Query psy15385
Match_columns 295
No_of_seqs 154 out of 1716
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 19:38:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3.7E-59 1.3E-63 395.4 24.6 275 13-291 3-289 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.7E-57 5.8E-62 384.4 26.5 279 6-288 2-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 6.9E-36 2.4E-40 252.2 19.8 189 103-291 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.1E-35 3.8E-40 251.4 19.7 183 108-291 4-195 (303)
5 2a3d_A Protein (de novo three- 33.8 70 0.0024 18.5 4.0 38 31-68 10-47 (73)
6 3f2e_A SIRV coat protein; four 28.3 36 0.0012 21.2 2.1 37 39-75 1-41 (100)
7 3i71_A Ethanolamine utilizatio 20.7 55 0.0019 19.2 1.8 41 1-41 1-41 (68)
8 3arc_L Photosystem II reaction 15.4 79 0.0027 16.4 1.4 20 63-82 15-34 (37)
9 3tgu_G UQCRQ, mitochondrial ub 15.1 2.4E+02 0.0082 17.8 4.4 39 161-199 32-70 (81)
10 1q90_R Cytochrome B6-F complex 14.9 1.3E+02 0.0046 16.9 2.5 28 5-32 7-34 (49)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.7e-59 Score=395.39 Aligned_cols=275 Identities=32% Similarity=0.521 Sum_probs=252.2
Q ss_pred hHHHHHhhhhhhhhhhccchhHHHHHHHhcCC-----------CCCCHHHHHHHHHHhhhHhHhhcchHHHHHHHhhhhc
Q psy15385 13 ARWYFGGLASAGAACFTHPFDLLKVHLQTQQE-----------GKVSVLGLTKLVLQREGVAGLYNGISASLTRQLTYST 81 (295)
Q Consensus 13 ~~~~~g~~a~~~~~~~~~Pld~vk~~~q~~~~-----------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 81 (295)
.++++|++||+++.+++||+|++|+|+|++.. .+++..+++++|+++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999864 4689999999999999999999999999999999999
Q ss_pred chhhehHhhHHHHhhhcCCCCccHHHHHHHHhhhhhhhhcccchHHHHHHHhhcCCCCCCCCCCCCcchHHHHHHHHHhh
Q psy15385 82 ARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIGGFFGVPTDLVNVRMQNDVKIPPEQRRNYKHVFDGLYRVYKEE 161 (295)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (295)
++|.+||.+++.+.+.. ...+....+++|++||+++.++++|+|++|+|+|++... .....|+++++++++++++|
T Consensus 83 i~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp HTTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCCHHHHHHHHHHhc
Confidence 99999999999987421 246778899999999999999999999999999998542 23447899999999999999
Q ss_pred cHhHhhcchhhHHHHHHHhhhhHHhhHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHhhcCcHHHHHHHhhhcCCCCC
Q psy15385 162 GFQRLFAGASAASLRTAVMAVGQIASYDQIKMRMLRSSYLKDDLGTHFLASLGSGLIATTLTQPLDVLKTRIMNAKPGQF 241 (295)
Q Consensus 162 G~~gly~G~~~~~l~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~v~~r~q~~~~~~~ 241 (295)
|++|||||+.|.+++.+++.+++|.+||.+++.+.+....+.+....+++|.+||++++++++|+|+||+|||.+....|
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y 238 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQY 238 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999987655445667788999999999999999999999999999987789
Q ss_pred CcHHHHHHHHHHh-CccccccchHHHHHhHhhHHHHHHHHHHHHHHHhCcc
Q psy15385 242 KSIMDVVLYTAKL-GPTGFFKGYFLAFARLAPQTVLTFVFLEQLRLNFGFI 291 (295)
Q Consensus 242 ~~~~~~~~~i~~~-G~~~ly~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~ 291 (295)
.++++|+++++++ |++|||||+.++++|.+|.++++|.+||.+++.+...
T Consensus 239 ~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 239 HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp CSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999999999999999999999999887643
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.7e-57 Score=384.43 Aligned_cols=279 Identities=19% Similarity=0.281 Sum_probs=242.0
Q ss_pred chhhhhhhHHHHHhhhhhhhhhhccchhHHHHHHHhcCC--------CCCCHHHHHHHHHHhhhHhHhhcchHHHHHHHh
Q psy15385 6 DDREKKVARWYFGGLASAGAACFTHPFDLLKVHLQTQQE--------GKVSVLGLTKLVLQREGVAGLYNGISASLTRQL 77 (295)
Q Consensus 6 ~~~~~~~~~~~~g~~a~~~~~~~~~Pld~vk~~~q~~~~--------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~ 77 (295)
+++.+.++++++|++||+++.+++||+|++|+|+|++.. .+++..+++++++++||++|||||+.+++++.+
T Consensus 2 ~~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 81 (297)
T 1okc_A 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYF 81 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHH
Confidence 345677899999999999999999999999999999853 468999999999999999999999999999999
Q ss_pred hhhcchhhehHhhHHHHhhhcCCCC---ccHHHHHHHHhhhhhhhhcccchHHHHHHHhhcCCCCCCCCCCCCcchHHHH
Q psy15385 78 TYSTARFAIYEVGKQKAQEMSSDGK---VTFLQTVMIAGAGGGIGGFFGVPTDLVNVRMQNDVKIPPEQRRNYKHVFDGL 154 (295)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~ag~~~~~i~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~ 154 (295)
+..+++|.+||.+++.+....+... ......+++|++||+++.++++|+|++|+|+|++.... .....|+++++++
T Consensus 82 ~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~ 160 (297)
T 1okc_A 82 PTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-AAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-TTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-CcCcCCCCHHHHH
Confidence 9999999999999995432111111 23467889999999999999999999999999985321 2345789999999
Q ss_pred HHHHHhhcHhHhhcchhhHHHHHHHhhhhHHhhHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHhhcCcHHHHHHHhh
Q psy15385 155 YRVYKEEGFQRLFAGASAASLRTAVMAVGQIASYDQIKMRMLRSSYLKDDLGTHFLASLGSGLIATTLTQPLDVLKTRIM 234 (295)
Q Consensus 155 ~~i~~~~G~~gly~G~~~~~l~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~v~~r~q 234 (295)
++++++||++|||||+.|++++.+++.+++|.+||.+++.+.+.. +.+....+++|.+||++++++++|+|+||+|||
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 999999999999999999999999999999999999999775432 345667899999999999999999999999999
Q ss_pred hcCC-----CCCCcHHHHHHHHHHh-CccccccchHHHHHhHhhHHHHHHHHHHHHHHHh
Q psy15385 235 NAKP-----GQFKSIMDVVLYTAKL-GPTGFFKGYFLAFARLAPQTVLTFVFLEQLRLNF 288 (295)
Q Consensus 235 ~~~~-----~~~~~~~~~~~~i~~~-G~~~ly~G~~~~~~~~~~~~~~~~~~ye~~~~~~ 288 (295)
.+.. ..|.++++|+++++++ |++|||||+.++++|. +.++++|.+||.+++.+
T Consensus 239 ~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9753 3599999999999999 9999999999999995 57889999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6.9e-36 Score=252.16 Aligned_cols=189 Identities=18% Similarity=0.250 Sum_probs=165.0
Q ss_pred ccHHHHHHHHhhhhhhhhcccchHHHHHHHhhcCCCCC-CCCCCCCcchHHHHHHHHHhhcHhHhhcchhhHHHHHHHhh
Q psy15385 103 VTFLQTVMIAGAGGGIGGFFGVPTDLVNVRMQNDVKIP-PEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMA 181 (295)
Q Consensus 103 ~~~~~~~~~g~~ag~~~~~i~~P~d~ik~r~q~~~~~~-~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~l~~~~~~ 181 (295)
.+....+++|++||+++.++++|+|++|+|+|++.... ......|+++++++++++++||++|||||+.+.+++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 35677899999999999999999999999999975321 11234689999999999999999999999999999999999
Q ss_pred hhHHhhHHHHHHHHHhcccCCC----chhHHHHHHHHHHHHHHhhcCcHHHHHHHhhhcCC-----CCCCcHHHHHHHHH
Q psy15385 182 VGQIASYDQIKMRMLRSSYLKD----DLGTHFLASLGSGLIATTLTQPLDVLKTRIMNAKP-----GQFKSIMDVVLYTA 252 (295)
Q Consensus 182 ~~~~~~y~~l~~~~~~~~~~~~----~~~~~~~~g~~a~~~~~~~~~Pld~v~~r~q~~~~-----~~~~~~~~~~~~i~ 252 (295)
+++|.+||.+++.+........ .....+++|.+||++++++++|+|+||+|+|.+.. ..|.++++|+++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 9999999999996543322222 23557899999999999999999999999999853 46899999999999
Q ss_pred Hh-CccccccchHHHHHhHhhHHHHHHHHHHHHHHHhCcc
Q psy15385 253 KL-GPTGFFKGYFLAFARLAPQTVLTFVFLEQLRLNFGFI 291 (295)
Q Consensus 253 ~~-G~~~ly~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~ 291 (295)
++ |+++||||+.++++|.+|..++.|.+||.+++.+.+.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99 9999999999999999999999999999999987643
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=251.42 Aligned_cols=183 Identities=23% Similarity=0.328 Sum_probs=165.1
Q ss_pred HHHHHhhhhhhhhcccchHHHHHHHhhcCCCCCC----CCCCCCcchHHHHHHHHHhhcHhHhhcchhhHHHHHHHhhhh
Q psy15385 108 TVMIAGAGGGIGGFFGVPTDLVNVRMQNDVKIPP----EQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAVG 183 (295)
Q Consensus 108 ~~~~g~~ag~~~~~i~~P~d~ik~r~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~l~~~~~~~~ 183 (295)
.+++|++||+++.++++|+|++|+|+|++..... .....|+++++++++++++||+++||||+.+.+++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999864221 123468999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHhhcCcHHHHHHHhhhcCC----CCCCcHHHHHHHHHHh-Cccc
Q psy15385 184 QIASYDQIKMRMLRSSYLKDDLGTHFLASLGSGLIATTLTQPLDVLKTRIMNAKP----GQFKSIMDVVLYTAKL-GPTG 258 (295)
Q Consensus 184 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~v~~r~q~~~~----~~~~~~~~~~~~i~~~-G~~~ 258 (295)
+|.+||.+++.+.+... ..+....+++|.+||++++++++|+|+||+|+|.+.. ..|.++++++++++++ |+++
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 99999999999875422 3566778999999999999999999999999999864 3699999999999999 9999
Q ss_pred cccchHHHHHhHhhHHHHHHHHHHHHHHHhCcc
Q psy15385 259 FFKGYFLAFARLAPQTVLTFVFLEQLRLNFGFI 291 (295)
Q Consensus 259 ly~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~ 291 (295)
||||+.+++++.+|..++.|.+||.+++.+...
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988654
No 5
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=33.83 E-value=70 Score=18.47 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=23.2
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHhhhHhHhhcc
Q psy15385 31 PFDLLKVHLQTQQEGKVSVLGLTKLVLQREGVAGLYNG 68 (295)
Q Consensus 31 Pld~vk~~~q~~~~~~~~~~~~~~~i~~~~G~~gly~G 68 (295)
-+..||+|+|.-+.+-......-+.|-.-|.-..-|+|
T Consensus 10 rlaaiktrlqalggseaelaafekeiaafeselqaykg 47 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKG 47 (73)
T ss_dssp HHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678999999775444555555555554444444555
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=28.31 E-value=36 Score=21.19 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=19.8
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhH----hHhhcchHHHHHH
Q psy15385 39 LQTQQEGKVSVLGLTKLVLQREGV----AGLYNGISASLTR 75 (295)
Q Consensus 39 ~q~~~~~~~~~~~~~~~i~~~~G~----~gly~G~~~~~~~ 75 (295)
+|++..++.++-.-...++.+.|+ +.+|.|+...+.+
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvar 41 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVAR 41 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 355555566666666667777776 5677887766553
No 7
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=20.67 E-value=55 Score=19.15 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=27.3
Q ss_pred CCCCCchhhhhhhHHHHHhhhhhhhhhhccchhHHHHHHHh
Q psy15385 1 MSSKPDDREKKVARWYFGGLASAGAACFTHPFDLLKVHLQT 41 (295)
Q Consensus 1 m~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~vk~~~q~ 41 (295)
|+...+.-...+.+.--|..+|=++.-..-|+|..|..+..
T Consensus 1 m~e~~eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeq 41 (68)
T 3i71_A 1 MAESADELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQ 41 (68)
T ss_dssp ---CCHHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHH
Confidence 33344444445555666888888888889999998887653
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=15.38 E-value=79 Score=16.37 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=13.1
Q ss_pred hHhhcchHHHHHHHhhhhcc
Q psy15385 63 AGLYNGISASLTRQLTYSTA 82 (295)
Q Consensus 63 ~gly~G~~~~~~~~~~~~~~ 82 (295)
.+||.|+..-.+-.+++...
T Consensus 15 TSLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhh
Confidence 46888887766665555543
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=15.09 E-value=2.4e+02 Score=17.80 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=28.4
Q ss_pred hcHhHhhcchhhHHHHHHHhhhhHHhhHHHHHHHHHhcc
Q psy15385 161 EGFQRLFAGASAASLRTAVMAVGQIASYDQIKMRMLRSS 199 (295)
Q Consensus 161 ~G~~gly~G~~~~~l~~~~~~~~~~~~y~~l~~~~~~~~ 199 (295)
+|+-..+|-+...++..+|..++...+|+..++..+...
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666777788888889999998888776544
No 10
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=14.91 E-value=1.3e+02 Score=16.92 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=16.6
Q ss_pred CchhhhhhhHHHHHhhhhhhhhhhccch
Q psy15385 5 PDDREKKVARWYFGGLASAGAACFTHPF 32 (295)
Q Consensus 5 ~~~~~~~~~~~~~g~~a~~~~~~~~~Pl 32 (295)
++.....+-+++..+..+.++..+.+|.
T Consensus 7 pdm~RRqfln~l~~G~~a~~a~~~~~P~ 34 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPITTLALGY 34 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666666555566666666664
Done!