Query psy15384
Match_columns 260
No_of_seqs 197 out of 1336
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:36:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3unf_H Proteasome subunit beta 100.0 2.1E-58 7.3E-63 404.5 26.0 229 4-239 1-229 (234)
2 3nzj_H Proteasome component PU 100.0 2.3E-56 7.8E-61 397.3 26.1 226 2-233 28-253 (261)
3 1iru_I 20S proteasome; cell cy 100.0 1.1E-55 3.7E-60 387.2 24.3 227 4-237 1-227 (234)
4 1ryp_I 20S proteasome; multica 100.0 6.4E-55 2.2E-59 379.3 25.8 221 4-230 1-221 (222)
5 3h4p_a Proteasome subunit beta 100.0 1.5E-49 5.1E-54 344.8 19.5 207 3-236 1-209 (219)
6 1iru_N 20S proteasome; cell cy 100.0 1.3E-48 4.4E-53 338.4 21.1 202 2-210 7-214 (219)
7 1ryp_N 20S proteasome; multica 100.0 2.4E-48 8.1E-53 339.9 22.4 207 2-214 7-228 (233)
8 1g0u_M Proteasome component PR 100.0 2E-47 6.9E-52 340.6 22.0 207 2-214 40-261 (266)
9 1j2q_H Proteasome beta subunit 100.0 2.5E-47 8.7E-52 326.3 21.6 192 4-202 1-194 (202)
10 1iru_L 20S proteasome; cell cy 100.0 4.3E-47 1.5E-51 325.3 22.9 192 4-202 1-193 (204)
11 1yar_H Proteasome beta subunit 100.0 2.6E-47 9E-52 330.1 21.5 194 2-203 7-202 (217)
12 1iru_H 20S proteasome; cell cy 100.0 3.9E-47 1.3E-51 325.8 22.3 198 4-206 1-199 (205)
13 1ryp_K 20S proteasome; multica 100.0 3.1E-47 1E-51 324.6 21.5 191 4-200 2-196 (198)
14 1ryp_L 20S proteasome; multica 100.0 5E-47 1.7E-51 326.9 22.4 195 4-204 1-196 (212)
15 3nzj_K Proteasome component PR 100.0 5.2E-47 1.8E-51 341.2 22.2 196 2-203 74-270 (287)
16 1iru_M 20S proteasome; cell cy 100.0 2E-46 6.9E-51 323.2 23.8 188 2-195 8-205 (213)
17 3unf_N Proteasome subunit beta 100.0 1.2E-46 3.9E-51 321.3 21.8 196 4-206 1-198 (199)
18 1ryp_H 20S proteasome; multica 100.0 1.9E-46 6.5E-51 321.7 21.7 187 2-195 8-194 (205)
19 1ryp_M 20S proteasome; multica 100.0 5.6E-46 1.9E-50 322.8 23.8 189 2-196 8-215 (222)
20 1iru_K 20S proteasome; cell cy 100.0 3.2E-46 1.1E-50 319.2 21.7 191 4-200 2-195 (201)
21 1iru_J 20S proteasome; cell cy 100.0 8.4E-46 2.9E-50 317.5 23.5 189 1-195 6-197 (205)
22 1yar_A Proteasome alpha subuni 100.0 4.5E-46 1.6E-50 325.4 20.7 193 2-202 33-230 (233)
23 1ryp_A 20S proteasome; multica 100.0 3.5E-46 1.2E-50 328.1 19.4 191 3-201 30-232 (243)
24 1iru_C 20S proteasome; cell cy 100.0 4.3E-46 1.5E-50 331.0 20.1 193 2-199 30-231 (261)
25 1ryp_J 20S proteasome; multica 100.0 2.8E-45 9.6E-50 314.0 23.7 188 1-195 6-196 (204)
26 1ryp_E 20S proteasome; multica 100.0 3.1E-46 1E-50 328.2 17.7 191 2-199 25-226 (242)
27 1iru_B 20S proteasome; cell cy 100.0 7.1E-46 2.4E-50 324.1 19.7 193 2-203 30-227 (233)
28 1ryp_C 20S proteasome; multica 100.0 2.8E-45 9.5E-50 322.4 21.3 195 2-201 30-234 (244)
29 1iru_D 20S proteasome; cell cy 100.0 1.7E-45 5.7E-50 324.9 18.4 192 2-202 28-226 (248)
30 1iru_A 20S proteasome; cell cy 100.0 4.6E-45 1.6E-49 321.5 21.0 193 2-201 35-235 (246)
31 1ryp_D 20S proteasome; multica 100.0 6.1E-45 2.1E-49 319.8 21.5 192 2-201 27-227 (241)
32 1iru_E 20S proteasome; cell cy 100.0 3.9E-45 1.3E-49 321.1 19.2 192 2-201 33-234 (241)
33 3h4p_A Proteasome subunit alph 100.0 3.3E-45 1.1E-49 326.0 18.1 194 2-204 37-236 (264)
34 1iru_G 20S proteasome; cell cy 100.0 4.4E-45 1.5E-49 323.3 18.0 194 2-201 32-232 (254)
35 1ryp_G 20S proteasome; multica 100.0 1.7E-44 5.8E-49 317.8 21.5 192 2-201 29-231 (244)
36 1ryp_F 20S proteasome; multica 100.0 1E-44 3.4E-49 317.0 19.6 191 2-202 30-230 (233)
37 1q5q_H Proteasome beta-type su 100.0 1.9E-44 6.4E-49 315.8 21.3 190 4-199 1-208 (235)
38 1j2p_A Alpha-ring, proteasome 100.0 3.4E-44 1.1E-48 316.1 21.6 191 2-201 33-229 (246)
39 1iru_F 20S proteasome; cell cy 100.0 2.5E-44 8.7E-49 320.1 19.8 192 2-202 31-230 (263)
40 1q5r_H Proteasome beta-type su 100.0 4.7E-44 1.6E-48 322.9 20.6 192 2-199 64-273 (294)
41 1ryp_B 20S proteasome; multica 100.0 1.8E-43 6E-48 312.2 21.3 183 2-191 30-218 (250)
42 3mi0_A Proteasome subunit alph 100.0 2.3E-43 7.7E-48 311.5 21.0 181 2-196 26-225 (248)
43 2jay_A Proteasome; hydrolase; 100.0 1.1E-43 3.9E-48 320.1 18.3 194 2-201 56-267 (291)
44 3nzj_F Proteasome component C1 100.0 2.4E-43 8.1E-48 317.5 20.0 181 2-189 33-221 (288)
45 1q5q_A Proteasome alpha-type s 100.0 7.3E-43 2.5E-47 310.1 18.9 187 2-202 26-229 (259)
46 2z3b_A ATP-dependent protease 100.0 8.4E-38 2.9E-42 263.3 19.8 168 1-187 3-179 (180)
47 1g3k_A ATP-dependent protease 100.0 4.4E-37 1.5E-41 257.3 21.3 166 4-188 1-173 (174)
48 1m4y_A ATP-dependent protease 100.0 5.9E-37 2E-41 255.8 20.6 165 4-187 1-171 (171)
49 3ub6_A Chemoreceptor TLPB; hom 29.1 82 0.0028 25.0 5.2 51 142-198 35-85 (181)
50 3fpw_A HBPS, extracellular HAE 26.6 1.4E+02 0.0048 24.4 6.2 37 152-192 62-98 (192)
51 2a2l_A Unknown; structural gen 23.6 1E+02 0.0035 23.8 4.6 37 153-193 10-46 (145)
52 2kwp_A Transcription elongatio 21.5 1.3E+02 0.0044 22.8 4.7 49 153-201 16-64 (129)
No 1
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=2.1e-58 Score=404.47 Aligned_cols=229 Identities=36% Similarity=0.619 Sum_probs=215.5
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |.++.+++++|||+|++||+||+||..||++.++++++.+++.|+++++++++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~-----g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATN-----DSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPR 75 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred CeEEEEEeCCEEEEEECCCccc-----CCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence 7999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL 163 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l 163 (260)
++.+++++++++++|++||++++||||||++| |+||++||+|++.+++|+|+|+|+.+|+++||+.|+++||++||+++
T Consensus 76 v~~la~~l~~~l~~~~~p~~v~llvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 3unf_H 76 VATVTRILRQTLFRYQGHVGASLVVGGVDLNG-PQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQEL 154 (234)
T ss_dssp HHHHHHHHHHHHHHTTTCSCEEEEEEEEETTE-EEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccEEEEEEEEeCCC-CEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHH
Confidence 99999999999999999999999999999866 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeeccccccccccc
Q psy15384 164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGKKR 239 (260)
Q Consensus 164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~~~ 239 (260)
+++||..++.+|..++++++|++|+++| +++++|+++++.|.+++..|+|++|||++|++.|.+++.|.++++.+
T Consensus 155 a~~al~~~~~~D~~sg~~iev~vi~~dg-~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (234)
T 3unf_H 155 LVEAITAGILSDLGSGGNVDACVITAGG-AKLQRALSTPTEPVQRAGRYRFAPGTTPVLTREVRPLTLELLEETVQ 229 (234)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEESSC-EEEEEEEECCCCCCCCCCCCCCCTTCSCEEEEEEEEC----------
T ss_pred HHHHHHHHHhhcCCCCCcEEEEEEECCC-EEEeCceecccccccccccccCCCCCcceeeEEEEEeeEEEEEeeee
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999988887765
No 2
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=2.3e-56 Score=397.30 Aligned_cols=226 Identities=38% Similarity=0.660 Sum_probs=217.7
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. |.++.+++++|||+|++||+||+||++||++.++++++.+++.|+++++++
T Consensus 28 ~GtTivgi~~kdGVVlAaD~r~t~-----g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 102 (261)
T 3nzj_H 28 TGTTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE 102 (261)
T ss_dssp --CCEEEEEETTEEEEEEECCEEE-----TTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cCceEEEEEECCEEEEEEcCCccc-----CCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 799999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384 82 IPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL 161 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai 161 (260)
+++..+++++++++++|++||++++||||||++| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||+|||+
T Consensus 103 ~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~ 181 (261)
T 3nzj_H 103 PRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI 181 (261)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTE-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCCC-CEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHH
Confidence 9999999999999999999999999999999876 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeeccccc
Q psy15384 162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKP 233 (260)
Q Consensus 162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~ 233 (260)
+++++||..++++|..++++++|++|+++|.+++++||..++.|.+++..|+||+|||+++++.|.+++...
T Consensus 182 ~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (261)
T 3nzj_H 182 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNICDIQ 253 (261)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSCCCCCTTCSCEEEEEEECCCC--
T ss_pred HHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcccccccccCCCCCCcceeeEEEEEeeeee
Confidence 999999999999999999999999999999899999999999999999999999999999999999996533
No 3
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.1e-55 Score=387.17 Aligned_cols=227 Identities=40% Similarity=0.698 Sum_probs=215.5
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.+. |.++.+++++|||+|++||+||+||..||++.++++++.+++.|+++++++++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~-----g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPR 75 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEES-----SSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred CeEEEEEeCCEEEEEEcCCccc-----CceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL 163 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l 163 (260)
++.+++++++++|+|++||++++||||||++| |+||++||+|++.+++++|+|+|+..|+++||+.|+++||++||+++
T Consensus 76 v~~la~~l~~~l~~~~~~~~v~llvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 1iru_I 76 VVTANRMLKQMLFRYRGYIGAALVLGGVDVTG-PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNL 154 (234)
T ss_dssp HHHHHHHHHHHHHHTTTCSCEEEEEEEECSSC-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTH
T ss_pred HHHHHHHHHHHHHhcCCCCceeEEEEEEcCCC-CEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999999999999866 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeeccccccccc
Q psy15384 164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGK 237 (260)
Q Consensus 164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~ 237 (260)
+++||..++.+|..++++++|++|+++| +++++|++.++.|.+++..|+||+|||++|++.|.++..+++++.
T Consensus 155 a~~al~~a~~~d~~sg~~i~v~vi~k~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (234)
T 1iru_I 155 VSEAIAAGIFNDLGSGSNIDLCVISKNK-LDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLEIEVLEET 227 (234)
T ss_dssp HHHHHHHHHHHCTTCCSCEEEEEEETTE-EECCSEEECCCCCCCCCSCCCCCTTCSCBSCCCCCBCC-------
T ss_pred HHHHHHHHHHhcccCCCCEEEEEEECCc-EEEEcceecCccccccccCcccCCCceeeeEEEEEecchhheecc
Confidence 9999999999999999999999999999 999999999999999999999999999999999999976665543
No 4
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=6.4e-55 Score=379.26 Aligned_cols=221 Identities=38% Similarity=0.664 Sum_probs=215.2
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |.++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~-----g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPR 75 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CeEEEEEECCEEEEEEcCCccc-----CCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL 163 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l 163 (260)
++.+++++++++++|++||++++||||+|++| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||+++
T Consensus 76 v~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (222)
T 1ryp_I 76 VVSALQMLKQHLFKYQGHIGAYLIVAGVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL 154 (222)
T ss_dssp HHHHHHHHHHHHHHTTTCSCEEEEEEEEETTE-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCC-CEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHH
Confidence 99999999999999999999999999999865 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeecc
Q psy15384 164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230 (260)
Q Consensus 164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~ 230 (260)
+++||..++++|..++++++|++|++++++++++|+.++++|.+++..|.||+|||+++++.|.+++
T Consensus 155 a~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (222)
T 1ryp_I 155 ASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNIC 221 (222)
T ss_dssp HHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSCCCCCTTCSCEEEEEECCCC
T ss_pred HHHHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCCcccccccCcccCCCceeeeeeeeEecc
Confidence 9999999999999999999999999988799999999999999999999999999999999998875
No 5
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.5e-49 Score=344.78 Aligned_cols=207 Identities=29% Similarity=0.468 Sum_probs=190.7
Q ss_pred cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI 82 (260)
Q Consensus 3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (260)
|||+|||+++||||||+|+|.++ |.++..++++||++|++||+|++||+.||++.++++++.+++.|++++++++
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~-----g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 75 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASL-----GNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNI 75 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEE-----TTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred CccEEEEEECCEEEEEEcCCccc-----CCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 89999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384 83 PVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEG 160 (260)
Q Consensus 83 ~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~ms~eea 160 (260)
++..+++++++++++++ +||++++||||||++++|+||++||+|++.+++ ++|+|+|+.+|+++||+.|+++||++||
T Consensus 76 ~v~~la~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea 155 (219)
T 3h4p_a 76 PPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEG 155 (219)
T ss_dssp CHHHHHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999875 599999999999985569999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeecccccccc
Q psy15384 161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEG 236 (260)
Q Consensus 161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~ 236 (260)
++++++||..++++|..++++++|++|+++| ++++ +.+++++++..++.++..+
T Consensus 156 ~~la~~al~~~~~rd~~sg~~i~v~vi~~~g-~~~l---------------------~~~ei~~~l~~~~~~~~~~ 209 (219)
T 3h4p_a 156 IKLALNALKSAMERDTFSGNGISLAVITKDG-VKIF---------------------EDEEIEKILDSMKAKPKKK 209 (219)
T ss_dssp HHHHHHHHHHHHTSCSSCCSCCCEEEEETTE-EEEC---------------------CHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-eEEc---------------------CHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999998 9998 5566677777776655443
No 6
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.3e-48 Score=338.38 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=194.0
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCC-CCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFP-KAHT 80 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~~~ 80 (260)
+|||+|||+++||||||+|+|.+. |.++.+++++||++|++||+|++||..||++.|+++++.+++.|++ ++++
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 7 TGTSVLGVKFEGGVVIAADMLGSY-----GSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp EECCCEEEEETTEEEEEEECCEEE-----TTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCceEEEEEeCCEEEEEECCcccc-----CcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 699999999999999999999999 9999999999999999999999999999999999999999999998 9999
Q ss_pred CCChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--CC
Q psy15384 81 DIPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--NL 155 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~m 155 (260)
+++++.+++++++++|.++ +||++++||||+|+. +|+||++||+|++.+++++|+|+|+.+|+++||+.|++ +|
T Consensus 82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~m 160 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL 160 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECC-CCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCC
Confidence 9999999999999988653 599999999999976 59999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccc
Q psy15384 156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCV 210 (260)
Q Consensus 156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~ 210 (260)
|++||++++++||..+.++|..++++++|++|+++| ++++++++++..|.+.+.
T Consensus 161 t~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-~~~~~~~~i~~~~~~~~~ 214 (219)
T 1iru_N 161 SQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-VEIEGPLSTETNWDIAHM 214 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEEECCCCCCGGGGC
T ss_pred CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-EEEcCCeeccchhhHHHh
Confidence 999999999999999999999999999999999999 999999999999997643
No 7
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2.4e-48 Score=339.95 Aligned_cols=207 Identities=20% Similarity=0.214 Sum_probs=197.8
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCC-----
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFP----- 76 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~----- 76 (260)
+|||+|||+++||||||+|+|.+. |.++.+++++||++|++||+|++||..||++.|+++++.+++.|++
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 7 TGTSVISMKYDNGVIIAADNLGSY-----GSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp EECCEEEEEETTEEEEEEECCEEE-----TTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred CCceEEEEEECCEEEEEEcCcccc-----CCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 699999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC
Q psy15384 77 KAHTDIPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE 153 (260)
Q Consensus 77 ~~~~~i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~ 153 (260)
+++++++++.+++++++++|.++ +||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|++
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 161 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR 161 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSS
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhcc
Confidence 89999999999999999988764 599999999999987569999999999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC-CcEEEccCccccCC-CCcccccccC
Q psy15384 154 -----NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN-GQVSSYKPYKVLSD-RMPKCVQCII 214 (260)
Q Consensus 154 -----~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~-g~~~~l~~~~~~~~-~~~~~~~~~~ 214 (260)
+||++||++++++||..++++|..++++++|++|+++ | ++++.+++++.. |.+......|
T Consensus 162 ~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-~~~~~~~~i~~~~w~~~~~~~~~ 228 (233)
T 1ryp_N 162 ESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENMKWDFAKDIKGY 228 (233)
T ss_dssp GGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCSCCCGGGGGCCSS
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-eEEcChHhcccccchhhhhccCc
Confidence 9999999999999999999999999999999999999 7 999999999999 9987655555
No 8
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2e-47 Score=340.57 Aligned_cols=207 Identities=20% Similarity=0.214 Sum_probs=197.7
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCC-----
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFP----- 76 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~----- 76 (260)
+|||+|||+++||||||+|+|.+. |.++.+++++||++|++||+||+||..||++.|+++++.+++.|++
T Consensus 40 ~GtT~vgi~~~dgVVlAaD~r~t~-----g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 114 (266)
T 1g0u_M 40 TGTSVISMKYDNGVIIAADNLGSY-----GSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 114 (266)
T ss_dssp EECCEEEEEETTEEEEEEECCEEE-----TTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cCceEEEEEECCEEEEEEcCCccc-----CceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchh
Confidence 699999999999999999999999 8999999999999999999999999999999999999999999998
Q ss_pred CCCCCCChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC
Q psy15384 77 KAHTDIPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE 153 (260)
Q Consensus 77 ~~~~~i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~ 153 (260)
+++++++++.+++++++++|.++ +||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|++
T Consensus 115 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 194 (266)
T 1g0u_M 115 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR 194 (266)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSS
T ss_pred hcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcc
Confidence 89999999999999999988764 599999999999987569999999999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC-CcEEEccCccccCC-CCcccccccC
Q psy15384 154 -----NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN-GQVSSYKPYKVLSD-RMPKCVQCII 214 (260)
Q Consensus 154 -----~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~-g~~~~l~~~~~~~~-~~~~~~~~~~ 214 (260)
+||++||++++++||..++++|..++++++|++|+++ | ++++.+++++.. |.+++....|
T Consensus 195 ~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g-~~~~~~~ei~~~~w~~~~~~~~~ 261 (266)
T 1g0u_M 195 ESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENMKWDFAKDIKGY 261 (266)
T ss_dssp GGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCCCCCGGGGGCCSS
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC-eEEcCHHHhhhhhhhHHhhhcCc
Confidence 9999999999999999999999999999999999999 7 999999999999 9987655555
No 9
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=2.5e-47 Score=326.26 Aligned_cols=192 Identities=28% Similarity=0.437 Sum_probs=184.1
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |+++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATM-----GNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPT 75 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEE-----TTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CcEEEEEeCCEEEEEECCCcCc-----CCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 7999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384 84 VICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGL 161 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~ms~eeai 161 (260)
++.+++++++++++++ +||++++||||||++| |+||++||+|++.+++ ++|+|+|+.+|+++||+.|+++||++||+
T Consensus 76 ~~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~~g-p~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 154 (202)
T 1j2q_H 76 VRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEG-KSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV 154 (202)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTE-EEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCC-CEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHH
Confidence 9999999999998875 5999999999999865 9999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384 162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL 202 (260)
Q Consensus 162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~ 202 (260)
+++++||..++++|..++++++|++|+++| ++.+.+.+++
T Consensus 155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~l~~~ei~ 194 (202)
T 1j2q_H 155 ELAVRAIYSAMKRDSASGDGIDVVKITEDE-FYQYSPEEVE 194 (202)
T ss_dssp HHHHHHHHHHHTTCTTSCSCEEEEEECSSC-EEECHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-eEEeCHHHHH
Confidence 999999999999999899999999999998 9998666553
No 10
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=4.3e-47 Score=325.32 Aligned_cols=192 Identities=23% Similarity=0.335 Sum_probs=183.9
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |+++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATA-----GAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERIS 75 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CeEEEEEeCCEEEEEEcCCccc-----CCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 7999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT 162 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~ 162 (260)
++.+++++++++++++. ||++++||||||++| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||++
T Consensus 76 v~~la~~l~~~~~~~r~~~~~v~~lvaG~D~~g-p~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~ 154 (204)
T 1iru_L 76 VAAASKLLANMVYQYKGMGLSMGTMICGWDKRG-PGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYD 154 (204)
T ss_dssp HHHHHHHHHHHHHTTTTSCCCBEEEEEEECSSS-EEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCeeEEEEEEEEeCCC-CEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHH
Confidence 99999999999998865 899999999999865 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384 163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL 202 (260)
Q Consensus 163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~ 202 (260)
++++||..++++|..++++++|++|+++| ++.+.+.+++
T Consensus 155 l~~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~l~~~ei~ 193 (204)
T 1iru_L 155 LARRAIYQATYRDAYSGGAVNLYHVREDG-WIRVSSDNVA 193 (204)
T ss_dssp HHHHHHHHHHHHBTTCCSEEEEEEECSSC-EEEEEEEEHH
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEeCCc-eEEeCHHHHH
Confidence 99999999999999899999999999998 9988555543
No 11
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=2.6e-47 Score=330.13 Aligned_cols=194 Identities=27% Similarity=0.434 Sum_probs=184.2
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.++ |+++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 7 TGTTTVGITLKDAVIMATERRVTM-----ENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp --CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCccEEEEEeCCEEEEEEcCCCCC-----CCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 799999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384 82 IPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG 160 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea 160 (260)
++++.+++++++++++++ +||++++|||||| +| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||
T Consensus 82 ~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 159 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TA-PHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEG 159 (217)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SS-EEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CC-CEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHH
Confidence 999999999999999875 5999999999999 65 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEc-CCcEEEccCccccC
Q psy15384 161 LTLMVDAIKAGILYDLGSGSKVDVTIIRK-NGQVSSYKPYKVLS 203 (260)
Q Consensus 161 i~la~~al~~~~~~D~~sg~~iev~vit~-~g~~~~l~~~~~~~ 203 (260)
++++++||..++++|..++++++|++|++ +| ++.+.+.+++.
T Consensus 160 ~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g-~~~~~~~ei~~ 202 (217)
T 1yar_H 160 VDLVIRAISAAKQRDSASGGMIDVAVITRKDG-YVQLPTDQIES 202 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCCEEEEEETTTE-EEECCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEEEEECCCC-EEEcCHHHHHH
Confidence 99999999999999998999999999999 66 99887766644
No 12
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=3.9e-47 Score=325.81 Aligned_cols=198 Identities=26% Similarity=0.435 Sum_probs=187.4
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |.++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTT-----GSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPL 75 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CcEEEEEeCCEEEEEEcCCccc-----CcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL 163 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l 163 (260)
++.+++++++++++|+.||++++||||||++++|+||++||+|++.+++++++|+|+.+|+++||+.|+++||++||+++
T Consensus 76 v~~la~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 76 VHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999988999999999999855699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEEcCCc-EEEccCccccCCCC
Q psy15384 164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQ-VSSYKPYKVLSDRM 206 (260)
Q Consensus 164 a~~al~~~~~~D~~sg~~iev~vit~~g~-~~~l~~~~~~~~~~ 206 (260)
+++||..++++|..++++++|++|+++|. ++++.+.+++..+.
T Consensus 156 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 156 TANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAV 199 (205)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHh
Confidence 99999999999998999999999999983 45677776655444
No 13
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.1e-47 Score=324.64 Aligned_cols=191 Identities=20% Similarity=0.258 Sum_probs=183.5
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.+. |.++.+++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 76 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTR-----GISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELS 76 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEE-----TTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred ceEEEEEECCEEEEEECCCccc-----CCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7999999999999999999999 88998899999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhcc---CcceeeEEEEEEeC-CCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHH
Q psy15384 84 VICPVTMIKQTLYKYH---GYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKE 159 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~ee 159 (260)
++.+++++++++++++ +||++++||||||+ +++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++|
T Consensus 77 v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee 156 (198)
T 1ryp_K 77 PQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEE 156 (198)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHH
Confidence 9999999999998874 49999999999997 4569999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcc
Q psy15384 160 GLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYK 200 (260)
Q Consensus 160 ai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~ 200 (260)
|++++++||..+.++|..++++++|++|+++| ++.++|++
T Consensus 157 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~~~ 196 (198)
T 1ryp_K 157 GLDLLKLCVQELEKRMPMDFKGVIVKIVDKDG-IRQVDDFQ 196 (198)
T ss_dssp HHHHHHHHHHHHHHHCSBCCCCEEEEEEETTE-EEEECCCS
T ss_pred HHHHHHHHHHHHHHhCccCCCceEEEEEcCCC-EEEecccc
Confidence 99999999999999999999999999999998 99998865
No 14
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=5e-47 Score=326.89 Aligned_cols=195 Identities=21% Similarity=0.291 Sum_probs=186.5
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |+++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATA-----GNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS 75 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CcEEEEEeCCEEEEEEcCCccc-----CCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT 162 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~ 162 (260)
++.+++++++++++|+. ||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||++
T Consensus 76 v~~la~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~ 155 (212)
T 1ryp_L 76 VAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALY 155 (212)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHH
Confidence 99999999999998865 89999999999965569999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCC
Q psy15384 163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204 (260)
Q Consensus 163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~ 204 (260)
++++||..++++|..++++++|++|+++| ++++.+.+++..
T Consensus 156 la~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~~~~~ei~~~ 196 (212)
T 1ryp_L 156 LGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGEL 196 (212)
T ss_dssp HHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEEEcCCc-eEEECHHHHHHH
Confidence 99999999999999999999999999998 999977766544
No 15
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=5.2e-47 Score=341.15 Aligned_cols=196 Identities=22% Similarity=0.308 Sum_probs=187.7
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|++. |.++..++++||++|++||+||+||.+||++.+.++++.+++.|+++++++
T Consensus 74 ~GtT~vgik~~dGVVlAaD~r~t~-----G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~ 148 (287)
T 3nzj_K 74 HGTTTLAFRFQGGIIVAVDSRATA-----GNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKER 148 (287)
T ss_dssp --CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCceEEEEEECCEEEEEEcccccc-----CceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 799999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384 82 IPVICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG 160 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea 160 (260)
++++.+++++++++|+|+. ||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||
T Consensus 149 isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEA 228 (287)
T 3nzj_K 149 ISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDA 228 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHH
Confidence 9999999999999998865 899999999999666699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccC
Q psy15384 161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLS 203 (260)
Q Consensus 161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~ 203 (260)
++++++||..+++||..++++++|++|+++| ++++.+++++.
T Consensus 229 i~la~~aL~~a~~rD~~sg~~i~V~vItkdg-~~~l~~~ev~~ 270 (287)
T 3nzj_K 229 LYLGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGE 270 (287)
T ss_dssp HHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHH
T ss_pred HHHHHHHHHHHHhhCcCCCCceEEEEEeCCC-EEEeCHHHHHH
Confidence 9999999999999999999999999999999 99998887754
No 16
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2e-46 Score=323.17 Aligned_cols=188 Identities=23% Similarity=0.279 Sum_probs=180.7
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. |.++.+++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 82 (213)
T 1iru_M 8 NGGTILAIAGEDFAIVASDTRLSE-----GFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKA 82 (213)
T ss_dssp CCCEEEEEEETTEEEEEEECCEEE-----TTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCcEEEEEeCCEEEEEECCCccc-----CCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 799999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc---------c
Q psy15384 82 IPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG---------W 151 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~---------y 151 (260)
++++.++++|++++|.++ +||++++||||||++|+|+||++||+|++.+++++|+|+|+.+|+++||+. |
T Consensus 83 ~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~ 162 (213)
T 1iru_M 83 MTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVE 162 (213)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCC
T ss_pred CCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccC
Confidence 999999999999987654 699999999999987779999999999999999999999999999999999 8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384 152 KENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS 195 (260)
Q Consensus 152 ~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~ 195 (260)
+++||++||++++++||..++++|..++.+++|++|+++| ++.
T Consensus 163 ~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~ 205 (213)
T 1iru_M 163 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IRE 205 (213)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC-eEE
Confidence 8999999999999999999999999999999999999998 654
No 17
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.2e-46 Score=321.32 Aligned_cols=196 Identities=23% Similarity=0.378 Sum_probs=185.7
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |.++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSA-----GTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPL 75 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CeEEEEEeCCeEEEEECCcccC-----CceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384 84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLT 162 (260)
Q Consensus 84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~ms~eeai~ 162 (260)
++.++++++++++++++||++++||||||++++|+||+ |+|++.++. ++++|+|+.+|+++||+.|+++||++||++
T Consensus 76 v~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~ 153 (199)
T 3unf_N 76 VLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRR 153 (199)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 99999999999999999999999999999866699999 999986655 666799999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEcCC-cEEEccCccccCCCC
Q psy15384 163 LMVDAIKAGILYDLGSGSKVDVTIIRKNG-QVSSYKPYKVLSDRM 206 (260)
Q Consensus 163 la~~al~~~~~~D~~sg~~iev~vit~~g-~~~~l~~~~~~~~~~ 206 (260)
++++||..++++|..++++++|++|+++| .++++.+.+++..|.
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 154 FTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 99999999999999999999999999998 467798888887775
No 18
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.9e-46 Score=321.71 Aligned_cols=187 Identities=27% Similarity=0.506 Sum_probs=180.4
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. |.++..++++||++|++||+|++||..||++.++++++.+++.|++++++
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 8 LGASIMAVTFKDGVILGADSRTTT-----GAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp CCCCEEEEEETTEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCceEEEEEeCCEEEEEEcCCccc-----CcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 799999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384 82 IPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL 161 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai 161 (260)
++++.+++++++++++++..|++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||+
T Consensus 82 ~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 161 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV 161 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHH
Confidence 99999999999999998777999999999997556999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384 162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS 195 (260)
Q Consensus 162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~ 195 (260)
+++++||..++++|..++++++|++|+++| ++.
T Consensus 162 ~l~~~al~~a~~~d~~sg~~i~v~vi~~~g-~~~ 194 (205)
T 1ryp_H 162 DFIKHSLSQAIKWDGSSGGVIRMVVLTAAG-VER 194 (205)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEE
T ss_pred HHHHHHHHHHHHhCCccCCeEEEEEEcCCC-EEE
Confidence 999999999999999999999999999998 553
No 19
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=5.6e-46 Score=322.84 Aligned_cols=189 Identities=22% Similarity=0.252 Sum_probs=181.5
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC-C
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAH-T 80 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~ 80 (260)
+|||+|||+++||||||+|+|.+. |.++.+++++|||+|++||+|++||..||++.|+++++.+++.|+++++ +
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 82 (222)
T 1ryp_M 8 NGGTILGIAGEDFAVLAGDTRNIT-----DYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDK 82 (222)
T ss_dssp CCCEEEEEECSSCEEEEEECCEEE-----TTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCccEEEEEeCCEEEEEEeccccc-----CCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 799999999999999999999999 8999999999999999999999999999999999999999999999999 9
Q ss_pred CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc---------
Q psy15384 81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG--------- 150 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~--------- 150 (260)
+++++.+++++++++|.++ +||++++||||||++|+|+||++||+|++.+++++|+|+|+.+|+++||+.
T Consensus 83 ~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~ 162 (222)
T 1ryp_M 83 KLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEP 162 (222)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccccc
Confidence 9999999999999998764 599999999999988789999999999999999999999999999999998
Q ss_pred --------cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384 151 --------WKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY 196 (260)
Q Consensus 151 --------y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l 196 (260)
|+++||+|||++++++||..++++|..++++++|++|+++| ++..
T Consensus 163 ~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~~ 215 (222)
T 1ryp_M 163 GTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG-VRKE 215 (222)
T ss_dssp TSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEE
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCC-eEEE
Confidence 88999999999999999999999999999999999999998 6543
No 20
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=3.2e-46 Score=319.20 Aligned_cols=191 Identities=17% Similarity=0.236 Sum_probs=181.0
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.+. |+++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 76 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAAS-----NIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELS 76 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEE-----TTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ceEEEEEeCCEEEEEEcCcccc-----CcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHH-Hh-c-cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384 84 VICPVTMIKQTL-YK-Y-HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG 160 (260)
Q Consensus 84 v~~l~~~l~~~l-~~-~-~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea 160 (260)
++.+++++++.+ ++ + ++||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||
T Consensus 77 v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 156 (201)
T 1iru_K 77 PTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERA 156 (201)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHH
Confidence 999999998765 43 2 35999999999999855699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcc
Q psy15384 161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYK 200 (260)
Q Consensus 161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~ 200 (260)
++++++||..+.++|..++.+++|++|+++| ++.++++.
T Consensus 157 ~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~~~~~~ 195 (201)
T 1iru_K 157 VELLRKCLEELQKRFILNLPTFSVRIIDKNG-IHDLDNIS 195 (201)
T ss_dssp HHHHHHHHHHHHHTBCBCCCCEEEEEEETTE-EECCCCBC
T ss_pred HHHHHHHHHHHHhhccccCCceEEEEEcCCC-eEEeeccc
Confidence 9999999999999999999999999999999 99887653
No 21
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=8.4e-46 Score=317.52 Aligned_cols=189 Identities=22% Similarity=0.292 Sum_probs=178.7
Q ss_pred CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT 80 (260)
Q Consensus 1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (260)
.+|||+|||+++||||||+|+|.+. |.++.+++++||++|++||+|++||..||++.++++++.+++.|++++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 6 YNGGAVMAMKGKNCVAIAADRRFGI-----QAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEE-----TTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCeEEEEEeCCEEEEEECCcccc-----CCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3799999999999999999999999 88998889999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeC-CCCceEEEEeecceEEee-CEEEEcCChHHHHHHHHhccCCCCCH
Q psy15384 81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKENLSE 157 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~-~~~aiGsgs~~a~~~Le~~y~~~ms~ 157 (260)
+++++.+++++++++|.++ +||++++||||||+ +++|+||++||+|++.++ +|+|+|+|+.+|+++||+.|+++||+
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 9999999999999988654 59999999999996 456999999999999766 67999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384 158 KEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS 195 (260)
Q Consensus 158 eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~ 195 (260)
+||++++++||..++++|..++.+++|++|+++| ++.
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~ 197 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK-ITT 197 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB-EEE
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC-EEE
Confidence 9999999999999999999999999999999998 553
No 22
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=4.5e-46 Score=325.35 Aligned_cols=193 Identities=22% Similarity=0.329 Sum_probs=181.8
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.++ + ++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 33 ~Gtt~vgi~~~dgVvlaaD~r~~~-----~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 106 (233)
T 1yar_A 33 KGSTALGMKFANGVLLISDKKVRS-----R-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSL 106 (233)
T ss_dssp TSCCEEEEEETTEEEEEECCCCCC-----T-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCcEEEEEECCEEEEEEeccCCc-----c-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999998 5 6788899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.+++++++++++++ +||++++||||||++| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus 107 ~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~g-p~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s 185 (233)
T 1yar_A 107 VNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLP 185 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSC-EEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCC-CEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCC
Confidence 999999999999998653 4999999999999855 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL 202 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~ 202 (260)
++||++++++||..++++|. ++++++|++|+++++++++.+.+++
T Consensus 186 ~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ei~ 230 (233)
T 1yar_A 186 EKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVK 230 (233)
T ss_dssp HHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHHHHH
Confidence 99999999999999999998 6999999999999868887666553
No 23
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=3.5e-46 Score=328.11 Aligned_cols=191 Identities=15% Similarity=0.071 Sum_probs=180.1
Q ss_pred cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI 82 (260)
Q Consensus 3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (260)
|+|+|||+++||||||+|+|.+. .++..++++|||+|++||+|++||+.||++.++++++.+++.|++++++++
T Consensus 30 Gtt~vgi~~~dgVvlaad~r~~~------~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~ 103 (243)
T 1ryp_A 30 NINSLAVRGKDCTVVISQKKVPD------KLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDM 103 (243)
T ss_dssp CCCEEEEECSSEEEEEEECCCCC------TTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCcEEEEEeCCEEEEEEEecCCc------cccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999985 788899999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHH--h-c--cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC----
Q psy15384 83 PVICPVTMIKQTLY--K-Y--HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE---- 153 (260)
Q Consensus 83 ~v~~l~~~l~~~l~--~-~--~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~---- 153 (260)
+++.++++|+++++ . + .+||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||+.|++
T Consensus 104 ~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~ 183 (243)
T 1ryp_A 104 PCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKID 183 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccc
Confidence 99999999999983 3 3 3599999999999975569999999999999999999999999999999999999
Q ss_pred ---CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384 154 ---NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201 (260)
Q Consensus 154 ---~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~ 201 (260)
+||++||++++++||..++++| .++.+++|++|+++| ++++.+.++
T Consensus 184 ~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g-~~~l~~~ei 232 (243)
T 1ryp_A 184 HINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK-FFTLSAENI 232 (243)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE-EEECCHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC-eEECCHHHH
Confidence 9999999999999999999999 679999999999999 999865554
No 24
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4.3e-46 Score=331.03 Aligned_cols=193 Identities=22% Similarity=0.282 Sum_probs=181.8
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. |.++.+++++||++|++||+|++||..||++.|+++++.+++.|+++++++
T Consensus 30 ~Gtt~vgi~~~dgVVlaaD~r~~~-----g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 104 (261)
T 1iru_C 30 HAGTCLGILANDGVLLAAERRNIH-----KLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEP 104 (261)
T ss_dssp TSCCEEEEBCSSEEEEEECCCCCC-----TTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCcEEEEEeCCEEEEEEecccCC-----cccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 799999999999999999999999 888888889999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC-CC
Q psy15384 82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NL 155 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~-~m 155 (260)
++++.+++++++++++|+ +||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|++ +|
T Consensus 105 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~m 184 (261)
T 1iru_C 105 IPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEM 184 (261)
T ss_dssp CCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCC
Confidence 999999999999998763 499999999999975569999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc---EEEccCc
Q psy15384 156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ---VSSYKPY 199 (260)
Q Consensus 156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~---~~~l~~~ 199 (260)
|++||++++++||..++.+|..++++++|++|+++++ ++++.+.
T Consensus 185 s~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ 231 (261)
T 1iru_C 185 TLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQK 231 (261)
T ss_dssp CHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHH
Confidence 9999999999999999999999999999999999873 5666333
No 25
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.8e-45 Score=314.03 Aligned_cols=188 Identities=20% Similarity=0.251 Sum_probs=177.8
Q ss_pred CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT 80 (260)
Q Consensus 1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (260)
.+|||+|||+++||||||+|+|.+. |.++.+++++||++|+ ||+|++||..||++.++++++.+++.|++++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 79 (204)
T 1ryp_J 6 INGGIVVAMTGKDCVAIACDLRLGS-----QSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEER 79 (204)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEE-----TTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCeEEEEEeCCEEEEEEcCCccc-----CCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3799999999999999999999999 8898888999999999 999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeC-CCCceEEEEeecceEEee-CEEEEcCChHHHHHHHHhccCCCCCH
Q psy15384 81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKENLSE 157 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~-~~~aiGsgs~~a~~~Le~~y~~~ms~ 157 (260)
+++++.+++++++++|.++ +||++++||||||+ +++|+||++||+|++.++ +|+|+|+|+.+|+++||+.|+++||+
T Consensus 80 ~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 159 (204)
T 1ryp_J 80 AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP 159 (204)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCH
Confidence 9999999999999987654 59999999999996 456999999999999766 67999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384 158 KEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS 195 (260)
Q Consensus 158 eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~ 195 (260)
+||++++++||..+.++|..++++++|++|+++| ++.
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~ 196 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDE-VVK 196 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC-EEE
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC-EEE
Confidence 9999999999999999999899999999999999 553
No 26
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=3.1e-46 Score=328.15 Aligned_cols=191 Identities=23% Similarity=0.284 Sum_probs=178.4
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. |.++ .++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 25 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 98 (242)
T 1ryp_E 25 LGSTAIGIATKEGVVLGVEKRATS-----PLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDED 98 (242)
T ss_dssp TSCCEEEEECSSCEEEEEECCCSS-----TTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCEEEEEECCEEEEEEeecCCC-----cCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999999 7666 8899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----------cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc
Q psy15384 82 IPVICPVTMIKQTLYKY-----------HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG 150 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----------~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~ 150 (260)
++++.++++++++++.| .+||++++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.
T Consensus 99 ~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 178 (242)
T 1ryp_E 99 INVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNE 178 (242)
T ss_dssp CCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHh
Confidence 99999999999988764 5599999999999955569999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCc
Q psy15384 151 WKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPY 199 (260)
Q Consensus 151 y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~ 199 (260)
|+++||++||++++++||..++.+ ..++.+++|++|++++.++++.+.
T Consensus 179 ~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~ 226 (242)
T 1ryp_E 179 WHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNE 226 (242)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCHH
T ss_pred hccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCHH
Confidence 999999999999999999999998 557999999999999855666433
No 27
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=7.1e-46 Score=324.12 Aligned_cols=193 Identities=17% Similarity=0.251 Sum_probs=182.5
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. .++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 30 ~Gtt~vgi~~~dgVvlaaD~r~~~------~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 103 (233)
T 1iru_B 30 GGAPSVGIKAANGVVLATEKKQKS------ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEP 103 (233)
T ss_dssp TSCCEEEEECSSCEEEEEECCCCC------SSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCcEEEEEeCCEEEEEEEecCCc------cccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999985 78889999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.+++++++++++|. +||++++||||||.+| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus 104 ~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~g-p~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms 182 (233)
T 1iru_B 104 IPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE 182 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSS-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCC-CeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCC
Confidence 999999999999997652 4999999999999655 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccC
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLS 203 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~ 203 (260)
++||++++++||..++++| .++++++|++|+++| ++++.+.+++.
T Consensus 183 ~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g-~~~l~~~ei~~ 227 (233)
T 1iru_B 183 LEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAG-FRRLTPTEVKD 227 (233)
T ss_dssp HHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTE-EEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCC-EEECCHHHHHH
Confidence 9999999999999999999 579999999999999 99997776643
No 28
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=2.8e-45 Score=322.44 Aligned_cols=195 Identities=22% Similarity=0.333 Sum_probs=179.9
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.++ |.++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 30 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 104 (244)
T 1ryp_C 30 HAGTAIGIMASDGIVLAAERKVTS-----TLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNED 104 (244)
T ss_dssp TSCCEEEEEETTEEEEEEECSSCC-----SSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCcEEEEEeCCEEEEEEeeccCC-----cCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 799999999999999999999999 766668899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.+++++++++++| .+||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus 105 ~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 184 (244)
T 1ryp_C 105 IPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMK 184 (244)
T ss_dssp CCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCC
Confidence 99999999999998654 2499999999999954569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEE--cCCc---EEEccCccc
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIR--KNGQ---VSSYKPYKV 201 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit--~~g~---~~~l~~~~~ 201 (260)
++||++++++||..++++|..++.+++|++|+ +++. ++++++.++
T Consensus 185 ~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei 234 (244)
T 1ryp_C 185 VDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEI 234 (244)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHH
Confidence 99999999999999999955579999999999 8874 666644433
No 29
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.7e-45 Score=324.88 Aligned_cols=192 Identities=18% Similarity=0.307 Sum_probs=178.7
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. | ++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 28 ~Gtt~vgi~~~dgVvlaaD~r~~~-----~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 101 (248)
T 1iru_D 28 KGSTAVGVRGRDIVVLGVEKKSVA-----K-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDP 101 (248)
T ss_dssp TSCCEEEECCSSEEEEEECCCCCC-----S-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred cCCCEEEEEeCCEEEEEEeecccc-----c-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999999 5 6788899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCC-
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENL- 155 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~m- 155 (260)
+++..++++++++++.| .+||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||+.|+++|
T Consensus 102 ~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~ 181 (248)
T 1iru_D 102 VTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181 (248)
T ss_dssp CCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTT
T ss_pred CCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhccccc
Confidence 99999999999999765 259999999999995556999999999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384 156 -SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL 202 (260)
Q Consensus 156 -s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~ 202 (260)
|++||++++++||..+++ .++++++|++|+++|+++++.+.+++
T Consensus 182 ~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei~ 226 (248)
T 1iru_D 182 ETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEIE 226 (248)
T ss_dssp CSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHHH
Confidence 999999999999999886 36899999999999868877555543
No 30
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=4.6e-45 Score=321.51 Aligned_cols=193 Identities=18% Similarity=0.198 Sum_probs=178.9
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. .++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 35 ~Gtt~vgi~~~dgVvlaaD~r~~~------~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 108 (246)
T 1iru_A 35 GGLTSVAVRGKDCAVIVTQKKVPD------KLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYE 108 (246)
T ss_dssp TCCEEEEEECSSEEEEEEECCCCC------SSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEEEEeCCEEEEEEeecCCC------cccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 399999999999999999999985 78899999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHH---hc--cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--C
Q psy15384 82 IPVICPVTMIKQTLY---KY--HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--N 154 (260)
Q Consensus 82 i~v~~l~~~l~~~l~---~~--~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~ 154 (260)
++++.++++++++++ ++ .+||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|++ +
T Consensus 109 ~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ 188 (246)
T 1iru_A 109 IPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCC
Confidence 999999999998853 33 3599999999999975569999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc-EEEccCccc
Q psy15384 155 LSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ-VSSYKPYKV 201 (260)
Q Consensus 155 ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~-~~~l~~~~~ 201 (260)
||++||++++++||..++++| .++.+++|++|+++|. ++++.+.++
T Consensus 189 ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei 235 (246)
T 1iru_A 189 WTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEI 235 (246)
T ss_dssp CCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHH
Confidence 999999999999999999999 7899999999999983 566644443
No 31
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=6.1e-45 Score=319.84 Aligned_cols=192 Identities=15% Similarity=0.227 Sum_probs=179.6
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. |.++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 27 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 101 (241)
T 1ryp_D 27 RGTCAVGVKGKNCVVLGCERRSTL-----KLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDP 101 (241)
T ss_dssp TSCCEEEEECSSCEEEEEECCCSS-----CCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCEEEEEeCCEEEEEEeeccCc-----cCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999999 788777799999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCC-CCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhcc---C
Q psy15384 82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSA-GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW---K 152 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~-g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y---~ 152 (260)
++++.+++++++++++++ +||++++||||||++ ++|+||++||+|++.+++++|+|+|+.+|+++||+.| +
T Consensus 102 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~ 181 (241)
T 1ryp_D 102 VTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 181 (241)
T ss_dssp CCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTS
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhccc
Confidence 999999999999998652 499999999999974 5699999999999999999999999999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384 153 ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201 (260)
Q Consensus 153 ~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~ 201 (260)
++||++||++++++||..+++ .++++++|++|+++++++++.+.++
T Consensus 182 ~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei 227 (241)
T 1ryp_D 182 PPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEI 227 (241)
T ss_dssp CCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHH
Confidence 999999999999999999985 5799999999999876888855544
No 32
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=3.9e-45 Score=321.06 Aligned_cols=192 Identities=18% Similarity=0.260 Sum_probs=178.9
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. |.++ .++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 33 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 106 (241)
T 1iru_E 33 LGSTAIGIQTSEGVCLAVEKRITS-----PLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNET 106 (241)
T ss_dssp TSCCEEEEEETTEEEEEEECCCCC-----TTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCcEEEEEcCCEEEEEEecccCC-----cCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999999999999999 7766 8899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc----------cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhcc
Q psy15384 82 IPVICPVTMIKQTLYKY----------HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW 151 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~----------~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y 151 (260)
++++.++++++++++.| .+||++++||||||. ++|+||++||+|++.+++++|+|+|+.+|+++||+.|
T Consensus 107 ~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 185 (241)
T 1iru_E 107 MTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELY 185 (241)
T ss_dssp CCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHh
Confidence 99999999999988654 359999999999995 4599999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384 152 KENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201 (260)
Q Consensus 152 ~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~ 201 (260)
+++||++||++++++||..+.++ ..++.+++|++|++++.++++.+.++
T Consensus 186 ~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ei 234 (241)
T 1iru_E 186 HKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKEEL 234 (241)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHHHH
Confidence 99999999999999999999999 56799999999999985666654443
No 33
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.3e-45 Score=326.01 Aligned_cols=194 Identities=23% Similarity=0.289 Sum_probs=181.6
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. + ++..++++||++|++||+||+||+.||++.|+++++.+++.|++.++++
T Consensus 37 ~Gtt~vgi~~~dgVVlaaD~r~~~-----~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~ 110 (264)
T 3h4p_A 37 RGTTAIGIACKDGVVLAVDRRITS-----K-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEE 110 (264)
T ss_dssp HSCCEEEECCSSEEEEEEECCCCS-----T-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSC
T ss_pred cCCcEEEEEECCEEEEEEecCccC-----C-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCC
Confidence 699999999999999999999998 5 7788999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
+++..++++|+++++.|. +||++++||||||++| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus 111 i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~g-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 189 (264)
T 3h4p_A 111 ISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNE-ARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDIT 189 (264)
T ss_dssp CCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTE-EEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCc-CEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCC
Confidence 999999999999987652 4999999999999765 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC-cEEEccCccccCC
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG-QVSSYKPYKVLSD 204 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g-~~~~l~~~~~~~~ 204 (260)
++||++++++||..++.+ .++++++|++|++++ +++++.+.+++..
T Consensus 190 ~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~~ 236 (264)
T 3h4p_A 190 LDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKKL 236 (264)
T ss_dssp SHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGGG
T ss_pred HHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHHH
Confidence 999999999999999977 589999999999864 5999988877654
No 34
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=4.4e-45 Score=323.34 Aligned_cols=194 Identities=16% Similarity=0.188 Sum_probs=179.8
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. |.++ .++++||++|++||+||+||..||++.++++++.+++.|+++++++
T Consensus 32 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 105 (254)
T 1iru_G 32 NSSTAIGIRCKDGVVFGVEKLVLS-----KLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYN 105 (254)
T ss_dssp TSCCEEEEECSSBEEEEEEEECSC-----TTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCEEEEEECCEEEEEEecccCC-----CCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999999999999999 7776 4789999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.++++++++++.|+ +||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus 106 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 185 (254)
T 1iru_G 106 IPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMT 185 (254)
T ss_dssp CCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCC
T ss_pred CCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCC
Confidence 999999999999998763 599999999999955569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC--CcEEEccCccc
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN--GQVSSYKPYKV 201 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~--g~~~~l~~~~~ 201 (260)
++||++++++||+.++.+|..++.+++|++|+++ |+++++.+.++
T Consensus 186 ~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i 232 (254)
T 1iru_G 186 CRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIR 232 (254)
T ss_dssp HHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHH
Confidence 9999999999999998888777889999999987 44777744443
No 35
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.7e-44 Score=317.84 Aligned_cols=192 Identities=22% Similarity=0.246 Sum_probs=178.8
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.++ |.++.++ .+||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 29 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 102 (244)
T 1ryp_G 29 NGTTSIGIKCNDGVVFAVEKLITS-----KLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTP 102 (244)
T ss_dssp TSCCEEEEEETTEEEEEEEEECCC-----TTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEEEEECCEEEEEEecccCC-----CCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999999999999999 7776554 5999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc---cCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG---WKE 153 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~---y~~ 153 (260)
+++..++++++++++.| .+||++++||||||++| |+||++||+|++.+++++|+|+|+.+|+++||+. |++
T Consensus 103 ~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~g-p~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ 181 (244)
T 1ryp_G 103 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPE 181 (244)
T ss_dssp CCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTE-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCc-CEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCC
Confidence 99999999999998654 36999999999999755 9999999999999999999999999999999997 999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEc---CCcEEEccCccc
Q psy15384 154 NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRK---NGQVSSYKPYKV 201 (260)
Q Consensus 154 ~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~---~g~~~~l~~~~~ 201 (260)
+||++||++++++||..++++|..++.+++|++|++ +| ++.+.|.++
T Consensus 182 ~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g-~~~~~~~~~ 231 (244)
T 1ryp_G 182 GLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGDL 231 (244)
T ss_dssp CCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT-SEEECCTHH
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC-eeeeChHHH
Confidence 999999999999999999999998899999999998 67 777666544
No 36
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1e-44 Score=316.96 Aligned_cols=191 Identities=20% Similarity=0.166 Sum_probs=178.1
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. |. . ++.+||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 30 ~Gtt~vgi~~~dgVvlaaD~r~~~-----~l-~--~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 101 (233)
T 1ryp_F 30 QGSVTVGLRSNTHAVLVALKRNAD-----EL-S--SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRK 101 (233)
T ss_dssp TSCCEEEEECSSEEEEEEECCCSS-----TT-B--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEEcCCEEEEEEEecccc-----cc-c--cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999999999999998 53 2 478999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--C
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--N 154 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~ 154 (260)
++++.++++++++++.| .+||++++||||||++| |+||++||+|++.+++++|+|+|+..|+++||+.|++ +
T Consensus 102 ~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~g-p~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ 180 (233)
T 1ryp_F 102 LAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 180 (233)
T ss_dssp CCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTE-EEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCc-CEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccc
Confidence 99999999999998643 35999999999999865 9999999999999999999999999999999999998 9
Q ss_pred C--CHHHHHHHHHHHHHHHHhhc-CCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384 155 L--SEKEGLTLMVDAIKAGILYD-LGSGSKVDVTIIRKNGQVSSYKPYKVL 202 (260)
Q Consensus 155 m--s~eeai~la~~al~~~~~~D-~~sg~~iev~vit~~g~~~~l~~~~~~ 202 (260)
| |++||++++++||..++ +| ..++.+++|++|+++++++++.+.+++
T Consensus 181 m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~ 230 (233)
T 1ryp_F 181 IDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVA 230 (233)
T ss_dssp CCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHH
Confidence 9 99999999999999999 88 578999999999999559999877764
No 37
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.9e-44 Score=315.83 Aligned_cols=190 Identities=19% Similarity=0.196 Sum_probs=179.3
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP 83 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 83 (260)
||+|||+++||||||+|+|.++ |+++..++++||++|++||+|++||..||++.|+++++.+++.|+++++++++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~-----g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQ-----GNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 75 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CeEEEEEECCEEEEEECCCCCc-----CCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCC
Confidence 7999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhc----cCcceeeEEEEEEeCCCC-----ceEEEEeecceEEee--CEEEEcCChHHHHHHHHhccC
Q psy15384 84 VICPVTMIKQTLYKY----HGYLMCAFIIGGIDSAGG-----NQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGWK 152 (260)
Q Consensus 84 v~~l~~~l~~~l~~~----~~p~g~sliiaG~D~~g~-----p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y~ 152 (260)
++.++++|+++++++ .+||++++||||||++++ |+||++||+|++.++ +++|+|+|+.+|+++||+.|+
T Consensus 76 v~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~ 155 (235)
T 1q5q_H 76 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS 155 (235)
T ss_dssp HHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcC
Confidence 999999999998864 469999999999998766 999999999999999 999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCc--E-----EEEEEEcCCcEEEccCc
Q psy15384 153 ENLSEKEGLTLMVDAIKAGILYDLGSGSK--V-----DVTIIRKNGQVSSYKPY 199 (260)
Q Consensus 153 ~~ms~eeai~la~~al~~~~~~D~~sg~~--i-----ev~vit~~g~~~~l~~~ 199 (260)
++||++||++++++||..++++|..+++. + +|++|+++| ++++.+.
T Consensus 156 ~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g-~~~l~~~ 208 (235)
T 1q5q_H 156 PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEE 208 (235)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC-eEEeCHH
Confidence 99999999999999999999999887652 3 999999998 9887443
No 38
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.4e-44 Score=316.11 Aligned_cols=191 Identities=20% Similarity=0.259 Sum_probs=177.6
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. + ++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus 33 ~Gtt~vgi~~~dgVvlaaD~r~~~-----~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 106 (246)
T 1j2p_A 33 RGATAIGIKCKEGVILIADKRVGS-----K-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIP 106 (246)
T ss_dssp TSCCEEEEEETTEEEEEEECCCSC-----T-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred cCCcEEEEEECCEEEEEEeccCCc-----c-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999999999999998 4 5668899999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384 82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS 156 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms 156 (260)
++++.++++++++++.|. +||++++|||||| +| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus 107 ~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 184 (246)
T 1j2p_A 107 ITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EV-PKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLS 184 (246)
T ss_dssp CCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SS-EEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CC-CEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCC
Confidence 999999999999987552 4999999999999 55 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEE-cCCcEEEccCccc
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIR-KNGQVSSYKPYKV 201 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit-~~g~~~~l~~~~~ 201 (260)
++||++++++||..++++ ..++.+++|++|+ ++++++++.+.++
T Consensus 185 ~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei 229 (246)
T 1j2p_A 185 FDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEEL 229 (246)
T ss_dssp HHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHH
T ss_pred HHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHH
Confidence 999999999999999998 6789999999999 6544888855544
No 39
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2.5e-44 Score=320.08 Aligned_cols=192 Identities=19% Similarity=0.170 Sum_probs=178.4
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.+. |. . ++++||++|++||+|++||..||++.|+++++.+++.|+++++++
T Consensus 31 ~Gtt~vgi~~~dgVVlaaD~r~~~-----gl-~--~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 102 (263)
T 1iru_F 31 QGSATVGLKSKTHAVLVALKRAQS-----EL-A--AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRP 102 (263)
T ss_dssp HSCCEEEEECSSEEEEEEECCCSS-----TT-B--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCcEEEEEeCCEEEEEEeccccc-----cc-c--cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 599999999999999999999998 53 2 478999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--C
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--N 154 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~ 154 (260)
++++.+++++++++++| .+||++++||||||++| |+||++||+|++.+++++|+|+|+.+++++||+.|++ +
T Consensus 103 i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 181 (263)
T 1iru_F 103 LPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181 (263)
T ss_dssp CCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTE-EEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCC-CEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCC
Confidence 99999999999998754 35999999999999865 9999999999999999999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHHHHhhc-CCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384 155 LSEKEGLTLMVDAIKAGILYD-LGSGSKVDVTIIRKNGQVSSYKPYKVL 202 (260)
Q Consensus 155 ms~eeai~la~~al~~~~~~D-~~sg~~iev~vit~~g~~~~l~~~~~~ 202 (260)
||++||++++++||..++++| ..++.+++|++|+++++++++.+.+++
T Consensus 182 ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~ 230 (263)
T 1iru_F 182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVS 230 (263)
T ss_dssp CCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGH
T ss_pred CCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHH
Confidence 999999999999999999999 478999999999999549988666553
No 40
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=4.7e-44 Score=322.92 Aligned_cols=192 Identities=19% Similarity=0.199 Sum_probs=181.3
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.++ |+++..++++|||+|++||+|++||+.+|++.++++++.+++.|+++++++
T Consensus 64 ~GtTiVgIk~kdGVVlAaD~r~t~-----G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~ 138 (294)
T 1q5r_H 64 HGTTIVALTYKGGVLLAGDRRATQ-----GNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVP 138 (294)
T ss_dssp BCCCEEEEECSSCEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCceEEEEEECCEEEEEEcCcccc-----CceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCC
Confidence 699999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc----cCcceeeEEEEEEeCCCC-----ceEEEEeecceEEee--CEEEEcCChHHHHHHHHhc
Q psy15384 82 IPVICPVTMIKQTLYKY----HGYLMCAFIIGGIDSAGG-----NQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAG 150 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~----~~p~g~sliiaG~D~~g~-----p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~ 150 (260)
++++.++++|+++++++ .+||++++||||||++++ |+||++||+|++.++ +|+|+|+|+.+|+++||+.
T Consensus 139 isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~ 218 (294)
T 1q5r_H 139 LTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKI 218 (294)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHh
Confidence 99999999999998865 369999999999998756 999999999999999 9999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCc--E-----EEEEEEcCCcEEEccCc
Q psy15384 151 WKENLSEKEGLTLMVDAIKAGILYDLGSGSK--V-----DVTIIRKNGQVSSYKPY 199 (260)
Q Consensus 151 y~~~ms~eeai~la~~al~~~~~~D~~sg~~--i-----ev~vit~~g~~~~l~~~ 199 (260)
|+++||++||++++++||..++++|..+++. + +|++|+++| ++++.+.
T Consensus 219 y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g-~~~l~~~ 273 (294)
T 1q5r_H 219 YSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEE 273 (294)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC-EEEcCHH
Confidence 9999999999999999999999999887653 6 999999998 9887433
No 41
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.8e-43 Score=312.21 Aligned_cols=183 Identities=19% Similarity=0.290 Sum_probs=171.6
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhh-cCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLEC-QFPKAHT 80 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~-~~~~~~~ 80 (260)
+|||+|||+++||||||+|+|.+. .++..++++||++|++||+|++||..||++.++++++.+++. |+..++.
T Consensus 30 ~Gtt~vgi~~~dgVvlaaD~r~~~------~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 103 (250)
T 1ryp_B 30 QGVTSLGIKATNGVVIATEKKSSS------PLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGE 103 (250)
T ss_dssp TSCCEEEEEETTEEEEEEECCCSC------SSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSS
T ss_pred cCCcEEEEEECCEEEEEEeccCCC------ccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 699999999999999999999874 889999999999999999999999999999999999999999 9888999
Q ss_pred CCChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCC
Q psy15384 81 DIPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENL 155 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~m 155 (260)
+++++.+++.+++++.++ .+||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++|
T Consensus 104 ~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~m 183 (250)
T 1ryp_B 104 YPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDEL 183 (250)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCC
Confidence 999999988888876543 259999999999998666999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384 156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191 (260)
Q Consensus 156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g 191 (260)
|++||++++++||..+++++. ++++++|++|++++
T Consensus 184 s~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 184 ELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN 218 (250)
T ss_dssp CHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC
T ss_pred CHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccc
Confidence 999999999999999998865 79999999999985
No 42
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=2.3e-43 Score=311.51 Aligned_cols=181 Identities=19% Similarity=0.250 Sum_probs=162.0
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC-C
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAH-T 80 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~ 80 (260)
+|+|+|||+++||||||+|+|.. +++|||+|++||+||+||+++|++.|.+.++.+++.|++.++ .
T Consensus 26 ~GtT~vgi~~kdgVVlaadkr~~-------------~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~ 92 (248)
T 3mi0_A 26 RAKSVVALAYAGGVLFVAENPSR-------------SLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRR 92 (248)
T ss_dssp TSCCEEEEEETTEEEEEEECCCS-------------SSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred CCCcEEEEEeCCEEEEEEeCCCC-------------CCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 69999999999999999999943 489999999999999999999999999999999999999999 8
Q ss_pred CCChHhHHHHHHHH----HHhccCcceeeEEEEEEeC---CCCceEEEEeecceEEe-eCEEEEcCChHHHHHHHHhccC
Q psy15384 81 DIPVICPVTMIKQT----LYKYHGYLMCAFIIGGIDS---AGGNQLFSIFQHGSSHG-HKFCAMGTGLQPAMGILEAGWK 152 (260)
Q Consensus 81 ~i~v~~l~~~l~~~----l~~~~~p~g~sliiaG~D~---~g~p~Ly~idp~Gs~~~-~~~~aiGsgs~~a~~~Le~~y~ 152 (260)
+++++.+++++++. +++..+||++++||||||+ +++|+||++||+|++.. |+++|+|+|+..|+++||++|+
T Consensus 93 ~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~ 172 (248)
T 3mi0_A 93 DVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYA 172 (248)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcC
Confidence 99999999999854 3454679999999999997 35699999999999995 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-------hhcCCCCCcEEEEEEEcCCc---EEEc
Q psy15384 153 ENLSEKEGLTLMVDAIKAGI-------LYDLGSGSKVDVTIIRKNGQ---VSSY 196 (260)
Q Consensus 153 ~~ms~eeai~la~~al~~~~-------~~D~~sg~~iev~vit~~g~---~~~l 196 (260)
++||++||++++++||..++ .++. ++++++|+||+++++ ++++
T Consensus 173 ~~mt~eeai~la~~aL~~~~~~~~~~~~~~~-~~~~iev~vv~~~g~~~~f~~l 225 (248)
T 3mi0_A 173 ENASLTDALRIAVAALRAGSADTSGGDQPTL-GVASLEVAVLDANRPRRAFRRI 225 (248)
T ss_dssp TTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCccccc-CCCcEEEEEEECCCCcccEEEC
Confidence 99999999999999999999 5664 589999999999872 5555
No 43
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.1e-43 Score=320.05 Aligned_cols=194 Identities=20% Similarity=0.246 Sum_probs=164.6
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.++ |.++.+++++|||+|++||+|++||.+||++.++++++.+++.|++.++.+
T Consensus 56 ~GtTiVgi~~kdGVVlAaD~r~t~-----g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~ 130 (291)
T 2jay_A 56 HGTTIVALKYPGGVVMAGDRRSTQ-----GNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVP 130 (291)
T ss_dssp --CCEEEEEETTEEEEEECCC-------------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEEEEECCEEEEEECCCccC-----CCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 799999999999999999999999 889999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhcc----CcceeeEEEEEEeCCCC-----ceEEEEeecceEE--eeCEEEEcCChHHHHHHHHhc
Q psy15384 82 IPVICPVTMIKQTLYKYH----GYLMCAFIIGGIDSAGG-----NQLFSIFQHGSSH--GHKFCAMGTGLQPAMGILEAG 150 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~~----~p~g~sliiaG~D~~g~-----p~Ly~idp~Gs~~--~~~~~aiGsgs~~a~~~Le~~ 150 (260)
++++.+++++++++++++ +||++++||||||++++ |+||++||+|++. +++|+|+|+|+.+|+++||+.
T Consensus 131 i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~ 210 (291)
T 2jay_A 131 LTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL 210 (291)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHh
Confidence 999999999999998874 38999999999998766 9999999999999 899999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCc--E-----EEEEEEcCCcEEEccCccc
Q psy15384 151 WKENLSEKEGLTLMVDAIKAGILYDLGSGSK--V-----DVTIIRKNGQVSSYKPYKV 201 (260)
Q Consensus 151 y~~~ms~eeai~la~~al~~~~~~D~~sg~~--i-----ev~vit~~g~~~~l~~~~~ 201 (260)
|+++||++||++++++||..++++|..+++. + +|++|+++| ++++.+.++
T Consensus 211 ~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg-~~~l~~~ei 267 (291)
T 2jay_A 211 YSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG-AVDVPESRI 267 (291)
T ss_dssp GGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE-EEECCHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC-eEEcCHHHH
Confidence 9999999999999999999999999887653 2 699999998 998855444
No 44
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.4e-43 Score=317.47 Aligned_cols=181 Identities=23% Similarity=0.237 Sum_probs=172.6
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD 81 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (260)
+|||+|||+++||||||+|+|.++ |.++.. +.+|||+|++||+||+||+.||++.|+++++.+++.|+++++++
T Consensus 33 ~GtT~Vgik~kdGVVlAaD~r~t~-----gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~ 106 (288)
T 3nzj_F 33 NGTTSIGIKCNDGVVFAVEKLITS-----KLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTP 106 (288)
T ss_dssp TSCCEEEEEETTEEEEEEEEEECC-----TTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCcEEEEEECCEEEEEEcCCccc-----CCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 799999999999999999999999 766554 78999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc---cCC
Q psy15384 82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG---WKE 153 (260)
Q Consensus 82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~---y~~ 153 (260)
+++..++++|+++++.| .+||++++||||||++| |+||++||+|++.+++++|+|+|+..++++||+. |++
T Consensus 107 i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~ 185 (288)
T 3nzj_F 107 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPE 185 (288)
T ss_dssp CCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTE-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCC-CEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCC
Confidence 99999999999998765 35999999999999866 9999999999999999999999999999999999 999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEc
Q psy15384 154 NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRK 189 (260)
Q Consensus 154 ~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~ 189 (260)
+||++||++++++||..++.+|..++.+++|++|++
T Consensus 186 ~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 186 GLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp CCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 999999999999999999999988889999999998
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=7.3e-43 Score=310.07 Aligned_cols=187 Identities=16% Similarity=0.251 Sum_probs=167.1
Q ss_pred CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC-C
Q psy15384 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAH-T 80 (260)
Q Consensus 2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~ 80 (260)
+|||+|||+++||||||+|+|.. +++|||+|++||+||+||..||++.|+++++.+++.|++.++ +
T Consensus 26 ~Gtt~vgi~~~dgVVlaaD~rs~-------------~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 92 (259)
T 1q5q_A 26 RGRSVVVLTFRDGVLFVAENPST-------------ALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRR 92 (259)
T ss_dssp TSCCEEEEECSSEEEEEECCSCS-------------SSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred cCCcEEEEEeCCEEEEEEecCCC-------------CcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 69999999999999999999832 489999999999999999999999999999999999988887 4
Q ss_pred CCChHhHHHHHHHHH---Hhc-cCcceeeEEEEEEe--C-CCCceEEEEeecceEE-eeCEEEEcCChHHHHHHHHhccC
Q psy15384 81 DIPVICPVTMIKQTL---YKY-HGYLMCAFIIGGID--S-AGGNQLFSIFQHGSSH-GHKFCAMGTGLQPAMGILEAGWK 152 (260)
Q Consensus 81 ~i~v~~l~~~l~~~l---~~~-~~p~g~sliiaG~D--~-~g~p~Ly~idp~Gs~~-~~~~~aiGsgs~~a~~~Le~~y~ 152 (260)
++++..++++|++++ |.+ .+||++++|||||| + +++|+||++||+|++. +++++|+|+|+..|+++||++|+
T Consensus 93 ~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~ 172 (259)
T 1q5q_A 93 DVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR 172 (259)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhcc
Confidence 999999999999953 333 46999999999999 3 4459999999999999 89999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-----hhcCCCCCcEEEEEEEcCC---cEEEccCcccc
Q psy15384 153 ENLSEKEGLTLMVDAIKAGI-----LYDLGSGSKVDVTIIRKNG---QVSSYKPYKVL 202 (260)
Q Consensus 153 ~~ms~eeai~la~~al~~~~-----~~D~~sg~~iev~vit~~g---~~~~l~~~~~~ 202 (260)
++||++||++++++||..++ ++|. ++.+++|++|++++ +++++.+.+++
T Consensus 173 ~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~ 229 (259)
T 1q5q_A 173 ADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALE 229 (259)
T ss_dssp TTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHH
Confidence 99999999999999999999 8999 89999999999994 48888655554
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=8.4e-38 Score=263.33 Aligned_cols=168 Identities=19% Similarity=0.165 Sum_probs=152.8
Q ss_pred CCcceEEEEEeCCEEEEEEeCCCcccCCCCCce-eeccCcCceEEe-cCeEEEEecCChhHHHHHHHHHHHHHhhcCCCC
Q psy15384 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSI-LIDHNCSKINRL-SEKIYCCGAGSAADMKRLSGLVEANLECQFPKA 78 (260)
Q Consensus 1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~l-i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~ 78 (260)
++|||+|||+++||||||+|+|.+. |.+ +.+++++||++| ++|++||+||.+||++.+.++++.+++.|+
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~-----g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~--- 74 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTF-----GQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN--- 74 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEE-----TTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---
T ss_pred CCCeEEEEEEECCEEEEEECCCccC-----CCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---
Confidence 4799999999999999999999999 888 999999999999 999999999999999999999999999998
Q ss_pred CCCCChHhHHHHHHHHHHhcc--CcceeeEEEEEEeCCCCceEEEEeecceEEee--CEEEEcCChHHHHHHHHhccCC-
Q psy15384 79 HTDIPVICPVTMIKQTLYKYH--GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGWKE- 153 (260)
Q Consensus 79 ~~~i~v~~l~~~l~~~l~~~~--~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y~~- 153 (260)
+ ..+..+ ..|++.+++++ +||++++||| | + |+||++||+|++.++ +++|+|+|+.+|+++||+.|++
T Consensus 75 g--~~~~~~-~~l~~~~~~~~~~rp~~~~~lva--d--~-p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~ 146 (180)
T 2z3b_A 75 G--NLKRAA-VELAKEWRSDKVLRKLEAMLIVM--N--Q-DTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHA 146 (180)
T ss_dssp T--CHHHHH-HHHHHHHHHCTTGGGCCCCEEEE--C--S-SCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHH
T ss_pred C--ChHHHH-HHHHHHHHhhhCcCcceEEEEEE--c--C-CeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhcc
Confidence 3 233333 35677777654 6999999999 4 4 999999999999984 9999999999999999999998
Q ss_pred --CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 154 --NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 154 --~ms~eeai~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
+||.|| ++.+||+.+.+||..++++++|++|
T Consensus 147 ~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 147 GESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 999999 5789999999999999999999998
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=4.4e-37 Score=257.34 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=152.4
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEe-cCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRL-SEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI 82 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (260)
||+|||+++||||||+|+|.+. |.++.+++++||++| ++|++|++||.+||++.+.++++.+++.|++
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~-----g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------ 69 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSL-----GNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------ 69 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------
T ss_pred CeEEEEEECCEEEEEECCCCcc-----CCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------
Confidence 7999999999999999999999 889999999999999 9999999999999999999999999999986
Q ss_pred ChHhHHHHHHHHHHhccC--cceeeEEEEEEeCCCCceEEEEeecceEEeeC---EEEEcCChHHHHHHHHhccC-CCCC
Q psy15384 83 PVICPVTMIKQTLYKYHG--YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK---FCAMGTGLQPAMGILEAGWK-ENLS 156 (260)
Q Consensus 83 ~v~~l~~~l~~~l~~~~~--p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~---~~aiGsgs~~a~~~Le~~y~-~~ms 156 (260)
++...+..|++.+++++. |+ +.+++|+| + |+||++||+|++.+++ ++|+|+|+.+|+++||+.|+ ++||
T Consensus 70 ~~~~~~~~l~~~~~~~~~~r~~--~~~l~g~d--~-p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt 144 (174)
T 1g3k_A 70 HLLKSAVELAKDWRTDRALRKL--EAMLIVAD--E-KESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELS 144 (174)
T ss_dssp CHHHHHHHHHHHHHHSTTGGGC--CCEEEEEC--S-SCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCC
T ss_pred cHHHHHHHHHHHHHhccCcCcc--eEEEEEEC--C-CEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCC
Confidence 445667778888887643 65 56777887 4 9999999999999988 99999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEE
Q psy15384 157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIR 188 (260)
Q Consensus 157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit 188 (260)
.+ +++++||+.+.++|..++++++|++|+
T Consensus 145 ~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 145 AH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp HH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 55 799999999999999999999999985
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=5.9e-37 Score=255.75 Aligned_cols=165 Identities=21% Similarity=0.217 Sum_probs=150.6
Q ss_pred ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEe-cCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRL-SEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI 82 (260)
Q Consensus 4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i 82 (260)
||+|||+++||||||+|+|.+. |.++.+++++||++| ++|++|++||..||++.+.++++.+++.|+++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~-----g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~----- 70 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTF-----GSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN----- 70 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred CeEEEEEECCEEEEEECCCccc-----CCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----
Confidence 7999999999999999999999 899999999999999 99999999999999999999999999999865
Q ss_pred ChHhHHHHHHHHHHhcc--CcceeeEEEEEEeCCCCceEEEEeecceEEeeC--EEEEcCChHHHHHHHHhccC-CCCCH
Q psy15384 83 PVICPVTMIKQTLYKYH--GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK--FCAMGTGLQPAMGILEAGWK-ENLSE 157 (260)
Q Consensus 83 ~v~~l~~~l~~~l~~~~--~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~--~~aiGsgs~~a~~~Le~~y~-~~ms~ 157 (260)
.++.++++ .+.+++++ +||++++|+| | | |+||++||+|++.+++ ++|+|+|+.+|+++||+.|+ ++||.
T Consensus 71 ~~~~~~~l-~~~~~~~~~~~~~~~~~lv~--D--~-p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~ 144 (171)
T 1m4y_A 71 LTKAAVEL-AKDWRTDRVLRRLEALLLVA--D--K-ENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA 144 (171)
T ss_dssp HHHHHHHH-HHHHHHCTTGGGCCCEEEEE--C--S-SCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHH-HHHHHHhCCCCceEEEEEEE--c--C-CEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH
Confidence 25666665 44666654 4799999998 6 4 9999999999999998 99999999999999999999 99997
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384 158 KEGLTLMVDAIKAGILYDLGSGSKVDVTII 187 (260)
Q Consensus 158 eeai~la~~al~~~~~~D~~sg~~iev~vi 187 (260)
++++++||+.+++||..++++++|+++
T Consensus 145 ---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 ---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp ---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred ---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 678999999999999999999999874
No 49
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=29.08 E-value=82 Score=24.98 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=36.2
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccC
Q psy15384 142 PAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKP 198 (260)
Q Consensus 142 ~a~~~Le~~y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~ 198 (260)
.|.++++..|. .++.+||.+.+++.|...-..+ ++--+++++.+| ..+.-|
T Consensus 35 ~a~~~i~~~~~-~~~~~ea~~~a~~~l~~~r~g~----~~gY~fv~d~~g-~~l~hP 85 (181)
T 3ub6_A 35 ILEQGIHEYYK-SFDNDTARKMALDYFKRINDDK----GMIYMVVVDKNG-VVLFDP 85 (181)
T ss_dssp HHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTC----SSCEEEEECTTC-BEEECT
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHHhCccCC----CCCEEEEEeCCC-CEEEeC
Confidence 35556665554 4899999999999999876532 123788899998 555545
No 50
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=26.56 E-value=1.4e+02 Score=24.38 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc
Q psy15384 152 KENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ 192 (260)
Q Consensus 152 ~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~ 192 (260)
.+.+|+++|.+++..++..+.++ +-++-|.|++..|.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCC
Confidence 35799999999999999998875 45899999998885
No 51
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=23.64 E-value=1e+02 Score=23.79 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcE
Q psy15384 153 ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQV 193 (260)
Q Consensus 153 ~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~ 193 (260)
+.+|+++|.+++..++..+..+ +-++-|.|++..|..
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~l 46 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNT 46 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCE
Confidence 3589999999999999998764 468999999988853
No 52
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=21.45 E-value=1.3e+02 Score=22.81 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384 153 ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201 (260)
Q Consensus 153 ~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~ 201 (260)
.+++.+..++.+..||..++.+..+...+++|-+=.+.|.+++.....+
T Consensus 16 KgI~~e~v~eaie~AL~~A~kk~~g~~~~~~V~id~~tG~~~v~~~~~V 64 (129)
T 2kwp_A 16 KALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 (129)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEETTTTEEEEEEEEEE
T ss_pred hCcCHHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCCeEEEEEEEEE
Confidence 4799999999999999999988776677888877566676776655443
Done!