RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15385
(295 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 338 bits (870), Expect = e-117
Identities = 86/284 (30%), Positives = 137/284 (48%), Gaps = 16/284 (5%)
Query: 14 RWYFGGLASAGAACFTHPFDLLKVHLQTQQEGKV-----------SVLGLTKLVLQREGV 62
++ G A+ A T P D KV LQ Q E + VLG +++ EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 63 AGLYNGISASLTRQLTYSTARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIGGFF 122
LYNG+ A L RQ+++++ R +Y+ KQ + ++ G +
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK--GSEHAGIGSRLLAGSTTGALAVAV 121
Query: 123 GVPTDLVNVRMQNDVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAV 182
PTD+V VR Q + R Y+ + + +EEG + L+ G S R A++
Sbjct: 122 AQPTDVVKVRFQAQARAGG--GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNC 179
Query: 183 GQIASYDQIKMRMLRSSYLKDDLGTHFLASLGSGLIATTLTQPLDVLKTRIMNAKPGQFK 242
++ +YD IK +L+++ + DDL HF ++ G+G T + P+DV+KTR MN+ GQ+
Sbjct: 180 AELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYH 239
Query: 243 SIMDVVLYTAK-LGPTGFFKGYFLAFARLAPQTVLTFVFLEQLR 285
S L + GP F+KG+ +F RL V+ FV EQL+
Sbjct: 240 SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLK 283
Score = 98.5 bits (246), Expect = 3e-24
Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 16/198 (8%)
Query: 18 GGLASAGAACFTHPFDLLKVHLQTQ-----QEGKVSVLGLTKLVLQREGVAGLYNGISAS 72
G A A P D++KV Q Q S + K + + EG+ GL+ G S +
Sbjct: 111 GSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPN 170
Query: 73 LTRQLTYSTARFAIYEVGKQ--KAQEMSSDGKVTFLQTVMIAGAGGGIGGFFGVPTDLVN 130
+ R + A Y++ K + +D + AG P D+V
Sbjct: 171 VARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGF---CTTVIASPVDVVK 227
Query: 131 VRMQNDVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAVGQIASYDQ 190
R N Y + ++EG + + G + LR V +Y+Q
Sbjct: 228 TRYMNS------ALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQ 281
Query: 191 IKMRMLRSSYLKDDLGTH 208
+K ++ + ++ H
Sbjct: 282 LKRALMAAYQSREAPFHH 299
Score = 49.6 bits (119), Expect = 3e-07
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 205 LGTHFLASLGSGLIATTLTQPLDVLKTRI----------MNAKPGQFKSIMDVVLYTAKL 254
+ FL + + IA +T PLD K R+ A Q++ ++ +L +
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 255 -GPTGFFKGYFLAFARLAPQTVLTFVFLEQLR 285
GP + G R + + ++
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVK 92
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 133 bits (336), Expect = 3e-37
Identities = 57/289 (19%), Positives = 102/289 (35%), Gaps = 29/289 (10%)
Query: 18 GGLASAGAACFTHPFDLLKVHLQTQQEGKV--------SVLGLTKLVLQREGVAGLYNGI 69
GG+A+A + P + +K+ LQ Q K ++ + + +G + G
Sbjct: 14 GGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGN 73
Query: 70 SASLTRQLTYSTARFAIYEVGKQ---KAQEMSSDGKVTFLQTVMIAGAGGGIGGFFGVPT 126
A++ R FA + KQ + F + GA G F P
Sbjct: 74 LANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL 133
Query: 127 DLVNVRMQNDVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAVGQIA 186
D R+ DV QR + + + + +++K +G + L+ G + + +
Sbjct: 134 DFARTRLAADVGKGAAQRE-FTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFG 192
Query: 187 SYDQIKMRMLRSSYLKDDLGTHFLASLG----SGLIATTLTQPLDVLKTRIM-----NAK 237
YD K L D H + S +A ++ P D ++ R+M
Sbjct: 193 VYDTAK------GMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGA 246
Query: 238 PGQFKSIMDVVLYTAKL-GPTGFFKGYFLAFARLAPQTVLTFVFLEQLR 285
+ +D AK GP FFKG + R V ++++
Sbjct: 247 DIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-AFVLVLYDEIK 294
Score = 44.6 bits (106), Expect = 2e-05
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 208 HFLASLGSGLIATTLTQPLDVLKTRIMN-------AKPGQFKSIMDVVLYTAKL-GPTGF 259
FLA + I+ T P++ +K + + Q+K I+D V+ K G F
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 260 FKGYFLAFARLAPQTVLTFVFLEQLRLNFGFIKEQK 295
++G R P L F F ++ + F ++
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRH 105
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 22/163 (13%), Positives = 53/163 (32%), Gaps = 44/163 (26%)
Query: 137 VKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAAS---LRTAVMAVGQIAS-----Y 188
+ + +F L +EE Q+ + L + + + S Y
Sbjct: 55 IMSKDAVSGTLR-LFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 189 DQIKMRMLRSS--YLKDDLGTHFLASLGSGLIATTLTQPLDVLKTRIMNAKPGQFKSIMD 246
+ + R+ + + K ++ + QP L+ ++ +P +
Sbjct: 113 IEQRDRLYNDNQVFAKYNV---------------SRLQPYLKLRQALLELRPAKN----- 152
Query: 247 VVLYTAKLGPTGFFKGYFLAFARLAPQTVLTFVFLEQLRLNFG 289
V++ G G K + +A L++ Q +++F
Sbjct: 153 VLID----GVLGSGKTW------VALDVCLSYKV--QCKMDFK 183
Score = 37.9 bits (87), Expect = 0.004
Identities = 41/288 (14%), Positives = 83/288 (28%), Gaps = 83/288 (28%)
Query: 32 FDLLKVHLQTQQEGKVSVLGLTKLVLQREGVAGLYNGISAS-LTRQLTYSTARFAIYEVG 90
D L T + LT + + + Y L R++ +T + +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVL-TTNPRRLSIIA 334
Query: 91 KQKAQEMSSDGKVT--FLQTVMIAGAGGGIGGFFGVPTDLVNVRMQNDVKI--PPEQRRN 146
E DG T + V D + +++ + + P E R+
Sbjct: 335 -----ESIRDGLATWDNWKHVNC---------------DKLTTIIESSLNVLEPAEYRKM 374
Query: 147 YKH--VFDGLYRVYKEEGFQRLFAGASAASLRTAVMAV--GQIASYDQIKM--RMLRSSY 200
+ VF A + T ++++ + D + + ++ + S
Sbjct: 375 FDRLSVF--------PPS----------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 201 LKDDL--GTHFLASLGSGLIATTLTQPLDVLKTRIMNAKPGQFKSIMDVVLYTAKLGPTG 258
++ T + S+ LK ++ N + +SI+D
Sbjct: 417 VEKQPKESTISIPSI------------YLELKVKLEN-EYALHRSIVDHYNIPKTFDSDD 463
Query: 259 FFK----GYF-------LAFARLAPQTVLTFVFLEQLRLNFGFIKEQK 295
YF L + + L+F F+ EQK
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPER----MTLFRMVFLDFRFL-EQK 506
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP:
h.4.17.1 PDB: 1wpa_A 3g7c_A
Length = 140
Score = 32.6 bits (74), Expect = 0.064
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 142 EQRRNYKHVFDGLYRVYKE 160
+QR+ YK FD + YK
Sbjct: 45 QQRQLYKRNFDTGLQEYKS 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.071
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 28/110 (25%)
Query: 154 LYRVYKEEGFQRL---FAG---------ASAA---SLRTAVMAV---GQIASYDQIKMRM 195
+ K +G FAG AS A S+ + V V G + +
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 196 LRSSYLKDDLGTHFLASLGSGLIATTLTQ-PLDVLKTRIMNAKPGQFKSI 244
RS+Y + ++ G +A + +Q L + R+ + G I
Sbjct: 1803 GRSNYG--------MIAINPGRVAASFSQEALQYVVERV-GKRTGWLVEI 1843
Score = 33.5 bits (76), Expect = 0.083
Identities = 34/188 (18%), Positives = 49/188 (26%), Gaps = 75/188 (39%)
Query: 27 CFTHPFDLLKVHLQTQQEGKVSVLGLTKLVLQREGVAGLYNGISASLTRQLTYSTARFAI 86
F LL TQ T Q A A
Sbjct: 1718 TFRSEKGLLS---ATQ---------FT----QP-----------ALT-------LMEKAA 1743
Query: 87 YEVGKQKAQEMSSDGKVTFLQTVMIAG-------AGGGIGGFFGVPT--DLVNVR---MQ 134
+E + S G + AG A + + + ++V R MQ
Sbjct: 1744 FED-------LKSKGLIP--ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 135 NDVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAVG-------QIAS 187
V R NY G+ + R+ A S +L+ V VG +I +
Sbjct: 1795 VAVPRDELGRSNY-----GMIAI----NPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 188 Y----DQI 191
Y Q
Sbjct: 1846 YNVENQQY 1853
Score = 31.9 bits (72), Expect = 0.29
Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 29/124 (23%)
Query: 166 LFAGASAASLRTAVMAVGQIASYDQIKMRMLRSSYLKDDLGTHFLASLGSG----LIATT 221
F G +R A+ ++ I L++ + ++ H + L AT
Sbjct: 1675 HFGGEKGKRIRENYSAM----IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 222 LTQP----LDVLKTRIMNAKPGQFKSIMDVVL-------YTAKLGPTGFFKGYF-----L 265
TQP ++ + +K G + D Y A +
Sbjct: 1731 FTQPALTLMEKAAFEDLKSK-GLIPA--DATFAGHSLGEYAALASLADVMS--IESLVEV 1785
Query: 266 AFAR 269
F R
Sbjct: 1786 VFYR 1789
Score = 30.0 bits (67), Expect = 1.2
Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 53/193 (27%)
Query: 62 VAGLYNGISASLTRQL----TYSTARFAIYEVGKQKAQ----EMSSDGKVTFLQTVMIAG 113
A L +L + Y TAR +K+ +G V I G
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL---VAIFG 161
Query: 114 AG-GGIGGFF-----------GVPTDLVNV---RMQNDVKIPPEQRRNYKHVFDGLYRVY 158
G G +F + DL+ + ++ + + + +
Sbjct: 162 -GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN------ 214
Query: 159 KEEGFQRLFAGASAAS----LRTA-----VMAVGQIASYDQIKMRMLRSS-YLKDDLGTH 208
S L + ++ V Q+A Y + + + +L ++
Sbjct: 215 ----ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY----VVTAKLLGFTPGELRSY 266
Query: 209 FLASLG--SGLIA 219
+ G GL+
Sbjct: 267 LKGATGHSQGLVT 279
Score = 29.2 bits (65), Expect = 2.1
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 42/133 (31%)
Query: 171 SAASLRTAVMAVGQI-----------ASYDQIKMRMLRS------SYLKDD-------LG 206
A S R ++ G + Q++ + + + DD L
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 207 THFLASLGSGLIATTLTQPLDVLKTRIMNAKPGQFKS-IM---DVVLYTAKLGPT----- 257
FL + S + + + Q VL + +F++ + D+ AKL
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCL-----TEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 258 ----GFFKGYFLA 266
K Y A
Sbjct: 117 VKTKELIKNYITA 129
Score = 27.7 bits (61), Expect = 6.8
Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 70/206 (33%)
Query: 10 KKVARWYFG-GLASAGAA-CFTHPFDLLKVHLQTQQEGK----VSVLGLTKLVLQR---- 59
+K F G+ A + P +L+ L+ EG +S+ LT+ +Q
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE-NNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 60 --------EGVA-GLYNG-----IS---ASLTRQLTYSTARFAIYEVGKQKAQEMSSDGK 102
+ V L NG +S SL L T R K KA +
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-LN-LTLR-------KAKAPSGLDQSR 406
Query: 103 VTFLQ-----------------TVMIAGAGGGIGGFFGVPTDLVNVRMQ---NDVKIPPE 142
+ F + + ++ A I DLV + D++IP
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLI------NKDLVKNNVSFNAKDIQIPV- 459
Query: 143 QRRNYKHVFDGL-YRVYKEEGFQRLF 167
Y FDG RV +R+
Sbjct: 460 ----Y-DTFDGSDLRVLSGSISERIV 480
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 30.3 bits (69), Expect = 0.64
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 68 GISASLTRQLTYSTARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIG 119
LT ++ +TA ++ E+G + V++ A GG G
Sbjct: 137 VKPEYLTLLVSGTTAYISLKELGGLSEGK-----------KVLVTAAAGGTG 177
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.85
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 157 VYKEEGFQRLFAGASAASLRTAVMA 181
+ K + +L+A SA +L A+ A
Sbjct: 22 LKKLQASLKLYADDSAPAL--AIKA 44
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 29.3 bits (66), Expect = 1.6
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 6/26 (23%)
Query: 244 IMDVVLY--TA---KLGPTGFFKGYF 264
I+DVV + GYF
Sbjct: 333 ILDVV-FNHVYKRENSPFEKTVPGYF 357
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 28.5 bits (64), Expect = 2.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 87 YEVGKQKAQEMSS-DGKVTFLQTVMIAGAGGGIG 119
E Q M DG+V V++ GAGGGIG
Sbjct: 12 LEAQTQGPGSMGVVDGRV-----VIVTGAGGGIG 40
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 28.6 bits (64), Expect = 3.1
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 92 QKAQEMSSDGKVTFLQTVMIAGAGGGIG 119
++ DG+V ++ GAG G+G
Sbjct: 10 SSDGKLRYDGRV-----AVVTGAGAGLG 32
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 27.6 bits (62), Expect = 4.9
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 11/44 (25%)
Query: 76 QLTYSTARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIG 119
Y T FA G+ +A E TV++ GA GGIG
Sbjct: 141 IANYHTMYFAYARRGQLRAGE-----------TVLVLGAAGGIG 173
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 27.5 bits (61), Expect = 5.6
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 70 SASLTRQLTYSTARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIGGF 121
+A+ L STA + + + V+I GA GG+G +
Sbjct: 204 AAAPG--LVNSTAYRQLVS---------RNGAGMKQGDNVLIWGASGGLGSY 244
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 27.5 bits (61), Expect = 5.9
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 70 SASLTRQLTYSTARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIGGF 121
+A L TA + + ++ G V+I GA GG+G +
Sbjct: 196 AAVSP--LCAGTAYRMLVSDRGAQMKQ----G-----DIVLIWGASGGLGSY 236
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 27.3 bits (61), Expect = 6.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
Query: 94 AQEMSSDGKVTFLQTVMIAGAGGGIG 119
A + DG+V V++ GAGGG+G
Sbjct: 2 ASPLRFDGRV-----VLVTGAGGGLG 22
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 27.4 bits (61), Expect = 6.3
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 81 TARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIGGF 121
TA AI +VG + + + V+I GA GG+G F
Sbjct: 166 TAWSAINKVGGLNDKNCTG-------KRVLILGASGGVGTF 199
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 27.1 bits (60), Expect = 7.6
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 85 AIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIGGFFGVPTDLVNVRMQNDVKIPPEQR 144
A+ + + + + + L + F + ++L++ R ++ +I E+R
Sbjct: 25 ALTKSQTDRLEVLLNPKDEISLNSGK---------PFRELESELLSRRKKDLQQIYAEER 75
Query: 145 RNY-KHVFDGLYRVYKEEGFQ 164
NY + + R + + GF
Sbjct: 76 ENYLGKLEREITRFFVDRGFL 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.394
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,453,551
Number of extensions: 265963
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 744
Number of HSP's successfully gapped: 43
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)