RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15385
(295 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 90.9 bits (224), Expect = 7e-22
Identities = 51/284 (17%), Positives = 101/284 (35%), Gaps = 21/284 (7%)
Query: 18 GGLASAGAACFTHPFDLLKVHLQTQQEGKV--------SVLGLTKLVLQREGVAGLYNGI 69
GG+A+A + P + +K+ LQ Q K ++ + + +G + G
Sbjct: 13 GGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGN 72
Query: 70 SASLTRQLTYSTARFAIYEVGKQ---KAQEMSSDGKVTFLQTVMIAGAGGGIGGFFGVPT 126
A++ R FA + KQ + F + GA G F P
Sbjct: 73 LANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL 132
Query: 127 DLVNVRMQNDVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAVGQIA 186
D R+ DV +R + + + + +++K +G + L+ G + + +
Sbjct: 133 DFARTRLAADV-GKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFG 191
Query: 187 SYDQIKMRMLRSSYLKDDLGTHFLASLGSGLIATTLTQPLDVLKTRIMN-----AKPGQF 241
YD + + + ++ + +A ++ P D ++ R+M +
Sbjct: 192 VYDT--AKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMY 249
Query: 242 KSIMDVVLYTAK-LGPTGFFKGYFLAFARLAPQTVLTFVFLEQL 284
+D AK GP FFKG + R V +++
Sbjct: 250 TGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAF-VLVLYDEI 292
Score = 55.5 bits (132), Expect = 2e-09
Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 11/185 (5%)
Query: 100 DGKVTFLQTVMIAGAGGGIGGFFGVPTDLVNVRMQND-VKIPPEQRRNYKHVFDGLYRVY 158
D ++FL+ + G I P + V + +Q + YK + D + R+
Sbjct: 1 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 60
Query: 159 KEEGFQRLFAGASAASLRTAVMAVGQIASYDQIKMRMLRSSYLKDD----LGTHFLASLG 214
KE+GF + G A +R A D+ K L + +
Sbjct: 61 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGA 120
Query: 215 SGLIATTLTQPLDVLKTRIM-----NAKPGQFKSIMDVVLYTAK-LGPTGFFKGYFLAFA 268
+G + PLD +TR+ A +F + + + K G G ++G+ ++
Sbjct: 121 AGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQ 180
Query: 269 RLAPQ 273
+
Sbjct: 181 GIIIY 185
>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol
dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 187
Score = 29.2 bits (64), Expect = 0.47
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 77 LTYSTARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIG 119
+ T+ + E G A QT++++GA G G
Sbjct: 11 MPGLTSLIGVQEKGHISAGSN---------QTMVVSGAAGACG 44
>d1sg7a1 a.239.1.1 (A:22-96) Putative cation transport regulator
ChaB {Escherichia coli [TaxId: 562]}
Length = 75
Score = 25.2 bits (55), Expect = 3.2
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 138 KIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAV 182
+P + YK F+ + YK++ +R A + + A AV
Sbjct: 15 VLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV 59
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 168
Score = 26.0 bits (56), Expect = 4.6
Identities = 6/75 (8%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 77 LTYSTARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIGGFFGVPTDLVN--VRMQ 134
L + + ++++ ++ L + G GVP + +
Sbjct: 79 LKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEV 138
Query: 135 NDVKIPPEQRRNYKH 149
+++ ++ ++
Sbjct: 139 VSIELDKDEIIAFRK 153
>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment)
{Bacillus stearothermophilus, newly identified strain as
yet unnamed [TaxId: 1422]}
Length = 408
Score = 26.0 bits (56), Expect = 6.2
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 133 MQNDVKIPPEQRRNYKHVFDGLYRVYKEEGFQRLFAGASAASLRTAVMAVGQIASYDQIK 192
+ I E ++ R Y + R F S A R A+ Q ++ D IK
Sbjct: 279 KRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE-RMAMNTPIQGSAADIIK 337
Query: 193 MRMLR--SSYLKDDLGTHFLA 211
M+ + ++ L H L
Sbjct: 338 KAMIDLNARLKEERLQAHLLL 358
>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase
{Streptomyces coelicolor [TaxId: 1902]}
Length = 257
Score = 25.5 bits (55), Expect = 7.2
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 5/20 (25%)
Query: 100 DGKVTFLQTVMIAGAGGGIG 119
D +V ++ GA GIG
Sbjct: 1 DSEV-----ALVTGATSGIG 15
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
[TaxId: 274]}
Length = 84
Score = 24.3 bits (53), Expect = 7.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 19 GLASAGAACFTHPFDLLKVHLQTQQEGKVSVLGLTKLVLQR 59
G A T + L HL+ ++ S GL +V QR
Sbjct: 20 GSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQR 60
>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus
subtilis [TaxId: 1423]}
Length = 167
Score = 25.3 bits (54), Expect = 7.6
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 11/46 (23%)
Query: 77 LTYSTARFAIYEVGKQKAQEMSSDGKVTFLQTVMIAGAGGGIGGFF 122
T + + + + G + +V++ GA GG+GG
Sbjct: 6 FTAALSVHRLEQNGLSPEKG-----------SVLVTGATGGVGGIA 40
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st
ketoreductase module {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 259
Score = 25.7 bits (55), Expect = 7.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 108 TVMIAGAGGGIG 119
TV++ G GG+G
Sbjct: 11 TVLVTGGTGGVG 22
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 249
Score = 25.3 bits (54), Expect = 9.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 99 SDGKVTFLQTVMIAGAGGGIGGFFGVPTDLV 129
+G++ + T ++A GG IG F +P+++V
Sbjct: 207 LNGELIGINTAILAPDGGNIGIGFAIPSNMV 237
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.394
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,038,646
Number of extensions: 45547
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 19
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)