BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15385
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 138/285 (48%), Gaps = 26/285 (9%)
Query: 20 LASAGAACF----THPFDLLKVHLQTQQEGK-----------VSVLGLTKLVLQREGVAG 64
L + AAC T P D KV LQ Q E + VLG +++ EG
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 65 LYNGISASLTRQLTYSTARFAIYEVGKQ---KAQEMSSDGKVTFLQTVMXXXXXXXXXXX 121
LYNG+ A L RQ+++++ R +Y+ KQ K E + G ++
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS-----RLLAGSTTGALAVA 120
Query: 122 XXVPTDLVNVRMQNDVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMA 181
PTD+V VR Q + +R Y+ + + +EEG + L+ G S R A++
Sbjct: 121 VAQPTDVVKVRFQAQARAGGGRR--YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 182 VGQIASYDQIKMRMLRSSYLKDDLGTHFLASLGSGLIATTLTQPLDVLKTRIMNAKPGQF 241
++ +YD IK +L+++ + DDL HF ++ G+G T + P+DV+KTR MN+ GQ+
Sbjct: 179 CAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQY 238
Query: 242 KSIMDVVLYT-AKLGPTGFFKGYFLAFARLAPQTVLTFVFLEQLR 285
S L K GP F+KG+ +F RL V+ FV EQL+
Sbjct: 239 HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLK 283
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 73/196 (37%), Gaps = 19/196 (9%)
Query: 13 ARWYFGGLASAGAACFTHPFDLLKVHLQTQQEGK-----VSVLGLTKLVLQREGVAGLYN 67
+R G A A P D++KV Q Q S + K + + EG+ GL+
Sbjct: 106 SRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWK 165
Query: 68 GISASLTRQLTYSTARFAIYEVGKQ---KAQEMSSDGKVTFLQTVMXXXXXXXXXXXXXV 124
G S ++ R + A Y++ K KA M+ D F
Sbjct: 166 GTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIAS---- 221
Query: 125 PTDLVNVRMQNDVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAVGQ 184
P D+V R N Q + H + R +EG + + G + LR V
Sbjct: 222 PVDVVKTRYMNSAL---GQYHSAGHCALTMLR---KEGPRAFYKGFMPSFLRLGSWNVVM 275
Query: 185 IASYDQIKMRMLRSSY 200
+Y+Q+K R L ++Y
Sbjct: 276 FVTYEQLK-RALMAAY 290
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 87/203 (42%), Gaps = 28/203 (13%)
Query: 7 DREKKVARWYFGGLASAGAA-----CFTHPFDLLKVHLQTQ-----QEGKVSVLG--LTK 54
DR K+ R++ G LAS GAA CF +P D + L + + + LG +TK
Sbjct: 103 DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 162
Query: 55 LVLQREGVAGLYNGISASLTRQLTYSTARFAIYEVGKQKAQEMSSDGK-VTFLQTVMXXX 113
+ + +G+ GLY G + S+ + Y A F +Y+ A+ M D K V + + M
Sbjct: 163 -IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDT----AKGMLPDPKNVHIIVSWMIAQ 217
Query: 114 XXXXXXXXXXVPTDLVNVRMQNDVKIPPEQRRN----YKHVFDGLYRVYKEEGFQRLFAG 169
P D V RM + R+ Y D ++ K+EG + F G
Sbjct: 218 TVTAVAGLVSYPFDTVRRRM-----MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272
Query: 170 ASAASLRTAVMAVGQIASYDQIK 192
A + LR A + YD+IK
Sbjct: 273 AWSNVLRGMGGAF-VLVLYDEIK 294
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 99 SDGKVTFLQTVMXXXXXXXXXXXXXVPTDLVNVRMQNDVKIPPEQ---RRNYKHVFDGLY 155
SD ++FL+ + P + V + +Q V+ +Q + YK + D +
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQ--VQHASKQISAEKQYKGIIDCVV 58
Query: 156 RVYKEEGFQRLFAGASAASLRTAVMAVGQIASYDQIKMRMLRSSYLKDDLGTHFLASLGS 215
R+ KE+GF + G A +R A D+ K L +F +L S
Sbjct: 59 RIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLAS 118
Query: 216 GLI--ATTLT--QPLDVLKTRI 233
G AT+L PLD +TR+
Sbjct: 119 GGAAGATSLCFVYPLDFARTRL 140
>pdb|1RV9|A Chain A, Crystal Structure Of Neisseria Meningitidis Protein
Nmb0706, Pfam Duf152
Length = 259
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 52 LTKLVLQREGVAGLYNGISASLTRQLTYSTAR 83
L +L+L+REGV G+Y G ++ + T+ + R
Sbjct: 209 LARLILKREGVGGVYGGTHCTVLERDTFFSYR 240
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 153 GLYRVYKEEGFQRLFAGASAASLRTAVMAVGQIASYDQIKMRMLRSSYLKDDLGTHFLAS 212
+YR+ +E+G+Q + +A++A G + D + + R +Y+++ A
Sbjct: 71 AIYRLLQEKGYQPDMVAGLSLGEYSALVASGALDFEDAVALVAKRGAYMEE------AAP 124
Query: 213 LGSGLIATTLTQPLDVLKTRIMNAK------PGQFKSIMDVVL 249
SG + L P++V++ A P + + +V+
Sbjct: 125 ADSGKMVAVLNTPVEVIEEACQKASELGVVTPANYNTPAQIVI 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,392,383
Number of Sequences: 62578
Number of extensions: 262066
Number of successful extensions: 465
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 6
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)