Query psy15384
Match_columns 260
No_of_seqs 197 out of 1336
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 19:36:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0173|consensus 100.0 2.2E-60 4.9E-65 407.6 20.0 225 2-233 36-260 (271)
2 COG0638 PRE1 20S proteasome, a 100.0 1.4E-47 3.1E-52 337.3 22.8 196 2-203 29-227 (236)
3 cd03759 proteasome_beta_type_3 100.0 5.9E-47 1.3E-51 324.3 23.2 189 1-195 1-191 (195)
4 cd03761 proteasome_beta_type_5 100.0 8.5E-47 1.9E-51 321.6 24.1 186 4-196 1-187 (188)
5 cd03763 proteasome_beta_type_7 100.0 1.6E-46 3.4E-51 320.0 24.0 189 4-199 1-189 (189)
6 cd03760 proteasome_beta_type_4 100.0 1.5E-46 3.2E-51 322.2 24.0 191 2-198 1-197 (197)
7 cd03758 proteasome_beta_type_2 100.0 1.7E-46 3.6E-51 321.2 23.9 187 4-196 2-191 (193)
8 PTZ00488 Proteasome subunit be 100.0 1.1E-46 2.5E-51 333.5 21.8 192 1-199 37-229 (247)
9 cd03757 proteasome_beta_type_1 100.0 4.1E-46 8.9E-51 323.1 23.3 189 2-196 7-205 (212)
10 cd03762 proteasome_beta_type_6 100.0 1.6E-45 3.4E-50 313.4 24.5 186 4-195 1-186 (188)
11 TIGR03634 arc_protsome_B prote 100.0 5.5E-45 1.2E-49 309.1 23.2 183 3-191 1-184 (185)
12 cd03764 proteasome_beta_archea 100.0 1.4E-44 3E-49 307.5 23.8 186 4-196 1-187 (188)
13 cd03750 proteasome_alpha_type_ 100.0 6.5E-45 1.4E-49 318.6 21.6 193 2-202 26-223 (227)
14 TIGR03690 20S_bact_beta protea 100.0 1.1E-44 2.5E-49 315.6 22.9 194 2-201 1-207 (219)
15 cd03765 proteasome_beta_bacter 100.0 2.6E-44 5.6E-49 316.0 24.0 184 4-195 1-204 (236)
16 cd01912 proteasome_beta protea 100.0 1.6E-43 3.5E-48 300.6 24.0 186 4-195 1-187 (189)
17 PTZ00246 proteasome subunit al 100.0 1.9E-43 4E-48 314.1 20.7 185 2-191 30-219 (253)
18 TIGR03633 arc_protsome_A prote 100.0 2.1E-42 4.5E-47 302.1 22.9 189 2-198 28-222 (224)
19 cd03755 proteasome_alpha_type_ 100.0 1.6E-42 3.4E-47 299.5 20.9 177 2-187 26-207 (207)
20 KOG0176|consensus 100.0 6.2E-43 1.3E-47 290.8 17.4 193 2-202 33-235 (241)
21 cd03752 proteasome_alpha_type_ 100.0 2.5E-42 5.4E-47 299.5 21.4 181 2-187 28-213 (213)
22 cd03751 proteasome_alpha_type_ 100.0 2.3E-42 5E-47 299.8 20.8 179 2-187 29-212 (212)
23 PRK03996 proteasome subunit al 100.0 2.1E-42 4.5E-47 305.2 20.4 192 2-201 35-232 (241)
24 cd03749 proteasome_alpha_type_ 100.0 8.1E-42 1.7E-46 296.0 21.4 178 2-188 26-211 (211)
25 cd03753 proteasome_alpha_type_ 100.0 1.2E-41 2.5E-46 295.2 21.0 178 2-187 26-213 (213)
26 cd03756 proteasome_alpha_arche 100.0 2.1E-41 4.5E-46 293.3 21.7 179 2-188 27-210 (211)
27 cd01906 proteasome_protease_Hs 100.0 3.1E-41 6.6E-46 284.2 21.8 179 4-187 1-182 (182)
28 cd01911 proteasome_alpha prote 100.0 1.6E-41 3.5E-46 293.4 20.4 179 2-187 26-209 (209)
29 PF00227 Proteasome: Proteasom 100.0 3E-41 6.5E-46 286.1 21.4 181 2-187 3-190 (190)
30 cd03754 proteasome_alpha_type_ 100.0 6E-41 1.3E-45 291.4 20.7 179 2-187 28-215 (215)
31 TIGR03691 20S_bact_alpha prote 100.0 4.3E-40 9.4E-45 288.3 21.9 187 2-201 26-224 (228)
32 KOG0183|consensus 100.0 1.2E-41 2.6E-46 286.1 11.5 205 2-236 29-240 (249)
33 KOG0185|consensus 100.0 3.7E-40 8.1E-45 280.4 16.9 208 1-214 39-253 (256)
34 KOG0175|consensus 100.0 1.3E-39 2.9E-44 280.2 15.6 194 2-202 70-264 (285)
35 KOG0181|consensus 100.0 3.3E-40 7.3E-45 273.9 10.8 192 2-202 31-227 (233)
36 KOG0174|consensus 100.0 3E-38 6.5E-43 262.1 17.6 195 1-201 17-213 (224)
37 KOG0178|consensus 100.0 3.3E-36 7.2E-41 252.8 15.5 184 3-191 31-220 (249)
38 PRK05456 ATP-dependent proteas 100.0 4.7E-35 1E-39 245.9 20.2 166 3-186 1-171 (172)
39 cd01913 protease_HslV Protease 100.0 1E-34 2.2E-39 242.8 19.5 166 4-187 1-171 (171)
40 KOG0179|consensus 100.0 1.6E-34 3.4E-39 242.4 19.2 188 1-194 27-226 (235)
41 TIGR03692 ATP_dep_HslV ATP-dep 100.0 7.1E-34 1.5E-38 237.7 19.9 165 4-186 1-170 (171)
42 KOG0177|consensus 100.0 3.9E-34 8.4E-39 236.8 16.9 189 5-199 3-194 (200)
43 KOG0184|consensus 100.0 4.5E-33 9.7E-38 235.5 15.4 182 2-190 33-219 (254)
44 KOG0863|consensus 100.0 1.2E-32 2.5E-37 234.1 16.6 190 2-200 31-228 (264)
45 KOG0182|consensus 100.0 3E-32 6.4E-37 229.1 17.0 188 2-196 35-230 (246)
46 KOG0180|consensus 100.0 7.3E-31 1.6E-35 214.5 17.2 186 1-191 6-193 (204)
47 cd01901 Ntn_hydrolase The Ntn 100.0 5E-29 1.1E-33 203.1 19.4 160 4-169 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.6 7.5E-15 1.6E-19 119.6 12.9 170 1-188 2-176 (178)
49 COG3484 Predicted proteasome-t 99.4 8.1E-12 1.8E-16 105.5 12.4 190 4-201 2-211 (255)
50 PF12465 Pr_beta_C: Proteasome 97.8 1.5E-05 3.2E-10 50.4 1.8 35 202-237 1-35 (38)
51 PF09894 DUF2121: Uncharacteri 96.5 0.17 3.6E-06 43.2 14.4 50 141-190 131-180 (194)
52 COG4079 Uncharacterized protei 93.4 5.4 0.00012 35.5 15.7 152 4-191 2-182 (293)
53 KOG3361|consensus 92.3 0.38 8.3E-06 38.6 5.6 43 120-162 71-113 (157)
54 KOG2599|consensus 49.7 2.1E+02 0.0045 26.2 10.8 66 103-174 196-263 (308)
55 COG1754 Uncharacterized C-term 49.4 12 0.00026 34.0 2.1 73 108-185 77-152 (298)
56 PF08269 Cache_2: Cache domain 49.2 16 0.00035 26.8 2.6 40 154-199 34-73 (95)
57 PRK09732 hypothetical protein; 42.3 66 0.0014 25.9 5.2 36 153-192 5-40 (134)
58 PF03928 DUF336: Domain of unk 38.4 44 0.00095 26.3 3.6 35 154-192 2-36 (132)
59 COG4245 TerY Uncharacterized p 35.2 67 0.0014 27.7 4.3 42 159-200 22-63 (207)
60 COG3193 GlcG Uncharacterized p 34.4 1E+02 0.0022 25.1 5.1 36 153-192 6-41 (141)
61 PF08529 NusA_N: NusA N-termin 30.6 1.3E+02 0.0028 23.5 5.1 52 153-204 13-64 (122)
62 PF07499 RuvA_C: RuvA, C-termi 30.1 34 0.00074 22.1 1.5 31 136-166 13-44 (47)
63 PF01592 NifU_N: NifU-like N t 27.9 1.3E+02 0.0028 23.5 4.7 54 120-173 42-96 (126)
64 COG0822 IscU NifU homolog invo 27.7 1.6E+02 0.0034 24.1 5.3 48 118-166 44-92 (150)
65 PF11211 DUF2997: Protein of u 26.5 95 0.0021 20.4 3.1 32 120-151 3-34 (48)
66 PRK11325 scaffold protein; Pro 25.4 1.6E+02 0.0035 23.1 4.9 50 121-170 46-95 (127)
67 PF02205 WH2: WH2 motif; Inte 24.9 29 0.00062 20.6 0.3 13 247-259 1-13 (30)
68 PF12481 DUF3700: Aluminium in 24.7 4.9E+02 0.011 23.0 12.2 47 6-63 45-91 (228)
69 PF04485 NblA: Phycobilisome d 21.5 1.3E+02 0.0028 20.3 3.0 23 153-175 20-42 (53)
70 PF00538 Linker_histone: linke 21.3 1.3E+02 0.0028 21.3 3.3 39 137-175 21-59 (77)
71 PF14398 ATPgrasp_YheCD: YheC/ 20.9 2.6E+02 0.0056 24.8 5.8 43 83-125 189-232 (262)
72 cd04513 Glycosylasparaginase G 20.4 3.5E+02 0.0075 24.4 6.5 56 133-191 187-246 (263)
73 COG4537 ComGC Competence prote 20.4 1.4E+02 0.003 23.0 3.3 28 60-87 49-77 (107)
74 cd01910 Wali7 This domain is p 20.1 6E+02 0.013 22.3 9.6 50 6-67 41-91 (224)
No 1
>KOG0173|consensus
Probab=100.00 E-value=2.2e-60 Score=407.58 Aligned_cols=225 Identities=42% Similarity=0.732 Sum_probs=221.0
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
|||||+||.||||||++||+|+|. |+++.+++|+|||.|.++|+||++|.+||.+.+++++..++++|++++++.
T Consensus 36 TGTtIvgv~~k~gvIlgADtRaT~-----G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~ 110 (271)
T KOG0173|consen 36 TGTTIVGVIFKDGVILGADTRATE-----GPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRK 110 (271)
T ss_pred cCcEEEEEEeCCeEEEeecccccC-----CCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence 799999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384 82 IPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL 161 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai 161 (260)
++|..+.++|+|+||+|+|+++++||+||+|.+| ||||++.|+|+....+|+++|||++.|+++||.+|+|+|++|||+
T Consensus 111 ~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~ 189 (271)
T KOG0173|consen 111 PRVVTALRMLKQHLFRYQGHIGAALILGGVDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAI 189 (271)
T ss_pred CceeeHHHHHHHHHHHhcCcccceeEEccccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHHH
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeeccccc
Q psy15384 162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKP 233 (260)
Q Consensus 162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~ 233 (260)
+|+.+|+.+++++|++||+||++|||++.+ ++++++|..++.+..|+.+|.|++|+|.++++.|.++..+.
T Consensus 190 ~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~-~~~lr~~~~~~~~~~r~~~y~~~~gtT~VL~~~v~~l~~~~ 260 (271)
T KOG0173|consen 190 KLVCEAIAAGIFNDLGSGSNVDLCVITKKG-VEYLRNYSRPNEKGERTGRYKFKPGTTAVLKEKVYPLLVEV 260 (271)
T ss_pred HHHHHHHHhhhccccCCCCceeEEEEeCCC-ccccccCCCCCCCccccceeeeCCCceEEEeeeeeeeeeee
Confidence 999999999999999999999999999777 99999999999999999999999999999999999996654
No 2
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-47 Score=337.32 Aligned_cols=196 Identities=31% Similarity=0.420 Sum_probs=186.9
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.++ |.++..++++|||+|+|||+|++||+.||++.++++++.+++.|++.++++
T Consensus 29 ~gtT~vgik~~dgVVlaadkr~t~-----~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~ 103 (236)
T COG0638 29 GGTTTVGIKGKDGVVLAADKRATS-----GLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEP 103 (236)
T ss_pred CCceEEEEEecCEEEEEEeccCCC-----CceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 479999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHH
Q psy15384 82 IPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEK 158 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~e 158 (260)
++++.++++|++++++++ +||++++||||+|+ ++|+||++||+|++.+++++|+|+|+..|+++||++|+++|++|
T Consensus 104 i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~e 182 (236)
T COG0638 104 ISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLE 182 (236)
T ss_pred CCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHH
Confidence 999999999999999986 59999999999998 66999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccC
Q psy15384 159 EGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLS 203 (260)
Q Consensus 159 eai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~ 203 (260)
||++++++||+++++||..++++++|++|+++.+++.+.++++..
T Consensus 183 eai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~ 227 (236)
T COG0638 183 EAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKK 227 (236)
T ss_pred HHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHH
Confidence 999999999999999999889999999999943399887776653
No 3
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-47 Score=324.34 Aligned_cols=189 Identities=20% Similarity=0.302 Sum_probs=179.4
Q ss_pred CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT 80 (260)
Q Consensus 1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (260)
.+|+|+|||+++||||||+|+|.+. +.++.+++++||++|++|++|++||..+|++.++++++.+++.|+++++.
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~ 75 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGV-----QQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREER 75 (195)
T ss_pred CCCceEEEEEcCCEEEEEEcccccc-----CCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3799999999999999999999998 67777888999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhc-cCcceeeEEEEEEeCCCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCCCCHH
Q psy15384 81 DIPVICPVTMIKQTLYKY-HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEK 158 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~-~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~ms~e 158 (260)
+++++.++++|++++|++ .+||++++||||||++++|+||++||+|++..++ ++|+|+|+..++++||+.|+++||++
T Consensus 76 ~~~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ 155 (195)
T cd03759 76 EIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPD 155 (195)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHH
Confidence 999999999999998865 4699999999999987779999999999999888 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384 159 EGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS 195 (260)
Q Consensus 159 eai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~ 195 (260)
||++++++||+.+.+||..++++++|++|+++| ++.
T Consensus 156 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~ 191 (195)
T cd03759 156 ELFETISQALLSAVDRDALSGWGAVVYIITKDK-VTT 191 (195)
T ss_pred HHHHHHHHHHHHHHhhCcccCCceEEEEEcCCc-EEE
Confidence 999999999999999999999999999999998 653
No 4
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.5e-47 Score=321.60 Aligned_cols=186 Identities=25% Similarity=0.389 Sum_probs=179.7
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |.++.+++++|||+|++|++|++||+.+|++.++++++.+++.|+++++++++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~ 75 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATA-----GSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERIS 75 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccC-----CcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 6999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT 162 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~ 162 (260)
++.++++|++++|+++. ||++++||||||++| |+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||++
T Consensus 76 ~~~la~~ls~~l~~~~~~~~~v~~li~G~D~~g-~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~ 154 (188)
T cd03761 76 VAAASKLLSNMLYQYKGMGLSMGTMICGWDKTG-PGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYD 154 (188)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCCC-CEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence 99999999999999865 899999999999765 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384 163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY 196 (260)
Q Consensus 163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l 196 (260)
++.+||+.+++||..++++++|++|+++| ++.+
T Consensus 155 l~~~~l~~~~~rd~~sg~~~~v~ii~~~g-~~~~ 187 (188)
T cd03761 155 LARRAIYHATHRDAYSGGNVNLYHVREDG-WRKI 187 (188)
T ss_pred HHHHHHHHHHHhcccCCCCeEEEEEcCCc-eEEc
Confidence 99999999999999999999999999999 7654
No 5
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-46 Score=320.03 Aligned_cols=189 Identities=44% Similarity=0.807 Sum_probs=184.3
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+|+||||||+|+|.++ |.++..++++|||+|++|++|+++|..+|++.+.+.++.+++.|+++++++++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 75 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATE-----GPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPR 75 (189)
T ss_pred CeEEEEEECCeEEEEEcCCccc-----CceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL 163 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l 163 (260)
++.++++|++++|.|+.||++++||||||++| |+||++||+|++.+++++|+|+|+..++++||++|+++||++||+++
T Consensus 76 ~~~~a~~l~~~l~~~~~p~~v~~ivaG~d~~g-~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l 154 (189)
T cd03763 76 VVTALTMLKQHLFRYQGHIGAALVLGGVDYTG-PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKL 154 (189)
T ss_pred HHHHHHHHHHHHHHcCCccceeEEEEeEcCCC-CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 99999999999999988999999999999776 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCc
Q psy15384 164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPY 199 (260)
Q Consensus 164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~ 199 (260)
+++||+.+.+||..++++++|++|+++| ++..+||
T Consensus 155 ~~~~l~~~~~rd~~~~~~~~v~ii~~~g-~~~~~~~ 189 (189)
T cd03763 155 VCEAIEAGIFNDLGSGSNVDLCVITKDG-VEYLRNY 189 (189)
T ss_pred HHHHHHHHHHhcCcCCCceEEEEEcCCc-EEEecCC
Confidence 9999999999999999999999999999 9999886
No 6
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-46 Score=322.23 Aligned_cols=191 Identities=24% Similarity=0.365 Sum_probs=180.6
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHh-hcCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLE-CQFPKAHT 80 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~ 80 (260)
||+|+|||+++||||||+|+|.+. |.++..++++|||+|++|++|+++|..+|++.++++++.+++ .|++.++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~-----~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 75 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSY-----GSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGH 75 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccc-----cceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 799999999999999999999998 899999999999999999999999999999999999999987 56678899
Q ss_pred CCChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--CC
Q psy15384 81 DIPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--NL 155 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~m 155 (260)
+++++.++++|++++|.++ +||++++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|++ +|
T Consensus 76 ~~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~m 155 (197)
T cd03760 76 SLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDL 155 (197)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCC
Confidence 9999999999999988654 599999999999975669999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccC
Q psy15384 156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKP 198 (260)
Q Consensus 156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~ 198 (260)
|+|||++++.+||+.+.+||..++++++|++|+++| ++...|
T Consensus 156 s~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~~~~ 197 (197)
T cd03760 156 TEEEARALIEECMKVLYYRDARSINKYQIAVVTKEG-VEIEGP 197 (197)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCC-EEeCCC
Confidence 999999999999999999999999999999999999 876543
No 7
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-46 Score=321.16 Aligned_cols=187 Identities=22% Similarity=0.297 Sum_probs=178.7
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
+|+|||+++||||||+|+|.++ |.++.+++++||++|++|++||+||+.||++.+.++++.+++.|+++++++++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 76 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAAR-----SILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELS 76 (193)
T ss_pred ceEEEEEeCCEEEEEEcCcccc-----CcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhc---cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384 84 VICPVTMIKQTLYKY---HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG 160 (260)
Q Consensus 84 v~~l~~~l~~~l~~~---~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea 160 (260)
++.++++|+++++.| ++||++++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||
T Consensus 77 ~~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea 156 (193)
T cd03758 77 PKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEA 156 (193)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHH
Confidence 999999999988643 35999999999999766699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384 161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY 196 (260)
Q Consensus 161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l 196 (260)
++++.+||+.+.+||..++++++|++|+++| ++.+
T Consensus 157 i~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g-~~~~ 191 (193)
T cd03758 157 LELMKKCIKELKKRFIINLPNFTVKVVDKDG-IRDL 191 (193)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEEcCCC-eEeC
Confidence 9999999999999999999999999999999 7654
No 8
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.1e-46 Score=333.48 Aligned_cols=192 Identities=23% Similarity=0.335 Sum_probs=183.3
Q ss_pred CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT 80 (260)
Q Consensus 1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (260)
++|+|+|||+++||||||+|+|.+. |.++..++++||++|++|++|++||+.+|++.++++++.+++.|++++++
T Consensus 37 ~~G~T~IgIk~kdgVvlAaD~r~~~-----g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~ 111 (247)
T PTZ00488 37 AHGTTTLAFKYGGGIIIAVDSKATA-----GPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGE 111 (247)
T ss_pred CCCceEEEEEeCCEEEEEEecCccc-----CCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4799999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHH
Q psy15384 81 DIPVICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKE 159 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~ee 159 (260)
+++++.++++|+++++++|. |+.+++||||||++| |+||++||+|++.+++++|+|+|+.+++++||+.|+++||++|
T Consensus 112 ~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~g-p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eE 190 (247)
T PTZ00488 112 LISVAAASKILANIVWNYKGMGLSMGTMICGWDKKG-PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEE 190 (247)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCC-CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHH
Confidence 99999999999999999864 566778999999776 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCc
Q psy15384 160 GLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPY 199 (260)
Q Consensus 160 ai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~ 199 (260)
|++++++||+.+.+||..++++++|++|+++| ++.+++.
T Consensus 191 ai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g-~~~l~~~ 229 (247)
T PTZ00488 191 AQDLGRRAIYHATFRDAYSGGAINLYHMQKDG-WKKISAD 229 (247)
T ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEEcCCc-cEECCHH
Confidence 99999999999999999999999999999999 9988443
No 9
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.1e-46 Score=323.13 Aligned_cols=189 Identities=21% Similarity=0.297 Sum_probs=180.8
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.++ |.++..++++||++|++|++||+||..||++.+++.++.+++.|+++++++
T Consensus 7 ~G~Tvigik~~dgVvlaaD~r~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~ 81 (212)
T cd03757 7 NGGTVLAIAGNDFAVIAGDTRLSE-----GYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKE 81 (212)
T ss_pred CCccEEEEEcCCEEEEEECCcccc-----CCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCC
Confidence 699999999999999999999999 888888999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC--------
Q psy15384 82 IPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK-------- 152 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~-------- 152 (260)
++++.++++|++++|+++ +||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+
T Consensus 82 i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 161 (212)
T cd03757 82 MSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVE 161 (212)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCC
Confidence 999999999999998765 49999999999998777999999999999999999999999999999999985
Q ss_pred -CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384 153 -ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY 196 (260)
Q Consensus 153 -~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l 196 (260)
++||++||++++.+||+.+++||..++++++|++|+++| ++..
T Consensus 162 ~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g-~~~~ 205 (212)
T cd03757 162 RTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG-IEEE 205 (212)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC-EEEE
Confidence 899999999999999999999999999999999999999 6543
No 10
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-45 Score=313.40 Aligned_cols=186 Identities=29% Similarity=0.492 Sum_probs=180.0
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |.++..++++||++|++|++|++||..+|++.+.++++.+++.|++.++++++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 75 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTST-----GSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPL 75 (188)
T ss_pred CeEEEEEECCeEEEEEcccccC-----CceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCC
Confidence 6999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL 163 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l 163 (260)
++.++++|+++++++++||++++||||+|++++|+||++||+|++.+++++++|+|+.+++++||+.|+++||++||+++
T Consensus 76 ~~~~a~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l 155 (188)
T cd03762 76 VKTAASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKF 155 (188)
T ss_pred HHHHHHHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999754599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384 164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS 195 (260)
Q Consensus 164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~ 195 (260)
+++||+.+.+||..++++++|++|+++| ++.
T Consensus 156 ~~~al~~~~~rd~~~~~~~~i~~i~~~g-~~~ 186 (188)
T cd03762 156 VKNALSLAMSRDGSSGGVIRLVIITKDG-VER 186 (188)
T ss_pred HHHHHHHHHHhccccCCCEEEEEECCCC-EEE
Confidence 9999999999999999999999999999 653
No 11
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=5.5e-45 Score=309.13 Aligned_cols=183 Identities=31% Similarity=0.488 Sum_probs=178.0
Q ss_pred cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI 82 (260)
Q Consensus 3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (260)
|+|+|||+++||||||+|+|.+. |+++..++++|||+|++|++|+++|..+|++.+.++++.+++.|++.++.++
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~-----~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 75 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASM-----GNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPM 75 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccC-----CCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384 83 PVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL 161 (260)
Q Consensus 83 ~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai 161 (260)
+++.++++|++++++++ +||++++||||+|++| |+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||+
T Consensus 76 ~~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d~~g-~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 154 (185)
T TIGR03634 76 SVKALATLLSNILNSNRFFPFIVQLLVGGVDEEG-PHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAK 154 (185)
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCCC-CEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHH
Confidence 99999999999998874 5999999999999876 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384 162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191 (260)
Q Consensus 162 ~la~~al~~~~~~D~~sg~~iev~vit~~g 191 (260)
+++++||+.+.+||..++++++|++|+++|
T Consensus 155 ~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 155 KLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 999999999999999999999999999987
No 12
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-44 Score=307.52 Aligned_cols=186 Identities=31% Similarity=0.474 Sum_probs=179.9
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |.++..++++||++|++|++++++|+.+|++.+.++++.+++.|++.++++++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~-----g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 75 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASM-----GNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMS 75 (188)
T ss_pred CcEEEEEeCCEEEEEEcccccc-----CCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 6999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT 162 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~ 162 (260)
++.+++++++++|+++ +||++++||||+|+ ++|+||++||+|++.+++++|+|+|+.+++++||+.|+++|+++||++
T Consensus 76 ~~~l~~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~ 154 (188)
T cd03764 76 IKALATLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKK 154 (188)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 9999999999999875 59999999999997 459999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384 163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY 196 (260)
Q Consensus 163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l 196 (260)
++++||+.+.+||..++++++|++++++| ++.+
T Consensus 155 l~~~~l~~~~~rd~~~~~~i~i~iv~~~g-~~~~ 187 (188)
T cd03764 155 LAIRAIKSAIERDSASGDGIDVVVITKDG-YKEL 187 (188)
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEECCCC-eEeC
Confidence 99999999999999999999999999999 8876
No 13
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.5e-45 Score=318.60 Aligned_cols=193 Identities=18% Similarity=0.295 Sum_probs=180.8
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.+. +++..++++||++|++|++||+||..+|++.+++.++.+++.|++.++++
T Consensus 26 ~G~t~igik~~dgVvlaad~~~~~------~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 99 (227)
T cd03750 26 SGAPSVGIKAANGVVLATEKKVPS------PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEP 99 (227)
T ss_pred cCCCEEEEEeCCEEEEEEeecCCc------cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999985 78888899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.++++|++++++| .+||++++||||||++| |+||++||+|++.+++++|+|+|+..++++||++|+++||
T Consensus 100 ~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g-~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms 178 (227)
T cd03750 100 IPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGG-PYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLE 178 (227)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCC-CEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCC
Confidence 99999999999988654 35999999999999775 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL 202 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~ 202 (260)
++||++++++||+.++++|+ ++++++|++|+++++++.+.|+++.
T Consensus 179 ~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~ei~ 223 (227)
T cd03750 179 LEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPAEIK 223 (227)
T ss_pred HHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHHHHH
Confidence 99999999999999999886 7999999999986449988776653
No 14
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.1e-44 Score=315.61 Aligned_cols=194 Identities=23% Similarity=0.286 Sum_probs=180.1
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.++ |+++.+++++|||+|++|++|++||..+|++.+.++++.+++.|+++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~-----g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~ 75 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQ-----GNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVP 75 (219)
T ss_pred CCcEEEEEEECCEEEEEECCcccc-----CcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 599999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc----cCcceeeEEEEEEeCC-CCceEEEEeecc-eEEeeCEEEEcCChHHHHHHHHhccCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY----HGYLMCAFIIGGIDSA-GGNQLFSIFQHG-SSHGHKFCAMGTGLQPAMGILEAGWKENL 155 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~----~~p~g~sliiaG~D~~-g~p~Ly~idp~G-s~~~~~~~aiGsgs~~a~~~Le~~y~~~m 155 (260)
++++.++++|+++++++ .+||++++||||||++ ++|+||++||+| ++..++++|+|+|+.+|+++||++|+++|
T Consensus 76 i~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~m 155 (219)
T TIGR03690 76 LTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDL 155 (219)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCc
Confidence 99999999999988754 4699999999999964 569999999999 57788999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCc-------EEEEEEEcCCcEEEccCccc
Q psy15384 156 SEKEGLTLMVDAIKAGILYDLGSGSK-------VDVTIIRKNGQVSSYKPYKV 201 (260)
Q Consensus 156 s~eeai~la~~al~~~~~~D~~sg~~-------iev~vit~~g~~~~l~~~~~ 201 (260)
|++||++++++||..+.++|..+++. ++|++|+++| ++.+.+.++
T Consensus 156 s~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g-~~~l~~~ei 207 (219)
T TIGR03690 156 DEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG-ARRVPESEL 207 (219)
T ss_pred CHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc-eEEcCHHHH
Confidence 99999999999999999999866664 3999999888 998844443
No 15
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-44 Score=315.96 Aligned_cols=184 Identities=17% Similarity=0.237 Sum_probs=169.2
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEec----CeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLS----EKIYCCGAGSAADMKRLSGLVEANLECQFPKAH 79 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~ 79 (260)
|-+|||+++||||||+|+|.+. .++..++++|||+|+ +||+||+||++||++.+++++|.+++.|+++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~------~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g 74 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNA------GVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNL 74 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccC------CCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhC
Confidence 4689999999999999999987 455555899999998 899999999999999999999999999999999
Q ss_pred C-CCChHhHHHHHHHHHHh----cc-------CcceeeEEEEEEeCCCCceEEEEeecceEEee----CEEEEcCChHHH
Q psy15384 80 T-DIPVICPVTMIKQTLYK----YH-------GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH----KFCAMGTGLQPA 143 (260)
Q Consensus 80 ~-~i~v~~l~~~l~~~l~~----~~-------~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~----~~~aiGsgs~~a 143 (260)
+ +++++.+++++++++++ ++ +||+|++||||||++++|+||++||+|++.++ +|+|+|+ +.++
T Consensus 75 ~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a 153 (236)
T cd03765 75 LNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYG 153 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhh
Confidence 9 89999999998887544 33 59999999999996555999999999999999 6799996 6999
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384 144 MGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS 195 (260)
Q Consensus 144 ~~~Le~~y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~ 195 (260)
+++||++|+++||+|||++++++||.+++.||..++++|+|++|+++| ++.
T Consensus 154 ~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G-~~~ 204 (236)
T cd03765 154 KPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDS-LQV 204 (236)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCC-eee
Confidence 999999999999999999999999999999999999999999999999 665
No 16
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-43 Score=300.56 Aligned_cols=186 Identities=37% Similarity=0.580 Sum_probs=179.4
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.+. |.++..++.+|||+|++++++++||+.+|++.+.++++.+++.|++.++++++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~-----~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 75 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASA-----GSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELS 75 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCccc-----CcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6899999999999999999999 88877999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT 162 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~ 162 (260)
++.+++++++++|++++ ||++++||||+|++++|+||++||+|++.+++++|+|+++.+++++||+.|+++||++||++
T Consensus 76 ~~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~ 155 (189)
T cd01912 76 VKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVE 155 (189)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999999999876 99999999999986669999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384 163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS 195 (260)
Q Consensus 163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~ 195 (260)
++.+||+.+.++|..++++++|++|+++| ++.
T Consensus 156 ~~~~~l~~~~~~d~~~~~~~~v~vi~~~g-~~~ 187 (189)
T cd01912 156 LVKKAIDSAIERDLSSGGGVDVAVITKDG-VEE 187 (189)
T ss_pred HHHHHHHHHHHhcCccCCcEEEEEECCCC-EEE
Confidence 99999999999999999999999999998 654
No 17
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.9e-43 Score=314.12 Aligned_cols=185 Identities=26% Similarity=0.339 Sum_probs=174.1
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.++ +.++..++++||++|++||+||++|+.+|++.+++.++.+++.|++.++++
T Consensus 30 ~g~t~Igik~~dgVvlaad~r~s~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 104 (253)
T PTZ00246 30 NASLTVGILCKEGVILGADKPISS-----KLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEP 104 (253)
T ss_pred hCCCEEEEEECCEEEEEEecCCCC-----cCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999999 777777789999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
+++..+++.++..++.| .+||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||++|+++|+
T Consensus 105 ~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms 184 (253)
T PTZ00246 105 QPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLT 184 (253)
T ss_pred CCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCC
Confidence 99999999998875543 3599999999999975569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g 191 (260)
++||++++++||+.++.+|..++++++|++|++++
T Consensus 185 ~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 185 LEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 99999999999999999999899999999999875
No 18
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.1e-42 Score=302.07 Aligned_cols=189 Identities=25% Similarity=0.316 Sum_probs=175.8
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.+. .++..++++||++|++|++|++||..+|++.+.+.++.++..|+++++++
T Consensus 28 ~G~tvigi~~~dgvvlaad~r~~~------~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 101 (224)
T TIGR03633 28 RGTTAVGIKTKDGVVLAVDKRITS------KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEP 101 (224)
T ss_pred cCCCEEEEEECCEEEEEEeccCCc------cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999975 67778899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.++++|+++++.| .+||++++||||+|.. +|+||++||.|++.+++++|+|+|+.+++++||+.|+++|+
T Consensus 102 ~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~-~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~ 180 (224)
T TIGR03633 102 IDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLS 180 (224)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCC-cCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCC
Confidence 99999999999987654 3599999999999965 49999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc-EEEccC
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ-VSSYKP 198 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~-~~~l~~ 198 (260)
++||++++++||+.+.. |..++++++|++|+++|+ ++.+.+
T Consensus 181 ~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~ 222 (224)
T TIGR03633 181 LDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSV 222 (224)
T ss_pred HHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCC
Confidence 99999999999999887 888899999999999873 555533
No 19
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-42 Score=299.50 Aligned_cols=177 Identities=19% Similarity=0.283 Sum_probs=167.1
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.+. .++..++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++
T Consensus 26 ~G~t~Igik~~dgVvlaad~~~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 99 (207)
T cd03755 26 KGTTAVGVRGKDCVVLGVEKKSVA------KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDP 99 (207)
T ss_pred cCCCEEEEEeCCEEEEEEecCCCC------cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999876 67777889999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.++++|++++++| .+||++++||+|||++++|+||++||+|++.+++++|+|+|+..++++||++|+++||
T Consensus 100 i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms 179 (207)
T cd03755 100 VTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMT 179 (207)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCC
Confidence 99999999999988655 3599999999999987669999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
++||++++++||..+.. .+++++||+++
T Consensus 180 ~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 180 RDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 99999999999999986 47899999985
No 20
>KOG0176|consensus
Probab=100.00 E-value=6.2e-43 Score=290.80 Aligned_cols=193 Identities=22% Similarity=0.350 Sum_probs=182.2
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
-|+|.|||+.++|||||+++|.++ +++.+++++||++|++||+|++||+.||++.+++++|.++++|++.|+++
T Consensus 33 LGsTaIGv~TkEgVvL~vEKritS------pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~ 106 (241)
T KOG0176|consen 33 LGSTAIGVKTKEGVVLAVEKRITS------PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEP 106 (241)
T ss_pred cCCceeeeeccceEEEEEeccccC------cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCc
Confidence 389999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc----------CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhcc
Q psy15384 82 IPVICPVTMIKQTLYKYH----------GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW 151 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~----------~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y 151 (260)
++|+.+.+.++++-.+++ +|||+++|+||+|++| |+||+.||+|+++.+++-|||+|+.-|.+.|++.|
T Consensus 107 i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~g-pqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~ 185 (241)
T KOG0176|consen 107 ISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETG-PQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEY 185 (241)
T ss_pred ccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCC-ceEEEeCCCCceEEecceeccccchHHHHHHHHHH
Confidence 999999999999876653 5999999999999877 99999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384 152 KENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL 202 (260)
Q Consensus 152 ~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~ 202 (260)
+++|+++||+.+++..|+..++..+. ..|++|.++++.+.++++.|.+++
T Consensus 186 ~~~ltL~ea~~~~L~iLkqVMeeKl~-~~Nvev~~vt~e~~f~~~t~EE~~ 235 (241)
T KOG0176|consen 186 HKDLTLKEAEKIVLKILKQVMEEKLN-SNNVEVAVVTPEGEFHIYTPEEVE 235 (241)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHhcC-ccceEEEEEcccCceEecCHHHHH
Confidence 99999999999999999999987764 689999999998769999777653
No 21
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-42 Score=299.49 Aligned_cols=181 Identities=23% Similarity=0.309 Sum_probs=170.2
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.+. +.++.+++++||++|++||+|++||+.+|++.+.++++.+++.|+++++++
T Consensus 28 ~G~t~igi~~~dgVvla~d~r~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 102 (213)
T cd03752 28 HAGTCLGILAKDGIVLAAEKKVTS-----KLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEP 102 (213)
T ss_pred cCCCEEEEEeCCEEEEEEEeccCC-----cccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999998 677777799999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.+++.|+.+++.| .+||++++||+|||++.+|+||.+||+|++.+++++|+|+|+.+++++||++|+++||
T Consensus 103 i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms 182 (213)
T cd03752 103 IPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMT 182 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCC
Confidence 99999999998765433 3599999999999965559999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
++||++++++||+.+.+||..++.+++|+++
T Consensus 183 ~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 183 LEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 9999999999999999999888999999875
No 22
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-42 Score=299.75 Aligned_cols=179 Identities=24% Similarity=0.243 Sum_probs=167.4
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.++ .++..++++||++|++|++|++||+.+|++.++++++.+++.|++.++++
T Consensus 29 ~G~tvIgik~kdgVvla~d~r~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~ 102 (212)
T cd03751 29 NSGTAIGIRCKDGVVLAVEKLVTS------KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTP 102 (212)
T ss_pred cCCCEEEEEeCCEEEEEEEccccc------cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 689999999999999999999986 66667789999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.++++|+++++.| .+||++++||||||++| |+||++||+|++.+++++|+|+|+..|+++||++|+++||
T Consensus 103 ~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~g-p~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms 181 (212)
T cd03751 103 IPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDG-PQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELT 181 (212)
T ss_pred CCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCc-CEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCC
Confidence 99999999999976543 36999999999999665 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
++||++++++||+.+++.+...+.+|||+++
T Consensus 182 ~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 182 CREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999866567899999874
No 23
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.1e-42 Score=305.25 Aligned_cols=192 Identities=24% Similarity=0.301 Sum_probs=177.2
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.+. .++..++.+||++|++||+|++||..+|++.++++++.+++.|+++++++
T Consensus 35 ~G~t~igik~~dgVvlaad~r~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 108 (241)
T PRK03996 35 RGTTAVGVKTKDGVVLAVDKRITS------PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEP 108 (241)
T ss_pred hCCCEEEEEeCCEEEEEEeccCCC------cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999999999999986 67778899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.++++|++.++.| .+||++++||||||.+| |+||++||+|++.+++++|+|+|+..++++||++|+++|+
T Consensus 109 i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~g-p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 187 (241)
T PRK03996 109 IGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGG-PRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLS 187 (241)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCc-CEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCC
Confidence 99999999999987644 35999999999999766 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc-EEEccCccc
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ-VSSYKPYKV 201 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~-~~~l~~~~~ 201 (260)
++||++++++||..+..+ ..++++++|++|+++++ ++.+.+.++
T Consensus 188 ~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei 232 (241)
T PRK03996 188 LEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEI 232 (241)
T ss_pred HHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHH
Confidence 999999999999999875 45799999999999873 666655444
No 24
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-42 Score=296.04 Aligned_cols=178 Identities=22% Similarity=0.224 Sum_probs=166.3
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.+. .+ .++.+||++|++||+|++||+.+|++.+.++++.+++.|+++++++
T Consensus 26 ~G~t~IgIk~~dgVvlaad~r~~~------~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 97 (211)
T cd03749 26 QGSATVGLKSKTHAVLVALKRATS------EL--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSP 97 (211)
T ss_pred cCCCEEEEEeCCEEEEEEeccCcc------cc--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999999999999877 33 3467999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC--CC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK--EN 154 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~--~~ 154 (260)
++++.+++.++.+++++ .+||++++||+|||++| |+||++||+|++.+++++|+|+|+..|+++||++|+ ++
T Consensus 98 ~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~g-p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ 176 (211)
T cd03749 98 IPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESG-PHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFED 176 (211)
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCC-CeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccC
Confidence 99999999999887643 35999999999999776 999999999999999999999999999999999999 59
Q ss_pred CCHHHHHHHHHHHHHHHHhhcC-CCCCcEEEEEEE
Q psy15384 155 LSEKEGLTLMVDAIKAGILYDL-GSGSKVDVTIIR 188 (260)
Q Consensus 155 ms~eeai~la~~al~~~~~~D~-~sg~~iev~vit 188 (260)
||++||+++++++|+.++.+|. .++++|||++|+
T Consensus 177 ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 177 CSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999999999999999999886 789999999984
No 25
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-41 Score=295.21 Aligned_cols=178 Identities=20% Similarity=0.305 Sum_probs=167.4
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.+. .++..++++||++|++||+|++||+.+|++.+.+.++.+++.|++.++++
T Consensus 26 ~G~t~igik~~dgVvlaad~r~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 99 (213)
T cd03753 26 LGSTAIGIKTKEGVVLAVEKRITS------PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEP 99 (213)
T ss_pred cCCCEEEEEeCCEEEEEEecccCC------cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 799999999999999999999986 56777889999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc----------CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhcc
Q psy15384 82 IPVICPVTMIKQTLYKYH----------GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW 151 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~----------~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y 151 (260)
++++.++++|+++++++. +||++++||||||+.| |+||++||+|++.+++++|+|+++..++++||++|
T Consensus 100 i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~g-p~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~ 178 (213)
T cd03753 100 MTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENG-PQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKY 178 (213)
T ss_pred CCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCC-CEEEEECCCCCeecccEEEECCCcHHHHHHHHhhc
Confidence 999999999999887642 6999999999999766 99999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 152 KENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 152 ~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
+++||++||++++++||+.+..++ .+++++||+++
T Consensus 179 ~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 179 HKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred cCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 999999999999999999987766 57899999985
No 26
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-41 Score=293.26 Aligned_cols=179 Identities=25% Similarity=0.348 Sum_probs=169.6
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.+. .++..++.+||++|++|++|++||+.+|++.+.+.++.+++.|+++++++
T Consensus 27 ~G~t~igik~~dgvvla~d~~~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~ 100 (211)
T cd03756 27 RGTTALGIKCKEGVVLAVDKRITS------KLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEP 100 (211)
T ss_pred cCCCEEEEEECCEEEEEEeccCCC------cccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999975 67778899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.++++|+..++.| .+||++++||||||+.| |+||++||+|++.+++++|+|+|+..++++||++|+++|+
T Consensus 101 ~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~-~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~ 179 (211)
T cd03756 101 IDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGG-PRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMS 179 (211)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCC-CEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCC
Confidence 99999999999887554 24999999999999765 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEE
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIR 188 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit 188 (260)
++||++++++||..+..+|. ++++++|++|+
T Consensus 180 ~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 180 LEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred HHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 99999999999999998887 89999999997
No 27
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=3.1e-41 Score=284.17 Aligned_cols=179 Identities=33% Similarity=0.493 Sum_probs=172.1
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.+. |.....++++|||+|+++++|+++|..+|++.+.+.++.++..|+++++++++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~-----~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 75 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTS-----GLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIP 75 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCC-----cCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6899999999999999999999 77777899999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384 84 VICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG 160 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea 160 (260)
++.++++|++++++++ +||++++|+||+|.+++|+||++||+|++.+++++|+|+|+..++++||+.|+++||++||
T Consensus 76 ~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea 155 (182)
T cd01906 76 VEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEA 155 (182)
T ss_pred HHHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHH
Confidence 9999999999999876 7999999999999855699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 161 LTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 161 i~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
++++++||+.+.++|..++.+++|++|
T Consensus 156 ~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 156 IELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999999988999999985
No 28
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.6e-41 Score=293.45 Aligned_cols=179 Identities=27% Similarity=0.391 Sum_probs=169.9
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+||++++||||||+|+|.+. +++..++.+|||+|++|++|+++|..+|++.+.+.++.+++.|+++++++
T Consensus 26 ~G~tvigi~~~dgVvlaaD~~~~~------~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~ 99 (209)
T cd01911 26 NGSTAVGIKGKDGVVLAVEKKVTS------KLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEP 99 (209)
T ss_pred cCCCEEEEEECCEEEEEEEecCCc------cccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 799999999999999999999987 46667899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.++++|++++++| .+||++++||||+|++++|+||.+||.|++.+++++++|+|+..++++||++|+++|+
T Consensus 100 ~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms 179 (209)
T cd01911 100 IPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLT 179 (209)
T ss_pred CCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCC
Confidence 99999999999988654 2499999999999987669999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
++||++++++||+++..+|. ++++++|+++
T Consensus 180 ~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 180 LEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred HHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 99999999999999999999 9999999985
No 29
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=3e-41 Score=286.07 Aligned_cols=181 Identities=31% Similarity=0.399 Sum_probs=168.3
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccC-cCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHN-CSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT 80 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~-~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (260)
+|+|+|||+++||||||+|+|.+. |+.+..++ ++|||+|++|++|++||..+|++.+.++++.+++.|++.++.
T Consensus 3 ~G~t~vgi~~~dgvvla~d~~~~~-----g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~ 77 (190)
T PF00227_consen 3 NGTTVVGIKGKDGVVLAADKRISY-----GSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGR 77 (190)
T ss_dssp TSBEEEEEEESSEEEEEEEEEEEE-----TTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEEEEECCEEEEEEcccccc-----ccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCc
Confidence 799999999999999999999998 77775555 799999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHH----Hh-ccCcceeeEEEEEEeCCCCceEEEEeecceEEee-CEEEEcCChHHHHHHHHhccCCC
Q psy15384 81 DIPVICPVTMIKQTL----YK-YHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKEN 154 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l----~~-~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~-~~~aiGsgs~~a~~~Le~~y~~~ 154 (260)
+++++.+++.+++.+ +. +++|+++++|+||+|++++|+||.+||+|++.++ +++|+|+|+..++++||+.|+++
T Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~ 157 (190)
T PF00227_consen 78 PISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPD 157 (190)
T ss_dssp GTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTT
T ss_pred cccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCC
Confidence 999997766665543 32 3569999999999998888999999999999999 69999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 155 LSEKEGLTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 155 ms~eeai~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
||++||++++++||+.+.++|..++++++|+||
T Consensus 158 ~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 158 LSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp SSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999999999999999987
No 30
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6e-41 Score=291.43 Aligned_cols=179 Identities=21% Similarity=0.226 Sum_probs=165.6
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+++||||||+|+|.+. .++..++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++
T Consensus 28 ~g~t~igi~~~d~Vvlaad~r~~~------~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 101 (215)
T cd03754 28 AGLTSVAVRGKDCAVVVTQKKVPD------KLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYE 101 (215)
T ss_pred CCccEEEEEeCCEEEEEEeccccc------cccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCC
Confidence 488999999999999999999987 45556689999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHH---hc--cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCC--
Q psy15384 82 IPVICPVTMIKQTLY---KY--HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN-- 154 (260)
Q Consensus 82 i~v~~l~~~l~~~l~---~~--~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~-- 154 (260)
++++.++++++++++ ++ .+||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||++|+++
T Consensus 102 i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~ 181 (215)
T cd03754 102 MPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPD 181 (215)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccc
Confidence 999999999998633 33 24999999999999765699999999999999999999999999999999999985
Q ss_pred C--CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 155 L--SEKEGLTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 155 m--s~eeai~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
| |++||++++++||..+.+||.. ++++||+++
T Consensus 182 ~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~ 215 (215)
T cd03754 182 LIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV 215 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence 7 9999999999999999999975 899999875
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=4.3e-40 Score=288.29 Aligned_cols=187 Identities=19% Similarity=0.252 Sum_probs=165.9
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC-C
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAH-T 80 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~ 80 (260)
.|+|+|||+++||||||+|++.. +.+||++|+|||+|++||+.+|++.+++.++.+++.|++.++ .
T Consensus 26 ~g~T~VGIk~kdgVVLaaek~~~-------------~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~ 92 (228)
T TIGR03691 26 RGRSVVVLTYADGILFVAENPSR-------------SLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRR 92 (228)
T ss_pred cCCcEEEEEeCCeEEEEEecCCC-------------CcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 58999999999999999998632 389999999999999999999999999999999999999998 6
Q ss_pred CCChHhHHHHHHHHHHh----ccCcceeeEEEEEEeC-CCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCC
Q psy15384 81 DIPVICPVTMIKQTLYK----YHGYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKEN 154 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~----~~~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~ 154 (260)
+++++.+++.+++.+.. +.+||+|++||||||+ +.+|+||++||+|++.+++ ++|+|+|+..++++||++|+++
T Consensus 93 ~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ 172 (228)
T TIGR03691 93 DVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDG 172 (228)
T ss_pred CccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCC
Confidence 89999998887776543 3579999999999985 3459999999999999976 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh--hcCCCCCcEEEEEEEcCC---cEEEccCccc
Q psy15384 155 LSEKEGLTLMVDAIKAGIL--YDLGSGSKVDVTIIRKNG---QVSSYKPYKV 201 (260)
Q Consensus 155 ms~eeai~la~~al~~~~~--~D~~sg~~iev~vit~~g---~~~~l~~~~~ 201 (260)
||++||++++++||+.++. +|..++.++||++|++++ +++.|.+.++
T Consensus 173 ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei 224 (228)
T TIGR03691 173 LSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEAL 224 (228)
T ss_pred CCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHH
Confidence 9999999999999999964 556789999999999754 2777755544
No 32
>KOG0183|consensus
Probab=100.00 E-value=1.2e-41 Score=286.15 Aligned_cols=205 Identities=20% Similarity=0.292 Sum_probs=189.2
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+||++++|+|||+.+++... .|++.+...||..+++|+++++||+.||++.|++++|.+|+.|+++.+.+
T Consensus 29 kGstaVgvrg~~~vvlgvEkkSv~------~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edp 102 (249)
T KOG0183|consen 29 KGSTAVGVRGNNCVVLGVEKKSVP------KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDP 102 (249)
T ss_pred cCceEEEeccCceEEEEEeecchh------hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCC
Confidence 699999999999999999999986 89999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCC--
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN-- 154 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~-- 154 (260)
+++++++++|+++-++| ++|||++.||+|||++|.|+||+++|+|.+.+|++.|||.++..++.+||++|.+.
T Consensus 103 vtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~ 182 (249)
T KOG0183|consen 103 VTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAI 182 (249)
T ss_pred cHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccccc
Confidence 99999999999875544 35999999999999999999999999999999999999999999999999999976
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeecccccc
Q psy15384 155 LSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPS 234 (260)
Q Consensus 155 ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~ 234 (260)
.+..++++|++++|.+....+ +.|++++|+++++.++++ .+.+|.++|..|+.|..
T Consensus 183 ~~~~~~ikL~ir~LleVvqs~---~~nie~aVm~~~~~~~~l---------------------~~~~I~~~v~~ie~E~e 238 (249)
T KOG0183|consen 183 ATEGETIKLAIRALLEVVQSG---GKNIEVAVMKRRKDLKML---------------------ESEEIDDIVKEIEQEEE 238 (249)
T ss_pred cccccHHHHHHHHHHHHhhcC---CCeeEEEEEecCCceeec---------------------CHHHHHHHHHHHHHHHH
Confidence 688999999999999998763 689999999998767777 67788899999987744
Q ss_pred cc
Q psy15384 235 EG 236 (260)
Q Consensus 235 ~~ 236 (260)
++
T Consensus 239 ~e 240 (249)
T KOG0183|consen 239 AE 240 (249)
T ss_pred HH
Confidence 33
No 33
>KOG0185|consensus
Probab=100.00 E-value=3.7e-40 Score=280.43 Aligned_cols=208 Identities=22% Similarity=0.321 Sum_probs=197.9
Q ss_pred CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhc-CCCCC
Q psy15384 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQ-FPKAH 79 (260)
Q Consensus 1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~-~~~~~ 79 (260)
||||++||++|+||||||||+..++ |++...++++||++|+||++++++|..+|+|.+.+.+.....+. .+..+
T Consensus 39 vTGTSVla~ky~~GVviaaD~lgSY-----GslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg 113 (256)
T KOG0185|consen 39 VTGTSVLALKYKDGVVIAADTLGSY-----GSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDG 113 (256)
T ss_pred eccceEEEEEecCceEEEecccccc-----hhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccc
Confidence 6999999999999999999999999 99999999999999999999999999999999999998887764 36777
Q ss_pred CCCChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC---C
Q psy15384 80 TDIPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK---E 153 (260)
Q Consensus 80 ~~i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~---~ 153 (260)
..+.++.++++|.++||++| .|++.+++|||+|.+|.|+|-++|.-|..++.+..|+|.|.+.|.++|++.|+ +
T Consensus 114 ~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~ 193 (256)
T KOG0185|consen 114 QSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGE 193 (256)
T ss_pred cccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccch
Confidence 89999999999999999876 49999999999999899999999999999999999999999999999999998 5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccC
Q psy15384 154 NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCII 214 (260)
Q Consensus 154 ~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~ 214 (260)
+++.+||..++.+||+..++||+.+.++++|++|+++| +++-.|+++...|.+.+..+.|
T Consensus 194 ~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG-v~i~~p~qv~~~W~fa~~~~gy 253 (256)
T KOG0185|consen 194 DLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG-VTISKPYQVKTNWDFAETIKGY 253 (256)
T ss_pred hhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc-eEecCceeeeecchhhhhcccc
Confidence 79999999999999999999999999999999999999 9999999999999998777666
No 34
>KOG0175|consensus
Probab=100.00 E-value=1.3e-39 Score=280.16 Aligned_cols=194 Identities=24% Similarity=0.380 Sum_probs=189.1
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||.+|.+|+.|||+|+|+|++. |++|.+..++||..||++++-.+||-+|||+...+.+.++|++|++.+++.
T Consensus 70 hGTTTLAF~f~~GvivAvDSRAs~-----G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnker 144 (285)
T KOG0175|consen 70 HGTTTLAFKFKGGVIVAVDSRASA-----GSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKER 144 (285)
T ss_pred CCceEEEEEecCcEEEEEeccccc-----cceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence 699999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhccCc-ceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384 82 IPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG 160 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~~p-~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea 160 (260)
|+|..+.++|+++++||+|. +.+..+|+|||+.| |.||+||.+|+....+-+++||||.+|.++|++.|++|||.|||
T Consensus 145 iSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA 223 (285)
T KOG0175|consen 145 ISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEA 223 (285)
T ss_pred eehHHHHHHHHHHHhhccCcchhheeeEeeccCCC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHH
Confidence 99999999999999999995 89999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384 161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL 202 (260)
Q Consensus 161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~ 202 (260)
.+|+++||.++.+||.+||+-+.++.|+++| +..+.+..+.
T Consensus 224 ~~L~rrAI~hAThRDaySGG~vnlyHv~edG-W~~v~~~Dv~ 264 (285)
T KOG0175|consen 224 YDLARRAIYHATHRDAYSGGVVNLYHVKEDG-WVKVSNTDVS 264 (285)
T ss_pred HHHHHHHHHHHHhcccccCceEEEEEECCcc-ceecCCccHH
Confidence 9999999999999999999999999999999 9988887663
No 35
>KOG0181|consensus
Probab=100.00 E-value=3.3e-40 Score=273.92 Aligned_cols=192 Identities=19% Similarity=0.334 Sum_probs=180.2
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
.|.+.|||+..||||||++++..+ .++...++.|++.|.+||+|..||+.+|++.+++..|+.++.|..-|+++
T Consensus 31 ~G~~SvGi~A~nGvVlatekk~~s------~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~ 104 (233)
T KOG0181|consen 31 NGQTSVGIKAANGVVLATEKKDVS------PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEP 104 (233)
T ss_pred CCCCceeeeecCceEEEeccCCCC------ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCC
Confidence 688999999999999999999887 89999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc---c--CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY---H--GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~---~--~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
||+..+++.++..|+.| . +|||++++|+|||+.+ |.||++||+|+++.|+++|+|.+...++.+||++|+++|.
T Consensus 105 ~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~-p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edle 183 (233)
T KOG0181|consen 105 IPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGG-PLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLE 183 (233)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCc-eeEEEECCccceeehhhhhhccCcchHHHHHHHHhccccc
Confidence 99999999999988765 3 3999999999999775 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL 202 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~ 202 (260)
++++++.|+.+|++.++... +.+||||+++..++ |+.+.+.+++
T Consensus 184 ldd~ihtailtlkE~fege~-~~~nieigv~~~~~-F~~lt~~eI~ 227 (233)
T KOG0181|consen 184 LDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENG-FRRLTPAEIE 227 (233)
T ss_pred cchHHHHHHHHHHHHhcccc-ccCceEEEEecCCc-eeecCHHHHH
Confidence 99999999999999998887 47999999999888 9988555543
No 36
>KOG0174|consensus
Probab=100.00 E-value=3e-38 Score=262.09 Aligned_cols=195 Identities=30% Similarity=0.517 Sum_probs=186.2
Q ss_pred CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT 80 (260)
Q Consensus 1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (260)
.+||||+|++|++||||++|+|.+. |.++.++-.+||.+|.|+|+||-||.+||.|.+.+.++..+..|..+++.
T Consensus 17 stGTTImAv~y~gGVvlGaDSRTs~-----GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~ 91 (224)
T KOG0174|consen 17 STGTTIMAVEYDGGVVLGADSRTST-----GAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENK 91 (224)
T ss_pred ccCceEEEEEEcCcEEEeccCCccc-----hHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384 81 DIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG 160 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea 160 (260)
++.|..+++.++++.|+|+..+.+.+||||||+..+.++|.+---|+..+.+++.-||||.+.+++++.+|+|+||+||+
T Consensus 92 ~p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~ 171 (224)
T KOG0174|consen 92 PPLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEEC 171 (224)
T ss_pred CchHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHH
Confidence 99999999999999999999999999999999876699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEE--EccCccc
Q psy15384 161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVS--SYKPYKV 201 (260)
Q Consensus 161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~--~l~~~~~ 201 (260)
+.++++|+..++.||-.||+-|.+.+|+++| ++ ++.+.+.
T Consensus 172 ~~fvk~Av~lAi~rDGsSGGviR~~~I~~~G-ver~~~~~d~~ 213 (224)
T KOG0174|consen 172 VRFVKNAVSLAIERDGSSGGVIRLVIINKAG-VERRFFPGDKL 213 (224)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEEccCC-ceEEEecCCcc
Confidence 9999999999999999999999999999999 54 4444443
No 37
>KOG0178|consensus
Probab=100.00 E-value=3.3e-36 Score=252.78 Aligned_cols=184 Identities=23% Similarity=0.313 Sum_probs=170.8
Q ss_pred cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI 82 (260)
Q Consensus 3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (260)
.+|+||+.++||||||+++|.++||+ ..+...+||++|+|||+|+.+|+.+|+..|++.+|..+|.|.++|++++
T Consensus 31 aGt~iGila~DGvvLa~e~k~t~kll-----~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~i 105 (249)
T KOG0178|consen 31 AGTCIGILASDGVVLAGENKVTSKLL-----DTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEI 105 (249)
T ss_pred hcceeEEEecCceEEEeecccchhhh-----hccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999998543 3445789999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHH---HHhccC--cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCC-C
Q psy15384 83 PVICPVTMIKQT---LYKYHG--YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENL-S 156 (260)
Q Consensus 83 ~v~~l~~~l~~~---l~~~~~--p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~m-s 156 (260)
|++.+++.|+++ ++||+| |||||+|.+|||..-+.+||+.||+|++..|+++++|.++.+|++.|.+.|++++ +
T Consensus 106 P~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~ 185 (249)
T KOG0178|consen 106 PCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDEND 185 (249)
T ss_pred cHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhcccccc
Confidence 999999998776 678865 9999999999997666999999999999999999999999999999999999875 5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g 191 (260)
++||+.+|++.|......+..+...+|++.++++.
T Consensus 186 ~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~ 220 (249)
T KOG0178|consen 186 LEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDC 220 (249)
T ss_pred HHHHHHHHHHHHHhhcccCCCChhheEEEEEEecC
Confidence 99999999999999999888889999999999986
No 38
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=4.7e-35 Score=245.92 Aligned_cols=166 Identities=23% Similarity=0.249 Sum_probs=150.3
Q ss_pred cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEe-cCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRL-SEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
|||+|||+++||||||+|+|++. |.++.+++++||++| ++|++||+||..||++.+.+.++.+++.|+...
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~-----g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~--- 72 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTL-----GNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL--- 72 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEe-----CcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc---
Confidence 79999999999999999999999 999999999999999 999999999999999999999999999998422
Q ss_pred CChHhHHHHHHHHH-HhccCcceeeEEEEEEeCCCCceEEEEeecceEEee--CEEEEcCChHHHHHHHHhccC-CCCCH
Q psy15384 82 IPVICPVTMIKQTL-YKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGWK-ENLSE 157 (260)
Q Consensus 82 i~v~~l~~~l~~~l-~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y~-~~ms~ 157 (260)
++.++++++.++ +.|+.|+.+++|++ |. |+||.+||.|+..+. ++.|+|||+.+|.++||++|+ ++|
T Consensus 73 --~~~~a~l~~~l~~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m-- 143 (172)
T PRK05456 73 --LRAAVELAKDWRTDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL-- 143 (172)
T ss_pred --HHHHHHHHHHHHhccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC--
Confidence 466666665543 45567888999994 43 799999999999877 899999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy15384 158 KEGLTLMVDAIKAGILYDLGSGSKVDVTI 186 (260)
Q Consensus 158 eeai~la~~al~~~~~~D~~sg~~iev~v 186 (260)
||++++++|++++.+||..|+++|+|-.
T Consensus 144 -eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 -SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred -CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9999999999999999999999999864
No 39
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=1e-34 Score=242.79 Aligned_cols=166 Identities=23% Similarity=0.226 Sum_probs=149.5
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecC-eEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSE-KIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI 82 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (260)
||+|||+++||||||+|+|++. |.++.+++.+||++|++ |++||+||..+|++.+.++++.++++|+++.++
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~-----G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-- 73 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTL-----GNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-- 73 (171)
T ss_pred CeEEEEEECCEEEEEECCceEe-----ccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH--
Confidence 7999999999999999999999 99999999999999998 999999999999999999999999999988773
Q ss_pred ChHhHHHHHHHHH-HhccCcceeeEEEEEEeCCCCceEEEEeecceEEee--CEEEEcCChHHHHHHHHhccCCC-CCHH
Q psy15384 83 PVICPVTMIKQTL-YKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGWKEN-LSEK 158 (260)
Q Consensus 83 ~v~~l~~~l~~~l-~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y~~~-ms~e 158 (260)
.++++++.++ +++++++.+.++++++ ++||.+||.|+..+. ++.++||||.+|.++||.+|+++ ||
T Consensus 74 ---~aa~l~~~l~~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms-- 143 (171)
T cd01913 74 ---AAVELAKDWRTDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS-- 143 (171)
T ss_pred ---HHHHHHHHHHhccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC--
Confidence 5577766664 5666666677777543 489999999999998 49999999999999999999995 99
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 159 EGLTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 159 eai~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
+.++|.+|++.+++||..||++|+|-.+
T Consensus 144 -~~~la~~Av~~A~~rd~~tg~~i~~~~~ 171 (171)
T cd01913 144 -AEEIARKALKIAADICIYTNHNITVEEL 171 (171)
T ss_pred -HHHHHHHHHHHHHhhCcccCCCEEEEeC
Confidence 5599999999999999999999998653
No 40
>KOG0179|consensus
Probab=100.00 E-value=1.6e-34 Score=242.45 Aligned_cols=188 Identities=22% Similarity=0.271 Sum_probs=179.3
Q ss_pred CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT 80 (260)
Q Consensus 1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (260)
++|+|+|||.+.|+.|+|+|||.+. |-.+.++...|||+++|+++++.+|+.||+..|.+.++..+..|++++++
T Consensus 27 ~NGGT~vaIaG~dFavvA~DTR~s~-----gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k 101 (235)
T KOG0179|consen 27 DNGGTTVAIAGEDFAVVAGDTRMSS-----GYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNK 101 (235)
T ss_pred cCCceEEEEcCCceEEEeccccccc-----ceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccc
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC-------
Q psy15384 81 DIPVICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK------- 152 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~------- 152 (260)
.+++..+|++|+.+||..|- ||.+..|++|+|++|++.+|+.||-|++....+.|-|+++.+.+++|+....
T Consensus 102 ~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 102 KMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred cccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 99999999999999998764 9999999999999999999999999999999999999999999999997431
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEE
Q psy15384 153 ----ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVS 194 (260)
Q Consensus 153 ----~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~ 194 (260)
..+|+|+|+.|+.+++..+.+||..+|++++|||++++| ++
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~g-V~ 226 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDG-VE 226 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCC-EE
Confidence 358999999999999999999999999999999999999 55
No 41
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=7.1e-34 Score=237.71 Aligned_cols=165 Identities=22% Similarity=0.228 Sum_probs=149.0
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEe-cCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRL-SEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI 82 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (260)
||+|||+++||||||+|+|++. |.++.+++.+||++| ++|++||+||..||++.+.++++.++++|+++.
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~-----g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~---- 71 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTL-----GNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL---- 71 (171)
T ss_pred CeEEEEEECCEEEEEECCceEe-----ceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch----
Confidence 7999999999999999999999 999999999999999 599999999999999999999999999998854
Q ss_pred ChHhHHHHHHHH-HHhccCcceeeEEEEEEeCCCCceEEEEeecceEEee--CEEEEcCChHHHHHHHHhcc-CCCCCHH
Q psy15384 83 PVICPVTMIKQT-LYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGW-KENLSEK 158 (260)
Q Consensus 83 ~v~~l~~~l~~~-l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y-~~~ms~e 158 (260)
.+.++++++++ .++|.+++.+.+|++|+ ++||.+||.|+..+. +++++||||.+|.++||.+| +++|+
T Consensus 72 -~~~~a~l~~~~~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s-- 143 (171)
T TIGR03692 72 -TRAAVELAKDWRTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS-- 143 (171)
T ss_pred -HHHHHHHHHHHhhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC--
Confidence 37778888875 35665567788777633 489999999999996 69999999999999999999 57778
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy15384 159 EGLTLMVDAIKAGILYDLGSGSKVDVTI 186 (260)
Q Consensus 159 eai~la~~al~~~~~~D~~sg~~iev~v 186 (260)
|+++|.+|++.+++||..||++|+|-.
T Consensus 144 -a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 -AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred -HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999999999999999999999999865
No 42
>KOG0177|consensus
Probab=100.00 E-value=3.9e-34 Score=236.80 Aligned_cols=189 Identities=21% Similarity=0.280 Sum_probs=179.9
Q ss_pred eEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCCh
Q psy15384 5 TICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIPV 84 (260)
Q Consensus 5 tivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v 84 (260)
+++||++.|+|++|+||.+.. +-++.+.+.+|+|.|++++.++++|.++|+-++.+++++++++|++++|.++++
T Consensus 3 ~llGIkg~dfvilAsDt~~~~-----si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp 77 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAAR-----SILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSP 77 (200)
T ss_pred eEEEeecCCEEEEeecchhhc-----ceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCH
Confidence 789999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhc---cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384 85 ICPVTMIKQTLYKY---HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL 161 (260)
Q Consensus 85 ~~l~~~l~~~l~~~---~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai 161 (260)
..++++.++.+..+ +.||.+++|+||+|++.+|.||++|..|+..+.+|++.|.++.++.++|++.|+|+||.+||+
T Consensus 78 ~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~ 157 (200)
T KOG0177|consen 78 SAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEAL 157 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHH
Confidence 99999999988654 569999999999998766999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCc
Q psy15384 162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPY 199 (260)
Q Consensus 162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~ 199 (260)
.+..+|+.++..|-...-.++.|.||++|| ++.+.+.
T Consensus 158 ~lmkKCv~El~kRlvin~~~f~v~IVdkdG-ir~~~~i 194 (200)
T KOG0177|consen 158 DLMKKCVLELKKRLVINLPGFIVKIVDKDG-IRKLDDI 194 (200)
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEcCCC-ceecccc
Confidence 999999999999988788999999999999 8877444
No 43
>KOG0184|consensus
Probab=100.00 E-value=4.5e-33 Score=235.53 Aligned_cols=182 Identities=20% Similarity=0.160 Sum_probs=165.3
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|+|+|||+|||||||++|+..++ +|......+|||.|++||+|+++|+.+|.+.+.++++.++..|+-+|+.+
T Consensus 33 n~~T~IGIk~kdGVVl~vEKli~S------kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~p 106 (254)
T KOG0184|consen 33 NSGTCIGIKCKDGVVLAVEKLITS------KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDP 106 (254)
T ss_pred cCCcEEEEecCCeEEEEEeeeecc------cccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCC
Confidence 589999999999999999999998 77888889999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHh-----ccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYK-----YHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~-----~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
+|...++.+++++.+- .-+||||+.++++||.+| |+||.++|+|.++.++++|+|.|.+.|++.||+.--..|+
T Consensus 107 iP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g-~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt 185 (254)
T KOG0184|consen 107 IPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEG-PQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMT 185 (254)
T ss_pred CchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCC-ceEEEEcCCCCccceeeeeccchhHHHHHHHHhccccccc
Confidence 9999999999997543 347999999999999766 9999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN 190 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~ 190 (260)
.+|+++.+.+.|..+-+......-.+|+.++...
T Consensus 186 ~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~e 219 (254)
T KOG0184|consen 186 CKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEE 219 (254)
T ss_pred HHHHHHHHHheeEeecccccCcceEEEEEEEEee
Confidence 9999999999999775443334456888888763
No 44
>KOG0863|consensus
Probab=100.00 E-value=1.2e-32 Score=234.11 Aligned_cols=190 Identities=21% Similarity=0.214 Sum_probs=172.5
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
.|++.||++.++..||+|-+|..+.| ...++||++|++|+++++||+++|++.|.++++.+|..+++.++++
T Consensus 31 qGsatVGLks~thaVLvAl~r~~seL--------ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~ 102 (264)
T KOG0863|consen 31 QGSATVGLKSRTHAVLVALKRAQSEL--------SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRP 102 (264)
T ss_pred cccceEeecccceEEEeeeccchhHH--------HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCc
Confidence 58999999999999999999988733 3358999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHH---hc--cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC--CC
Q psy15384 82 IPVICPVTMIKQTLY---KY--HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK--EN 154 (260)
Q Consensus 82 i~v~~l~~~l~~~l~---~~--~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~--~~ 154 (260)
++|..++..|.+.++ |+ ++||||.|+|+|+|+.| ||||++.|+|++.++++++||+.|+.|+++||++.. ++
T Consensus 103 ~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~ 181 (264)
T KOG0863|consen 103 LPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFED 181 (264)
T ss_pred ccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhc
Confidence 999999998876554 43 45999999999999988 999999999999999999999999999999999876 58
Q ss_pred CCHHHHHHHHHHHHHHHHhhc-CCCCCcEEEEEEEcCCcEEEccCcc
Q psy15384 155 LSEKEGLTLMVDAIKAGILYD-LGSGSKVDVTIIRKNGQVSSYKPYK 200 (260)
Q Consensus 155 ms~eeai~la~~al~~~~~~D-~~sg~~iev~vit~~g~~~~l~~~~ 200 (260)
++.||.+..+++||+.....| ..++.|++|+|+.+|.+|.++....
T Consensus 182 ~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~ 228 (264)
T KOG0863|consen 182 SSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKD 228 (264)
T ss_pred CCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHH
Confidence 999999999999999999755 5678999999999999888884443
No 45
>KOG0182|consensus
Probab=100.00 E-value=3e-32 Score=229.13 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=175.6
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|-|.|++++||++|+++.++.+. +|++..++..+|+|+.+|+|+++|+.+|++..+.+++.++.++++++|.+
T Consensus 35 ~gltsVavrgkDcavvvsqKkvpD------KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gye 108 (246)
T KOG0182|consen 35 AGLTSVAVRGKDCAVVVTQKKVPD------KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYE 108 (246)
T ss_pred CCCceEEEcCCceEEEEecccCcc------cccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCC
Confidence 478999999999999999999996 88899999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCC--
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN-- 154 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~-- 154 (260)
+|++.||+.++++.+.| ++|+||.+++.|+|++-||.+|.+||.|-+..++++|.|-....+.++||++|+++
T Consensus 109 mp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~ 188 (246)
T KOG0182|consen 109 MPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDID 188 (246)
T ss_pred CCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCcc
Confidence 99999999998765433 57999999999999877799999999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc-EEEc
Q psy15384 155 LSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ-VSSY 196 (260)
Q Consensus 155 ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~-~~~l 196 (260)
.|.+|++++++.||...+.-|.. .+.+||.|++++.+ +++|
T Consensus 189 ~t~~e~ve~ai~al~~sl~~Dfk-~se~EVgvv~~~~p~f~~L 230 (246)
T KOG0182|consen 189 LTFEETVETAISALQSSLGIDFK-SSELEVGVVTVDNPEFRIL 230 (246)
T ss_pred chHHHHHHHHHHHHHHHHhcccC-CcceEEEEEEcCCcceeec
Confidence 67999999999999999999986 58999999999874 7777
No 46
>KOG0180|consensus
Probab=99.97 E-value=7.3e-31 Score=214.49 Aligned_cols=186 Identities=20% Similarity=0.253 Sum_probs=178.4
Q ss_pred CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT 80 (260)
Q Consensus 1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (260)
.+|+++|++++||||.||+|.|.-. -+.-..++.+|||++.|+++++.+|++.|++.|.++++...++|++..++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~-----q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R 80 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGV-----QSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREER 80 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccce-----eeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhc
Confidence 3799999999999999999999987 46777889999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEE-eeCEEEEcCChHHHHHHHHhccCCCCCHH
Q psy15384 81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSH-GHKFCAMGTGLQPAMGILEAGWKENLSEK 158 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~-~~~~~aiGsgs~~a~~~Le~~y~~~ms~e 158 (260)
++.++.++++++.++|+.| +||-+.-+|||+|++++|++...|..|... ..+|++.|.++...+++.|..|+|||..|
T Consensus 81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180|consen 81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence 9999999999999999876 799999999999999999999999999998 56899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384 159 EGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191 (260)
Q Consensus 159 eai~la~~al~~~~~~D~~sg~~iev~vit~~g 191 (260)
+..+.+..||..+++||+.||....+.+|+||+
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdk 193 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRDALSGWGAVVYIITKDK 193 (204)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCeEEEEEccch
Confidence 999999999999999999999999999999998
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=5e-29 Score=203.08 Aligned_cols=160 Identities=25% Similarity=0.304 Sum_probs=152.7
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
+|+||++++||||||+|++.+. +......+..||+.++++++++++|..+|++.+.++++.+++.|++.++.+++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~-----~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 75 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSS-----GLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPIS 75 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCc-----cCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 6899999999999999999998 77776789999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhcc--CcceeeEEEEEEeCCCCceEEEEeecceEEee-CEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384 84 VICPVTMIKQTLYKYH--GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKENLSEKEG 160 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~--~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~-~~~aiGsgs~~a~~~Le~~y~~~ms~eea 160 (260)
+..+++.+++.++.++ +|+++++||||+|+ ++|+||.+||+|++..+ .++++|+++..+.++|++.|+++|+.+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~ 154 (164)
T cd01901 76 VVALAKELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEA 154 (164)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999988775 79999999999998 55999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy15384 161 LTLMVDAIK 169 (260)
Q Consensus 161 i~la~~al~ 169 (260)
++++.+||.
T Consensus 155 ~~~~~~~l~ 163 (164)
T cd01901 155 VELALKALK 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999986
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.5e-15 Score=119.63 Aligned_cols=170 Identities=22% Similarity=0.239 Sum_probs=137.7
Q ss_pred CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecC-eEEEEecCChhHHHHHHHHHHHHHhhcCCCCC
Q psy15384 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSE-KIYCCGAGSAADMKRLSGLVEANLECQFPKAH 79 (260)
Q Consensus 1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~ 79 (260)
+++|||++++-++-|+||+|.+.|. |+.+...+..|+.+|.. +++.+++|.+||+..|.+++..+++.|.-+.
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtl-----G~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L- 75 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTL-----GNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDL- 75 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEee-----cceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcH-
Confidence 4689999999999999999999999 99999999999999965 8999999999999999999999999996221
Q ss_pred CCCChHhHHHHHHHHHHh-ccCcceeeEEEEEEeCCCCceEEEEeecceEEe--eCEEEEcCChHHHHHHHHhccCC-CC
Q psy15384 80 TDIPVICPVTMIKQTLYK-YHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHG--HKFCAMGTGLQPAMGILEAGWKE-NL 155 (260)
Q Consensus 80 ~~i~v~~l~~~l~~~l~~-~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~--~~~~aiGsgs~~a~~~Le~~y~~-~m 155 (260)
.+.++++.+++... +.+.+.+-++|+ |++ ++|-+...|-..+ .+..|||||..+|.+..+..++. ++
T Consensus 76 ----~raavelaKdwr~Dk~lr~LEAmllVa--d~~---~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~l 146 (178)
T COG5405 76 ----FRAAVELAKDWRTDKYLRKLEAMLLVA--DKT---HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTEL 146 (178)
T ss_pred ----HHHHHHHHHhhhhhhHHHHHhhheeEe--CCC---cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCC
Confidence 24556666666543 234566777776 554 4888999998884 45999999999999999888864 66
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEE
Q psy15384 156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIR 188 (260)
Q Consensus 156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit 188 (260)
| |.+++.++|+.+-+-+.+++.||.|-.+.
T Consensus 147 s---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 147 S---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred C---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 6 66689999998877777777777766543
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.1e-12 Score=105.47 Aligned_cols=190 Identities=16% Similarity=0.272 Sum_probs=148.4
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEec---C-eEEEEecCChhHHHHHHHHHHHHHhhcCCCC-
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLS---E-KIYCCGAGSAADMKRLSGLVEANLECQFPKA- 78 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~---~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~- 78 (260)
|-+||++...|.|+++|+|... | +-.-...+|+|-.. + -++++.||..|=.|.+++.+.+..+..+...
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNA-----G-vD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L 75 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNA-----G-VDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSL 75 (255)
T ss_pred ceEEEEEeccceEEeccccccc-----C-chHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhh
Confidence 5689999999999999999887 4 33345678887664 3 3778999999999999999988876332211
Q ss_pred CCCCChHhHHHHHHHH---HHhccC--------cceeeEEEEEEeCCCCceEEEEeecceEEe----eCEEEEcCChHHH
Q psy15384 79 HTDIPVICPVTMIKQT---LYKYHG--------YLMCAFIIGGIDSAGGNQLFSIFQHGSSHG----HKFCAMGTGLQPA 143 (260)
Q Consensus 79 ~~~i~v~~l~~~l~~~---l~~~~~--------p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~----~~~~aiGsgs~~a 143 (260)
-.-+++-.++.++... ++.+.. .|.|++|+||.=..+-|.||.|.|.|++.+ -+|.-+|.. .+-
T Consensus 76 ~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYG 154 (255)
T COG3484 76 LNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYG 154 (255)
T ss_pred hcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccC
Confidence 1123444555555443 232211 489999999987555589999999999995 479999976 578
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384 144 MGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201 (260)
Q Consensus 144 ~~~Le~~y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~ 201 (260)
+++|++.+..+++++|+.++++-.+...+..++..|-++++.++.+|. +.+-..+.+
T Consensus 155 KPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds-~~v~~~~ri 211 (255)
T COG3484 155 KPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS-FSVRHTLRI 211 (255)
T ss_pred chhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc-eeeeeeeEe
Confidence 999999999999999999999999999999999999999999999998 765555544
No 50
>PF12465 Pr_beta_C: Proteasome beta subunits C terminal ; InterPro: IPR024689 This domain is found in the C terminus of beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway []. This domain is approximately 40 amino acids in length. It is found in association with PF00227 from PFAM. It contains a conserved GTT sequence motif and a single completely conserved residue Y that may be functionally important.; PDB: 3UN8_H 2GPL_V 3E47_H 3OEV_H 3SDK_V 3BDM_H 3GPJ_H 3DY3_H 3NZW_H 3OEU_V ....
Probab=97.75 E-value=1.5e-05 Score=50.38 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=12.7
Q ss_pred cCCCCcccccccCCCCCcceeeeeeeeccccccccc
Q psy15384 202 LSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGK 237 (260)
Q Consensus 202 ~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~ 237 (260)
+|.++.|+..|+||+|||++|++.| ++..++++|.
T Consensus 1 pN~kg~r~~~Ykf~~GTTaVL~e~V-~~~~~v~eE~ 35 (38)
T PF12465_consen 1 PNEKGERQGSYKFKRGTTAVLKEKV-PLKLDVVEET 35 (38)
T ss_dssp TT-----SS-----TT-S-EEEEEE-E---------
T ss_pred CCcCcccccccccCCCceeeEEEEe-ccEeEEEEEE
Confidence 4678889999999999999999999 7777776654
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.51 E-value=0.17 Score=43.19 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=43.3
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC
Q psy15384 141 QPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN 190 (260)
Q Consensus 141 ~~a~~~Le~~y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~ 190 (260)
+.|...|.++|++.|+++++..+..++|+.+...-+..+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 45778899999999999999999999999998777777788998887654
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.40 E-value=5.4 Score=35.45 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=93.1
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
|-+|+-.++||.|||.|+|.- .+-|.-.|.+.|-+. +..|.--+
T Consensus 2 tLviay~gknGaviaGDrR~i---------------------------~frgdee~re~lEek---------LYsGeIkt 45 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRREI---------------------------TFRGDEEDREKLEEK---------LYSGEIKT 45 (293)
T ss_pred eEEEEEecCCCcEEeccceEE---------------------------EEecChhHHHHHHHH---------hhcCcccc
Confidence 568999999999999998753 344555665555443 23454445
Q ss_pred hHhHHHHHHHHH-----Hhcc---CcceeeEEEEEEeCCC-----CceEEEE-------eecceEEe-------eCEEEE
Q psy15384 84 VICPVTMIKQTL-----YKYH---GYLMCAFIIGGIDSAG-----GNQLFSI-------FQHGSSHG-------HKFCAM 136 (260)
Q Consensus 84 v~~l~~~l~~~l-----~~~~---~p~g~sliiaG~D~~g-----~p~Ly~i-------dp~Gs~~~-------~~~~ai 136 (260)
-++|++.+..+- +..+ +-..-++++|-+..-+ .-++|.+ +-.|+... ..+.+.
T Consensus 46 eEEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~ 125 (293)
T COG4079 46 EEELARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVF 125 (293)
T ss_pred HHHHHHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEE
Confidence 566666655531 1111 1234455555554322 1234432 22222211 112333
Q ss_pred cCC--hHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384 137 GTG--LQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191 (260)
Q Consensus 137 Gsg--s~~a~~~Le~~y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g 191 (260)
|.. -..+..+|.++|.+.++++++.++..++|..+...-...++.+++....+.-
T Consensus 126 Gnk~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~ 182 (293)
T COG4079 126 GNKFTKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNV 182 (293)
T ss_pred CcHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCc
Confidence 322 2346778999999999999999999999998876667778899999887643
No 53
>KOG3361|consensus
Probab=92.33 E-value=0.38 Score=38.64 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=40.1
Q ss_pred EEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT 162 (260)
Q Consensus 120 y~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~ 162 (260)
..+|-+|.....+|-..|.||..|-+-+-..|-.++|+|||.+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~k 113 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALK 113 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHh
Confidence 5688899999999999999999999999999999999999973
No 54
>KOG2599|consensus
Probab=49.66 E-value=2.1e+02 Score=26.19 Aligned_cols=66 Identities=14% Similarity=-0.027 Sum_probs=44.3
Q ss_pred eeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--CCCHHHHHHHHHHHHHHHHhh
Q psy15384 103 MCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--NLSEKEGLTLMVDAIKAGILY 174 (260)
Q Consensus 103 g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~ms~eeai~la~~al~~~~~~ 174 (260)
|..+.+.|.+....++.|.+-- -+..-+|.|..++--+|...++. +-++..|++.++.++.+.+.+
T Consensus 196 g~~l~c~gs~~~~~~f~~~ipk------i~~~FtGTGDLfsaLLla~~~~~~~~~~l~~a~e~~ls~~~~viqk 263 (308)
T KOG2599|consen 196 GETLRCIGSSCGSERFRYLIPK------IDGVFTGTGDLFSALLLAWLHESPDNDDLSKAVEQVLSSVQAVIQK 263 (308)
T ss_pred CcEEEEEEeccCCceEEEEecc------cceEEecccHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4456666666544333333322 45667899988877676665553 378899999999999888766
No 55
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=49.42 E-value=12 Score=34.01 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=50.4
Q ss_pred EEEEeC-CCCceEEEEeecceEEeeCEEEEcCC-hHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEE
Q psy15384 108 IGGIDS-AGGNQLFSIFQHGSSHGHKFCAMGTG-LQPAMGILEAGWKE-NLSEKEGLTLMVDAIKAGILYDLGSGSKVDV 184 (260)
Q Consensus 108 iaG~D~-~g~p~Ly~idp~Gs~~~~~~~aiGsg-s~~a~~~Le~~y~~-~ms~eeai~la~~al~~~~~~D~~sg~~iev 184 (260)
+-|.|+ +|.+-......+|.|... ..|.. -...++-|-+.|.+ +||+|+|++|...=...+.+.| ++..|..
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLPR~iG~hp~--sge~I~a 151 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSLPRVIGKHPD--SGEEISA 151 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcCchhhCCCCC--CCcEEEe
Confidence 567884 566667777888888754 55666 56677778889985 8999999999765544444433 4555544
Q ss_pred E
Q psy15384 185 T 185 (260)
Q Consensus 185 ~ 185 (260)
.
T Consensus 152 g 152 (298)
T COG1754 152 G 152 (298)
T ss_pred c
Confidence 3
No 56
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=49.22 E-value=16 Score=26.84 Aligned_cols=40 Identities=28% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCc
Q psy15384 154 NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPY 199 (260)
Q Consensus 154 ~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~ 199 (260)
.+|.+||.+.++++|....+ +++=-+++++.+| +.+.-|.
T Consensus 34 ~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g-~~l~hp~ 73 (95)
T PF08269_consen 34 KLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDG-VVLAHPS 73 (95)
T ss_dssp -----TTHHHHHHHHHH--S-----BTTB--EEE-TTS-BEEEESS
T ss_pred CccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCC-eEEEcCC
Confidence 59999999999999987755 2233889999999 6666555
No 57
>PRK09732 hypothetical protein; Provisional
Probab=42.28 E-value=66 Score=25.87 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc
Q psy15384 153 ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ 192 (260)
Q Consensus 153 ~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~ 192 (260)
+.||++.|.+++..|+..+.+. +.++.|+|++..|.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~ 40 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGH 40 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCC
Confidence 4589999999999999998764 56999999999884
No 58
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=38.44 E-value=44 Score=26.35 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc
Q psy15384 154 NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ 192 (260)
Q Consensus 154 ~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~ 192 (260)
.+|+++|.+++..+++.+.++ +-++-|+|++..|.
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~ 36 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGH 36 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-
T ss_pred CcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCC
Confidence 478999999999999998764 45689999999884
No 59
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=35.25 E-value=67 Score=27.69 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcc
Q psy15384 159 EGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYK 200 (260)
Q Consensus 159 eai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~ 200 (260)
|+++..+..|...+..|......+++.|||-+|+.+...|+.
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~ 63 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFT 63 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechh
Confidence 466777777877888898888999999999998788887774
No 60
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=34.40 E-value=1e+02 Score=25.13 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc
Q psy15384 153 ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ 192 (260)
Q Consensus 153 ~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~ 192 (260)
+.+|+++|.+++..|+.++-+. +.++.+.|++.+|.
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~ 41 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGH 41 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCC
Confidence 5789999999999999988653 78999999999884
No 61
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=30.62 E-value=1.3e+02 Score=23.50 Aligned_cols=52 Identities=15% Similarity=0.331 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCC
Q psy15384 153 ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204 (260)
Q Consensus 153 ~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~ 204 (260)
.+++.+..++....||..++.+......+++|-+=...|.+++.....+-.+
T Consensus 13 k~i~~e~v~~ale~al~~a~kK~~~~~~~~~v~id~~~g~i~v~~~~~VV~d 64 (122)
T PF08529_consen 13 KGIDKEVVIEALEEALIKAYKKKYGPEANIRVEIDEDTGEIKVYRKKEVVED 64 (122)
T ss_dssp CTB-HHHHHHHHHHHHHHHHHCCTTSSSSEEEEEETTTTEEEEEEEEEEETT
T ss_pred hCcCHHHHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCeEEEEEEeeecCC
Confidence 5899999999999999999998877778898887666676777766654333
No 62
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=30.13 E-value=34 Score=22.09 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=21.8
Q ss_pred EcCChHHHHHHHHhcc-CCCCCHHHHHHHHHH
Q psy15384 136 MGTGLQPAMGILEAGW-KENLSEKEGLTLMVD 166 (260)
Q Consensus 136 iGsgs~~a~~~Le~~y-~~~ms~eeai~la~~ 166 (260)
.|.....+..++.+-. .++++.++.++.+++
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 4777777778877776 788999987777654
No 63
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=27.87 E-value=1.3e+02 Score=23.51 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=40.8
Q ss_pred EEEeec-ceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHh
Q psy15384 120 FSIFQH-GSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGIL 173 (260)
Q Consensus 120 y~idp~-Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~la~~al~~~~~ 173 (260)
..+|.+ |......|.+.|..-..|-.-+-..+-.++|++||.++..+-+...+.
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 456777 889899999999886666655555566789999998887666665553
No 64
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=27.67 E-value=1.6e+02 Score=24.12 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=39.6
Q ss_pred eEE-EEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHHHHH
Q psy15384 118 QLF-SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVD 166 (260)
Q Consensus 118 ~Ly-~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~la~~ 166 (260)
.|| .+| .|......|-..|.+...|-+-+-..+-.+.|.+||.++...
T Consensus 44 ~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~ 92 (150)
T COG0822 44 TLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEA 92 (150)
T ss_pred EEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344 355 888999999999999888888888888889999999999833
No 65
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=26.48 E-value=95 Score=20.41 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=25.8
Q ss_pred EEEeecceEEeeCEEEEcCChHHHHHHHHhcc
Q psy15384 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW 151 (260)
Q Consensus 120 y~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y 151 (260)
|.|+|+|.....---..|+....+...||+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999998777778888888888887643
No 66
>PRK11325 scaffold protein; Provisional
Probab=25.36 E-value=1.6e+02 Score=23.13 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=38.3
Q ss_pred EEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q psy15384 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170 (260)
Q Consensus 121 ~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~la~~al~~ 170 (260)
.+|++|......|.+.|.....|-.-+-..+-.+.|++||..+..+.+..
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~ 95 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAE 95 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHH
Confidence 45557888899999999886666666666666789999999887765554
No 67
>PF02205 WH2: WH2 motif; InterPro: IPR003124 The WH2 (WASP-Homology 2, or Wiskott-Aldrich homology 2) domain is an ~18 amino acids actin-binding motif. This domain was first recognised as an essential element for the regulation of the cytoskeleton by the mammalian Wiskott-Aldrich syndrome protein (WASP) family. WH2 proteins occur in eukaryotes from yeast to mammals, in insect viruses, and in some bacteria. The WH2 domain is found as a modular part of larger proteins; it can be associated with the WH1 or EVH1 domain and with the CRIB domain, and the WH2 domain can occur as a tandem repeat. The WH2 domain binds actin monomers and can facilitate the assembly of actin monomers into newly forming actin filaments [, ]. ; GO: 0005515 protein binding; PDB: 2D1K_C 3M1F_V 2A41_C 2A3Z_C 2VCP_E 2A40_F 3P8C_D 3M3N_W.
Probab=24.86 E-value=29 Score=20.55 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=10.6
Q ss_pred CCCchhhhhhccc
Q psy15384 247 GDGPRSKMLKSIQ 259 (260)
Q Consensus 247 ~~~~~~~~~~~~~ 259 (260)
+.++|+.+|.+|+
T Consensus 1 ~~~~R~~LL~~Ir 13 (30)
T PF02205_consen 1 GGDGRSALLSQIR 13 (30)
T ss_dssp -STTHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 4678999999987
No 68
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=24.67 E-value=4.9e+02 Score=22.96 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=32.2
Q ss_pred EEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHH
Q psy15384 6 ICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63 (260)
Q Consensus 6 ivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l 63 (260)
.+.+.+-+...||.-..... ++ ..|.|..-|+|+|-+.|...-.-.|
T Consensus 45 a~s~~~g~~~~lAys~~~~~------~l-----~pR~F~~~DdIfCiF~G~L~Nl~~L 91 (228)
T PF12481_consen 45 AFSMNFGDSAALAYSHSNQS------SL-----HPRLFAGVDDIFCIFLGSLENLCSL 91 (228)
T ss_pred eEEEEcCCCEEEEEecCCCC------cc-----ccccccccCCEEEEEecchhhHHHH
Confidence 46677778888887432221 22 6788889899999999976544333
No 69
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=21.47 E-value=1.3e+02 Score=20.33 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Q psy15384 153 ENLSEKEGLTLMVDAIKAGILYD 175 (260)
Q Consensus 153 ~~ms~eeai~la~~al~~~~~~D 175 (260)
.+||.|+|.++.++.++-.+-+|
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999998877665
No 70
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=21.28 E-value=1.3e+02 Score=21.31 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=30.8
Q ss_pred cCChHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhc
Q psy15384 137 GTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYD 175 (260)
Q Consensus 137 Gsgs~~a~~~Le~~y~~~ms~eeai~la~~al~~~~~~D 175 (260)
|+....+..+|+.+|.-+.+.......+..+|+.++...
T Consensus 21 GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G 59 (77)
T PF00538_consen 21 GSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEKG 59 (77)
T ss_dssp SEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCC
Confidence 455678899999999766776667788899999888653
No 71
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=20.87 E-value=2.6e+02 Score=24.77 Aligned_cols=43 Identities=28% Similarity=0.077 Sum_probs=31.4
Q ss_pred ChHhHHHHHHHHHHhccCc-ceeeEEEEEEeCCCCceEEEEeec
Q psy15384 83 PVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSIFQH 125 (260)
Q Consensus 83 ~v~~l~~~l~~~l~~~~~p-~g~sliiaG~D~~g~p~Ly~idp~ 125 (260)
.+..++..+++.+-++.++ ++---|=.|+|.+|.++|+.+.+.
T Consensus 189 ~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWliEvN~k 232 (262)
T PF14398_consen 189 ELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWLIEVNSK 232 (262)
T ss_pred HHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEEEEEeCC
Confidence 3566777778877776555 665556677999998888888764
No 72
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=20.44 E-value=3.5e+02 Score=24.39 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=40.1
Q ss_pred EEEEcCChHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384 133 FCAMGTGLQPAMGILEAG----WKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191 (260)
Q Consensus 133 ~~aiGsgs~~a~~~Le~~----y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g 191 (260)
..++|.|..+++..+-.. .+.+|+++||.+.+++-+...+. ..+...-+..|+++|
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G 246 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKG 246 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCC
Confidence 568999998877765532 34689999999988877665432 234566777888888
No 73
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=20.42 E-value=1.4e+02 Score=23.05 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCC-CCChHhH
Q psy15384 60 MKRLSGLVEANLECQFPKAHT-DIPVICP 87 (260)
Q Consensus 60 ~~~l~~~~~~~~~~~~~~~~~-~i~v~~l 87 (260)
+..++++++.+++.|.+..++ +++.+.+
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 667899999999999999998 5555544
No 74
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=20.12 E-value=6e+02 Score=22.31 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=33.4
Q ss_pred EEEEEeCCEEEEEE-eCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHH
Q psy15384 6 ICGLLYEDGVILGA-DTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLV 67 (260)
Q Consensus 6 ivgi~~kdGVVlaa-D~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~ 67 (260)
.+.+.+-+...||. +... ..+ ..+++.-++.++|++-|..-....|.+.+
T Consensus 41 ~~~~~~~~~~~~a~~~~~~-------~~~-----~~rl~~~~~~~~~vfnGeIyN~~eLr~~l 91 (224)
T cd01910 41 AVFVHLGAAGFLAYSHHNQ-------SPL-----HPRLFAVKDDIFCLFQGHLDNLGSLKQQY 91 (224)
T ss_pred cEEEEcCCceEEEEecCCC-------Ccc-----cCcEECCCCCEEEEEEeEEcCHHHHHHHh
Confidence 45556666666675 2211 122 67888888999999999987776666543
Done!