Query psy15387
Match_columns 273
No_of_seqs 136 out of 1255
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 19:39:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810|consensus 100.0 4.7E-50 1E-54 349.1 33.3 262 8-273 1-270 (297)
2 COG5074 t-SNARE complex subuni 100.0 1.5E-32 3.2E-37 224.7 25.2 225 36-273 21-249 (280)
3 KOG0809|consensus 100.0 5.9E-32 1.3E-36 229.1 22.9 224 33-273 54-282 (305)
4 KOG0811|consensus 100.0 1.1E-30 2.5E-35 223.9 26.7 224 33-273 14-244 (269)
5 COG5325 t-SNARE complex subuni 99.9 1.6E-23 3.4E-28 176.6 26.5 223 31-273 29-259 (283)
6 cd00179 SynN Syntaxin N-termin 99.9 2.4E-22 5.1E-27 161.4 19.5 149 35-188 1-149 (151)
7 KOG0812|consensus 99.8 2.1E-15 4.5E-20 127.9 25.8 251 8-270 3-288 (311)
8 smart00503 SynN Syntaxin N-ter 99.7 3.6E-15 7.8E-20 114.4 15.6 116 34-154 2-117 (117)
9 PF05739 SNARE: SNARE domain; 99.6 4.1E-15 9E-20 101.5 10.6 63 206-268 1-63 (63)
10 PF00804 Syntaxin: Syntaxin; 99.5 2.5E-13 5.4E-18 101.5 14.1 103 34-139 1-103 (103)
11 cd00193 t_SNARE Soluble NSF (N 99.5 1.2E-13 2.6E-18 93.0 7.9 59 205-263 2-60 (60)
12 smart00397 t_SNARE Helical reg 99.4 3.5E-12 7.6E-17 87.4 9.3 63 201-263 4-66 (66)
13 PF14523 Syntaxin_2: Syntaxin- 99.2 1E-09 2.2E-14 82.1 14.7 100 45-155 1-100 (102)
14 KOG3202|consensus 97.6 0.037 8.1E-07 47.3 24.1 202 34-267 4-210 (235)
15 KOG3894|consensus 97.2 0.13 2.8E-06 45.4 22.7 76 198-273 221-296 (316)
16 KOG3065|consensus 93.6 0.39 8.5E-06 42.1 8.0 57 206-262 215-271 (273)
17 PF02346 Vac_Fusion: Chordopox 83.7 8.5 0.00019 25.3 6.6 44 210-253 2-45 (57)
18 PF09177 Syntaxin-6_N: Syntaxi 73.7 32 0.00069 25.0 11.6 92 37-136 2-94 (97)
19 PHA02675 ORF104 fusion protein 66.8 43 0.00093 23.7 6.8 40 214-253 35-74 (90)
20 PF04102 SlyX: SlyX; InterPro 65.9 39 0.00085 22.9 7.0 49 209-257 4-52 (69)
21 PF11598 COMP: Cartilage oligo 64.4 18 0.00038 22.6 4.0 25 213-237 5-29 (45)
22 PRK04325 hypothetical protein; 61.9 50 0.0011 22.8 8.3 46 211-256 11-56 (74)
23 KOG3065|consensus 61.0 50 0.0011 29.1 7.7 45 221-265 91-135 (273)
24 PF00957 Synaptobrevin: Synapt 59.4 60 0.0013 22.9 9.8 49 209-257 3-51 (89)
25 cd00193 t_SNARE Soluble NSF (N 57.2 47 0.001 21.0 8.4 56 213-268 3-58 (60)
26 PF05531 NPV_P10: Nucleopolyhe 56.9 64 0.0014 22.5 7.5 51 42-92 6-56 (75)
27 PRK00295 hypothetical protein; 56.3 61 0.0013 22.0 7.9 46 211-256 7-52 (68)
28 PF05508 Ran-binding: RanGTP-b 51.7 1.3E+02 0.0028 26.9 8.8 89 10-102 45-142 (302)
29 PHA03395 p10 fibrous body prot 51.2 89 0.0019 22.4 6.9 57 43-103 7-63 (87)
30 PRK00736 hypothetical protein; 50.6 77 0.0017 21.5 7.8 46 210-255 6-51 (68)
31 PHA03046 Hypothetical protein; 50.0 1.2E+02 0.0025 23.6 7.1 45 209-253 84-128 (142)
32 PF05739 SNARE: SNARE domain; 49.3 71 0.0015 20.7 7.8 54 216-269 4-57 (63)
33 PRK02793 phi X174 lysis protei 48.3 88 0.0019 21.5 7.9 48 209-256 8-55 (72)
34 PF01017 STAT_alpha: STAT prot 47.0 1.5E+02 0.0033 24.2 8.2 60 31-93 119-178 (182)
35 PF09164 VitD-bind_III: Vitami 46.5 51 0.0011 22.3 4.2 28 148-179 13-40 (68)
36 PF12325 TMF_TATA_bd: TATA ele 46.1 1.3E+02 0.0029 22.9 10.8 31 198-228 85-115 (120)
37 PF04912 Dynamitin: Dynamitin 44.8 2.6E+02 0.0055 25.8 11.6 44 9-52 215-258 (388)
38 KOG0811|consensus 43.3 2.3E+02 0.005 24.9 21.9 67 204-270 168-234 (269)
39 PF07106 TBPIP: Tat binding pr 42.9 1.7E+02 0.0038 23.4 12.8 68 31-103 70-137 (169)
40 PF12352 V-SNARE_C: Snare regi 41.2 1E+02 0.0022 20.3 10.0 55 210-264 9-63 (66)
41 PRK04406 hypothetical protein; 40.4 1.2E+02 0.0027 21.0 7.8 47 209-255 11-57 (75)
42 PF06419 COG6: Conserved oligo 40.3 2.5E+02 0.0054 27.8 9.9 33 33-65 31-63 (618)
43 PRK02119 hypothetical protein; 39.4 1.3E+02 0.0027 20.8 8.1 47 209-255 9-55 (73)
44 PRK11637 AmiB activator; Provi 36.5 3.6E+02 0.0078 25.2 28.4 34 214-247 210-243 (428)
45 PRK09343 prefoldin subunit bet 36.1 1.9E+02 0.0042 21.9 11.0 25 131-155 5-29 (121)
46 PF00435 Spectrin: Spectrin re 33.7 1.6E+02 0.0035 20.3 9.9 68 33-100 34-102 (105)
47 KOG3478|consensus 33.3 2.1E+02 0.0046 21.5 12.5 99 130-228 2-102 (120)
48 KOG3758|consensus 33.0 5E+02 0.011 25.7 12.0 34 33-66 64-97 (655)
49 PF08393 DHC_N2: Dynein heavy 32.2 3.5E+02 0.0075 24.8 9.1 129 32-180 196-329 (408)
50 TIGR00606 rad50 rad50. This fa 30.8 7.4E+02 0.016 27.1 25.4 18 35-52 824-841 (1311)
51 COG1315 Uncharacterized conser 30.8 4.2E+02 0.009 25.6 9.1 74 34-107 404-486 (543)
52 PF10267 Tmemb_cc2: Predicted 30.6 4.5E+02 0.0098 24.5 12.6 33 32-64 211-243 (395)
53 smart00397 t_SNARE Helical reg 30.4 1.5E+02 0.0032 18.9 9.7 58 209-266 5-62 (66)
54 PF15605 Toxin_52: Putative to 30.2 2.3E+02 0.005 21.0 7.3 59 35-97 42-100 (103)
55 PF01601 Corona_S2: Coronaviru 29.1 4.5E+02 0.0097 26.0 9.2 66 34-109 253-318 (610)
56 KOG0972|consensus 27.9 4.4E+02 0.0096 23.6 10.6 69 78-152 230-299 (384)
57 PRK00846 hypothetical protein; 27.8 2.2E+02 0.0047 19.9 7.9 49 209-257 13-61 (77)
58 PF04949 Transcrip_act: Transc 27.2 3.2E+02 0.007 21.7 13.3 59 46-104 55-117 (159)
59 PF10498 IFT57: Intra-flagella 27.1 5E+02 0.011 23.9 18.9 102 31-153 189-293 (359)
60 PF08653 DASH_Dam1: DASH compl 26.1 2E+02 0.0042 19.0 4.4 26 40-65 5-30 (58)
61 KOG3385|consensus 24.5 3.2E+02 0.0069 20.8 7.3 59 206-264 33-91 (118)
62 PF10496 Syntaxin-18_N: SNARE- 24.5 1.7E+02 0.0038 20.5 4.5 37 29-65 32-68 (87)
63 PF07432 Hc1: Histone H1-like 23.4 3.4E+02 0.0073 20.6 7.3 24 118-146 29-52 (123)
64 KOG0810|consensus 23.2 5.4E+02 0.012 23.0 23.5 71 196-266 200-270 (297)
65 PF13543 KSR1-SAM: SAM like do 23.1 3.6E+02 0.0078 20.9 6.3 34 31-64 65-98 (129)
66 PHA03386 P10 fibrous body prot 21.5 3.3E+02 0.0071 19.8 5.8 21 44-64 9-29 (94)
67 PF07432 Hc1: Histone H1-like 21.2 3.8E+02 0.0082 20.4 6.9 44 221-264 2-45 (123)
68 PF07889 DUF1664: Protein of u 21.0 3.9E+02 0.0086 20.6 8.4 31 208-245 95-125 (126)
69 PF15205 PLAC9: Placenta-speci 20.8 1.9E+02 0.0042 19.6 3.7 24 238-261 26-49 (74)
70 PF03310 Cauli_DNA-bind: Cauli 20.8 3.9E+02 0.0085 20.4 7.9 20 40-59 6-25 (121)
71 PF10428 SOG2: RAM signalling 20.7 7.3E+02 0.016 23.5 10.7 95 38-146 58-152 (445)
72 PF14523 Syntaxin_2: Syntaxin- 20.4 3.3E+02 0.0071 19.4 9.3 22 126-147 78-99 (102)
73 PF14644 DUF4456: Domain of un 20.2 5.1E+02 0.011 21.5 11.9 71 33-103 81-151 (208)
No 1
>KOG0810|consensus
Probab=100.00 E-value=4.7e-50 Score=349.15 Aligned_cols=262 Identities=36% Similarity=0.549 Sum_probs=238.9
Q ss_pred hhhhHHHHHhcC-cCCC---cccc---cccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHH
Q psy15387 8 YHQRIKALRVSC-VMDQ---CLQL---TITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLEL 80 (273)
Q Consensus 8 ~~DRl~el~~~~-~~~~---~~~~---~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i 80 (273)
|+|||+++.... +.+. +++. ....+..+..||..|+.|+..|..|...+.+|.++|.+++..|..+++++++|
T Consensus 1 M~d~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l 80 (297)
T KOG0810|consen 1 MNDRLSELLARSVSEDNELDDVEGHTGSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKL 80 (297)
T ss_pred CccccHHHHcCchhhcccccccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHH
Confidence 789999999986 3222 2221 12234789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 81 DARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRV 160 (273)
Q Consensus 81 ~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~ 160 (273)
+.++..+.+.++.|+..|+.+++.+...+ ..++. .+..|++++++..+.++|.++|..|+.+|..|++.++.+++||
T Consensus 81 ~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~--~~~~~-~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rq 157 (297)
T KOG0810|consen 81 ESLVDEIRRRARKIKTKLKALEKENEADE--TQNRS-SAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQ 157 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877654 21223 6678999999999999999999999999999999999999999
Q ss_pred HHhccC-CCCHHHHHHHHhCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy15387 161 VSIARA-EISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDII 239 (273)
Q Consensus 161 ~~i~~~-~~~dee~~~~~~~g~~~~~f~~~~~~~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~l 239 (273)
|.++++ .++|++++.++++|++ ++|.+.++.+++.++..+.++++||.+|.+||++|.|||+||.|||+||+.||+||
T Consensus 158 l~i~~~~~~~de~ie~~ie~g~~-~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmv 236 (297)
T KOG0810|consen 158 LFIVGGEETTDEEIEEMIESGGS-EVFTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMV 236 (297)
T ss_pred HhhhCCCcCChHHHHHHHHCCCh-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999 8899999999999988 88998888788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15387 240 DSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS 273 (273)
Q Consensus 240 D~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~rkk 273 (273)
|+||+||.+|.+||++|..+|++|.+||+++|||
T Consensus 237 d~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~ 270 (297)
T KOG0810|consen 237 DRIENNVENAVDYVEQGVDHLKKAVKYQKKARKW 270 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999998
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.5e-32 Score=224.72 Aligned_cols=225 Identities=26% Similarity=0.411 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc--hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhc
Q psy15387 36 DCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQD--ENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIE 113 (273)
Q Consensus 36 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~--~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~ 113 (273)
..|......|+.+++.++..+..+..+|..+|...... ..+++.|+..+.+...+-..++..++..++..-+
T Consensus 21 ~~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ih------ 94 (280)
T COG5074 21 VTFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIH------ 94 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccc------
Confidence 45666999999999999999999999999888766533 3688999999999999999999999888764211
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHhCCCchhhhhHHHHHH
Q psy15387 114 DGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTE 193 (273)
Q Consensus 114 ~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i~~~~~~dee~~~~~~~g~~~~~f~~~~~~~ 193 (273)
+--++.|-....++|.++++.|+.++..|++..+.+.+|||.|+.|.+|+++++..+.+.+..++|.++++..
T Consensus 95 -------l~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEdeve~aInd~nG~qvfsqalL~a 167 (280)
T COG5074 95 -------LANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATEDEVEAAINDVNGQQVFSQALLNA 167 (280)
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchHHHHHHhcccchHHHHHHHHHhc
Confidence 1237888899999999999999999999999999999999999999999999999998766669999999854
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15387 194 --TLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKAR 271 (273)
Q Consensus 194 --~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~r 271 (273)
.++++.+|.++++||.+|++||++|.||-+||+||+.||.+|.+++|.|+.|++.+..+|++|+.++.+|.+|.|++|
T Consensus 168 nr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaR 247 (280)
T COG5074 168 NRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAAR 247 (280)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy15387 272 MS 273 (273)
Q Consensus 272 kk 273 (273)
||
T Consensus 248 kk 249 (280)
T COG5074 248 KK 249 (280)
T ss_pred hc
Confidence 86
No 3
>KOG0809|consensus
Probab=100.00 E-value=5.9e-32 Score=229.12 Aligned_cols=224 Identities=21% Similarity=0.309 Sum_probs=179.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy15387 33 EYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPR--QDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEED 110 (273)
Q Consensus 33 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~--~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~ 110 (273)
..||.|.+.+++|...|..+...+++|.+.|.+.+ -|. |...-..+|+.++..|+++++.|...|+.+.....
T Consensus 54 ~lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n---- 128 (305)
T KOG0809|consen 54 GLPPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLN---- 128 (305)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----
Confidence 36999999999999999999999999999999866 443 33456889999999999999999999999987532
Q ss_pred hhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-hccCCCCHHHHHHHHhCCCchhhhh
Q psy15387 111 EIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRV--VS-IARAEISDEKLEELLEQGNYASIFN 187 (273)
Q Consensus 111 ~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~--~~-i~~~~~~dee~~~~~~~g~~~~~f~ 187 (273)
.++ +.+..+++|.+..++.+++.++.+|+..|..|.+.++.+..+. +. .+.|.....+.+.+ .+ ..|+
T Consensus 129 ---~~~-~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~----~~-~~~q 199 (305)
T KOG0809|consen 129 ---QLS-PSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDF----SD-RTFQ 199 (305)
T ss_pred ---CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhh----hh-hhHH
Confidence 122 5677789999999999999999999999999999998764432 11 11221111111111 01 2343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 188 ADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQ 267 (273)
Q Consensus 188 ~~~~~~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~q 267 (273)
+..+ .........+.+|++||.+|.+||.||++||+||+.||.+||++||||||||+++..+++.|..+|.||..||
T Consensus 200 e~ql---~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQ 276 (305)
T KOG0809|consen 200 EQQL---MLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQ 276 (305)
T ss_pred HHHH---HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHH
Confidence 2222 1234466778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCC
Q psy15387 268 KKARMS 273 (273)
Q Consensus 268 kk~rkk 273 (273)
|+++|.
T Consensus 277 k~~~k~ 282 (305)
T KOG0809|consen 277 KRNKKM 282 (305)
T ss_pred hcCCce
Confidence 999874
No 4
>KOG0811|consensus
Probab=100.00 E-value=1.1e-30 Score=223.90 Aligned_cols=224 Identities=24% Similarity=0.291 Sum_probs=180.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q psy15387 33 EYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEI 112 (273)
Q Consensus 33 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~ 112 (273)
..+.+|...+.+|...|..|+..+..|.+.+. .++++.|.+.++++++.....++++++.+...|+.+....
T Consensus 14 ~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~-~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~------- 85 (269)
T KOG0811|consen 14 EEPFDFQQLAQEIAANIQRINQQVLSLLRFLN-SLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLR------- 85 (269)
T ss_pred CCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHH-HcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 45678999999999999999999999999998 7899999999999999999999999999999999998642
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCC---HHHHHHHHhCCCchhhhhH
Q psy15387 113 EDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIA-RAEIS---DEKLEELLEQGNYASIFNA 188 (273)
Q Consensus 113 ~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i~-~~~~~---dee~~~~~~~g~~~~~f~~ 188 (273)
. ....+..+.+..+|.+.|..++++|+.+|....+..+.- .++ |...+ +++-+...+.+.......+
T Consensus 86 ---~-~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~-----~~a~~s~~s~~~~~~~~~~~~~~~~~~~~~~ 156 (269)
T KOG0811|consen 86 ---L-ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKIP-----MVARGSQNSQQLDEESPRVDELSNNGSQSQQ 156 (269)
T ss_pred ---c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccc-----ccccccccchhhhhhhhhhhhhhccchhhhh
Confidence 1 455688999999999999999999999999998888611 011 22222 1111111111111000111
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 189 D---IVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIV 265 (273)
Q Consensus 189 ~---~~~~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~ 265 (273)
. ...........+..+++|.+.|.+||..|.|||+||+|||.||++||++||+||+||++|.+||+.|..+|.+|.+
T Consensus 157 q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~ 236 (269)
T KOG0811|consen 157 QLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAK 236 (269)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0011113456788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCC
Q psy15387 266 YQKKARMS 273 (273)
Q Consensus 266 ~qkk~rkk 273 (273)
||+++|||
T Consensus 237 yq~~~~k~ 244 (269)
T KOG0811|consen 237 YQRKARKK 244 (269)
T ss_pred HHHHhcCc
Confidence 99999997
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.93 E-value=1.6e-23 Score=176.60 Aligned_cols=223 Identities=16% Similarity=0.211 Sum_probs=157.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy15387 31 YSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLL-SSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEE 109 (273)
Q Consensus 31 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l-~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~ 109 (273)
.+.++|.|......|...+..+...+..+.+-+.+.+ ..+.+...-.+.|..|...++..+..|.+.++.....+..
T Consensus 29 ~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s-- 106 (283)
T COG5325 29 DDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQS-- 106 (283)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3578999999999999999999999999999987633 2232333445667777777777777777666654433210
Q ss_pred hhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCHH-HHHHHHh-CCCch
Q psy15387 110 DEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSI----ARAEISDE-KLEELLE-QGNYA 183 (273)
Q Consensus 110 ~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i----~~~~~~de-e~~~~~~-~g~~~ 183 (273)
.....+|...|...+..++.+|+....-.+......-.. .+..+-++ +-+.... .|..
T Consensus 107 ---------------~~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l~eee~e~~~~~~~sq- 170 (283)
T COG5325 107 ---------------SFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLSSLGSQ- 170 (283)
T ss_pred ---------------HHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCchhhhhhhhhhhccchh-
Confidence 112466777777777777777776655544433222111 11111122 2222222 2333
Q ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 184 SIFNA-DIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262 (273)
Q Consensus 184 ~~f~~-~~~~~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~k 262 (273)
+..++ .+.. .+..+....+.+|.++|.+|+++|.||++||.||+.||.+||+++|+|||||+++.+|++.|..+|.+
T Consensus 171 ~~lqq~~l~~--ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~k 248 (283)
T COG5325 171 QTLQQQGLSN--EELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEK 248 (283)
T ss_pred hHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHH
Confidence 33333 3322 23455566789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC
Q psy15387 263 AIVYQKKARMS 273 (273)
Q Consensus 263 A~~~qkk~rkk 273 (273)
|..|||+++||
T Consensus 249 A~~hqrrt~k~ 259 (283)
T COG5325 249 APAHQRRTKKC 259 (283)
T ss_pred hHHHHhhhccc
Confidence 99999999986
No 6
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.90 E-value=2.4e-22 Score=161.44 Aligned_cols=149 Identities=41% Similarity=0.615 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcc
Q psy15387 35 HDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIED 114 (273)
Q Consensus 35 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~ 114 (273)
|++|+..|+.|+..|..|+.++..|.++|..+++++..++.++.+|+.+..+++.+++.|+..|+.|........ ..
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~---~~ 77 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNE---AL 77 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cc
Confidence 689999999999999999999999999999766665546789999999999999999999999999988654322 11
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHhCCCchhhhhH
Q psy15387 115 GHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNA 188 (273)
Q Consensus 115 ~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i~~~~~~dee~~~~~~~g~~~~~f~~ 188 (273)
+ ++++.|++++++.+|.++|..+|..|+.+|..|+++++.++.|++.|++|++||+|+++++++|++ ++|.+
T Consensus 78 ~-~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~~~~-~~~~~ 149 (151)
T cd00179 78 N-GSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLESGNS-EIFTS 149 (151)
T ss_pred C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHcCCh-hhhcC
Confidence 2 478899999999999999999999999999999999999999999999999999999999999977 66654
No 7
>KOG0812|consensus
Probab=99.75 E-value=2.1e-15 Score=127.95 Aligned_cols=251 Identities=16% Similarity=0.144 Sum_probs=166.2
Q ss_pred hhhhHHHHHhcCc------CCCccccc-c---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhH
Q psy15387 8 YHQRIKALRVSCV------MDQCLQLT-I---TYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMK 77 (273)
Q Consensus 8 ~~DRl~el~~~~~------~~~~~~~~-~---~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~ 77 (273)
.|||++||++-+. ..+.+.-. + .....-.+|...+..|...|..-...+.+|..|.++ .+.++|.-
T Consensus 3 ~rDRT~Ef~~~~~s~~~r~~~~~~~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKr--ks~f~Dr~-- 78 (311)
T KOG0812|consen 3 FRDRTSEFQAAVKSLKKRNATRGVNQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKR--KSLFDDRP-- 78 (311)
T ss_pred cchhhHHHHHHHHHHHHHhhccccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccCcc--
Confidence 3999999999864 11222111 1 112345599999999999999999999999999876 22333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy15387 78 LELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEER- 156 (273)
Q Consensus 78 ~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~- 156 (273)
-+|..|+--|++....+...|-++...... .++.++..-...-++++..|...+.++...|+.+-..-.+..++.
T Consensus 79 VeI~eLT~iikqdi~sln~~i~~Lqei~~~----~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k 154 (311)
T KOG0812|consen 79 VEIQELTFIIKQDITSLNSQIAQLQEIVKA----NGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVK 154 (311)
T ss_pred hhhHHHHHHHhcchHHHHHHHHHHHHHHHH----hccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 257778887887777777777777654321 222222111334578888999999999999998877655555543
Q ss_pred HHHHHHhcc-------CCCC----HHHHHHH-------------HhCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 157 IQRVVSIAR-------AEIS----DEKLEEL-------------LEQGNYASIFNADIVTETLEARKALEDVQIRHQELL 212 (273)
Q Consensus 157 ~~r~~~i~~-------~~~~----dee~~~~-------------~~~g~~~~~f~~~~~~~~~~~~~~l~~i~eR~~eI~ 212 (273)
-+++...++ |..+ ..-...+ ++.|++...-++++ .........+++|...+.
T Consensus 155 ~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~qqqQm----~ll~es~~Y~Q~R~~~~q 230 (311)
T KOG0812|consen 155 NRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQQQQM----ALLDESDEYVQERAKTMQ 230 (311)
T ss_pred hHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCCHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 233322222 1100 0000001 11122100001111 112233678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15387 213 KLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKA 270 (273)
Q Consensus 213 ~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~ 270 (273)
.||..|.||-.||.+||+||.+|||++.|||.||+.+..+++.|..+|.|.-..=.++
T Consensus 231 ~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSN 288 (311)
T KOG0812|consen 231 NIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSN 288 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999998875544443
No 8
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.67 E-value=3.6e-15 Score=114.43 Aligned_cols=116 Identities=30% Similarity=0.479 Sum_probs=102.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhc
Q psy15387 34 YHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIE 113 (273)
Q Consensus 34 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~ 113 (273)
.|+.|+..|++|+..|..|+.++..|..+|..+++.+..++.++.+++.+...++.+++.|+..|+.|........
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~---- 77 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENR---- 77 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc----
Confidence 5899999999999999999999999999999877666555789999999999999999999999999987654322
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 114 DGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCE 154 (273)
Q Consensus 114 ~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k 154 (273)
..++++.|++++++.+|.++|+.+|.+|+.+|..|++++|
T Consensus 78 -~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 78 -ASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred -ccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1236778999999999999999999999999999998764
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.63 E-value=4.1e-15 Score=101.50 Aligned_cols=63 Identities=41% Similarity=0.598 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 206 IRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQK 268 (273)
Q Consensus 206 eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qk 268 (273)
+|+++|..|+.+|.+|++||.+|+.+|.+||++||+|+.||+.|..++.+|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999999999999999999999999987
No 10
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.55 E-value=2.5e-13 Score=101.50 Aligned_cols=103 Identities=31% Similarity=0.493 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhc
Q psy15387 34 YHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIE 113 (273)
Q Consensus 34 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~ 113 (273)
+||.|++.|++|+..|..|...+.+|..+|.+.+..+.++...+.+|+.++.+|+.++..|+..|+.|+...... .+
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~---~~ 77 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS---EG 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---cc
Confidence 589999999999999999999999999999998888876668999999999999999999999999999875421 22
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy15387 114 DGHIPASLRIRKTQQSTTLHLLVEAI 139 (273)
Q Consensus 114 ~~~~~~e~ri~~~~~~~L~~~f~~~~ 139 (273)
.+.++++.|++++++..|+++|+++|
T Consensus 78 ~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 78 EEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp TT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 34458899999999999999999986
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.49 E-value=1.2e-13 Score=93.01 Aligned_cols=59 Identities=42% Similarity=0.601 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 205 QIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKA 263 (273)
Q Consensus 205 ~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA 263 (273)
++|+++|..|+.+|.+|+.||.+|+.+|.+||++||+|++|++.+..+++.|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999876
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.39 E-value=3.5e-12 Score=87.42 Aligned_cols=63 Identities=38% Similarity=0.516 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 201 LEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKA 263 (273)
Q Consensus 201 l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA 263 (273)
...+.+|+++|..|+.+|.+++.||.+|+.+|.+||++||+|++|++.+..++..|...|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 456889999999999999999999999999999999999999999999999999999999875
No 13
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=99.21 E-value=1e-09 Score=82.07 Aligned_cols=100 Identities=23% Similarity=0.353 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHHHHHH
Q psy15387 45 SRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIR 124 (273)
Q Consensus 45 i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e~ri~ 124 (273)
|...|+.|+..|..|+++.. .+|++.|.+.++++|+.++..++.+++.+...|+.+... . .. ....+..
T Consensus 1 is~~l~~in~~v~~l~k~~~-~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~-~--------~~-~~~~~~~ 69 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVN-QLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL-S--------SD-RSNDRQQ 69 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-HH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-H-------------HHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH-HhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--------hh-hhhhHHH
Confidence 57889999999999999998 689999999999999999999999999999999999864 1 11 4456778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 125 KTQQSTTLHLLVEAITEFNQEQLDYKEKCEE 155 (273)
Q Consensus 125 ~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~ 155 (273)
+.+..+|..+|..++++|+.+|..|.++.+.
T Consensus 70 k~~~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 70 KLQREKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998875
No 14
>KOG3202|consensus
Probab=97.59 E-value=0.037 Score=47.27 Aligned_cols=202 Identities=15% Similarity=0.139 Sum_probs=124.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHhhh
Q psy15387 34 YHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVK----KIAKKVSNSLKKLERSIKKEE 109 (273)
Q Consensus 34 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~----~~~~~i~~~l~~l~~~~~~~~ 109 (273)
.+..|+....++......++....+-..+... ++. ..+.++..+. .....+...+--+.+...
T Consensus 4 ~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~---~~~-------~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~--- 70 (235)
T KOG3202|consen 4 SEDPFFRVKNETLKLSEEIQGLYQRRSELLKD---TGS-------DAEELTSVLRRSIEEDLEDLDELISILERNPS--- 70 (235)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccc-------hhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcc---
Confidence 34568888888888888877777777766653 121 1222233222 222222222222222111
Q ss_pred hhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHh-CCCchhhhhH
Q psy15387 110 DEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLE-QGNYASIFNA 188 (273)
Q Consensus 110 ~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i~~~~~~dee~~~~~~-~g~~~~~f~~ 188 (273)
..+....|.+.|+..+..+..++..+-..|.. ..+... .-|. ...+++..+...+.+-. .|.. +.+
T Consensus 71 ---~~~ide~El~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~----~~r~-~l~~~~~~~~~~~~~~~~~~~D---~v~ 137 (235)
T KOG3202|consen 71 ---KFGIDEFELSRRRRFIDNLRTQLRQMKSKMAM--SGFANS----NIRD-ILLGPEKSPNLDEAMSRASGLD---NVQ 137 (235)
T ss_pred ---cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccc----cchh-hhcCCCCCCchhhhHHHhhccC---cHH
Confidence 11123677889999999999999888887776 111111 1111 12344443321111111 1111 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 189 DIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQ 267 (273)
Q Consensus 189 ~~~~~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~q 267 (273)
.........+++-...+..|+.+|.-+..+=..|+.=+.+||.+||.-++-++.+......+...|.+-.+.+
T Consensus 138 ------~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~ 210 (235)
T KOG3202|consen 138 ------EIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMA 210 (235)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1123334556777889999999999999999999999999999999999999999999999999998877733
No 15
>KOG3894|consensus
Probab=97.23 E-value=0.13 Score=45.40 Aligned_cols=76 Identities=22% Similarity=0.198 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15387 198 RKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS 273 (273)
Q Consensus 198 ~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~rkk 273 (273)
+..+....+--+++++|++.|.|+..|=.-++.=|-+|..-||.|-.++..|..|++.|++.|.+|.....+.|+|
T Consensus 221 ~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~ 296 (316)
T KOG3894|consen 221 QRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVF 296 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhH
Confidence 4445666677789999999999999999999999999999999999999999999999999999999988877765
No 16
>KOG3065|consensus
Probab=93.60 E-value=0.39 Score=42.07 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 206 IRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262 (273)
Q Consensus 206 eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~k 262 (273)
+=...+.+|-..+..|..|-.||+.-|..|.+.||+|+++|+.....|..++.-+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 455678889999999999999999999999999999999999999999998877654
No 17
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=83.72 E-value=8.5 Score=25.30 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy15387 210 ELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAV 253 (273)
Q Consensus 210 eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v 253 (273)
+++.++.-+..|-..|.....--...++.+++.|.+++....++
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999876654
No 18
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=73.70 E-value=32 Score=24.98 Aligned_cols=92 Identities=13% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcc-C
Q psy15387 37 CFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIED-G 115 (273)
Q Consensus 37 ~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~-~ 115 (273)
-|+.-.+++...|..+++.......+... ++ ....+..+..++...+..+...|..|.+.+.-.+..+.. +
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~---~~-----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~ 73 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRSD---TS-----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFN 73 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTH---CC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc---CC-----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC
Confidence 37778888888888877776666555432 11 445566777777777788888888887766543311100 1
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q psy15387 116 HIPASLRIRKTQQSTTLHLLV 136 (273)
Q Consensus 116 ~~~~e~ri~~~~~~~L~~~f~ 136 (273)
-+..+..-|+..+..+...+.
T Consensus 74 l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 74 LSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 123444445555554444443
No 19
>PHA02675 ORF104 fusion protein; Provisional
Probab=66.83 E-value=43 Score=23.72 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy15387 214 LEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAV 253 (273)
Q Consensus 214 Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v 253 (273)
||.-+..|-++|..+..-...=|+.|+|.|.+.+....++
T Consensus 35 le~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 35 VEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555668899999999999999999999998766543
No 20
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.89 E-value=39 Score=22.94 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETAR 257 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~ 257 (273)
.-|..||..+.-.-....+|+..|..|...||+....+......+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577788888888888888999999999999999998888877776544
No 21
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=64.43 E-value=18 Score=22.59 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q psy15387 213 KLEKSIQELRDLFVEMALLVEQQGD 237 (273)
Q Consensus 213 ~Ie~sI~eL~~iF~dla~LV~~QGe 237 (273)
.|...+.++++++.+|-.++.+|=.
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~k 29 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIK 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999988743
No 22
>PRK04325 hypothetical protein; Provisional
Probab=61.93 E-value=50 Score=22.83 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy15387 211 LLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETA 256 (273)
Q Consensus 211 I~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a 256 (273)
|..||..+.-.-....+|+..|.+|+..|+.....+....+.+...
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888889999999999999999998887777666543
No 23
>KOG3065|consensus
Probab=60.99 E-value=50 Score=29.09 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 221 LRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIV 265 (273)
Q Consensus 221 L~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~ 265 (273)
....=.-...+..+||+.|++||.|+.........|..+|..=..
T Consensus 91 ~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 91 SREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 333344455667799999999999999999999999888865443
No 24
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=59.41 E-value=60 Score=22.92 Aligned_cols=49 Identities=12% Similarity=0.342 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETAR 257 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~ 257 (273)
+.+.+|...+.++..+..+=-.-+.+-|+-|+.++...+.-...++.-.
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~ 51 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHH
Confidence 4578889999999999988888888999999999998776666555443
No 25
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=57.24 E-value=47 Score=20.98 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 213 KLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQK 268 (273)
Q Consensus 213 ~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qk 268 (273)
+-.+.+..|.....+|..|..+=|.+|..=..-++....++..+...+..|.+.=+
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677888888888888888888888888888888888999988888888876543
No 26
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=56.94 E-value=64 Score=22.47 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHH
Q psy15387 42 VEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAK 92 (273)
Q Consensus 42 ~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~ 92 (273)
.-.|+..|..+..++..|+......-....+-.++..+++.+...+..+-.
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888764322222334677777777766544443
No 27
>PRK00295 hypothetical protein; Provisional
Probab=56.26 E-value=61 Score=22.00 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy15387 211 LLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETA 256 (273)
Q Consensus 211 I~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a 256 (273)
|..||-.+.-.-+...+|+..|..|...||.....+......+...
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888889999999999999999999998888777766554
No 28
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=51.69 E-value=1.3e+02 Score=26.91 Aligned_cols=89 Identities=11% Similarity=0.199 Sum_probs=59.7
Q ss_pred hhHHHHHhcCc-----CCCcccc---c-ccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHH
Q psy15387 10 QRIKALRVSCV-----MDQCLQL---T-ITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLEL 80 (273)
Q Consensus 10 DRl~el~~~~~-----~~~~~~~---~-~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i 80 (273)
.||..||.+.. ..|.+.+ . ...++.++.-+..+.+++..|..+...++.+...... +......+..+
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e~----~~~~~~~~~~i 120 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTKDLRREIDSFDERLEEAAEKEEL----SKSSENQKESI 120 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----ccCcchhHHHH
Confidence 46666666643 2343222 2 3457899999999999999999999999988876553 22233455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15387 81 DARTETVKKIAKKVSNSLKKLE 102 (273)
Q Consensus 81 ~~l~~~i~~~~~~i~~~l~~l~ 102 (273)
..+...++.+...|...+==|+
T Consensus 121 ~~V~~~ik~LL~rId~aiPlin 142 (302)
T PF05508_consen 121 KKVERYIKDLLARIDDAIPLIN 142 (302)
T ss_pred HHHHHHHHHHHHHHHhhcchHH
Confidence 7777777777777666654443
No 29
>PHA03395 p10 fibrous body protein; Provisional
Probab=51.18 E-value=89 Score=22.40 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 43 EDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLER 103 (273)
Q Consensus 43 ~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~ 103 (273)
-.|+..|..+...|..|+.....+-....+-.++..+++.+...+. .+...+..+..
T Consensus 7 l~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Lt----ti~tkv~~I~d 63 (87)
T PHA03395 7 LLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLD----TISSAVDNITD 63 (87)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHH----HHHHHHHHHHH
Confidence 3577788888888888877766533333334567777887777653 34444444443
No 30
>PRK00736 hypothetical protein; Provisional
Probab=50.59 E-value=77 Score=21.49 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy15387 210 ELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVET 255 (273)
Q Consensus 210 eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~ 255 (273)
.|..||..+.-.-....+|+..|..|...||.....+....+....
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888999999999999999999888877776654
No 31
>PHA03046 Hypothetical protein; Provisional
Probab=49.97 E-value=1.2e+02 Score=23.56 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAV 253 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v 253 (273)
-+|+.+.--+.-|-.+|+....-...=|..|+|+|.+++....++
T Consensus 84 ~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 84 MDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888999999999999999999999999998765443
No 32
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=49.32 E-value=71 Score=20.69 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387 216 KSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKK 269 (273)
Q Consensus 216 ~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk 269 (273)
..|..|..-..+|..|...=|..|+.=..-++....++..+...|.+|.+.=++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666666666666666554443
No 33
>PRK02793 phi X174 lysis protein; Provisional
Probab=48.30 E-value=88 Score=21.48 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETA 256 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a 256 (273)
..|..||-.+.=.-+...+|+..|..|...||.....+..-.+.....
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357778888888888888888999999999999888887776666543
No 34
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=47.05 E-value=1.5e+02 Score=24.17 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=36.4
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHH
Q psy15387 31 YSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKK 93 (273)
Q Consensus 31 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~ 93 (273)
++..++..-..++.+...|..+...+..+..+..++ +.+.+.+......+...++.+++.
T Consensus 119 ~~~~LD~LQ~wfe~LAe~l~qlrqqlk~l~~l~~k~---~~~~d~~~~~~~~L~~~v~~ll~~ 178 (182)
T PF01017_consen 119 FDSSLDQLQNWFESLAEILWQLRQQLKKLEELQQKL---TYENDPIPDQLPQLNERVTELLKN 178 (182)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----TT-THHHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCchhhhHHHHHHHHHHHHHH
Confidence 355566666666666677999999999999998763 222334555556666666555543
No 35
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=46.50 E-value=51 Score=22.28 Aligned_cols=28 Identities=29% Similarity=0.587 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHhC
Q psy15387 148 DYKEKCEERIQRVVSIARAEISDEKLEELLEQ 179 (273)
Q Consensus 148 ~y~~~~k~~~~r~~~i~~~~~~dee~~~~~~~ 179 (273)
+|++++.++++. --|++++.++.++++.
T Consensus 13 EyKKrL~e~l~~----k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 13 EYKKRLAERLRA----KLPDATPTELKELVEK 40 (68)
T ss_dssp HHHHHHHHHHHH----H-TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HCCCCCHHHHHHHHHH
Confidence 566666665443 3588999999998863
No 36
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.12 E-value=1.3e+02 Score=22.92 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 198 RKALEDVQIRHQELLKLEKSIQELRDLFVEM 228 (273)
Q Consensus 198 ~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dl 228 (273)
...|..+=++.+++.+|...|.||.+||++.
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999864
No 37
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.82 E-value=2.6e+02 Score=25.84 Aligned_cols=44 Identities=7% Similarity=0.116 Sum_probs=24.0
Q ss_pred hhhHHHHHhcCcCCCcccccccCCccHHHHHHHHHHHHHHHHHH
Q psy15387 9 HQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANI 52 (273)
Q Consensus 9 ~DRl~el~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~i~~i 52 (273)
--||..|.+..+.+++....+..+......+..++.+...|..|
T Consensus 215 E~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL 258 (388)
T PF04912_consen 215 EKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLL 258 (388)
T ss_pred HHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhc
Confidence 45888888887765543233332323444555555555555544
No 38
>KOG0811|consensus
Probab=43.29 E-value=2.3e+02 Score=24.90 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15387 204 VQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKA 270 (273)
Q Consensus 204 i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~ 270 (273)
+..=..-|.+=+.+|..|..=..|+..++.+=|.|+..=-.-|+...++|+.+..+.+.|...=+|+
T Consensus 168 ~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA 234 (269)
T KOG0811|consen 168 LEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKA 234 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777889999999999999999999999999999999999999999999999998776654
No 39
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.92 E-value=1.7e+02 Score=23.35 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=47.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 31 YSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLER 103 (273)
Q Consensus 31 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~ 103 (273)
++.-+..+-..+..++..+..+...+..|..-...+...|. ...+...|..+..++ ..+...|..|..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~----~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-NEELREEIEELEEEI----EELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 35568888888999999999999999988888775555554 345666666666654 444445555544
No 40
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=41.16 E-value=1e+02 Score=20.26 Aligned_cols=55 Identities=7% Similarity=0.093 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 210 ELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAI 264 (273)
Q Consensus 210 eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~ 264 (273)
-|..-...+.|..++=.+...-...|++.|.++...+..+..++..+..-|..-.
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444445555666666677777889999999999999999999999988886643
No 41
>PRK04406 hypothetical protein; Provisional
Probab=40.35 E-value=1.2e+02 Score=20.95 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVET 255 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~ 255 (273)
.-|..||..+.-.-....+|+..|..|...||.....+....+.+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777888888888888888899999999999888888777666644
No 42
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=40.34 E-value=2.5e+02 Score=27.83 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387 33 EYHDCFMDTVEDSRALIANIQEHVKAMRNLHSD 65 (273)
Q Consensus 33 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~ 65 (273)
..-..|++....|...|..+.+.++.|......
T Consensus 31 ~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~ 63 (618)
T PF06419_consen 31 KINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQ 63 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888899999999999999998888764
No 43
>PRK02119 hypothetical protein; Provisional
Probab=39.38 E-value=1.3e+02 Score=20.76 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVET 255 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~ 255 (273)
..|..||..+.-.-+...+|+..|..|...||.....+....+.+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888888889999999999999998888877766654
No 44
>PRK11637 AmiB activator; Provisional
Probab=36.46 E-value=3.6e+02 Score=25.15 Aligned_cols=34 Identities=9% Similarity=0.191 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy15387 214 LEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVM 247 (273)
Q Consensus 214 Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~ 247 (273)
|+....+-......|..-...+...|...+....
T Consensus 210 L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~ 243 (428)
T PRK11637 210 LEQARNERKKTLTGLESSLQKDQQQLSELRANES 243 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444333
No 45
>PRK09343 prefoldin subunit beta; Provisional
Probab=36.11 E-value=1.9e+02 Score=21.90 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 131 TLHLLVEAITEFNQEQLDYKEKCEE 155 (273)
Q Consensus 131 L~~~f~~~~~~f~~~q~~y~~~~k~ 155 (273)
|-..|...+..|+.+|..+......
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q 29 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQ 29 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888876665544
No 46
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=33.67 E-value=1.6e+02 Score=20.28 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCcchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 33 EYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSS-PRQDENMKLELDARTETVKKIAKKVSNSLKK 100 (273)
Q Consensus 33 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~-~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~ 100 (273)
..++..+.....+...|......++.|...-..+... |.+.+.++..+..+......+...+...-..
T Consensus 34 ~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~ 102 (105)
T PF00435_consen 34 EELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777776654333 2333456666666665555555554444433
No 47
>KOG3478|consensus
Probab=33.25 E-value=2.1e+02 Score=21.52 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHhCCCchhhhhHHHHH-HHHHHHHHH-HHHHHH
Q psy15387 130 TTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVT-ETLEARKAL-EDVQIR 207 (273)
Q Consensus 130 ~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i~~~~~~dee~~~~~~~g~~~~~f~~~~~~-~~~~~~~~l-~~i~eR 207 (273)
.|-++|....++|+.+|....+....+-+--.++..+..--+|++-+-++.+.-..+..-+.. +...++... .-++==
T Consensus 2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Confidence 356788999999999999877776654322222222223334454432222111112222221 112222221 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15387 208 HQELLKLEKSIQELRDLFVEM 228 (273)
Q Consensus 208 ~~eI~~Ie~sI~eL~~iF~dl 228 (273)
..||..+|.+|.++..=|...
T Consensus 82 ~~Eikr~e~~i~d~q~e~~k~ 102 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQEEFEKQ 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888877665544
No 48
>KOG3758|consensus
Probab=33.05 E-value=5e+02 Score=25.74 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15387 33 EYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDL 66 (273)
Q Consensus 33 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~ 66 (273)
..-.+|+..+++|...+..+++.+..|..-..+.
T Consensus 64 ~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l 97 (655)
T KOG3758|consen 64 KINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKL 97 (655)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999988877653
No 49
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=32.20 E-value=3.5e+02 Score=24.81 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=63.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy15387 32 SEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDL--LSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEE 109 (273)
Q Consensus 32 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~--l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~ 109 (273)
+.+...|...+......|..+..-++.+...++.. |......+.++.++..-...+ ..|......+-..+..
T Consensus 196 S~~~~~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if~~~di~~~lp~e~~~F----~~i~~~~~~i~~~~~~-- 269 (408)
T PF08393_consen 196 SPFVKPFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIFSSSDIKKQLPKEAKKF----SSIDKEWRSIMKRAQK-- 269 (408)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHCCCTHHHHHHH----HHHHHHHHHHHHHHHC--
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH----HHcChHHHHHHHHHHh--
Confidence 45566788888888888888888888777777652 222222223444444333333 3333333333332211
Q ss_pred hhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHhCC
Q psy15387 110 DEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQE---QLDYKEKCEERIQRVVSIARAEISDEKLEELLEQG 180 (273)
Q Consensus 110 ~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~---q~~y~~~~k~~~~r~~~i~~~~~~dee~~~~~~~g 180 (273)
+|. -...... ..+...|..+...+..+ -..|.+..|..-+|-|. .+++++=+++..+
T Consensus 270 ----~~~-v~~~~~~----~~~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfyF-----lsd~eLl~ils~~ 329 (408)
T PF08393_consen 270 ----DPN-VLSVCSN----PDLLEKLESINESLEKIQKSLNDYLESKREAFPRFYF-----LSDDELLEILSQS 329 (408)
T ss_dssp ----T-C-CHHHCCS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHH-----C-HHHHHHHHHTT
T ss_pred ----Ccc-hhHHhhH----hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccceee-----cCcHHHHHHHHcC
Confidence 011 1111100 22333444444444444 34566666665555544 4677776666655
No 50
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.80 E-value=7.4e+02 Score=27.05 Aligned_cols=18 Identities=0% Similarity=0.040 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15387 35 HDCFMDTVEDSRALIANI 52 (273)
Q Consensus 35 ~~~f~~~~~~i~~~i~~i 52 (273)
+.++-..+..+...+..+
T Consensus 824 ~~ele~ei~~~~~el~~l 841 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTV 841 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 51
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=30.79 E-value=4.2e+02 Score=25.62 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------c--CCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387 34 YHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLL-------S--SPRQDENMKLELDARTETVKKIAKKVSNSLKKLERS 104 (273)
Q Consensus 34 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l-------~--~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 104 (273)
.-|+|++....+...|......++.|..+..... . -+.+..+....++...-.....+.+++..+..++..
T Consensus 404 ~dpe~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~ 483 (543)
T COG1315 404 MDPEIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEE 483 (543)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666555555555554433211 1 122334666666666666667778888888888776
Q ss_pred hHh
Q psy15387 105 IKK 107 (273)
Q Consensus 105 ~~~ 107 (273)
+..
T Consensus 484 le~ 486 (543)
T COG1315 484 LEV 486 (543)
T ss_pred Hhh
Confidence 543
No 52
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.60 E-value=4.5e+02 Score=24.52 Aligned_cols=33 Identities=3% Similarity=0.149 Sum_probs=26.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 32 SEYHDCFMDTVEDSRALIANIQEHVKAMRNLHS 64 (273)
Q Consensus 32 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~ 64 (273)
+..+..+++.+.+|+.....|...++.|+..+.
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~ 243 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQYQ 243 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888889999999999988888887443
No 53
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=30.39 E-value=1.5e+02 Score=18.87 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVY 266 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~ 266 (273)
..+.+-...|..|.....++..|..+=|.+|+.=...++....++..+...+..|.+.
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~ 62 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777776777777777777777777777654
No 54
>PF15605 Toxin_52: Putative toxin 52
Probab=30.17 E-value=2.3e+02 Score=20.98 Aligned_cols=59 Identities=8% Similarity=0.222 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHH
Q psy15387 35 HDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNS 97 (273)
Q Consensus 35 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~ 97 (273)
--.+++++.+++....-|......|+.. |+.|.-+...++-+..-..+.+..+..|...
T Consensus 42 ~GgywdHlqEm~da~~GL~n~~~~le~~----L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~ 100 (103)
T PF15605_consen 42 DGGYWDHLQEMQDAYRGLVNRKRTLEGS----LKNPNLSGRTRELLQSKLNEANNYLDKIEDF 100 (103)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999988877777766666654 5556545556666666555655555655543
No 55
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=29.09 E-value=4.5e+02 Score=25.95 Aligned_cols=66 Identities=9% Similarity=0.173 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy15387 34 YHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEE 109 (273)
Q Consensus 34 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~ 109 (273)
....|.+....|...+......+.+++.-.+. --..|+.|+......|.+|...|+.+-..++..+
T Consensus 253 iA~sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~----------q~~aL~~L~~qL~nnF~AISssI~dIy~RLd~le 318 (610)
T PF01601_consen 253 IANSFNKAIGNIQLGFTTTASALNKIQDVVNQ----------QGQALNQLTSQLSNNFGAISSSIQDIYNRLDQLE 318 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888777663 2334666666666667777777776655555443
No 56
>KOG0972|consensus
Probab=27.93 E-value=4.4e+02 Score=23.55 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-hhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 78 LELDARTETVKKIAKKVSNSLKKLERSIKKE-EDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEK 152 (273)
Q Consensus 78 ~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~-~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~ 152 (273)
.+++.+...|-+.+..+..-|++|..++... ++ - ++-.+-..|++..|..+|+.+......++..|...
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEk-----I-~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEK-----I-ASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666666665543321 10 0 11111235555566555555555555555555433
No 57
>PRK00846 hypothetical protein; Provisional
Probab=27.76 E-value=2.2e+02 Score=19.95 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETAR 257 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~ 257 (273)
..|..||-.+.-.-....+|+..|..|...||+....+..-.+..+.+.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467777777777778888888888999999998888887777666543
No 58
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=27.17 E-value=3.2e+02 Score=21.72 Aligned_cols=59 Identities=15% Similarity=0.371 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hccCCCc--chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387 46 RALIANIQEHVKAMRNLHSD--LLSSPRQ--DENMKLELDARTETVKKIAKKVSNSLKKLERS 104 (273)
Q Consensus 46 ~~~i~~i~~~i~~L~~l~~~--~l~~~~~--~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 104 (273)
...|..+......|..+... .+..|.- -..+|..|+....+++.+.+.|+..=+.+..-
T Consensus 55 q~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykea 117 (159)
T PF04949_consen 55 QAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEA 117 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444444455444433 2223321 12456666666666666666655555555443
No 59
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.07 E-value=5e+02 Score=23.87 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=47.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcch---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy15387 31 YSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDE---NMKLELDARTETVKKIAKKVSNSLKKLERSIKK 107 (273)
Q Consensus 31 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~---~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~ 107 (273)
+...+.+|--.++.+...|. + ... .|.. .--+++..+...|...+..++..|..|...+..
T Consensus 189 s~vd~~eWklEvERV~PqLK-v--------------~~~-~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~ 252 (359)
T PF10498_consen 189 SKVDPAEWKLEVERVLPQLK-V--------------TIR-ADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK 252 (359)
T ss_pred ccCCHHHHHHHHHHHhhhhe-e--------------ecc-CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34567777777777766652 1 000 0111 111344444555555555555555555544332
Q ss_pred hhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 108 EEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKC 153 (273)
Q Consensus 108 ~~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~ 153 (273)
.-.+ - ..-.+.-.+++..|...|..+..++..++..|.+.-
T Consensus 253 ~lek----I-~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s 293 (359)
T PF10498_consen 253 TLEK----I-ESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQAS 293 (359)
T ss_pred HHHH----H-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1100 0 000112345555566666666666666666665544
No 60
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.06 E-value=2e+02 Score=18.99 Aligned_cols=26 Identities=4% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387 40 DTVEDSRALIANIQEHVKAMRNLHSD 65 (273)
Q Consensus 40 ~~~~~i~~~i~~i~~~i~~L~~l~~~ 65 (273)
....++...+..+..++..|...|..
T Consensus 5 ~~f~eL~D~~~~L~~n~~~L~~ihes 30 (58)
T PF08653_consen 5 PQFAELSDSMETLDKNMEQLNQIHES 30 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888774
No 61
>KOG3385|consensus
Probab=24.51 E-value=3.2e+02 Score=20.76 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 206 IRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAI 264 (273)
Q Consensus 206 eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~ 264 (273)
|=++.+..|..-|.-|..+-.|+..-|..|..+||.++...+.+.......-..++.-.
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~a 91 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMA 91 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHH
Confidence 34456778888899999999999999999999999999999999999888877776543
No 62
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=24.48 E-value=1.7e+02 Score=20.46 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=32.1
Q ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387 29 ITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSD 65 (273)
Q Consensus 29 ~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~ 65 (273)
..+......|+..+..|...|..|..-+.+++.-+-.
T Consensus 32 ~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~YL~ 68 (87)
T PF10496_consen 32 RPKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAYLS 68 (87)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445788999999999999999999999999988753
No 63
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=23.44 E-value=3.4e+02 Score=20.64 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 118 PASLRIRKTQQSTTLHLLVEAITEFNQEQ 146 (273)
Q Consensus 118 ~~e~ri~~~~~~~L~~~f~~~~~~f~~~q 146 (273)
.+..|.|+. ..++..++++|+..-
T Consensus 29 AAGtRaRK~-----sleLeKLaKefRKeS 52 (123)
T PF07432_consen 29 AAGTRARKA-----SLELEKLAKEFRKES 52 (123)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 555677654 346677777777654
No 64
>KOG0810|consensus
Probab=23.20 E-value=5.4e+02 Score=22.96 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 196 EARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVY 266 (273)
Q Consensus 196 ~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~ 266 (273)
+.+.-..+|..=++.|.+|.+--.++..|...=+.+|..=..-+-+=..+|+.+.+++.+|...=++|++.
T Consensus 200 Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~ 270 (297)
T KOG0810|consen 200 EIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKW 270 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34555667777777888888888888888888888887777777777788888888888887777777654
No 65
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=23.10 E-value=3.6e+02 Score=20.88 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=23.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 31 YSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHS 64 (273)
Q Consensus 31 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~ 64 (273)
+...+..|+.-|.--...|..|-.....|+.+..
T Consensus 65 ~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Lle 98 (129)
T PF13543_consen 65 SYPSLRQWLRVVGLRPESIQAILSKVLTLEALLE 98 (129)
T ss_pred cCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHh
Confidence 3456778888887777777777666666666654
No 66
>PHA03386 P10 fibrous body protein; Provisional
Probab=21.55 E-value=3.3e+02 Score=19.80 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15387 44 DSRALIANIQEHVKAMRNLHS 64 (273)
Q Consensus 44 ~i~~~i~~i~~~i~~L~~l~~ 64 (273)
.|+..|..+.+.|..|+....
T Consensus 9 ~Ir~dIkavd~KVdaLQ~qV~ 29 (94)
T PHA03386 9 QILDAVQEVDTKVDALQTQLN 29 (94)
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 355555555555555555544
No 67
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=21.18 E-value=3.8e+02 Score=20.38 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 221 LRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAI 264 (273)
Q Consensus 221 L~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~ 264 (273)
|.++|..|..||..=..-++.+|...-.|-..+..|..+|.+.-
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLa 45 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLA 45 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 56777777777775555556788888888899999998888753
No 68
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.03 E-value=3.9e+02 Score=20.55 Aligned_cols=31 Identities=13% Similarity=0.381 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15387 208 HQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHH 245 (273)
Q Consensus 208 ~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~N 245 (273)
..++..|-..+..||.++..| +.-|+.||+|
T Consensus 95 ~~dv~~i~~dv~~v~~~V~~L-------e~ki~~ie~~ 125 (126)
T PF07889_consen 95 REDVSQIGDDVDSVQQMVEGL-------EGKIDEIEEK 125 (126)
T ss_pred HhhHHHHHHHHHHHHHHHHHH-------HHHHHHHhcC
Confidence 344445555555555444444 4455566554
No 69
>PF15205 PLAC9: Placenta-specific protein 9
Probab=20.81 E-value=1.9e+02 Score=19.62 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 238 IIDSIEHHVMEAGEAVETARVQTK 261 (273)
Q Consensus 238 ~lD~Ie~Nv~~a~~~v~~a~~~L~ 261 (273)
-||-||.-|+.+.++.+.-+.-|-
T Consensus 26 RLdviEe~veKTVEhLeaEvk~LL 49 (74)
T PF15205_consen 26 RLDVIEETVEKTVEHLEAEVKGLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888876555443
No 70
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=20.77 E-value=3.9e+02 Score=20.43 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15387 40 DTVEDSRALIANIQEHVKAM 59 (273)
Q Consensus 40 ~~~~~i~~~i~~i~~~i~~L 59 (273)
..+..+...+..+.+.+..|
T Consensus 6 kEi~~l~~~lk~~~~~i~ai 25 (121)
T PF03310_consen 6 KEISELIQELKKIESDIKAI 25 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 71
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=20.70 E-value=7.3e+02 Score=23.50 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCC
Q psy15387 38 FMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHI 117 (273)
Q Consensus 38 f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~ 117 (273)
+.......+..|..|...++..+..-..--..+..+..+.+....++.-++..+..++..++.|-.
T Consensus 58 ~~~vly~a~~hi~~L~~~Le~~d~~~~~~~~~~~~~~~v~~~c~t~i~af~~i~~~L~~n~~~~v~-------------- 123 (445)
T PF10428_consen 58 SLEVLYNANSHIDQLVEALERFDSSSREDEPSPRVNENVIRACQTCISAFKHICSLLRKNLDVFVD-------------- 123 (445)
T ss_pred HHHHHhhHHhhHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 333444444444444444444443332211111122344444444555555555555544444432
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 118 PASLRIRKTQQSTTLHLLVEAITEFNQEQ 146 (273)
Q Consensus 118 ~~e~ri~~~~~~~L~~~f~~~~~~f~~~q 146 (273)
.++.|.-+..+..|...+.++-+.++.+-
T Consensus 124 ~~D~ryiRtlll~lygS~~Elrna~~~l~ 152 (445)
T PF10428_consen 124 NGDVRYIRTLLLMLYGSIMELRNAWSSLG 152 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 23345556667777777777777776543
No 72
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=20.39 E-value=3.3e+02 Score=19.37 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15387 126 TQQSTTLHLLVEAITEFNQEQL 147 (273)
Q Consensus 126 ~~~~~L~~~f~~~~~~f~~~q~ 147 (273)
..+..+...|+.+...|...+.
T Consensus 78 ~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 78 RDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555443
No 73
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=20.18 E-value=5.1e+02 Score=21.54 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 33 EYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLER 103 (273)
Q Consensus 33 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~ 103 (273)
.....+......|.................|...|...-..+....+++.|...=+.........|.....
T Consensus 81 ~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~h~~~LrP~LghP~~~~eL~~L~~~E~~R~~~~~~~I~~~~~ 151 (208)
T PF14644_consen 81 RHWQKLCEAMKAIQEEFEQQQKQWEQQKDQHEQQLRPNLGHPDNRQELESLCEREEKRQKEHQEAIQNFWE 151 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777777777777777776544333334556666776666555555555555555443
Done!