RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15385
(295 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 73.1 bits (180), Expect = 2e-16
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 101 GKVTFLQTVMIAGAGGGIGGFFGVPTDLVNVRMQNDVKIPPEQRRNYKHVFDGLYRVYKE 160
++FL +++ G G I P D+V R+Q R YK + D ++YKE
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQ---SSAAGGSRKYKGILDCFKKIYKE 57
Query: 161 EGFQRLFAGASAASLRTAVMAVGQIASYDQIKMRMLRSS 199
EG + L+ G LR A A +Y+ +K +L+
Sbjct: 58 EGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 71.1 bits (175), Expect = 8e-16
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 208 HFLASLGSGLIATTLTQPLDVLKTRIMNAKPG---QFKSIMDVVLYTAKL-GPTGFFKGY 263
LA +G IA T+T PLDV+KTR+ ++ G ++K I+D K G G +KG
Sbjct: 8 SLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGL 67
Query: 264 FLAFARLAPQTVLTFVFLEQLRLNFGFIK 292
R+AP + F E L+
Sbjct: 68 LPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 66.9 bits (164), Expect = 3e-14
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 18 GGLASAGAACFTHPFDLLKVHLQTQQEGKV----SVLGLTKLVLQREGVAGLYNGISASL 73
GG+A A AA T+P D++K LQ+ G +L K + + EG+ GLY G+ +L
Sbjct: 12 GGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNL 71
Query: 74 TRQLTYSTARFAIYEVGKQ 92
R + F YE K+
Sbjct: 72 LRVAPAAAIYFGTYETLKK 90
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 52.5 bits (126), Expect = 8e-08
Identities = 49/197 (24%), Positives = 73/197 (37%), Gaps = 17/197 (8%)
Query: 9 EKKVARWYF-------GGLASAGAACFTHPFDLLKVHLQT------QQEGKVSVLGLTKL 55
+K W F GGLA A + +P D + L + +E L K
Sbjct: 104 NQKTDFWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMK- 162
Query: 56 VLQREGVAGLYNGISASLTRQLTYSTARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAG 115
+ ++ G LY G S+ + Y A F +Y+ K A +D L +A
Sbjct: 163 ISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAK--ALLFGNDKNTNILYKWAVAQTV 220
Query: 116 GGIGGFFGVPTDLVNVRMQNDVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASL 175
+ G P D V RM + Y D ++ K EG F GA A L
Sbjct: 221 TILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVL 280
Query: 176 RTAVMAVGQIASYDQIK 192
R A A+ + YD+++
Sbjct: 281 RGAGGAL-VLVFYDELQ 296
Score = 40.5 bits (95), Expect = 5e-04
Identities = 66/294 (22%), Positives = 112/294 (38%), Gaps = 37/294 (12%)
Query: 18 GGLASAGAACFTHPFDLLKVHLQTQ------QEGKV----SVLGLTKLVLQREGVAGLYN 67
GG+++A + P + +K+ +QTQ + GKV ++ + V + +GV L+
Sbjct: 14 GGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGVLSLWR 73
Query: 68 GISASLTRQLTYSTARFAIYEVGKQ--KAQEMSSDGKVTFLQTVMIAGAGGGIGGFFGVP 125
G +A++ R FA + K +D F ++ G G P
Sbjct: 74 GNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFWKFFGVNILSGGLAGASSLLIVYP 133
Query: 126 TDLVNVRMQNDVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAVGQI 185
D R+ +D+ R + +FD L ++ K+ GF L+ G + V
Sbjct: 134 LDFARTRLASDIG--KGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYF 191
Query: 186 ASYDQIKMRMLRSSYLKDDLGTHFLASLGSGLIATTLT-------QPLDVLKTRIM---- 234
YD K + +D T+ L +A T+T P D ++ R+M
Sbjct: 192 GLYDSAK-----ALLFGNDKNTNILYKW---AVAQTVTILAGLISYPFDTVRRRMMMMSG 243
Query: 235 --NAKPGQFKSIMD-VVLYTAKLGPTGFFKGYFLAFARLAPQTVLTFVFLEQLR 285
Q+ +D G GFFKG + R A L VF ++L+
Sbjct: 244 RKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGA-GGALVLVFYDELQ 296
Score = 31.7 bits (72), Expect = 0.37
Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 14/176 (7%)
Query: 99 SDGKVTFLQTVMIAGAGGGIGGFFGVPTDLVNVRMQNDVKIP---PEQRRNYKHVFDGLY 155
D K F ++ G I P + V + +Q IP + Y + +
Sbjct: 1 MDKKTNFATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFR 60
Query: 156 RVYKEEGFQRLFAGASAASLRTAVMAVGQIASYDQIKMRMLRSSYLKDDLGTHFLASLGS 215
RV KE+G L+ G +A +R A D K M K D F ++ S
Sbjct: 61 RVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFK-NMFPKYNQKTDFWKFFGVNILS 119
Query: 216 GLIA----TTLTQPLDVLKTR----IMNAKPGQFKSIMDVVLYTAKLGPTGFFKGY 263
G +A + PLD +TR I +F + D ++ +K TGF Y
Sbjct: 120 GGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISK--QTGFLSLY 173
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 40.3 bits (94), Expect = 6e-04
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 20 LASAGAACFTHPFDLLKVHLQTQQEGKVSVLGLTKLVLQREGVAG-LYNGISASLTRQLT 78
+A A PF+++K ++Q G +SVL + QREG+ L + R++
Sbjct: 93 IAEITACIVRLPFEIVKQNMQVS--GNISVLKTIYEITQREGLPSFLGKSYFVMIVREIP 150
Query: 79 YSTARFAIYEVGKQKAQE--MSSDGKVTFLQTVMIAGAGGGIGGFFGVPTDLVNVR 132
+ ++ ++E K+KA++ K + + + G GGI GF P D++ R
Sbjct: 151 FDCIQYFLWETLKEKAKKDFGKFSKKYPSITSAICGGLAGGIAGFLTTPVDVIKSR 206
Score = 33.0 bits (75), Expect = 0.15
Identities = 73/295 (24%), Positives = 113/295 (38%), Gaps = 64/295 (21%)
Query: 18 GGLASAGAACFTHPFDLLKVHLQTQQEGKVSVLGLTKLVLQREGVAGLYNGISASLTRQL 77
G L+ +P D +K ++Q ++ S + LY+GI +L +
Sbjct: 10 GALSGVIVDAVLYPIDSIKTNIQAKKSFSFS------------DIKKLYSGILPTLVGTV 57
Query: 78 TYSTARFAIYEVGKQKAQEMSSDGKVT--FLQTVMIAGAGGGIGGFFGVPTDLVNVRMQN 135
S + YE+ K+ E + T +L + IA I +P ++V MQ
Sbjct: 58 PASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEITACI---VRLPFEIVKQNMQV 114
Query: 136 DVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAVGQIASYDQIKMRM 195
I V +Y + + EG F G S VM V +I +D I+ +
Sbjct: 115 SGNIS---------VLKTIYEITQREGLP-SFLGKS-----YFVMIVREIP-FDCIQYFL 158
Query: 196 LRS--SYLKDDLG---------THFLASLGSGLIATTLTQPLDVLKTR-IMNAKPGQFKS 243
+ K D G T + +G IA LT P+DV+K+R I+ KS
Sbjct: 159 WETLKEKAKKDFGKFSKKYPSITSAICGGLAGGIAGFLTTPVDVIKSRQIIYG-----KS 213
Query: 244 IMDVVLYTAKLGPTGFFKG-----YFLAFARLAPQTVLTFVFLEQLRLNFGFIKE 293
++ V A+ G F+KG +L F L +F LR F F KE
Sbjct: 214 YIETVTEIAEEGYLTFYKGCCFRSSYLFFGGL--------IFFGSLRF-FSFKKE 259
>gnl|CDD|115928 pfam07303, Occludin_ELL, Occludin homology domain. This domain
represents a conserved region approximately 100 residues
long within eukaryotic occludin proteins and the RNA
polymerase II elongation factor ELL. Occludin is an
integral membrane protein that localises to tight
junctions, while ELL is an elongation factor that can
increase the catalytic rate of RNA polymerase II
transcription by suppressing transient pausing by
polymerase at multiple sites along the DNA. This shared
domain is thought to mediate protein interactions.
Length = 101
Score = 31.1 bits (71), Expect = 0.17
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 141 PEQRRNYKHVFDGLYRVYKE 160
EQR+ YK FD Y+ YKE
Sbjct: 7 DEQRQRYKAEFDSDYQEYKE 26
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 31.1 bits (71), Expect = 0.66
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 110 MIAGAGGGIGGFFGVPTDLVNVRMQNDVKIPPEQRRNYKHVFDGLYRVYKE 160
IA G G+ FF LV V P + V+D L+ V+KE
Sbjct: 458 AIAAVGLGLLSFFDAAGQLVRVD---RTFEP---NPENRAVYDELFAVFKE 502
>gnl|CDD|224894 COG1983, PspC, Putative stress-responsive transcriptional regulator
[Transcription / Signal transduction mechanisms].
Length = 70
Score = 28.0 bits (63), Expect = 1.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 110 MIAGAGGGIGGFFGVPTDLVNV 131
MIAG GG+ +FG+ LV +
Sbjct: 13 MIAGVCGGLAEYFGIDPTLVRL 34
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional.
Length = 294
Score = 28.9 bits (65), Expect = 3.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 200 YLKDDLGTHFLASLGSGLIATTLTQPLDV 228
Y+ + LGT L G G++ATT T +
Sbjct: 53 YVAEFLGTFVLLFFGEGVVATTHTVGNNG 81
>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and
related eicosanoids are metabolized by the oxidation of
the 15(S)-hydroxyl group of the NAD+-dependent (type I
15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH)
followed by reduction by NADPH/NADH-dependent (type II
15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to
15-keto-13,14,-dihydroprostaglandins. 13-PGR is a
bifunctional enzyme, since it also has leukotriene B(4)
12-hydroxydehydrogenase activity. These 15-PGDH and
related enzymes are members of the medium chain
dehydrogenase/reductase family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 329
Score = 28.6 bits (65), Expect = 4.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 81 TARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIGGFFG 123
TA F + E+GK K E TV+++ A G +G G
Sbjct: 132 TAYFGLTEIGKPKPGE-----------TVVVSAAAGAVGSVVG 163
>gnl|CDD|204751 pfam11808, DUF3329, Domain of unknown function (DUF3329). This
family of proteins are functionally uncharacterized.
This family is only found in bacteria.
Length = 90
Score = 26.4 bits (59), Expect = 6.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 139 IPPEQRRNYKHVFDGLYR 156
PPE +++ VFDG+YR
Sbjct: 62 TPPEGSGSWEEVFDGIYR 79
>gnl|CDD|217850 pfam04024, PspC, PspC domain. This family includes Phage shock
protein C (PspC) that is thought to be a transcriptional
regulator. The presumed domain is 60 amino acid residues
in length.
Length = 62
Score = 25.5 bits (57), Expect = 7.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 110 MIAGAGGGIGGFFGVPTDLVNV 131
IAG G+ +FG+ LV +
Sbjct: 12 KIAGVCAGLAEYFGIDVTLVRL 33
>gnl|CDD|182541 PRK10551, PRK10551, phage resistance protein; Provisional.
Length = 518
Score = 27.6 bits (62), Expect = 8.7
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 184 QIASYDQIKMRMLRSSYLKDDLGTHFLASLGSGLIATTLTQPLDVLKTR----IMNA-KP 238
I Y + +R+ S+ +D+ L L SG++ L L L+ R I+ K
Sbjct: 216 TIPGYP-LTIRLYADSWTANDIWYALLLGLLSGILVGLLCYYLLSLRMRPGKEILTGIKR 274
Query: 239 GQFKSIMDVVLYTAKLGPTG 258
GQF V+ T L TG
Sbjct: 275 GQFYVEYQPVVDTQTLRVTG 294
>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 27.6 bits (62), Expect = 8.9
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 79 YSTARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIGGFFG-----VPTDLVNVRM 133
Y TA +A++E+G + Q+V++ A GG+G G VP ++ V
Sbjct: 123 YLTAYYALFELGNLRPG-----------QSVLVHSAAGGVGLAAGQLCKTVP-NVTVVGT 170
Query: 134 QNDVKIPPEQRRNYKHVFDGLYRVYKEE 161
+ K + HV D + Y EE
Sbjct: 171 ASASKHEALKENGVTHVIDYRTQDYVEE 198
>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 601
Score = 27.6 bits (62), Expect = 9.3
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 22/75 (29%)
Query: 109 VMIAGAGGGIGGFFGVPTDLVNVRMQNDVKIPPEQRRNYK--------HVFDGLYRVYKE 160
V +A GGGIG ++G NVR + I R N K V D L +
Sbjct: 111 VWLAKRGGGIGSYWG------NVRSIGE-PI----RNNGKSSGIIPFIKVMDSLTLAISQ 159
Query: 161 EGFQRLFAGASAASL 175
+R G+ A L
Sbjct: 160 GSLRR---GSFAVYL 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.394
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,111,280
Number of extensions: 1445270
Number of successful extensions: 1481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1468
Number of HSP's successfully gapped: 37
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)