BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15384
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99436|PSB7_HUMAN Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1
Length = 277
Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 139/229 (60%), Gaps = 7/229 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI G++Y+DG++LGADTRAT ++ D NCSKI+ +S IYCCGAG+AAD
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTD 96
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
+ L+ +NLE V+ M+KQ L++Y GY+ A ++GG+D G L+S
Sbjct: 97 MTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYS 155
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I+ HGS+ + MG+G AM + E ++ ++ E+E L+ +AI AGI DLGSGS
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSN 215
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
+D+ +I KN ++ +PY V + + + + GTT VL+ ++ P+E
Sbjct: 216 IDLCVISKN-KLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLE 263
>sp|Q9JHW0|PSB7_RAT Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1
SV=1
Length = 277
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 139/229 (60%), Gaps = 7/229 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI G++Y+DG++LGADTRAT ++ D NCSKI+ +S IYCCGAG+AAD
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTD 96
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
+ L+ +NLE V+ M+KQ L++Y GY+ A ++GG+D G L+S
Sbjct: 97 MTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYS 155
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I+ HGS+ + MG+G AM + E ++ ++ E+E L+ +AI AGI DLGSGS
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
+D+ +I K+ ++ +PY V + + + + GTT VL+ +V P+E
Sbjct: 216 IDLCVISKS-KLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTPLE 263
>sp|P70195|PSB7_MOUSE Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1
Length = 277
Score = 167 bits (424), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 139/229 (60%), Gaps = 7/229 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI G++Y+DG++LGADTRAT ++ D NCSKI+ +S IYCCGAG+AAD
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTD 96
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
+ L+ +NLE V+ M+KQ L++Y GY+ A ++GG+D G L+S
Sbjct: 97 MTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYS 155
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I+ HGS+ + MG+G AM + E ++ ++ E+E L+ +AI AGI DLGSGS
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
+D+ +I K+ ++ +P+ V + + + + GTT VL+ +V P+E
Sbjct: 216 IDLCVISKS-KLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPLE 263
>sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1
Length = 261
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 6/228 (2%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI G+ + +GV++ ADTR+T I+ D NC+K++R+S KI+C GAG+AAD +
Sbjct: 28 TGTTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTE 82
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ L+ +N+E + V+ + M+KQ L+KY G++ I+ G+D G + LFS
Sbjct: 83 AVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTG-SHLFS 141
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I HGS+ + ++G+G AM +LE+ WK++L+++E + L DAI+AGI DLGSGS
Sbjct: 142 IHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSN 201
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
VDV ++ + Y + R K P GTT VL ++ I
Sbjct: 202 VDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNI 249
>sp|Q2TBP0|PSB7_BOVIN Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1
Length = 277
Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 137/229 (59%), Gaps = 7/229 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI G++Y+DG++LGADTRAT ++ D NCSKI+ +S IYCCGAG+AAD
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTD 96
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
+ L+ +NLE V+ M+KQ L++Y GY+ A ++GG+D G L+S
Sbjct: 97 MTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYS 155
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I+ HGS+ + MG+G AM + E ++ ++ E+E L+ +AI AGI DLGSGS
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
+D+ +I K+ ++ +PY V + + + + GT VL+ +V +E
Sbjct: 216 IDLCVISKS-KLDFLRPYSVPNKKGTRFGRYRCEKGTNAVLTEKVTTLE 263
>sp|A1XQU1|PSB7_PIG Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2
Length = 277
Score = 163 bits (413), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 137/229 (59%), Gaps = 7/229 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI G++Y+DG++LGADTRAT ++ D NCSKI+ +S IYCCGAG+AAD
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTD 96
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
+ L+ +NLE V+ M+KQ L++Y GY+ A ++GG+D G L+S
Sbjct: 97 MTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYS 155
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I+ HGS+ + MG+G AM + E ++ + E+E L+ +AI AGI DLGSGS
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSN 215
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
+D+ +I K+ ++ +PY V + + + + GTT VL+ +V ++
Sbjct: 216 IDLCVISKS-KLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTALD 263
>sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2
PE=1 SV=2
Length = 274
Score = 160 bits (405), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 137/231 (59%), Gaps = 7/231 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI GL+++DGVILGADTRAT I+ D NC KI+ ++ IYCCGAG+AAD +
Sbjct: 38 TGTTIVGLIFKDGVILGADTRATE-----GPIVADKNCEKIHYMAPNIYCCGAGTAADTE 92
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ +V + L + D V+ +T++K+ L+ Y G++ A ++GG+D G L +
Sbjct: 93 AVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDIT-GPHLHT 151
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I+ HGS+ F MG+G AM + EA +KE L+ EG+ L+ +AI +GI DLGSGS
Sbjct: 152 IYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSN 211
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK 232
VD+ +I K G + Y + R + T+VL T++ P+ ++
Sbjct: 212 VDICVITK-GHKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLER 261
>sp|Q3T0T1|PSB10_BOVIN Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1
Length = 273
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 134/231 (58%), Gaps = 13/231 (5%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI GL+++DGVILGADTRAT S++ D C KI+ ++ KIYCCGAG AAD +
Sbjct: 38 TGTTIAGLVFQDGVILGADTRAT-----NDSVVADKICEKIHFIAPKIYCCGAGVAADAE 92
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
+ + +N+E + V M++QTL++Y GY+ + I+GG+D G QL+S
Sbjct: 93 MTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVDFT-GPQLYS 151
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ HGS F A+G+G A+ +LE ++ N++ + L+V+AI AGIL DLGSG
Sbjct: 152 VHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGN 211
Query: 182 VDVTIIRKNGQVSSYKPYKVLSD---RMPKCVQCIIPLGTTKVLSTQVIPI 229
VD +I G K + LS + + Q GTT VLS V+P+
Sbjct: 212 VDACVITAAGA----KMLRALSSPTKPIERSSQYRFAPGTTPVLSQTVVPL 258
>sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1
PE=1 SV=2
Length = 273
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 137/231 (59%), Gaps = 7/231 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI GL+++DGVILGADTRAT I+ D NC KI+ ++ IYCCGAG+AAD +
Sbjct: 38 TGTTIVGLIFKDGVILGADTRATE-----GPIVADKNCEKIHYMAPNIYCCGAGTAADTE 92
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ +V + L + D VI +T++K+ L+ Y G++ A ++GG+D G L +
Sbjct: 93 AVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVDIT-GPHLHT 151
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I+ HGS+ F MG+G AM + EA +KE L+ EG+ L+ ++I +GI DLGSGS
Sbjct: 152 IYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSN 211
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK 232
VD+ +I K G + Y + R + T+VL T++ P+ ++
Sbjct: 212 VDICVITK-GNKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLER 261
>sp|Q54QR2|PSB7_DICDI Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7
PE=3 SV=1
Length = 266
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 141/231 (61%), Gaps = 7/231 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI G++Y+ GV+LGADTRAT I+ D NC KI+ +++ IYCCGAG+AAD +
Sbjct: 33 TGTTIVGVVYKGGVVLGADTRAT-----EGPIVADKNCEKIHYIADNIYCCGAGTAADTE 87
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
+ L+ + L+ VI +TM+KQ L+KY G++ A I+GGID G L +
Sbjct: 88 SATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGID-INGPSLHT 146
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I+ HGS+ + MG+G AM + EA +K +++++E + L+ +AI +GI DLGSGS
Sbjct: 147 IYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSN 206
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK 232
VDVT+I +G V+ + Y+ ++R + I GTT VL + P+ K
Sbjct: 207 VDVTVIEPSG-VTVLRNYQTPNERKFRNNPYIFKQGTTPVLKQDIAPLSTK 256
>sp|P40306|PSB10_HUMAN Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1
Length = 273
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI GL+++DGVILGADTRAT S++ D +C KI+ ++ KIYCCGAG AAD +
Sbjct: 38 TGTTIAGLVFQDGVILGADTRAT-----NDSVVADKSCEKIHFIAPKIYCCGAGVAADAE 92
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
+ +V + +E + V +++QTL++Y G++ + I+GG+D G QL+
Sbjct: 93 MTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLT-GPQLYG 151
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ HGS F A+G+G A+ +LE ++ N++ + L+V+A+ AGIL DLGSG
Sbjct: 152 VHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGN 211
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQC----IIPLGTTKVLSTQVIPI 229
VD +I K G K + LS + +P GTT VL+ V P+
Sbjct: 212 VDACVITKTGA----KLLRTLSSPTEPVKRSGRYHFVP-GTTAVLTQTVKPL 258
>sp|O35955|PSB10_MOUSE Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1
Length = 273
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 7/228 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI GL++ DGVILGADTRAT S++ D +C KI+ ++ KIYCCGAG AAD +
Sbjct: 38 TGTTIAGLVFRDGVILGADTRAT-----NDSVVADKSCEKIHFIAPKIYCCGAGVAADTE 92
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
+ + + +E + V +++QTL++Y G++ + ++GG+D G QL+
Sbjct: 93 MTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYE 151
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ HGS F A+G+G A+ +LE ++ N++ + L+V+AI AGIL DLGSG
Sbjct: 152 VHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGN 211
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
VD +I G + ++ + + + GTT VL+ +V P+
Sbjct: 212 VDACVITAGG-AKLQRALSTPTEPVQRAGRYRFAPGTTPVLTREVRPL 258
>sp|Q09841|PSB2_SCHPO Probable proteasome subunit beta type-2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup1 PE=2 SV=1
Length = 267
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 133/225 (59%), Gaps = 7/225 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI G++ +D ++LGADTRAT I+ D NC K++ +S I+C GAG+AAD +
Sbjct: 34 TGTTIVGVIAKDCIVLGADTRAT-----AGPIIADKNCKKLHLISPNIWCAGAGTAADTE 88
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ ++ +N+E + V+ +TM+KQ L++Y G++ ++GG D G + LF+
Sbjct: 89 FVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPH-LFT 147
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I HGSS + A+G+G A+ +LE ++ +L E + L+ +AI+AGI DLGSGS
Sbjct: 148 IAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSN 207
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQV 226
D+ +I + + + Y+ Y ++R K + GTT VL +
Sbjct: 208 CDLVVIDEE-KATPYRGYSKPNERATKQSKYTYDRGTTAVLKEDI 251
>sp|Q4KM35|PSB10_RAT Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2
SV=1
Length = 273
Score = 147 bits (371), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 116/190 (61%), Gaps = 6/190 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI GL++ DGVILGADTRAT S++ D +C KI+ ++ KIYCCGAG AAD +
Sbjct: 38 TGTTIAGLVFRDGVILGADTRAT-----NDSVVADKSCEKIHFIAPKIYCCGAGVAADTE 92
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
+ + + +E + V +++QTL++Y G++ + I+GG+D G QL+S
Sbjct: 93 MTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LNGPQLYS 151
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ HGS F A+G+G A+ +LE ++ N++ + L+V+AI AGIL DLGSG
Sbjct: 152 VHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGS 211
Query: 182 VDVTIIRKNG 191
VD +I G
Sbjct: 212 VDACVITAGG 221
>sp|Q8SQN7|PSB2_ENCCU Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PUP1 PE=1 SV=1
Length = 227
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 130/229 (56%), Gaps = 11/229 (4%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI G+ Y+ GVIL ADTR+T ++ D NC KI+++++KI CCGAG+AAD
Sbjct: 5 TGTTIVGMKYKTGVILAADTRSTQ-----GPVVSDKNCVKIHQITDKIMCCGAGTAADAS 59
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMI-KQTLYKYHGYLMCAFIIGGIDSAGGNQLF 120
R++ + L F + +P++ + Q L+KY G + A I+GGIDS G + L+
Sbjct: 60 RVARMASRELRL-FQNKYLRLPLVSHFRKVCTQHLHKYGGGIGAALIVGGIDSEGCH-LY 117
Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
I HGS + F ++G+G A+ LE+ ++ + + E + L DA+KAGIL DL SGS
Sbjct: 118 EIHPHGSENSALFVSLGSGSLGAIATLESRYRA-MDKDEAIDLACDAVKAGILNDLYSGS 176
Query: 181 KVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
+DV +I +G V + Y+ + + PL + ++ +V I
Sbjct: 177 NIDVCVIDYSG-VEFLRNYRRIG-VSENTDTLVYPLDSVRIKREEVFDI 223
>sp|O43063|PSB1_SCHPO Probable proteasome subunit beta type-1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pre3 PE=3 SV=1
Length = 226
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 5/189 (2%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
GTTI L Y+DGVIL AD+R TM + + + K+ +L++ I+CC +GSAAD +
Sbjct: 24 GTTITALRYKDGVILAADSRTTM-----GAYIANRVTDKLTQLTDNIWCCRSGSAADTQT 78
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSI 122
++ L++ L + D V T+ + Y+ L I+ G D G ++SI
Sbjct: 79 VADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSI 138
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
GS H G+G G +A ++EN++++E + + +A+ + D SG +
Sbjct: 139 PLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTI 198
Query: 183 DVTIIRKNG 191
+ I+ K+G
Sbjct: 199 RMVILNKDG 207
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 17/204 (8%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
GTT G++ +DGV+L AD RA++ +I+ N +KI+++ E + GAG D+
Sbjct: 10 GTTTVGIVCKDGVVLAADRRASL-----GNIIYARNVTKIHKIDEHLAIAGAGDVGDILN 64
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQTL--YKYHGYLMCAFIIGGIDSAGGNQLF 120
L L+ A + + ++ + V T++ + KY YL F++GG D +L+
Sbjct: 65 LVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYL-AWFLVGGYDEK--PKLY 121
Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
S+ G K+ G+G++ A IL++ +K+NL+ +EG+ L V AI I D+ SG
Sbjct: 122 SVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGD 181
Query: 181 KVDVTIIRKNGQVSSYKPYKVLSD 204
+ V I K G YK LSD
Sbjct: 182 GILVVTITKEG-------YKELSD 198
>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1
SV=2
Length = 233
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 5/196 (2%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
GTTI G+ Y GV+LGAD+R S + + KI +L++ +Y C +GSAAD +
Sbjct: 12 GTTIIGVTYNGGVVLGADSRT-----STGMYVANRASDKITQLTDNVYVCRSGSAADSQV 66
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSI 122
+S V L + V +I+ Y L I+GG D G +++ I
Sbjct: 67 VSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGI 126
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
G+ F G+G G + WK+N++++E L+V A+ I D SG V
Sbjct: 127 PLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVV 186
Query: 183 DVTIIRKNGQVSSYKP 198
II G ++ P
Sbjct: 187 RTVIINSEGVTRNFYP 202
>sp|D3S8M7|PSB_METSF Proteasome subunit beta OS=Methanocaldococcus sp. (strain FS406-22)
GN=psmB PE=3 SV=1
Length = 224
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 7/193 (3%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M GTT GL+ +D VIL D RA++ +++ D K+ ++ + I AGS D
Sbjct: 4 MKGTTTVGLICDDAVILATDKRASL-----GNLVADKEAKKLYKIDDYIAMTIAGSVGDA 58
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
+ + L+ A + + +IP + T++ L+ + + IIGG D G +L
Sbjct: 59 QAIVRLLTAEAKLYKMRTGRNIPPLACATLLSNILHSSRVFPFLTQIIIGGYDLLEGAKL 118
Query: 120 FSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
FS+ G + K F A G+G A G+LEAG+ +S +EG+ L ++A+K+ + D S
Sbjct: 119 FSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDREMSVEEGIKLAINALKSAMERDTFS 178
Query: 179 GSKVDVTIIRKNG 191
G+ + + +I K G
Sbjct: 179 GNGISLAVITKEG 191
>sp|Q58634|PSB_METJA Proteasome subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmB PE=1 SV=1
Length = 224
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 102/193 (52%), Gaps = 7/193 (3%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M GTT GL+ +D VIL D RA++ +++ D K+ ++ + I AGS D
Sbjct: 4 MKGTTTVGLICDDAVILATDKRASL-----GNLVADKEAKKLYKIDDYIAMTIAGSVGDA 58
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
+ + L+ A + + +IP + T++ L+ + + IIGG D G +L
Sbjct: 59 QAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKL 118
Query: 120 FSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
FS+ G + K F A G+G A G+LEAG+ ++S +EG+ L ++A+K+ + D S
Sbjct: 119 FSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFS 178
Query: 179 GSKVDVTIIRKNG 191
G+ + + +I K+G
Sbjct: 179 GNGISLAVITKDG 191
>sp|A1RWY6|PSB1_THEPD Proteasome subunit beta 1 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB1 PE=3 SV=1
Length = 200
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+ GTT GL+ +D V+L AD RAT + + KI + I AG+ D
Sbjct: 10 LKGTTTVGLVGKDFVVLAADRRAT-----AGYFIANKQTWKIVEIDSHIAATIAGTVGDA 64
Query: 61 KRLSGLVEANLECQFPKAHT--DIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQ 118
++L + +E ++ K T +PV T+ L++Y L +IGG+DS G
Sbjct: 65 QQL--VDRLRVEARYYKTITGDSMPVKSVATLASLILFQYRPILSVQMLIGGVDS-DGPS 121
Query: 119 LFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
LFS+ G+ K+ A G+G A+ +LE ++E+LS +E + L V A+ + D GS
Sbjct: 122 LFSVDWLGTVTREKYTATGSGSPYAVSLLEHEYREDLSLEEAVNLAVKAVNIALARDPGS 181
Query: 179 GSKVDVTIIRKNG 191
G VD+ I K G
Sbjct: 182 GEGVDIATITKEG 194
>sp|Q5JDJ9|PSB1_PYRKO Proteasome subunit beta 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmB1 PE=3 SV=1
Length = 203
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 101/192 (52%), Gaps = 8/192 (4%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+ GTT G++ +DGV+L AD RA++ ++++ +K+ ++ + + GAG+ D+
Sbjct: 5 LKGTTTVGIVCKDGVVLAADRRASL-----GNMVLSERVTKVFQIDDHLAIAGAGTVGDI 59
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
L L+ A + K ++ V T+ L+ G+ M F++GG DSA +L
Sbjct: 60 LSLVRLLRAEAKLYRAKVSREMSVKALATLTSNILHSGRGFAYMAWFLVGGYDSA--PRL 117
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
+SI G +F A G+G++ A +LE +++ + +EG+ L + AIKA D+ +G
Sbjct: 118 YSIDAAGGVTEDRFTAAGSGMEFAFSVLEENYRDGIPLEEGVKLALRAIKAATKRDVFTG 177
Query: 180 SKVDVTIIRKNG 191
V + I + G
Sbjct: 178 GGVTLVTITEEG 189
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 14/202 (6%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+ GTT GL+ ++GV+L ADTRA++ +I+ N +KI+++ E + GAG D+
Sbjct: 8 LKGTTTVGLVCKEGVVLAADTRASL-----GNIIYAKNVTKIHKIDEHLAIAGAGDVGDI 62
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLY--KYHGYLMCAFIIGGIDSAGGNQ 118
L L++A ++ V T++ L KY YL F++GG D +
Sbjct: 63 LNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGW-FLVGGYDEK--PR 119
Query: 119 LFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
LFS+ G + A G+G++ A IL++ ++E +S +G+ L V AI I D+ +
Sbjct: 120 LFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFT 179
Query: 179 GSKVDVTIIRKNGQVSSYKPYK 200
G + V I K+G YK Y+
Sbjct: 180 GDGLLVVTITKDG----YKEYR 197
>sp|P28072|PSB6_HUMAN Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4
Length = 239
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 9/214 (4%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI + ++ GV+LGAD+R T S + + K+ + ++I+CC +GSAAD +
Sbjct: 33 TGTTIMAVQFDGGVVLGADSRTTT-----GSYIANRVTDKLTPIHDRIFCCRSGSAADTQ 87
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ V L + + V ++ K+ Y+Y LM II G D G Q++S
Sbjct: 88 AVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYS 147
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ G F G+G G ++A ++E ++++E L +A+ + D SG
Sbjct: 148 VPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGV 207
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIP 215
+ + I ++G + +L D++PK +P
Sbjct: 208 IRLAAIAESG----VERQVLLGDQIPKFAVATLP 237
>sp|P28073|PSB6_RAT Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1
SV=3
Length = 238
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 9/214 (4%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI + ++ GV+LGAD+R T S + + K+ + + I+CC +GSAAD +
Sbjct: 32 TGTTIMAVQFDGGVVLGADSRTTT-----GSYIANRVTDKLTPIHDHIFCCRSGSAADTQ 86
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ V L + + V ++ K+ Y+Y LM II G D G Q++S
Sbjct: 87 AVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYS 146
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ G F G+G G ++A ++E +++ E L +A+ + D SG
Sbjct: 147 VPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGV 206
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIP 215
+ + I+++G + +L D++PK +P
Sbjct: 207 IRLAAIQQSG----VERQVLLGDQIPKVTISTLP 236
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
GTT G++ DGV+L AD RA++ +I+ N +KI+++ E + GAG D+
Sbjct: 10 GTTTVGIVCSDGVVLAADRRASL-----GNIVYAKNVTKIHKIDEHLAIAGAGDVGDILN 64
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQTL--YKYHGYLMCAFIIGGIDSAGGNQLF 120
L L+ A + + ++ + V T++ L + YL F++GG D +L+
Sbjct: 65 LVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFDEK--PRLY 121
Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
S+ G K+ A G+G++ A +L++ ++E+L +EG+ + V+AI + I D+ SG
Sbjct: 122 SVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGD 181
Query: 181 KVDVTIIRKNGQVSSYKPYKVLSDRMPKCV 210
+ V I + G Y+ LS+ K +
Sbjct: 182 GIMVVTITEEG-------YRELSNSRLKAI 204
>sp|Q3MHN0|PSB6_BOVIN Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1
Length = 239
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 9/214 (4%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI + ++ GV+LGAD+R T S + + K+ + ++I+CC +GSAAD +
Sbjct: 33 TGTTIMAVQFDGGVVLGADSRTTT-----GSYIANRVTDKLTPIHDRIFCCRSGSAADTQ 87
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ V L + + V ++ K+ Y+Y LM II G D G Q++S
Sbjct: 88 AVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYS 147
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ G F G+G G ++A ++E ++++E L +A+ + D SG
Sbjct: 148 VPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGV 207
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIP 215
+ + I + G + +L D++PK +P
Sbjct: 208 IRLAAIAEPG----VERQVLLGDQIPKFTIATLP 237
>sp|C5A7L1|PSB1_THEGJ Proteasome subunit beta 1 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB1 PE=3 SV=1
Length = 201
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 8/192 (4%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M GTT G++ DGV+L AD RAT+ +++ +K+ ++ + + GAG D+
Sbjct: 8 MKGTTTVGVVCRDGVVLAADRRATL-----GNMVTSKEVTKVFQIDDHLAIAGAGLVGDI 62
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLY-KYHGYLMCAFIIGGIDSAGGNQL 119
L L+ A + K ++ V T++ L+ H F+IGG D +L
Sbjct: 63 LSLVRLLRAEAKLYRAKVGREMSVKALATLVSNVLHGSRHLPYFAWFLIGGYDVK--PRL 120
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
+SI G +F A G+G++ A+ +LE + + + EG+ L V A+KA I D+ +G
Sbjct: 121 YSIDAAGGVTEERFIAAGSGMEFALALLEENFSDGMGLDEGIDLAVRAVKAAIRRDVYTG 180
Query: 180 SKVDVTIIRKNG 191
V V I K G
Sbjct: 181 EGVTVVAITKEG 192
>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3
Length = 238
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 9/214 (4%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI + + GV+LGAD+R T S + + K+ + + I+CC +GSAAD +
Sbjct: 32 TGTTIMAVQFNGGVVLGADSRTTT-----GSYIANRVTDKLTPIHDHIFCCRSGSAADTQ 86
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ V L + + V ++ K+ Y+Y LM II G D G Q++S
Sbjct: 87 AVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYS 146
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ G F G+G G ++A ++E +++ E L +A+ + D SG
Sbjct: 147 VPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGV 206
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIP 215
+ + I+++G + +L D++PK +P
Sbjct: 207 IRLAAIQESG----VERQVLLGDQIPKFTIATLP 236
>sp|P93395|PSB6_TOBAC Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1
Length = 234
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 5/194 (2%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
GTTI G+ Y GV+LGAD+R S + + KI +L++ +Y C +GSAAD +
Sbjct: 13 GTTIIGVTYNGGVVLGADSRT-----STGMYVANRASDKITQLTDNVYVCRSGSAADSQI 67
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSI 122
+S V L + V + + Y L IIGG D G +++ I
Sbjct: 68 VSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGI 127
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
G+ F G+G G + WKE ++++E L+V A+ I D SG V
Sbjct: 128 PPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGGVV 187
Query: 183 DVTIIRKNGQVSSY 196
I K+G +
Sbjct: 188 RTVTINKDGATRKF 201
>sp|C7P6N4|PSB_METFA Proteasome subunit beta OS=Methanocaldococcus fervens (strain DSM
4213 / JCM 157852 / AG86) GN=psmB PE=3 SV=1
Length = 224
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 9/194 (4%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M GTT GL+ +D VIL D RA+M +++ D K+ ++ + I AGS D
Sbjct: 4 MKGTTTVGLICDDAVILATDKRASM-----GNLVADKEAKKLYKIDDYIALTIAGSVGDA 58
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLY--KYHGYLMCAFIIGGIDSAGGNQ 118
+ + L+ A + + +I + T++ L+ +Y +L IIGG D G +
Sbjct: 59 QAIVRLLTAEAKLYKMRTGKNISPLACATLLSNILHSNRYFPFL-TQLIIGGYDLLEGAK 117
Query: 119 LFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
LFS+ G + K F A G+G A G+LEAG+ ++ +EG+ L + A+K+ + D
Sbjct: 118 LFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMPVEEGIKLALKALKSAMERDTY 177
Query: 178 SGSKVDVTIIRKNG 191
SG+ + + +I K G
Sbjct: 178 SGNGISLAVITKEG 191
>sp|Q6LZD4|PSB_METMP Proteasome subunit beta OS=Methanococcus maripaludis (strain S2 /
LL) GN=psmB PE=3 SV=1
Length = 219
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M GTT GLL DGV+L D RATM +++ D K+ ++ + I AGS D
Sbjct: 12 MKGTTTVGLLCNDGVVLATDKRATM-----GNLIADKEAKKLYKIDDYIAMTIAGSVGDA 66
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
+ L L+ A + + ++ + T+I L+ Y L+ I+GG D G +L
Sbjct: 67 QSLIRLISAEAKIYKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGAKL 126
Query: 120 FSIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
FS+ G + F A G+G A G+LE+ +K +++ ++GL + V A+ + + D S
Sbjct: 127 FSLDPVGGINEESSFTATGSGSPTAYGVLESEYKSDIAIEKGLLIAVKALSSAMQRDAYS 186
Query: 179 GSKVDVTIIRKNG 191
G+ + + I K+G
Sbjct: 187 GNGISLAHINKDG 199
>sp|A6VK02|PSB_METM7 Proteasome subunit beta OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=psmB PE=3 SV=1
Length = 219
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M GTT GLL +DGV+L D RATM +++ D K+ ++ + I AGS D
Sbjct: 12 MKGTTTVGLLCKDGVVLATDKRATM-----GNLIADKEAKKLYKIDDYIAMTIAGSVGDA 66
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
+ L L+ A + + ++ + T+I L+ Y L+ I+GG D G +L
Sbjct: 67 QSLIRLISAEAKIYKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGAKL 126
Query: 120 FSIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
FS+ G + F A G+G A G+LEA ++ +++ +GL + V A+ + + D S
Sbjct: 127 FSLDPVGGINEESSFTATGSGSPTAYGVLEAEYRSDVTIDKGLLVAVKALSSAMQRDAYS 186
Query: 179 GSKVDVTIIRKNG 191
G+ + + I K+G
Sbjct: 187 GNGISLAHINKDG 199
>sp|A9A788|PSB_METM6 Proteasome subunit beta OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=psmB PE=3 SV=1
Length = 219
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M GTT GLL +DGV+L D RATM +++ D K+ ++ + I AGS D
Sbjct: 12 MKGTTTVGLLCKDGVVLATDKRATM-----GNLIADKEAKKLYKIDDYIAMTIAGSVGDA 66
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
+ L L+ A + + ++ + T+I L+ Y L+ I+GG D G +L
Sbjct: 67 QSLIRLISAEAKIYKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGAKL 126
Query: 120 FSIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
FS+ G + F A G+G A G+LEA ++ +++ +GL + V A+ + + D S
Sbjct: 127 FSLDPVGGINEESSFTATGSGSPTAYGVLEAEYRSDVTIDKGLLVAVKALSSAMQRDAYS 186
Query: 179 GSKVDVTIIRKNG 191
G+ + + I K+G
Sbjct: 187 GNGISLAHINKDG 199
>sp|A4FYA5|PSB_METM5 Proteasome subunit beta OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=psmB PE=3 SV=1
Length = 219
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M GTT GLL +DGV+L D RATM +++ D K+ ++ + I AGS D
Sbjct: 12 MKGTTTVGLLCKDGVVLATDKRATM-----GNLIADKEAKKLYKIDDYIAMTIAGSVGDA 66
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
+ L ++ A + + ++ + T+I L+ Y L+ I+GG D G +L
Sbjct: 67 QSLIRIISAEAKIHKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGAKL 126
Query: 120 FSIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
FS+ G + F A G+G A G+LEA ++ +++ +GL + V A+ + + D S
Sbjct: 127 FSLDPVGGINEESSFTATGSGSPTAYGVLEAEYRSDVTIDKGLLVAVKALSSAMQRDAYS 186
Query: 179 GSKVDVTIIRKNG 191
G+ + + I K+G
Sbjct: 187 GNGISLAHINKDG 199
>sp|P38624|PSB1_YEAST Proteasome subunit beta type-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE3 PE=1 SV=2
Length = 215
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 12/192 (6%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
GT+I + ++DGVILGAD+R T + + + K+ R+ +KI+CC +GSAAD +
Sbjct: 19 GTSIMAVTFKDGVILGADSRTTT-----GAYIANRVTDKLTRVHDKIWCCRSGSAADTQA 73
Query: 63 LSGLVEANLE---CQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQL 119
++ +V+ +LE Q+ T+ ++ K+ Y+ L I+ G D ++
Sbjct: 74 IADIVQYHLELYTSQYGTPSTE----TAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 129
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
++I GS H + G+G G + ++EN+S++E + + ++ I +D SG
Sbjct: 130 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 189
Query: 180 SKVDVTIIRKNG 191
+ + ++ G
Sbjct: 190 GVIRMVVLTAAG 201
>sp|A6USJ3|PSB_METVS Proteasome subunit beta OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=psmB PE=3 SV=1
Length = 219
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 7/193 (3%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M GTT GL+ EDGV+L D RATM +++ D K+ ++ + I AGS D
Sbjct: 12 MKGTTTVGLICEDGVVLATDKRATM-----GNLIADKEAKKLYKIDDYIAMTIAGSVGDA 66
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
+ L L+ A + + ++ + T+ L+ Y L+ IIGG D G +L
Sbjct: 67 QSLIRLLSAEAKIYKMRTGNNMTPLSCTTLTSNVLHGNRHYPLLTQLIIGGYDLINGPKL 126
Query: 120 FSIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
FS+ G + F A G+G A G+LEA +K ++ ++GL + V A+ + + D S
Sbjct: 127 FSLDPVGGINEESSFTATGSGSPTAYGVLEAEYKSEINIEKGLLIAVKALISAMQRDAYS 186
Query: 179 GSKVDVTIIRKNG 191
G+ + + I K G
Sbjct: 187 GNGISLAKIDKTG 199
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 103/194 (53%), Gaps = 12/194 (6%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+ GTT G++++DG+IL + RATM S++ K+ +++++I AG D
Sbjct: 7 LKGTTTIGIVFKDGIILATEKRATM-----GSMIASKRAKKVYQVADRIGMTTAGGVGDA 61
Query: 61 KRLSGL--VEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGN 117
++L+ + VE NL Q + + I V T++ L + GY ++GG+D A G
Sbjct: 62 QQLARIMSVECNL-YQIRRGRS-ISVGASSTLLSNYLNQNRGYPYYVQLLVGGVD-ATGP 118
Query: 118 QLFSI-FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDL 176
++S+ G++ A G+G A G+LE +K++L+E E + L + A++A + D
Sbjct: 119 SVYSVDAMGGATRESDIVATGSGSPMAYGVLEDRYKKDLTEDEAIELAIRALRAAMRRDS 178
Query: 177 GSGSKVDVTIIRKN 190
SG + V II K+
Sbjct: 179 ASGEGIHVVIITKD 192
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 18/204 (8%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+ GTT+ G+ DGV+L A+ R S L+ + K+ R+ +K+ AG ADM
Sbjct: 4 LPGTTV-GIRVSDGVVLAAEKRV-----SYGLYLMSKSGKKVYRILDKMGMASAGLMADM 57
Query: 61 KRLSGLVEANLECQ------FPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSA 114
+ L+ +VEA + PK T + + + ++ L+ Y+ ++GG+D
Sbjct: 58 QTLARIVEAEMRLYELDSNISPKVWT-VAKLLSYILYERRLFPYY----AEIVVGGLDEE 112
Query: 115 GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILY 174
G+ L+S+ G+ + A+G+G Q A+ I+E+ +K+++S E L+L + ++ A +
Sbjct: 113 -GSHLYSLDPIGAIIEDDYVALGSGTQLAISIVESNYKKDMSLDEALSLALKSVYAAMKR 171
Query: 175 DLGSGSKVDVTIIRKNGQVSSYKP 198
D SG VDV +I K+G + P
Sbjct: 172 DAASGDGVDVLVIGKSGTLEKTYP 195
>sp|B6YSW2|PSB1_THEON Proteasome subunit beta 1 OS=Thermococcus onnurineus (strain NA1)
GN=psmB1 PE=3 SV=1
Length = 203
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 16/196 (8%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+ GTT G++ +DGV+L AD RA++ ++++ +K+ ++ + + GAGS D+
Sbjct: 5 LKGTTTVGIVCKDGVVLAADRRASL-----GNMVLSKEVTKVFQIDDHLALAGAGSVGDI 59
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLY-----KYHGYLMCAFIIGGIDSAG 115
L L+ A ++ K +I V T+ L+ Y G+ F+I G D
Sbjct: 60 LSLVRLLRAEVKLYRAKVGREISVKALATLTSNILHGSRFMPYFGW----FLIAGYDEK- 114
Query: 116 GNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYD 175
L+S+ G KF A G+G++ A +LE G+K++++ +EG+ L + AIK D
Sbjct: 115 -PALYSLDMAGGVTEDKFTAAGSGMELAFAVLEDGYKDDINVEEGVKLALKAIKIATRRD 173
Query: 176 LGSGSKVDVTIIRKNG 191
+ +G + + + + G
Sbjct: 174 VFTGDGITLVTVTEEG 189
>sp|B1L6X8|PSB2_KORCO Proteasome subunit beta 2 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB2 PE=3 SV=1
Length = 198
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 14/205 (6%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M T GL ++ GV+L AD R S + ++ + K+ ++E++ AG D
Sbjct: 1 MVLATALGLRFDGGVVLAADRRV-----SYNGFILSKSARKVFLINERVGVSTAGLPGDF 55
Query: 61 KRLSGLVEANL---ECQFPKAHTDIPVICPVTMIKQTLY--KYHGYLMCAFIIGGIDSAG 115
+ L +++ N+ E + KA T V ++++ LY ++ G ++GGID++G
Sbjct: 56 QELVDVLKYNITMYELENEKAATPTNVAKLLSIL---LYQGRFSGIYYAELVVGGIDNSG 112
Query: 116 GNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYD 175
++F + G F A+G+G Q A GILE +KE +SEKE + L A++ I D
Sbjct: 113 -PKIFVLDPAGGLMEENFSAVGSGAQIATGILERFFKEGMSEKEAVELAERAMREAISRD 171
Query: 176 LGSGSKVDVTIIRKNGQVSSYKPYK 200
SG +D+ II G + P +
Sbjct: 172 ALSGDGIDLLIITSKGSRMEFIPVR 196
>sp|A9A2U7|PSB2_NITMS Proteasome subunit beta 2 OS=Nitrosopumilus maritimus (strain SCM1)
GN=psmB2 PE=3 SV=1
Length = 210
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 14/211 (6%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+ GTT G+ +DGV+L AD RA S + ++N KI ++ + AG AD
Sbjct: 10 LHGTTTVGIKAKDGVVLCADMRA-----SAGYFIANNNTMKIQKIDDHAGLTLAGGVADA 64
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
+ + ++ + + H I + + ++ GY M ++GG D A G L
Sbjct: 65 QNIVDILRYHSNLHRVEKHGPISIHSLARLCSLIFHQNRGYPFMADILVGGYD-AEGPAL 123
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
F+I GS + G+G A G+LE ++E+L+ +E + + A+KA I+ ++G+G
Sbjct: 124 FNIDMFGSVEKKAYVTTGSGSPVAYGLLEEEYREDLTVEEAKKIALRAVKAAIVRNIGTG 183
Query: 180 SKVDVTIIRKNGQVSSYKPYKVLSDRMPKCV 210
+++ I+ K+G +++L++ K V
Sbjct: 184 DGINIAIMDKDG-------FRLLTEEQKKAV 207
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
M GTT GL+ +D VIL D RA+M +++ D K+ ++ + I AGS D
Sbjct: 4 MKGTTTVGLICDDAVILATDKRASM-----GNLIADKEAKKLYKIDDYIAMTIAGSVGDA 58
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
+ + + A + +I T++ L+ + + IIGG D G +L
Sbjct: 59 QAIVRALIAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQIIIGGYDLTDGPKL 118
Query: 120 FSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
FS+ G + K F + G+G A G+LEA + ++S +EGL L + A+K+ + D S
Sbjct: 119 FSLDPLGGMNEEKTFTSTGSGSPIAYGVLEAEYDRDMSIEEGLKLALKALKSAMERDTYS 178
Query: 179 GSKVDVTIIRKNGQVSSYKPYKVLSDR 205
G+ V V +I K G K+LSD
Sbjct: 179 GNGVSVAVITKEG-------VKLLSDE 198
>sp|Q9DD33|PSB9_SALSA Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1
Length = 217
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 6/190 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI + ++ GV+LG+D+R S +++ +K++ L +KIYC +GSAAD +
Sbjct: 17 TGTTIIAIEFDGGVVLGSDSRV-----SAGETVVNRVMNKLSLLHDKIYCALSGSAADAQ 71
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ +V L+ + D V T++K YKY L I+ G D GG Q++
Sbjct: 72 TIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVY- 130
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ +G F G+G G ++A +++ +S+++ +V+ + + D SG
Sbjct: 131 VTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGV 190
Query: 182 VDVTIIRKNG 191
+ I + G
Sbjct: 191 AYLVTIDEKG 200
>sp|Q9PT26|PSB9_ONCMY Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2
SV=1
Length = 217
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 6/190 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI + ++ GV+LG+D+R S +++ +K++ L +KIYC +GSAAD +
Sbjct: 17 TGTTIIAIEFDGGVVLGSDSRV-----SAGETVVNRVMNKLSLLHDKIYCALSGSAADAQ 71
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ +V L+ + D V T++K YKY L I+ G D GG Q++
Sbjct: 72 TIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVY- 130
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ +G F G+G G ++A +++ +S+++ +V+ + + D SG
Sbjct: 131 VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGV 190
Query: 182 VDVTIIRKNG 191
+ I + G
Sbjct: 191 AYLVTIDEKG 200
>sp|A4WH05|PSB1_PYRAR Proteasome subunit beta 1 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=psmB1 PE=3 SV=1
Length = 202
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 9/191 (4%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHN-CSKINRLSEKIYCCGAGSAADMKR 62
TT G++ +DGV+L D R T + I H K+ ++ + + +G AD++
Sbjct: 2 TTTVGIVVKDGVVLATDKRVT------AGYYIAHKKGEKLWKIDDHVAATMSGGVADLQN 55
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAF-IIGGIDSAGGNQLFS 121
+ + + IP+ V + L+ Y+ IIGG+D G ++
Sbjct: 56 ILSFLTVRAREYKTQFRRPIPIRALVNYMSLILFYSRPYVYVVHSIIGGVDEEEGAVMYM 115
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ G+ K+ A G+G A G+LE G++ +L+ +E + L ++AIKA I D GSG
Sbjct: 116 VDWLGTVTKEKYVATGSGSPYAKGVLEVGYRGDLTVEEAVDLAINAIKAAIRNDPGSGEG 175
Query: 182 VD-VTIIRKNG 191
+D VTI +++G
Sbjct: 176 IDVVTITKRDG 186
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 107/210 (50%), Gaps = 14/210 (6%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTT G++++ GVIL + RATM +++ K++ +++KI AG D +
Sbjct: 10 TGTTTVGIVFDGGVILATERRATM-----GNLIASKKAKKVHAITDKIGMTIAGGVGDAQ 64
Query: 62 RLSGLVEANLECQFPKAH--TDIPVICPVTMIKQTLY--KYHGYLMCAFIIGGIDSAGGN 117
+L ++ N+EC + I V T++ L ++ Y + ++GG+D++G +
Sbjct: 65 QLVRII--NVECNLYEIRRGQKISVGAAATILSNYLNQNRFSPYYV-QLLVGGVDTSGPS 121
Query: 118 QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
G++ F + G+G A G+LE +K N++E+E + L V A++A +L D
Sbjct: 122 VYSVDAAGGATLEENFVSTGSGSLTAYGVLEDRFKPNMTEEEAIELAVRALRAAMLRDSA 181
Query: 178 SGSKVDVTIIRKNGQVSSYKPYKVLSDRMP 207
SG +V II + + Y P ++ +P
Sbjct: 182 SGEGYNVVIITQ--EKFEYLPEDKIAGYLP 209
>sp|P28061|PSB_THEAC Proteasome subunit beta OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=psmB PE=1 SV=1
Length = 211
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 11/195 (5%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTT G+ +D VI+ + R TM++ ++ N K+ ++ AG D +
Sbjct: 7 TGTTTVGITLKDAVIMATERRVTMEN-----FIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTL--YKYHGYLMCAFIIGGIDSAGGNQL 119
L ++A LE + ++P+ T++ L KY Y M ++GGID+A +
Sbjct: 62 VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPY-MVQLLVGGIDTA--PHV 118
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
FSI G S + + G+G G+LE+ + E ++ EG+ L++ AI A D SG
Sbjct: 119 FSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASG 178
Query: 180 SKVDVTII-RKNGQV 193
+DV +I RK+G V
Sbjct: 179 GMIDVAVITRKDGYV 193
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 10/203 (4%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
+GTT GL+ D VIL AD RAT ++ KI LS + +G AD +
Sbjct: 24 SGTTTVGLIASDHVILAADKRAT-----AGFLIASRRVKKIVMLSNYVAMTVSGLVADAQ 78
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLY--KYHGYLMCAFIIGGIDSAGGNQL 119
LS ++ + V +++ L+ K+ Y+ I+GG D+ +L
Sbjct: 79 ILSDVLREEIRLYEMTNKVKPSVRFVASLLSNILFSSKFFPYI-VQLIVGGYDTQ--PRL 135
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
+++ GS K+ A G+G A G+LE ++E+LS +E + + AI++ +L D SG
Sbjct: 136 YTLDLFGSITEDKYTATGSGSPIAYGVLEERYREDLSVEEAIKVATTAIRSAVLRDAASG 195
Query: 180 SKVDVTIIRKNGQVSSYKPYKVL 202
DV +I G + PY L
Sbjct: 196 DGADVVVIGPQGYEEKFIPYNSL 218
>sp|Q55GJ6|PSB6_DICDI Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6
PE=1 SV=1
Length = 214
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 5/189 (2%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
GT+I + Y+ GVI+GAD+R T + + + +KI + E+IYCC +GSAAD +
Sbjct: 14 GTSIMAVEYDGGVIMGADSRTTT-----GAYIANRVTNKITPIHERIYCCRSGSAADTQA 68
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSI 122
+S V LE + + V ++ + Y LM I+ G D G +++I
Sbjct: 69 ISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNI 128
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
GS F G+G G ++ +K +++ E + + +++ + D SG +
Sbjct: 129 SLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGGVI 188
Query: 183 DVTIIRKNG 191
+ II KNG
Sbjct: 189 RLCIIDKNG 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,168,377
Number of Sequences: 539616
Number of extensions: 4151298
Number of successful extensions: 9967
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 9488
Number of HSP's gapped (non-prelim): 354
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)