RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15384
(260 letters)
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 155 bits (392), Expect = 2e-47
Identities = 85/226 (37%), Positives = 134/226 (59%), Gaps = 6/226 (2%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI G+ + +GV++ ADTR+T I+ D NC+K++R+S KI+C GAG+AAD + +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
+ L+ +N+E + V+ + M+KQ L+KY G++ I+ G+D G+ LFSI
Sbjct: 56 TQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIH 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
HGS+ + ++G+G AM +LE+ WK++L+++E + L DAI+AGI DLGSGS VD
Sbjct: 115 AHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
V ++ + Y + R K P GTT VL ++ I
Sbjct: 175 VCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNI 220
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 147 bits (371), Expect = 3e-44
Identities = 89/227 (39%), Positives = 136/227 (59%), Gaps = 7/227 (3%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI G++Y+DG++LGADTRAT ++ D NCSKI+ +S IYCCGAG+AAD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEG-----MVVADKNCSKIHFISPNIYCCGAGTAADTDMT 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
+ L+ +NLE V+ M+KQ L++Y GY+ A ++GG+D G L+SI+
Sbjct: 56 TQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDV-TGPHLYSIY 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
HGS+ + MG+G AM + E ++ ++ E+E L+ +AI AGI DLGSGS +D
Sbjct: 115 PHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNID 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
+ +I KN + +PY V + + + + GTT VL+ ++ P+E
Sbjct: 175 LCVISKNK-LDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLE 220
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 136 bits (343), Expect = 2e-40
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 5/188 (2%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI + ++ GV+LGAD+R T S + + K+ + ++I+CC +GSAAD + +
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTG-----SYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
+ V L + + V ++ K+ Y+Y LM II G D G Q++S+
Sbjct: 56 ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVP 115
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
G F G+G G ++A ++E ++++E L +A+ + D SG +
Sbjct: 116 MGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 175
Query: 184 VTIIRKNG 191
+ I ++G
Sbjct: 176 LAAIAESG 183
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 128 bits (323), Expect = 2e-37
Identities = 48/190 (25%), Positives = 95/190 (50%), Gaps = 6/190 (3%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G +I + ++DGVILGAD+R T + + + K+ R+ +KI+CC +GSAAD +
Sbjct: 8 LGASIMAVTFKDGVILGADSRTTT-----GAYIANRVTDKLTRVHDKIWCCRSGSAADTQ 62
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
++ +V+ +LE + + ++ K+ Y+ L I+ G D ++++
Sbjct: 63 AIADIVQYHLE-LYTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYT 121
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
I GS H + G+G G + ++EN+S++E + + ++ I +D SG
Sbjct: 122 IPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGV 181
Query: 182 VDVTIIRKNG 191
+ + ++ G
Sbjct: 182 IRMVVLTAAG 191
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 127 bits (320), Expect = 7e-37
Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 6/189 (3%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TT ++ G+I+ D+RAT + + ++ ++ + AG AAD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATA-----GNWVASQTVKRVIEINPFLLGTMAGGAADCQFW 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
+ + + I V ++ +Y+Y G L +I G G ++ +
Sbjct: 56 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYV 115
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
G+ +G+G A G+L++ +K +LS ++ L L +I A D SG V
Sbjct: 116 DSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSV 175
Query: 183 DVTIIRKNG 191
++ + ++G
Sbjct: 176 NLYHVTEDG 184
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 125 bits (316), Expect = 6e-36
Identities = 35/213 (16%), Positives = 81/213 (38%), Gaps = 24/213 (11%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G+T G+ +GV L + R T S ++ + KI + I C +G AD K
Sbjct: 26 LGSTAIGIQTSEGVCLAVEKRIT------SPLMEPSSIEKIVEIDAHIGCAMSGLIADAK 79
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY----------LMCAFIIGGI 111
L + + + + V + ++ A + GG+
Sbjct: 80 TLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGV 139
Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
D G QLF + G+ A+G+ + A L+ + ++++ KE + + +K
Sbjct: 140 DEKGP-QLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQ- 197
Query: 172 ILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
++ + + + +++ ++ + + + +
Sbjct: 198 VMEEKLNATNIELATVQPG------QNFHMFTK 224
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 123 bits (310), Expect = 4e-35
Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 18/214 (8%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+TGT++ + Y++GVI+ AD + S+L + ++ + + +G +DM
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSY-----GSLLRFNGVERLIPVGDNTVVGISGDISDM 60
Query: 61 KRLSGLVEANLEC-----QFPKAHTDIPVICPVTMIKQTLYKYHGYLM---CAFIIGGID 112
+ + L++ + A + + +Y+ + A I+ G+
Sbjct: 61 QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 120
Query: 113 SAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-----NLSEKEGLTLMVDA 167
S G L + G ++ A G G A +L + + +V+A
Sbjct: 121 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 180
Query: 168 IKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201
++ D S + II KN ++ K +V
Sbjct: 181 MRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQV 214
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 121 bits (303), Expect = 2e-34
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 7/189 (3%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TT + GVI+ AD+RAT + + K+ ++ + AG AAD
Sbjct: 1 TTTLAFKFRHGVIVAADSRATA-----GAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
L+ + I V ++ +Y+Y G L +I G D G L+ +
Sbjct: 56 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYV 114
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
G+ ++G+G A G+++ G+ +L ++ L AI D SG V
Sbjct: 115 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 174
Query: 183 DVTIIRKNG 191
++ +R++G
Sbjct: 175 NLYHVREDG 183
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 118 bits (296), Expect = 2e-33
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 6/189 (3%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TT GL+ +DGV++ + RATM + + KI ++++++ AGS D + L
Sbjct: 1 TTTVGLVCKDGVVMATEKRATM-----GNFIASKAAKKIYQIADRMAMTTAGSVGDAQFL 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
+ +++ + V T+ L Y + + +IGGIDS G +
Sbjct: 56 ARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSID 115
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
G+ A G+G A G+LE + + E + L V AI + + D SG +
Sbjct: 116 PIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGI 175
Query: 183 DVTIIRKNG 191
DV I ++
Sbjct: 176 DVVKITEDE 184
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 116 bits (291), Expect = 1e-32
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 9/192 (4%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
I G+ +D VIL + T ++ + K +LS AG A D +
Sbjct: 2 DIILGIRVQDSVILASSKAVTR-----GISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQF 56
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLM---CAFIIGGID-SAGGNQL 119
+ ++AN++ + ++ + ++Q L K +IGG D +L
Sbjct: 57 AEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPEL 116
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
+ I G+ + A G +L+ ++ +++ +EGL L+ ++
Sbjct: 117 YQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDF 176
Query: 180 SKVDVTIIRKNG 191
V V I+ K+G
Sbjct: 177 KGVIVKIVDKDG 188
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 116 bits (291), Expect = 2e-32
Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 24/210 (11%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
G TI G+ ED +L DTR + K+ + I G AAD
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNITD-----YSINSRYEPKVFDCGDNIVMSANGFAADG 61
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQ--TLYKYHGYLMCAFIIGGIDSAGGNQ 118
L + +++ + I Q K II G+D G
Sbjct: 62 DALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGA 121
Query: 119 LFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK-----------------ENLSEKEGL 161
++S GS + A G M L+ + LS +E +
Sbjct: 122 VYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVI 181
Query: 162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191
L+ D+ + + G +++ I+ K+G
Sbjct: 182 KLVRDSFTSATERHIQVGDGLEILIVTKDG 211
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 116 bits (292), Expect = 2e-32
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 18/208 (8%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G+T G+ D V+LG + ++ + + + KI L + + AG AD +
Sbjct: 27 KGSTAVGVRGRDIVVLGVEKKSV------AKLQDERTVRKICALDDNVCMAFAGLTADAR 80
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
+ + + V I +Y + +I G D G
Sbjct: 81 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGT 140
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDL 176
+L+ G+ H K A+G G + LE + + E + LT+ + IKA +
Sbjct: 141 PRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKL-VIKALLEVVQ 199
Query: 177 GSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
G +++ ++R++ + K+L+
Sbjct: 200 SGGKNIELAVMRRD------QSLKILNP 221
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 115 bits (289), Expect = 7e-32
Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 11/205 (5%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
T G+L DGV+L A+ R K + KI +L+E + C AG +D
Sbjct: 29 HAGTCLGILANDGVLLAAERRNIHK-----LLDEVFFSEKIYKLNEDMACSVAGITSDAN 83
Query: 62 ---RLSGLVEANLECQFPKAHTDIPVICPVTMIKQ--TLYKYHGYLMCAFIIGGIDSAGG 116
L+ Q+ + ++ + IKQ T + + + G D G
Sbjct: 84 VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 143
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NLSEKEGLTLMVDAIKAGILYD 175
QL+ G+ G K +G A+ +L+ +KE ++ K L L + + +
Sbjct: 144 FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS 203
Query: 176 LGSGSKVDVTIIRKNGQVSSYKPYK 200
S KV++ + + + + K
Sbjct: 204 KLSAEKVEIATLTRENGKTVIRVLK 228
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 115 bits (288), Expect = 1e-31
Identities = 36/213 (16%), Positives = 81/213 (38%), Gaps = 14/213 (6%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G T G+ +GV++ + +++ + + SK++ L+ I +G D +
Sbjct: 30 QGVTSLGIKATNGVVIATEKKSSSP------LAMSETLSKVSLLTPDIGAVYSGMGPDYR 83
Query: 62 RLSGLVEANLECQFPKAHT-DIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAG 115
L + + + P V+ + + + + + +I G D
Sbjct: 84 VLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFN 143
Query: 116 GNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYD 175
G L+ + GS K A+G G A LE W + L ++ + + + +K + +
Sbjct: 144 GFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE 203
Query: 176 LGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPK 208
+G +++ II + +D+ P+
Sbjct: 204 F-NGDTIELAIIGDEN-PDLLGYTGIPTDKGPR 234
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 114 bits (285), Expect = 2e-31
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 23/210 (10%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G+T G+ + +GV+L +D + S ++ ++ KI + + + +G AD +
Sbjct: 21 KGSTALGMKFANGVLLISDKKVR------SRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 74
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPV-------TMIKQTLYKYHGYLMCAFIIGGIDSA 114
L A + Q K V M + T Y + I GID
Sbjct: 75 VLVDF--ARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI 132
Query: 115 GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILY 174
G +LF G+ + +K A+G+G + LE +KENL EKE +TL + A+K+ +
Sbjct: 133 GP-RLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEE 191
Query: 175 DLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
++ I Y++
Sbjct: 192 GE-ELKAPEIASITVGN------KYRIYDQ 214
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 114 bits (286), Expect = 2e-31
Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 11/208 (5%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
T G++ DG++L A+ + T + D + K+ +L++KI AG AD +
Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTST-----LLEQDTSTEKLYKLNDKIAVAVAGLTADAE 84
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
L + + + DIPV V + Y + +FI G D G
Sbjct: 85 ILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYG 144
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDL 176
QL++ G+ G K ++G A +L+ +K+++ + + L + +
Sbjct: 145 YQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSA 204
Query: 177 GSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+ +++ IRK K+
Sbjct: 205 LTYDRLEFATIRKGA-NDGEVYQKIFKP 231
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 113 bits (284), Expect = 2e-31
Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 11/206 (5%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+TGT++ G+ +E GV++ AD + S+ N S+I R++ +G AD
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGSY-----GSLARFRNISRIMRVNNSTMLGASGDYADF 60
Query: 61 KRLSGLVEANL-ECQFPKAHTDIPVICPVTMIKQTLYKYHGY--LMCAFIIGGIDSAGGN 117
+ L ++ + + + + + + +Y + ++ G + G +
Sbjct: 61 QYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120
Query: 118 QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG--WKENLSEKEGLTLMVDAIKAGILYD 175
L + G ++ A G G A +L + LS+ E L+ ++ D
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180
Query: 176 LGSGSKVDVTIIRKNGQVSSYKPYKV 201
S ++ + + G V P
Sbjct: 181 ARSYNRFQTATVTEKG-VEIEGPLST 205
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 112 bits (281), Expect = 4e-31
Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 9/194 (4%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
+ G + + +D V + D R + S+ + + KI ++ G A D+
Sbjct: 6 INGGIVVAMTGKDCVAIACDLRLGSQ-----SLGVSNKFEKIFHYG-HVFLGITGLATDV 59
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGN-Q 118
L+ + K I ++ +LY+ ++ GI+S G
Sbjct: 60 TTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPF 119
Query: 119 LFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
+ G K F GT G+ E+ ++ NL ++ + A+ D
Sbjct: 120 IAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDAL 179
Query: 178 SGSKVDVTIIRKNG 191
SG V II+K+
Sbjct: 180 SGWGAVVYIIKKDE 193
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 113 bits (283), Expect = 5e-31
Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 24/214 (11%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G+T G+ ++GV+LG + RAT +L + KI + I C +G AD +
Sbjct: 25 LGSTAIGIATKEGVVLGVEKRATSP------LLESDSIEKIVEIDRHIGCAMSGLTADAR 78
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----------LMCAFIIGG 110
+ DI V + ++ A +I G
Sbjct: 79 SMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAG 138
Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
D+ G QLF G+ + + A+G+G + A L W +L+ KE L++ +K
Sbjct: 139 HDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQ 198
Query: 171 GILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
++ + + ++ I K +K+ +
Sbjct: 199 -VMEEKLDENNAQLSCITKQ------DGFKIYDN 225
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 112 bits (282), Expect = 8e-31
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 19/208 (9%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G T G+ ++GVIL AD R K +L KI ++ E I +G AD +
Sbjct: 30 RGATAIGIKCKEGVILIADKRVGSK------LLEKDTIEKIYKIDEHICAATSGLVADAR 83
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
L + I V I +Y Y + +I G++
Sbjct: 84 VLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVP- 142
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDL 176
+L+ G+ +K A+G G E ++++LS + + L + A+ I +L
Sbjct: 143 -KLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESEL 201
Query: 177 GSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
++V ++ + + +K +S
Sbjct: 202 VP-ENIEVGYVKVDD-----RTFKEVSP 223
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 112 bits (281), Expect = 1e-30
Identities = 33/194 (17%), Positives = 75/194 (38%), Gaps = 11/194 (5%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
+T G+ +DGV+ G + S + + + ++ + + AG AD +
Sbjct: 32 NSSTAIGIRCKDGVVFGVEKLVL------SKLYEEGSNKRLFNVDRHVGMAVAGLLADAR 85
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLM-----CAFIIGGIDSAGG 116
L+ + +IP+ + ++ Y Y C+F++G G
Sbjct: 86 SLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDG 145
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDL 176
QL+ I G S+G+ CA+G Q A +E + ++ ++ + + I
Sbjct: 146 AQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVK 205
Query: 177 GSGSKVDVTIIRKN 190
+++++ + +
Sbjct: 206 DKAFELELSWVGEL 219
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 111 bits (277), Expect = 1e-30
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 8/188 (4%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TT G+ +D VI+ + R TM + ++ N K+ ++ AG D + L
Sbjct: 1 TTTVGITLKDAVIMATERRVTM-----ENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVL 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
++A LE + ++P+ T++ L + M ++GGID+ +FSI
Sbjct: 56 VRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDT--APHVFSI 113
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
G S + + G+G G+LE+ + E ++ EG+ L++ AI A D SG +
Sbjct: 114 DAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMI 173
Query: 183 DVTIIRKN 190
DV +I +
Sbjct: 174 DVAVITRK 181
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 111 bits (279), Expect = 2e-30
Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 17/201 (8%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
T + +D ++ + + +L S I +S I G D +
Sbjct: 29 TNINSLAVRGKDCTVVISQKKVP------DKLLDPTTVSYIFCISRTIGMVVNGPIPDAR 82
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMI-----KQTLYKYHGYLMCAFIIGGIDSAGG 116
+ +A K D+P + T Y L +D G
Sbjct: 83 NAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELG 142
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI---- 172
++ G G+K A G Q LE +K++ + ++ I
Sbjct: 143 PSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMI 202
Query: 173 --LYDLGSGSKVDVTIIRKNG 191
L S + ++V + K+
Sbjct: 203 DALGTEFSKNDLEVGVATKDK 223
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 109 bits (274), Expect = 3e-30
Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 8/192 (4%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
G + + ++ V + AD R ++ + L+ + KI + +++Y AG A D++
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQ-----AQLVTTDFQKIFPMGDRLYIGLAGLATDVQT 61
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDS-AGGNQLF 120
++ ++ L K I ++M+ LY+ +I G+D +
Sbjct: 62 VAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFIC 121
Query: 121 SIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
S+ G F GT + G+ E+ W+ N+ + A+ + D SG
Sbjct: 122 SLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSG 181
Query: 180 SKVDVTIIRKNG 191
V V II K+
Sbjct: 182 MGVIVHIIEKDK 193
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 110 bits (277), Expect = 4e-30
Identities = 46/198 (23%), Positives = 70/198 (35%), Gaps = 15/198 (7%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
GTT G+ DGV+ + T K +L+ KI + I C +G D +
Sbjct: 29 NGTTSIGIKCNDGVVFAVEKLITSK------LLVPQKNVKIQVVDRHIGCVYSGLIPDGR 82
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQ-----TLYKYHGYLMCAFIIGGIDSAGG 116
L T IP+ + Q TLY + I GG+D G
Sbjct: 83 HLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NG 141
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILE---AGWKENLSEKEGLTLMVDAIKAGIL 173
L+ + GS G+K A G G Q A LE E LS +E + I
Sbjct: 142 AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHE 201
Query: 174 YDLGSGSKVDVTIIRKNG 191
+ +++++ +
Sbjct: 202 DNKEKDFELEISWCSLSE 219
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 107 bits (268), Expect = 4e-29
Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 16/212 (7%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI L Y+ GV+L D RAT +++ + K+ E AG+A L
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQG-----NLIASRDVEKVYVTDEYSAAGIAGTAGIAIEL 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY---------LMCAFIIGGIDSA 114
L LE + + + G L+ + + D +
Sbjct: 56 VRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDES 115
Query: 115 GGNQLFSIFQHG--SSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
++ S G + A+G+G A L+ + + E+ L ++++
Sbjct: 116 RAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAA 175
Query: 173 LYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
D +G I + +S+
Sbjct: 176 DDDSATGGPDLTRGIYPTAVTITQAGAVHVSE 207
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 106 bits (266), Expect = 5e-29
Identities = 32/191 (16%), Positives = 71/191 (37%), Gaps = 8/191 (4%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
+ G+ D V++ +D A + + + K+ ++SEKI G A D +
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASN-----IVQMKDDHDKMFKMSEKILLLCVGEAGDTVQF 56
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQ---TLYKYHGYLMCAFIIGGIDSAGGNQLF 120
+ ++ N++ + ++ ++ + ++ G D G L+
Sbjct: 57 AEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALY 116
Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
+ + F A G G + IL+ + +S + + L+ ++ + +
Sbjct: 117 YMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLP 176
Query: 181 KVDVTIIRKNG 191
V II KNG
Sbjct: 177 TFSVRIIDKNG 187
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 104 bits (260), Expect = 9e-28
Identities = 23/216 (10%), Positives = 71/216 (32%), Gaps = 29/216 (13%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G ++ L + DGV+ A+ +T K++ L +++ G + +
Sbjct: 18 RGRSVVVLTFRDGVLFVAENPSTALH-------------KVSELYDRLGFAAVGKYNEFE 64
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVT-----MIKQTLYKYHGYLMCAFIIGGIDSA-- 114
L + + + + + + + +
Sbjct: 65 NLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGS 124
Query: 115 -GGNQLFSIFQHGSSHGHKFCAMGTG-LQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
QL+ I GS + + G +P + ++ +L + + + V+A++ G
Sbjct: 125 PKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGG 184
Query: 173 LYDLGSG----SKVDVTIIRKNGQVSSYKPYKVLSD 204
+ + ++V ++ ++ + ++ ++
Sbjct: 185 AGEGEKRNVDVASLEVAVLDQSR---PRRAFRRIAG 217
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 103 bits (258), Expect = 1e-27
Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 15/201 (7%)
Query: 1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
G TI + ED I+ +DTR + + + K +L++K +G D
Sbjct: 7 FNGGTILAIAGEDFAIVASDTRLSEG-----FSIHTRDSPKCYKLTDKTVIGCSGFHGDC 61
Query: 61 KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
L+ ++EA L+ + + M+ LY + IIGG+D G +
Sbjct: 62 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 121
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILE---------AGWKENLSEKEGLTLMVDAIKA 170
+S GS F A G+ +L+ LS + L+ D +
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 181
Query: 171 GILYDLGSGSKVDVTIIRKNG 191
D+ +G + + I+ K G
Sbjct: 182 AAERDVYTGDALRICIVTKEG 202
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 102 bits (255), Expect = 6e-27
Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 23/211 (10%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G+ GL + +L A RA + L H KI + I AG AD +
Sbjct: 28 QGSATVGLKSKTHAVLVALKRAQSE-------LAAHQ-KKILHVDNHIGISIAGLTADAR 79
Query: 62 RLSGLVEAN-----LECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGG 116
L + P + + + T +I G D G
Sbjct: 80 LLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MG 138
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN--LSEKEGLTLMVDAIKAGILY 174
+F + + ++G Q A LE E + E + + A++ +
Sbjct: 139 PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPA 198
Query: 175 DLG-SGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+ + V + I+ K+ + + D
Sbjct: 199 EQDLTTKNVSIGIVGKDL------EFTIYDD 223
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 101 bits (252), Expect = 1e-26
Identities = 26/206 (12%), Positives = 67/206 (32%), Gaps = 11/206 (5%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
GT G+ ++ V+LG + R+T+K SK++++ + +G AD +
Sbjct: 27 RGTCAVGVKGKNCVVLGCERRSTLK-----LQDTRITPSKVSKIDSHVVLSFSGLNADSR 81
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
L + + V + +Y + +I G D
Sbjct: 82 ILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDD 141
Query: 117 N-QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYD 175
+L+ G +G + LE + + +++ +
Sbjct: 142 EPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVV 201
Query: 176 LGSGSKVDVTIIRKNGQVSSYKPYKV 201
+++T+++ + + + ++
Sbjct: 202 QTGAKNIEITVVKPDSDIVALSSEEI 227
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 97.8 bits (243), Expect = 2e-25
Identities = 37/212 (17%), Positives = 65/212 (30%), Gaps = 24/212 (11%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G+ GL +L A R + L + KI + E + AG A D +
Sbjct: 30 QGSVTVGLRSNTHAVLVALKRNADE-------LSSYQ-KKIIKCDEHMGLSLAGLAPDAR 81
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
LS + + + V ++ K +I G D +G
Sbjct: 82 VLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGA 141
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN----LSEKEGLTLMVDAIKAGI 172
L G+ A+G Q A LE + E + V+AI +
Sbjct: 142 -HLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL 200
Query: 173 LYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
+ + + + I+ K+ P+ +
Sbjct: 201 RDESLTVDNLSIAIVGKD------TPFTIYDG 226
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 97.0 bits (241), Expect = 7e-25
Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 19/210 (9%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G T + +D ++ + +L + + +++E I C G AD +
Sbjct: 34 GGLTSVAVRGKDCAVIVTQKKVP------DKLLDSSTVTHLFKITENIGCVMTGMTADSR 87
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
K +IPV I Y L C I+ GID G
Sbjct: 88 SQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG 147
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN--LSEKEGLTLMVDAIKAGILY 174
Q++ G G K A G + LE K+ + ++ + + + +
Sbjct: 148 PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSI 207
Query: 175 DLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
D S+++V ++ +++L++
Sbjct: 208 DFKP-SEIEVGVVTVEN-----PKFRILTE 231
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 94.0 bits (233), Expect = 7e-24
Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 11/194 (5%)
Query: 2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
G G+ +GV+L + + + + + K+ +++ I +G D +
Sbjct: 30 GGAPSVGIKAANGVVLATEKKQKSI------LYDERSVHKVEPITKHIGLVYSGMGPDYR 83
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIK----QTLYKYHGYLMCAFIIGGIDSAGGN 117
L + + IP V + + ++ + G
Sbjct: 84 VLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRP 143
Query: 118 QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
LF G+ K AMG LE + E+L ++ + + +K +
Sbjct: 144 YLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQM- 202
Query: 178 SGSKVDVTIIRKNG 191
+ ++V I + G
Sbjct: 203 TEDNIEVGICNEAG 216
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 92.2 bits (228), Expect = 1e-23
Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 12/186 (6%)
Query: 3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKI-YCCGAGSAADMK 61
TTI + ++ + D + T G ++++ H K+ +L AGS AD
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTF----GQAVVMKHTARKVRKLFNGKVLAGFAGSVADAF 60
Query: 62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
L EA LE + + L K L+ + +G
Sbjct: 61 TLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGT----- 115
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
A+G+G A+ A K + A++ + + +
Sbjct: 116 --GEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQ 173
Query: 182 VDVTII 187
+ + +
Sbjct: 174 IILEEL 179
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 84.0 bits (207), Expect = 1e-20
Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 13/181 (7%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
TTI + ++G D + T GS++L N K+ +L E G +
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTF----GSTVL-KGNARKVRKLGEGKVLAGFAGSVADAMT 55
Query: 64 SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
++ T V + + L+ I GN
Sbjct: 56 LFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGN------ 109
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
A+G+G A+ +A + ++ ++ A+ + + +
Sbjct: 110 GEVIQPDDDAAAIGSGGPYALAAAKALLRN--TDLSAREIVEKAMTIAGEICIYTNQNIV 167
Query: 184 V 184
+
Sbjct: 168 I 168
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 82.5 bits (203), Expect = 4e-20
Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 14/185 (7%)
Query: 4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSE-KIYCCGAGSAADMKR 62
TTI + V++G D + ++ G++++ N K+ RL K+ AG AD
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSL----GNTVM-KGNARKVRRLYNGKVLAGFAGGTADAFT 55
Query: 63 LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSI 122
L L E LE ++ + + ++ D + I
Sbjct: 56 LFELFERKLE------MHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGI 109
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
+ A+G+G A+ A + +E ++ +++ + + +
Sbjct: 110 GDVVQPEEDQILAIGSGGNYALSAARALVEN--TELSAHEIVEKSLRIAGDICVFTNTNF 167
Query: 183 DVTII 187
+ +
Sbjct: 168 TIEEL 172
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 88
Score = 26.4 bits (58), Expect = 1.1
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 135 AMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ 192
A G+ + + + + + A + G+ V +T +G
Sbjct: 29 AANAGVPKGVVVTKVDDRPI-------NSADALVAA--VRSKAPGATVALTFQDPSGG 77
>d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 150
Score = 27.1 bits (60), Expect = 1.4
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 65 GLVEANLECQFPKAHTDIPVIC-----PVTMIKQTLYKY---HGY 101
+V E +P + D PV V+ + L ++ G+
Sbjct: 55 LVVPREFELLYPAVNYDTPVTGHWSEEEVSFVAGWLKRFIEKGGF 99
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio
cholerae [TaxId: 666]}
Length = 66
Score = 24.6 bits (54), Expect = 3.6
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 157 EKEGLTLMV---DAIKAGILY 174
E EGLTL++ A +AG+
Sbjct: 45 EPEGLTLVLEAEKAQQAGLES 65
>d1pyfa_ c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillus
subtilis [TaxId: 1423]}
Length = 311
Score = 25.3 bits (54), Expect = 9.4
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 126 GSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI-------LYDLGS 178
G S + +G G + NL+E+ G L+ +AI+ G+ +Y +G
Sbjct: 6 GKS-DLQVFPIGLG---TNAVGGHNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGIGR 61
Query: 179 GSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQC 212
++ ++R+ + K +
Sbjct: 62 SEELIGEVLREFNREDVVIATKAAHRKQGNDFVF 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 958,476
Number of extensions: 42737
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 43
Length of query: 260
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,268,006
Effective search space: 224437062
Effective search space used: 224437062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)