = 40

 Score = 28.4 bits (63), Expect = 0.63
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 721 HDLCVNCLGTGHKANNCPSK 740
            D C  C   GH A +CP K
Sbjct: 10  RDQCAYCKEKGHWAKDCPKK 29


>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
           N-terminal domain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 239

 Score = 28.5 bits (63), Expect = 6.2
 Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 32/189 (16%)

Query: 532 LETFIDYFGANVAQVIYDALLEKYDDKRNLATYYMDSLLNFK--IQSGSLETFIDYFGAN 589
           L  F ++F     +      +EKY + R++   Y+D L  F   +    +E   D   A 
Sbjct: 7   LTKFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLD-LEMFDPDLADLLIEKPDDVIRAA 65

Query: 590 VAALKALDLPNLSEFFLFYLGNSKLDESTRKQFELSLGKHEIPTFHKLLEFAQNHNKILN 649
             A++ +D                     RK  +L++    I     L E          
Sbjct: 66  QQAIRNID-------------------RLRKNVDLNIRFSGISNVIPLRELRSKF----- 101

Query: 650 RLQCLNSGTGSCENSTRVRPKIQ---HTASKRGTSHTFVMRGNMCVLCSEEHPLFKCNKF 706
            +    +  G    +  +RP+I             H      NM    S          F
Sbjct: 102 -IGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLC-SECGGRSF 159

Query: 707 LKLSPQERY 715
             L  +  +
Sbjct: 160 RLLQDESEF 168


>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
            1542]}
          Length = 540

 Score = 28.7 bits (64), Expect = 7.4
 Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 1243 KFQKILWRFSNKEKIDVYELRVVIFGTKASPYLAQRTVKQLIDDESKNFPLACQYIGESL 1302
              +  + + S+K  I+  + +  I               +LI    +   +  + + ++ 
Sbjct: 141  TLKTAIIQESSKVIIE--QNQSNILDGTYGHNKFYSDRMKLIYRYKRELKMLYENMKQNN 198

Query: 1303 YMDDCVISFPSQK-----EAIEFFNQTVK 1326
             +DD +I+F S         +    +   
Sbjct: 199  SVDDIIINFLSNYFKYDIGKLNNQKENNN 227


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,453,626
Number of extensions: 311917
Number of successful extensions: 746
Number of sequences better than 10.0: 1
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 7
Length of query: 1738
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1640
Effective length of database: 1,062,056
Effective search space: 1741771840
Effective search space used: 1741771840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.4 bits)