RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15384
(260 letters)
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 214 bits (546), Expect = 2e-69
Identities = 88/234 (37%), Positives = 136/234 (58%), Gaps = 6/234 (2%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTTI G+ + +GV++ ADTR+T I+ D NC+K++R+S KI+C GAG+AAD +
Sbjct: 28 TGTTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTE 82
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ L+ +N+E + V+ + M+KQ L+KY G++ I+ G+D G LFS
Sbjct: 83 AVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGS-HLFS 141
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I HGS+ + ++G+G AM +LE+ WK++L+++E + L DAI+AGI DLGSGS
Sbjct: 142 IHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSN 201
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSE 235
VDV ++ + Y + R K P GTT VL ++ I E
Sbjct: 202 VDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNICDIQEE 255
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 210 bits (538), Expect = 1e-68
Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 7/232 (3%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI GL++ DGVILGADTRAT S++ D +C KI+ ++ KIYCCGAG AAD +
Sbjct: 1 TTIAGLVFRDGVILGADTRATND-----SVVADKSCEKIHFIAPKIYCCGAGVAADTEMT 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
+ + + +E + V +++QTL++Y G++ + ++GG+D G QL+ +
Sbjct: 56 TRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGP-QLYEVH 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
HGS F A+G+G A+ +LE ++ N++ + L+V+AI AGIL DLGSG VD
Sbjct: 115 PHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVD 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSE 235
+I G + ++ + + + GTT VL+ +V P+ + E
Sbjct: 175 ACVITAGG-AKLQRALSTPTEPVQRAGRYRFAPGTTPVLTREVRPLTLELLE 225
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 210 bits (536), Expect = 2e-68
Identities = 89/227 (39%), Positives = 136/227 (59%), Gaps = 7/227 (3%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI G++Y+DG++LGADTRAT ++ D NCSKI+ +S IYCCGAG+AAD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTDMT 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
+ L+ +NLE V+ M+KQ L++Y GY+ A ++GG+D G L+SI+
Sbjct: 56 TQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGP-HLYSIY 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
HGS+ + MG+G AM + E ++ ++ E+E L+ +AI AGI DLGSGS +D
Sbjct: 115 PHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNID 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
+ +I KN + +PY V + + + + GTT VL+ ++ P+E
Sbjct: 175 LCVISKNK-LDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLE 220
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 208 bits (531), Expect = 7e-68
Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 6/226 (2%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI G+ + +GV++ ADTR+T I+ D NC+K++R+S KI+C GAG+AAD + +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
+ L+ +N+E + V+ + M+KQ L+KY G++ I+ G+D G LFSI
Sbjct: 56 TQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGS-HLFSIH 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
HGS+ + ++G+G AM +LE+ WK++L+++E + L DAI+AGI DLGSGS VD
Sbjct: 115 AHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
V ++ + Y + R K P GTT VL ++ I
Sbjct: 175 VCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNI 220
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 192 bits (489), Expect = 1e-61
Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
G +I + ++DGVILGAD+R T G+ I + K+ R+ +KI+CC +GSAAD
Sbjct: 7 SLGASIMAVTFKDGVILGADSRTTT----GAYIA-NRVTDKLTRVHDKIWCCRSGSAADT 61
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLF 120
+ ++ +V+ +LE + + ++ K+ Y+ L I+ G D +++
Sbjct: 62 QAIADIVQYHLE-LYTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVY 120
Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
+I GS H + G+G G + ++EN+S++E + + ++ I +D SG
Sbjct: 121 TIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGG 180
Query: 181 KVDVTIIRKNG 191
+ + ++ G
Sbjct: 181 VIRMVVLTAAG 191
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 186 bits (474), Expect = 2e-59
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 5/188 (2%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI + ++ GV+LGAD+R T GS I + K+ + ++I+CC +GSAAD + +
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTT----GSYIA-NRVTDKLTPIHDRIFCCRSGSAADTQAV 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
+ V L + + V ++ K+ Y+Y LM II G D G Q++S+
Sbjct: 56 ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVP 115
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
G F G+G G ++A ++E ++++E L +A+ + D SG +
Sbjct: 116 MGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 175
Query: 184 VTIIRKNG 191
+ I ++G
Sbjct: 176 LAAIAESG 183
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 180 bits (459), Expect = 4e-57
Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI + ++ GV++G+D+R + G+++ ++ K++ L ++I+C +GSAAD + +
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSA----GTAV-VNRVFDKLSPLHQRIFCALSGSAADAQAI 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
+ + LE + V+ ++K YKY L+ I+ G D G
Sbjct: 56 ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREG-GQVYGT 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
G F G+G G ++A +K ++ +E +AI + D SG +
Sbjct: 115 MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIY 174
Query: 184 VTIIRKNG-QVSSYKPYKV 201
+ I G ++
Sbjct: 175 LVTITAAGVDHRVILGDEL 193
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 181 bits (462), Expect = 2e-56
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 6/192 (3%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
GTT ++ G+I+ D+RAT G+ + K+ ++ + AG AAD
Sbjct: 73 AHGTTTLAFRFQGGIIVAVDSRATA----GNWVA-SQTVKKVIEINPFLLGTMAGGAADC 127
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
+ + + + I V ++ +Y+Y G L +I G G +
Sbjct: 128 QFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTI 187
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
+ + G+ +G+G A G+L++ +K +LS ++ L L +I A D SG
Sbjct: 188 YYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSG 247
Query: 180 SKVDVTIIRKNG 191
V++ + ++G
Sbjct: 248 GSVNLYHVTEDG 259
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 178 bits (454), Expect = 2e-56
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 7/189 (3%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TT + GVI+ AD+RAT G+ I K+ ++ + AG AAD
Sbjct: 1 TTTLAFKFRHGVIVAADSRATA----GAYIA-SQTVKKVIEINPYLLGTMAGGAADCSFW 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
L+ + I V ++ +Y+Y G L +I G D G L+ +
Sbjct: 56 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGP-GLYYV 114
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
G+ ++G+G A G+++ G+ +L ++ L AI D SG V
Sbjct: 115 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 174
Query: 183 DVTIIRKNG 191
++ +R++G
Sbjct: 175 NLYHVREDG 183
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 176 bits (449), Expect = 1e-55
Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 6/189 (3%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TT ++ G+I+ D+RAT G+ + ++ ++ + AG AAD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATA----GNWVA-SQTVKRVIEINPFLLGTMAGGAADCQFW 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
+ + + I V ++ +Y+Y G L +I G G ++ +
Sbjct: 56 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYV 115
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
G+ +G+G A G+L++ +K +LS ++ L L +I A D SG V
Sbjct: 116 DSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSV 175
Query: 183 DVTIIRKNG 191
++ + ++G
Sbjct: 176 NLYHVTEDG 184
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 175 bits (446), Expect = 5e-55
Identities = 9/190 (4%), Positives = 29/190 (15%), Gaps = 7/190 (3%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
+ + + +++ + R + I
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEG----RLYQ-VEYAREAVRRGTTAIGIACKDGVVLAVDR 56
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
+ K + T + I + + +
Sbjct: 57 RITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEML 116
Query: 123 FQHGSS-HGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
+ G ++ K E G
Sbjct: 117 AKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVV 176
Query: 182 VDVTIIRKNG 191
+++
Sbjct: 177 MELLEKEYRD 186
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 174 bits (444), Expect = 1e-54
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 8/191 (4%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
TGTT G+ +D VI+ + R TM + ++ N K+ ++ AG D +
Sbjct: 7 TGTTTVGITLKDAVIMATERRVTM-----ENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLF 120
L ++A LE + ++P+ T++ L + M ++GGID+A +F
Sbjct: 62 VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAP--HVF 119
Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
SI G S + + G+G G+LE+ + E ++ EG+ L++ AI A D SG
Sbjct: 120 SIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGG 179
Query: 181 KVDVTIIRKNG 191
+DV +I +
Sbjct: 180 MIDVAVITRKD 190
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 174 bits (443), Expect = 1e-54
Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 13/207 (6%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+TGT++ G+ +E GV++ AD + S+ N S+I R++ +G AD
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGSY-----GSLARFRNISRIMRVNNSTMLGASGDYADF 60
Query: 61 KRLSGLVEANLECQFPKAH-TDIPVICPVTMIKQTLYKYHGY---LMCAFIIGGIDSAGG 116
+ L ++ + + + + + +Y L +IGG
Sbjct: 61 QYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG--WKENLSEKEGLTLMVDAIKAGILY 174
L + G ++ A G G A +L + LS+ E L+ ++
Sbjct: 121 -FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYR 179
Query: 175 DLGSGSKVDVTIIRKNGQVSSYKPYKV 201
D S ++ + + G V P
Sbjct: 180 DARSYNRFQTATVTEKG-VEIEGPLST 205
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 173 bits (440), Expect = 3e-54
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 8/190 (4%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TT GL+ +DGV++ + RATM G+ I KI ++++++ AGS D + L
Sbjct: 1 TTTVGLVCKDGVVMATEKRATM----GNFI-ASKAAKKIYQIADRMAMTTAGSVGDAQFL 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
+ +++ + V T+ L Y + + +IGGIDS G ++SI
Sbjct: 56 ARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGK-SIYSI 114
Query: 123 -FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
G+ A G+G A G+LE + + E + L V AI + + D SG
Sbjct: 115 DPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDG 174
Query: 182 VDVTIIRKNG 191
+DV I ++
Sbjct: 175 IDVVKITEDE 184
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 174 bits (442), Expect = 3e-54
Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 18/214 (8%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+TGT++ + Y++GVI+ AD + S+L + ++ + + +G +DM
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSY-----GSLLRFNGVERLIPVGDNTVVGISGDISDM 60
Query: 61 KRLSGLVEAN-----LECQFPKAHTDIPVICPVTMIKQTLYKYHGY---LMCAFIIGGID 112
+ + L++ + A + + +Y+ L A I+ G+
Sbjct: 61 QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 120
Query: 113 SAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-----NLSEKEGLTLMVDA 167
S G L + G ++ A G G A +L + + +V+A
Sbjct: 121 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 180
Query: 168 IKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201
++ D S + II KN ++ K +V
Sbjct: 181 MRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQV 214
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 172 bits (439), Expect = 4e-54
Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 8/194 (4%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
G + + ++ V + AD R + + + + + KI + +++Y AG A D+
Sbjct: 6 YNGGAVMAMKGKNCVAIAADRRFGI----QAQL-VTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQ- 118
+ ++ ++ L K I ++M+ LY+ G +I G+D
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 119 LFSIFQHGSS-HGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
+ S+ G F GT + G+ E+ W+ N+ + A+ + D
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 178 SGSKVDVTIIRKNG 191
SG V V II K+
Sbjct: 181 SGMGVIVHIIEKDK 194
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 172 bits (437), Expect = 8e-54
Identities = 46/201 (22%), Positives = 77/201 (38%), Gaps = 15/201 (7%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
G TI + ED I+ +DTR + G SI + K +L++K +G D
Sbjct: 7 FNGGTILAIAGEDFAIVASDTRLSE----GFSIH-TRDSPKCYKLTDKTVIGCSGFHGDC 61
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
L+ ++EA L+ + + M+ LY + IIGG+D G +
Sbjct: 62 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 121
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAG---------WKENLSEKEGLTLMVDAIKA 170
+S GS F A G+ +L+ LS + L+ D +
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 181
Query: 171 GILYDLGSGSKVDVTIIRKNG 191
D+ +G + + I+ K G
Sbjct: 182 AAERDVYTGDALRICIVTKEG 202
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 171 bits (435), Expect = 1e-53
Identities = 33/191 (17%), Positives = 73/191 (38%), Gaps = 8/191 (4%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
+ G+ D V++ +D A + + + + K+ ++SEKI G A D +
Sbjct: 2 EYLIGIQGPDYVLVASDRVAAS-----NIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQF 56
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLY---KYHGYLMCAFIIGGIDSAGGNQLF 120
+ ++ N++ + ++ ++ L + ++ G D G L+
Sbjct: 57 AEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALY 116
Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
+ + F A G G + IL+ + +S + + L+ ++ + +
Sbjct: 117 YMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLP 176
Query: 181 KVDVTIIRKNG 191
V II KNG
Sbjct: 177 TFSVRIIDKNG 187
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 170 bits (434), Expect = 2e-53
Identities = 38/202 (18%), Positives = 78/202 (38%), Gaps = 10/202 (4%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
I G+ +D VIL + T ++ + K +LS AG A D +
Sbjct: 2 DIILGIRVQDSVILASSKAVTR-----GISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQF 56
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY---LMCAFIIGGIDS-AGGNQL 119
+ ++AN++ + ++ + ++Q L K +IGG D +L
Sbjct: 57 AEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPEL 116
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
+ I G+ + A G +L+ ++ +++ +EGL L+ ++
Sbjct: 117 YQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDF 176
Query: 180 SKVDVTIIRKNGQVSSYKPYKV 201
V V I+ K+G + ++
Sbjct: 177 KGVIVKIVDKDG-IRQVDDFQA 197
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 168 bits (427), Expect = 1e-51
Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 18/214 (8%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+TGT++ + Y++GVI+ AD + GS + + ++ + + +G +DM
Sbjct: 39 VTGTSVISMKYDNGVIIAADNLGSY----GSLLR-FNGVERLIPVGDNTVVGISGDISDM 93
Query: 61 KRLSGLVEAN-----LECQFPKAHTDIPVICPVTMIKQTLYKYHGY---LMCAFIIGGID 112
+ + L++ + A + + +Y+ L A I+ G+
Sbjct: 94 QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 153
Query: 113 SAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK-----ENLSEKEGLTLMVDA 167
S G L + G ++ A G G A +L + + +V+A
Sbjct: 154 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 213
Query: 168 IKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201
++ D S + II KN ++ K +V
Sbjct: 214 MRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQV 247
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 164 bits (418), Expect = 9e-51
Identities = 44/210 (20%), Positives = 73/210 (34%), Gaps = 24/210 (11%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
G TI G+ ED +L DTR SI K+ + I G AAD
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNIT----DYSIN-SRYEPKVFDCGDNIVMSANGFAADG 61
Query: 61 KRLSGLVEANLEC-QFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQ 118
L + +++ F + + I+ LY + II G+D G
Sbjct: 62 DALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGA 121
Query: 119 LFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK-----------------ENLSEKEGL 161
++S GS + A G M L+ + LS +E +
Sbjct: 122 VYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVI 181
Query: 162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191
L+ D+ + + G +++ I+ K+G
Sbjct: 182 KLVRDSFTSATERHIQVGDGLEILIVTKDG 211
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 158 bits (402), Expect = 1e-48
Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 9/194 (4%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+ G + + +D V + D R S + + KI ++ G A D+
Sbjct: 6 INGGIVVAMTGKDCVAIACDLRLGS----QSLG-VSNKFEKIFHYG-HVFLGITGLATDV 59
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGN-Q 118
L+ + K I ++ +LY+ ++ GI+S G
Sbjct: 60 TTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPF 119
Query: 119 LFSIFQHGSSH-GHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
+ G F GT G+ E+ ++ NL ++ + A+ D
Sbjct: 120 IAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDAL 179
Query: 178 SGSKVDVTIIRKNG 191
SG V II+K+
Sbjct: 180 SGWGAVVYIIKKDE 193
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 153 bits (387), Expect = 2e-45
Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 16/215 (7%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
GTTI L Y GV++ D R+T G+ I + K+ + AG+AA
Sbjct: 55 PHGTTIVALKYPGGVVMAGDRRSTQ----GNMIS-GRDVRKVYITDDYTATGIAGTAAVA 109
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPV----TMIKQTLYKYHGYLMCAFIIGGID---- 112
+ L LE + + M++ L L+ ++ G D
Sbjct: 110 VEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHAS 169
Query: 113 -SAGGNQLFSIFQHG--SSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIK 169
++ S G + + A+G+G A ++ + + GL + V+A+
Sbjct: 170 DPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALY 229
Query: 170 AGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
D +G V I + + +
Sbjct: 230 DAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPE 264
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 150 bits (380), Expect = 3e-44
Identities = 40/208 (19%), Positives = 68/208 (32%), Gaps = 23/208 (11%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
GTTI L Y+ GV+L D RAT G+ I + + E AG+A
Sbjct: 64 HGTTIVALTYKGGVLLAGDRRATQ----GNLIA-SRDVEAVYVTDEYSAAGIAGTAGIAI 118
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY----LMCAFIIGGIDSAG-- 115
L L LE + + + G L ++ G D
Sbjct: 119 ELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADD 178
Query: 116 ---GNQLFSIFQHGSSHGHK--FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
++ S G + + + A+G+G A L+ + + E+ L ++++
Sbjct: 179 ESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYD 238
Query: 171 GILYDLGSG-------SKVDVTIIRKNG 191
D +G I + G
Sbjct: 239 AADDDSATGGPDLTRGIYPTAVTITQAG 266
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 148 bits (375), Expect = 3e-44
Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 23/206 (11%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI L Y+ GV+L D RAT G+ I + K+ E AG+A L
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQ----GNLIA-SRDVEKVYVTDEYSAAGIAGTAGIAIEL 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY---------LMCAFIIGGIDSA 114
L LE + + + G L+ + + D +
Sbjct: 56 VRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDES 115
Query: 115 GGNQLFSIFQHGSSHGHK--FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
++ S G + + + A+G+G A L+ + + E+ L ++++
Sbjct: 116 RAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAA 175
Query: 173 LYDLGSG-------SKVDVTIIRKNG 191
D +G I + G
Sbjct: 176 DDDSATGGPDLTRGIYPTAVTITQAG 201
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 107 bits (267), Expect = 4e-28
Identities = 36/204 (17%), Positives = 78/204 (38%), Gaps = 28/204 (13%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G ++ L + DGV+ A+ +T K++ L +++ G + +
Sbjct: 26 RGRSVVVLTFRDGVLFVAENPSTA-------------LHKVSELYDRLGFAAVGKYNEFE 72
Query: 62 RLS--GLVEANLECQFPKAHTDIPVICPVTMIKQTL-------YKYHGYLMCAFIIGGID 112
L G+V A++ + D+ QTL K + +C +G +
Sbjct: 73 NLRRAGIVHADMRG-YSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVG 131
Query: 113 SAGGNQLFSIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
S QL+ I GS F MG +P + ++ +L + + + V+A++ G
Sbjct: 132 SPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQG 191
Query: 172 ILYDLGSG----SKVDVTIIRKNG 191
+ + ++V ++ ++
Sbjct: 192 GAGEGEKRNVDVASLEVAVLDQSR 215
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 104 bits (260), Expect = 4e-27
Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 30/211 (14%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK- 61
++ L Y GV+ A+ + + KI+ L +++ AG +
Sbjct: 27 AKSVVALAYAGGVLFVAENPSR-------------SLQKISELYDRVGFAAAGKFNEFDN 73
Query: 62 -RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLM----CAFIIGGIDSAG- 115
R G+ A+ + D+ + QTL + + G
Sbjct: 74 LRRGGIQFADTRG-YAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGE 132
Query: 116 --GNQLFSIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
+L+ I GS + F MG +P L+ + EN S + L + V A++AG
Sbjct: 133 TKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGS 192
Query: 173 LYDLGSG------SKVDVTIIRKNGQVSSYK 197
G + ++V ++ N +++
Sbjct: 193 ADTSGGDQPTLGVASLEVAVLDANRPRRAFR 223
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 84.7 bits (210), Expect = 8e-20
Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 25/214 (11%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCS--KINRLSEKIYCCGAGSAADM 60
T G++ DG++L A+ + T S L++ + S K+ +L++KI AG AD
Sbjct: 31 AGTAIGIMASDGIVLAAERKVT-------STLLEQDTSTEKLYKLNDKIAVAVAGLTADA 83
Query: 61 KRLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGG 110
+ L A + Q + DIPV + ++ IKQ T + G +FI G
Sbjct: 84 EILIN--TARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFG---VSFIYAG 138
Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
D G QL++ G+ G K ++G A +L+ +K+++ + + L + +
Sbjct: 139 YDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSK 198
Query: 171 GILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+ +++ IRK G K+
Sbjct: 199 TTDSSALTYDRLEFATIRK-GANDGEVYQKIFKP 231
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 83.4 bits (207), Expect = 2e-19
Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 25/201 (12%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
G T G+ +GV++ + +++ S L SK++ L+ I +G D +
Sbjct: 31 GVTSLGIKATNGVVIATEKKSS-------SPLAMSETLSKVSLLTPDIGAVYSGMGPDYR 83
Query: 62 RLSGLVEANLECQFPKAHT---DIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGG 110
L ++ P + V I Q T G + +I G
Sbjct: 84 VLVD--KSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFG---VSLLIAG 138
Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
D G L+ + GS K A+G G A LE W + L ++ + + + +K
Sbjct: 139 HDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKE 198
Query: 171 GILYDLGSGSKVDVTIIRKNG 191
+ + +++ II
Sbjct: 199 SVEGEFNG-DTIELAIIGDEN 218
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 81.6 bits (202), Expect = 1e-18
Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 30/216 (13%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
G+T G+ ++GV+LG + RAT S L++ + KI + I C +G AD +
Sbjct: 26 GSTAIGIATKEGVVLGVEKRAT-------SPLLESDSIEKIVEIDRHIGCAMSGLTADAR 78
Query: 62 RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKYHGYLM------CAFII 108
+ A DI V V + + A +I
Sbjct: 79 SMIE--HARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLI 136
Query: 109 GGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAI 168
G D+ G QLF G+ + + A+G+G + A L W +L+ KE L++ +
Sbjct: 137 AGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKIL 196
Query: 169 KAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
K + L + ++ I K +K+ +
Sbjct: 197 KQVMEEKLDE-NNAQLSCITKQ------DGFKIYDN 225
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 80.4 bits (199), Expect = 3e-18
Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 31/213 (14%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
G T G+ ++GVIL AD R S L++ + KI ++ E I +G AD +
Sbjct: 34 GATAIGIKCKEGVILIADKRVG-------SKLLEKDTIEKIYKIDEHICAATSGLVADAR 86
Query: 62 RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
L A +E Q + I V + KQ T Y G + +I G+
Sbjct: 87 VLID--RARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFG---VSLLIAGV 141
Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
+ +L+ G+ +K A+G G E ++++LS + + L + A+
Sbjct: 142 NE--VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLS 199
Query: 172 ILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
I +L ++V ++ + + +K +S
Sbjct: 200 IESEL-VPENIEVGYVKVDD-----RTFKEVSP 226
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 79.5 bits (197), Expect = 5e-18
Identities = 43/214 (20%), Positives = 83/214 (38%), Gaps = 28/214 (13%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
G+T G+ +GV L + R T SSI KI + I C +G AD K
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRITSPLMEPSSI------EKIVEIDAHIGCAMSGLIADAKT 87
Query: 63 LSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKYHGYLM-----CAFIIGG 110
L +A +E Q + + V V+ + M A + GG
Sbjct: 88 LID--KARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGG 145
Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
+D G QLF + G+ A+G+ + A L+ + ++++ KE + + +K
Sbjct: 146 VDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQ 204
Query: 171 GILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+ L + + +++ ++ + + + +
Sbjct: 205 VMEEKLNA-TNIELATVQPG------QNFHMFTK 231
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 79.7 bits (197), Expect = 5e-18
Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 23/199 (11%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
+T G+ +DGV+ G + S L + ++ + + AG AD +
Sbjct: 33 SSTAIGIRCKDGVVFGVEKLVL-------SKLYEEGSNKRLFNVDRHVGMAVAGLLADAR 85
Query: 62 RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
L+ A E ++ +IP+ V M TLY G C+F++G
Sbjct: 86 SLAD--IAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFG---CSFMLGSY 140
Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
G QL+ I G S+G+ CA+G Q A +E + ++ ++ + + I
Sbjct: 141 SVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIV 200
Query: 172 ILYDLGSGSKVDVTIIRKN 190
+++++ + +
Sbjct: 201 HDEVKDKAFELELSWVGEL 219
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 79.2 bits (196), Expect = 8e-18
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 38/217 (17%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
G+T G+ D V+LG + ++ K L D KI L + + AG AD +
Sbjct: 29 GSTAVGVRGRDIVVLGVEKKSVAK-------LQDERTVRKICALDDNVCMAFAGLTADAR 81
Query: 62 RLSGLVEANLECQFPKAH-----TDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFII 108
+ A +ECQ +H + V + +KQ T G + +I
Sbjct: 82 IVIN--RARVECQ---SHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFG---ISALI 133
Query: 109 GGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAI 168
G D G +L+ G+ H K A+G G + LE + + E + LT+ + I
Sbjct: 134 VGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKL-VI 192
Query: 169 KAGILYDLGSGSK-VDVTIIRKNGQVSSYKPYKVLSD 204
KA +L + SG K +++ ++R++ + K+L+
Sbjct: 193 KA-LLEVVQSGGKNIELAVMRRD------QSLKILNP 222
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 78.8 bits (195), Expect = 9e-18
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
G+T G+ + +GV+L +D + S LI+ N KI + + + +G AD +
Sbjct: 34 GSTALGMKFANGVLLISDKKVR-------SRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 86
Query: 62 RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
L A + Q K + + + + V Q T Y +G + I GI
Sbjct: 87 VLVD--FARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYG---VSLIFAGI 141
Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
D G +LF G+ + +K A+G+G + LE +KENL EKE +TL + A+K+
Sbjct: 142 DQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSS 200
Query: 172 ILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+ ++ I Y++
Sbjct: 201 LEEGE-ELKAPEIASITVG------NKYRIYDQ 226
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 78.8 bits (195), Expect = 1e-17
Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 25/200 (12%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
G G+ +GV+L + + SIL D K+ +++ I +G D +
Sbjct: 31 GAPSVGIKAANGVVLATEKKQK-------SILYDERSVHKVEPITKHIGLVYSGMGPDYR 83
Query: 62 RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
L A Q IP + V + Q T G + +I G
Sbjct: 84 VLVH--RARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFG---VSLLICGW 138
Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
+ G LF G+ K AMG LE + E+L ++ + + +K
Sbjct: 139 NE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKES 197
Query: 172 ILYDLGSGSKVDVTIIRKNG 191
+ ++V I + G
Sbjct: 198 FEGQMTE-DNIEVGICNEAG 216
Score = 78.1 bits (193), Expect = 2e-17
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 31/213 (14%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
GTT G+ +DGV+L D R T S L+ KI ++ + + +G AD +
Sbjct: 38 GTTAIGIACKDGVVLAVDRRIT-------SKLVKIRSIEKIFQIDDHVAAATSGLVADAR 90
Query: 62 RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
L A LE Q + +I + + IKQ T + G + +I GI
Sbjct: 91 VLID--RARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFG---VSLLIAGI 145
Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
D +LF G+ +K A+G+G M +LE ++++++ EGL L + A+
Sbjct: 146 DKNEA-RLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKA 204
Query: 172 ILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+ VDV II +K +
Sbjct: 205 N--EDIKPENVDVCIITVKDA-----QFKKIPV 230
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 78.1 bits (193), Expect = 2e-17
Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 25/211 (11%)
Query: 3 GTTICGLLYEDGVILGADTRATMK--DASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
T G+L DGV+L A+ R K D S KI +L+E + C AG +D
Sbjct: 31 AGTCLGILANDGVLLAAERRNIHKLLDEVFFS-------EKIYKLNEDMACSVAGITSDA 83
Query: 61 KRLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGG 110
L+ E L Q IP + + IKQ T + G + + G
Sbjct: 84 NVLTN--ELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFG---VSLLYIG 138
Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NLSEKEGLTLMVDAIK 169
D G QL+ G+ G K +G A+ +L+ +KE ++ K L L + +
Sbjct: 139 WDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLN 198
Query: 170 AGILYDLGSGSKVDVTIIRKNGQVSSYKPYK 200
+ S KV++ + + + + K
Sbjct: 199 KTMDVSKLSAEKVEIATLTRENGKTVIRVLK 229
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 75.4 bits (186), Expect = 2e-16
Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 41/220 (18%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCS--KINRLSEKIYCCGAGSAADM 60
GT G+ ++ V+LG + R+T+K L D + K++++ + +G AD
Sbjct: 28 GTCAVGVKGKNCVVLGCERRSTLK-------LQDTRITPSKVSKIDSHVVLSFSGLNADS 80
Query: 61 KRLSGLVEANLECQFPKAH-----TDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFI 107
+ L +A +E Q +H + V V ++Q T G + +
Sbjct: 81 RILIE--KARVEAQ---SHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFG---VSTL 132
Query: 108 IGGIDSA-GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVD 166
I G D +L+ G +G + LE + +
Sbjct: 133 IAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKL 192
Query: 167 AIKAGILYD-LGSGSK-VDVTIIRKNGQVSSYKPYKVLSD 204
+++ L + + +G+K +++T+++ + LS
Sbjct: 193 TVRS--LLEVVQTGAKNIEITVVKPD------SDIVALSS 224
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 74.9 bits (185), Expect = 3e-16
Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 29/214 (13%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
G T + +D ++ + K S++ + + +++E I C G AD +
Sbjct: 36 GLTSVAVRGKDCAVIVTQKKVPDKLLDSSTV------THLFKITENIGCVMTGMTADSRS 89
Query: 63 LSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGID 112
A E K +IPV + I Q T G C I+ GID
Sbjct: 90 QVQ--RARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG---CCMILIGID 144
Query: 113 SAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--NLSEKEGLTLMVDAIKA 170
G Q++ G G K A G + LE K+ + + ++ + + +
Sbjct: 145 EEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLST 204
Query: 171 GILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+ D S+++V ++ +++L++
Sbjct: 205 VLSIDF-KPSEIEVGVVTVEN-----PKFRILTE 232
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 74.6 bits (184), Expect = 3e-16
Identities = 31/207 (14%), Positives = 64/207 (30%), Gaps = 31/207 (14%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
+ +D ++ + + L+D S I +S I G D +
Sbjct: 30 NINSLAVRGKDCTVVISQKKVP-------DKLLDPTTVSYIFCISRTIGMVVNGPIPDAR 82
Query: 62 RLSGLVEANLECQFPKAH--TDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
+ A E + D+P + + Q T Y G +
Sbjct: 83 NAAL--RAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLG---VILTFVSV 137
Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN-------LSEKEGLTLM 164
D G ++ G G+K A G Q LE +K++ S ++ +
Sbjct: 138 DEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFA 197
Query: 165 VDAIKAGILYDLGSGSKVDVTIIRKNG 191
+ + + + + ++V + K+
Sbjct: 198 ITHMIDALGTEFSK-NDLEVGVATKDK 223
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 73.8 bits (182), Expect = 6e-16
Identities = 40/219 (18%), Positives = 66/219 (30%), Gaps = 40/219 (18%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
G+ GL +L A R L + KI + E + AG A D +
Sbjct: 31 GSVTVGLRSNTHAVLVALKRNA-------DELSSYQ-KKIIKCDEHMGLSLAGLAPDARV 82
Query: 63 LSGLVEANLECQFPKAH-----TDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIG 109
LS +C + V + Q T +G +I
Sbjct: 83 LSN--YLRQQCN---YSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYG---VGLLII 134
Query: 110 GIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE----NLSEKEGLTLMV 165
G D G L G+ A+G Q A LE + + E + V
Sbjct: 135 GYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGV 193
Query: 166 DAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+AI + + + + + I+ K+ P+ +
Sbjct: 194 EAISQSLRDESLTVDNLSIAIVGKD------TPFTIYDG 226
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 73.1 bits (180), Expect = 2e-15
Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 42/262 (16%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
G+ GL + +L A RA S L H KI + I AG AD +
Sbjct: 32 GSATVGLKSKTHAVLVALKRAQ-------SELAAHQ-KKILHVDNHIGISIAGLTADARL 83
Query: 63 LSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQTLYKYHGY--LMCAFIIGGIDSAG 115
L EC + +PV + + Q + +G +I G D
Sbjct: 84 LCN--FMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-M 140
Query: 116 GNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN--LSEKEGLTLMVDAIKAGIL 173
G +F + + ++G Q A LE E + E + + A++ +
Sbjct: 141 GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLP 200
Query: 174 YDLG-SGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK 232
+ + V + I+ K+ + + D +S + +E++
Sbjct: 201 AEQDLTTKNVSIGIVGKD------LEFTIYDD---------------DDVSPFLEGLEER 239
Query: 233 PSEGKKRKHGIDDSGDGPRSKM 254
P + D+ + M
Sbjct: 240 PQRKAQPAQPADEPAEKADEPM 261
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D* 3ty6_A
Length = 180
Score = 70.8 bits (173), Expect = 3e-15
Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCG-AGSAADMK 61
TTI + ++ + D + T G ++++ H K+ +L G AGS AD
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTF----GQAVVMKHTARKVRKLFNGKVLAGFAGSVADAF 60
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
L EA LE + + L K L+ + +G ++
Sbjct: 61 TLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIE 120
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIK 169
A+G+G A+ A K + A++
Sbjct: 121 PDDG-------ILAIGSGGNYALAAGRALKKHAGESMSASEIARAALE 161
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 69.6 bits (171), Expect = 2e-14
Identities = 50/216 (23%), Positives = 75/216 (34%), Gaps = 30/216 (13%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
GTT G+ DGV+ + T S L+ KI + I C +G D +
Sbjct: 30 GTTSIGIKCNDGVVFAVEKLIT-------SKLLVPQKNVKIQVVDRHIGCVYSGLIPDGR 82
Query: 62 RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
L E K T IP+ + Q TLY G + I GG+
Sbjct: 83 HLVN--RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFG---VSTIFGGV 137
Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILE---AGWKENLSEKEGLTLMVDAI 168
D G L+ + GS G+K A G G Q A LE E LS +E + I
Sbjct: 138 DK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 196
Query: 169 KAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+ +++++ + +K +
Sbjct: 197 YLAHEDNKEKDFELEISWC---SLSETNGLHKFVKG 229
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 70.1 bits (172), Expect = 2e-14
Identities = 50/216 (23%), Positives = 75/216 (34%), Gaps = 30/216 (13%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
GTT G+ DGV+ + T S L+ KI + I C +G D +
Sbjct: 34 GTTSIGIKCNDGVVFAVEKLIT-------SKLLVPQKNVKIQVVDRHIGCVYSGLIPDGR 86
Query: 62 RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
L E K T IP+ + Q TLY G + I GG+
Sbjct: 87 HLVN--RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFG---VSTIFGGV 141
Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILE---AGWKENLSEKEGLTLMVDAI 168
D G L+ + GS G+K A G G Q A LE E LS +E + I
Sbjct: 142 DK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 200
Query: 169 KAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+ +++++ + +K +
Sbjct: 201 YLAHEDNKEKDFELEISWC---SLSETNGLHKFVKG 233
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 64.2 bits (156), Expect = 6e-13
Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRL-SEKIYCCGAGSAADMKR 62
TTI + V++G D + ++ G++++ N K+ RL + K+ AG AD
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSL----GNTVM-KGNARKVRRLYNGKVLAGFAGGTADAFT 55
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSI 122
L L E LE + + L K L+ A G
Sbjct: 56 LFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVA-DEKESLIITGIGDVVQ 114
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWK-ENLSEKE 159
+ A+G+G A+ A + LS E
Sbjct: 115 PEEDQ-----ILAIGSGGNYALSAARALVENTELSAHE 147
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 58.1 bits (140), Expect = 9e-11
Identities = 37/163 (22%), Positives = 56/163 (34%), Gaps = 24/163 (14%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCG-AGSAADMKR 62
TTI + ++G D + T GS++L N K+ +L E G AGS AD
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTF----GSTVL-KGNARKVRKLGEGKVLAGFAGSVADAMT 55
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQ-----TLYKYHGYLMCAFIIGGIDSAGGN 117
L EA L V + K L + L+ A +G
Sbjct: 56 LFDRFEAKLR-----EWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGN- 109
Query: 118 QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NLSEKE 159
A+G+G A+ +A + +LS +E
Sbjct: 110 ------GEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSARE 146
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar
methabolism, structural genomics, PSI, protein structure
initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10
c.55.1.10
Length = 289
Score = 34.5 bits (80), Expect = 0.026
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 3 GTTI-CGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
GT + L+ DG I T + ++ D + ++ L S ++
Sbjct: 10 GTKLAAALIGADGQIRDRRELPTPASQTPEALR-DALSALVSPLQAHAQRVAIASTGIIR 68
Query: 62 RLSGLVE--ANLEC--QFP-----KAHTDIPVI 85
S L NL FP + T++P I
Sbjct: 69 DGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTI 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.048
Identities = 37/315 (11%), Positives = 83/315 (26%), Gaps = 116/315 (36%)
Query: 12 EDGVIL-GADTRATMKDASGSSILIDHNCSK---INRLSEKIY------CCGAGSAADM- 60
V++ G + SG + + C ++ KI+ C + +M
Sbjct: 150 AKNVLIDG------VL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQ---TLYKYHGYLMC------------- 104
++L ++ N ++I + + I+ L K Y C
Sbjct: 203 QKLLYQIDPNW-TSRSDHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 105 -AFIIG-----------GIDSAGGN--------------------QLFSIFQHGSSH--- 129
AF + D L +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 130 -----GHKF-CAM-GTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI---------- 172
+ ++ ++ + + WK +K + I++ +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDK-----LTTIIESSLNVLEPAEYRK 373
Query: 173 LYDLGSGSKVDVTIIRKNGQVSSYKPYKVLS----DRMPKCVQCIIPLGTTKVLSTQVIP 228
++D +++ + + P +LS D + V ++ L
Sbjct: 374 MFD-------RLSVFPPSAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSL------ 416
Query: 229 IEKKPSEGKKRKHGI 243
+EK+P E I
Sbjct: 417 VEKQPKESTISIPSI 431
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.094
Identities = 50/287 (17%), Positives = 89/287 (31%), Gaps = 111/287 (38%)
Query: 1 MTGTTICGLLYEDGVIL-----GADTRATMKDASGSSILI-------DHNCSKINRLSEK 48
+ G T G++ D+ + + +I + + L
Sbjct: 267 LKGATGHS----QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 49 I--YCC--GAGSAADMKRLSGLVEANLECQFPKAHTDIP----------------VIC-- 86
I G + M +S L + ++ K ++ +P V+
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 87 PVTMIKQTLYKYHGYL--MCAFIIGGIDSAGGNQ---LFS----IFQ----------HGS 127
P Q+LY + L A +G +Q FS F H S
Sbjct: 383 P-----QSLYGLNLTLRKAKA-------PSGLDQSRIPFSERKLKFSNRFLPVASPFH-S 429
Query: 128 SHGHKFCAMGTGLQPAM-GILEAGWKENLS-EKEGLTLMVDAIKAGILYDLGSGSKVDVT 185
L PA I + K N+S + + + V YD GS D+
Sbjct: 430 HL----------LVPASDLINKDLVKNNVSFNAKDIQIPV--------YDTFDGS--DLR 469
Query: 186 IIRKNGQVSSYKPYKVLSDRMPKCVQCII--PL---GTTKVLSTQVI 227
++ + +S+R+ V CII P+ TT+ +T ++
Sbjct: 470 VLSGS-----------ISERI---VDCIIRLPVKWETTTQFKATHIL 502
Score = 30.0 bits (67), Expect = 0.88
Identities = 37/275 (13%), Positives = 70/275 (25%), Gaps = 112/275 (40%)
Query: 16 ILGADTRATMKDASGSSIL------IDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEA 69
IL T D ++ + + ++ L E ++ L
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLGY----VSSLVEP------SKVGQFDQVLNLCLT 89
Query: 70 NLECQFPKA---HT---DIPVICPVTMIK--QTLYKYHGYLMCAF----IIGGIDSA--- 114
E + + H + T++K + + Y +SA
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSALFR 147
Query: 115 ----GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
G QL +IF G G Q G + ++E L +
Sbjct: 148 AVGEGNAQLVAIF--G---G----------Q---GNTDDYFEE-LRD------------- 175
Query: 171 GILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
LY +Y V +I K + + +
Sbjct: 176 --LYQ-------------------TYHVL----------VGDLI-----KFSAETLSELI 199
Query: 231 KKPSEGKK-RKHGID------DSGDGPRSKMLKSI 258
+ + +K G++ + + P L SI
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Score = 30.0 bits (67), Expect = 0.96
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 141 QPAMGILE-AGWKENLSEKEGLTLMVDAIKAG 171
QPA+ ++E A +++ L + +GL + DA AG
Sbjct: 1733 QPALTLMEKAAFED-L-KSKGL-IPADATFAG 1761
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 33.1 bits (74), Expect = 0.10
Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 14/104 (13%)
Query: 53 GAGSAADMKRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYL---------- 102
G S+ + + + ++A L C + + + V ++ ++
Sbjct: 227 GGESSLSVSKWNTFLKAMLVCSDAATNKNFNRLQDVFLLPDPSGQWRDTRVYGVFSNPWN 286
Query: 103 ---MCAFIIGGIDSA-GGNQLFSIFQHGSSHGHKFCAMGTGLQP 142
+C + +G ID + L + C P
Sbjct: 287 YSAVCVYSLGDIDKVFRTSSLKGYHSSLPNPRPGKCLPDQQPIP 330
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural PSI-2, protein structure initiative; HET:
MSE; 2.02A {Enterococcus faecalis}
Length = 326
Score = 31.1 bits (71), Expect = 0.33
Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 16/99 (16%)
Query: 3 GTTI-CGLLYEDGVILGADTRATMKDASGSSIL------IDHNCSKINRLSEKIYCCGAG 55
GTTI +L DGV+ + T G I+ I H N E G G
Sbjct: 15 GTTIKFAILTTDGVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMG 74
Query: 56 SAADMKRLSGLVE--ANL--ECQFP-----KAHTDIPVI 85
+ + G V NL P ++ IP
Sbjct: 75 TPGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALGIPFA 113
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel,
pilus assembly, outer-membrane, cell adhesion-T
protein-chaperone complex; 2.80A {Escherichia coli} PDB:
3ohn_A 1zdv_A
Length = 843
Score = 27.6 bits (61), Expect = 4.8
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 173 LYDLGSGSKVDVTIIRKNGQVSSYK-PYKVLS 203
+Y G+ + VTI +G + PY +
Sbjct: 290 IYAAGNSGDLQVTIKEADGSTQIFTVPYSSVP 321
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.65A {Cytophaga hutchinsonii}
Length = 321
Score = 27.2 bits (61), Expect = 5.7
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 15/97 (15%)
Query: 3 GTTI-CGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEK---IYCCGAGSA- 57
GT++ GL+ +G I A T +G + + +I ++ + G G
Sbjct: 28 GTSVKFGLVTPEGEIQNATRFMTADWVNGIGFV-ESMKLEIGNFLKQYPIVKGVGIGWPG 86
Query: 58 -ADMKR--------LSGLVEANLECQFPKAHTDIPVI 85
+ R + +V + I
Sbjct: 87 LVSLDRTKVILLPNIPSVVNVPIVEILRSEFPHIHFK 123
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A
{Thermus thermophilus}
Length = 302
Score = 26.8 bits (60), Expect = 7.5
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 15/96 (15%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSE----KIYCCGAGSAA 58
GT I +++ +L T G + + R + G G+
Sbjct: 10 GTKIAAGVFDGKRLLSKVVVPT--PKEGGERVAEALAEAAERAEREAGVRGEAIGLGTPG 67
Query: 59 DMKRLSGLVE--ANLEC--QFP-----KAHTDIPVI 85
+ G++ N+ FP + T PV
Sbjct: 68 PLDFRRGVIRFAPNIPGVQDFPIRRILEEATGRPVF 103
>3c9a_A Protein giant-lens; argos, EGF, EGFR inhibitor, inhibitor,
developmental protein, glycoprotein, secreted, sensory
transduction, vision; 1.60A {Drosophila melanogaster}
PDB: 3cgu_A
Length = 223
Score = 26.7 bits (58), Expect = 7.7
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 61 KRLSGLVEANLE--CQFPKA------HTDIPVICPVTMIKQTLYKYHGYLM 103
KR L E N+ CQ PK HT VI + ++ + Y GY M
Sbjct: 164 KRQEFLDEVNINSLCQCPKGHRCPSHHTQSGVIAGESFLEDNIQTYSGYCM 214
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit;
two domain protein, mixed alpha-beta structure; NMR
{Methanothermobacterthermautotrophicus} SCOP: d.241.1.1
g.59.1.1
Length = 138
Score = 26.1 bits (57), Expect = 8.4
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 172 ILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQC 212
+L +LG+ ++ G+ + + + + D + K V C
Sbjct: 65 LLRELGTAGNLEGGRAILQGKFTHFLINERIEDYVNKFVIC 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,925,781
Number of extensions: 230802
Number of successful extensions: 612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 65
Length of query: 260
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 168
Effective length of database: 4,133,061
Effective search space: 694354248
Effective search space used: 694354248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)