Query psy15387
Match_columns 273
No_of_seqs 136 out of 1255
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 19:40:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 2.6E-55 9E-60 382.1 19.4 262 8-273 1-264 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 5.4E-48 1.8E-52 338.8 11.3 259 9-271 1-279 (279)
3 1fio_A SSO1 protein; four heli 100.0 4.7E-35 1.6E-39 244.0 18.8 190 34-236 3-196 (196)
4 3c98_B Syntaxin-1A; protein co 100.0 6.1E-32 2.1E-36 235.8 14.3 267 2-273 8-276 (279)
5 1s94_A S-syntaxin; three helix 100.0 2.5E-29 8.6E-34 206.5 9.7 170 8-180 7-180 (180)
6 1jth_B Syntaxin 1A; coiled-coi 99.9 3.4E-26 1.1E-30 161.4 10.6 73 201-273 2-74 (77)
7 2nps_B Syntaxin 13, vesicle-as 99.9 6.4E-26 2.2E-30 157.3 10.4 69 205-273 2-70 (71)
8 1sfc_B Protein (syntaxin 1A), 99.9 3.7E-26 1.3E-30 163.3 8.5 79 193-271 5-83 (83)
9 3hd7_B Syntaxin-1A; membrane p 99.9 7.6E-26 2.6E-30 169.9 10.0 81 193-273 5-85 (109)
10 3b5n_B Protein SSO1; snare com 99.9 2.9E-24 9.8E-29 148.1 10.9 68 201-268 2-69 (69)
11 1n7s_B Syntaxin 1A; neuronal s 99.9 2E-22 6.8E-27 138.5 9.7 65 200-264 3-67 (68)
12 1gl2_B Syntaxin 7; membrane pr 99.9 2.1E-22 7.2E-27 137.0 8.4 64 202-265 2-65 (65)
13 1ez3_A Syntaxin-1A; three heli 99.8 3.1E-19 1E-23 138.1 16.3 125 30-157 2-126 (127)
14 2dnx_A Syntaxin-12; snare, HAB 99.5 4.5E-13 1.5E-17 103.4 17.0 117 31-156 5-121 (130)
15 1hs7_A Syntaxin VAM3; UP-and-D 98.5 2.6E-06 8.9E-11 61.4 11.6 87 43-155 6-93 (97)
16 1n7s_D SNAP-25A; neuronal snar 97.0 0.01 3.5E-07 39.4 9.8 55 208-262 9-63 (66)
17 2nps_D Syntaxin-6; vesicle fus 96.9 0.0054 1.9E-07 42.7 7.9 63 204-266 14-76 (82)
18 1gl2_D Syntaxin 8, vesicle tra 96.8 0.0066 2.3E-07 40.3 7.5 58 205-262 5-62 (65)
19 1sfc_D Protein (SNAP-25B), pro 96.7 0.021 7.3E-07 40.1 10.3 56 207-262 27-82 (87)
20 1l4a_D S-SNAP25 fusion protein 96.1 0.026 8.8E-07 39.7 7.7 55 208-262 29-83 (87)
21 3b5n_D Protein transport prote 96.1 0.073 2.5E-06 35.1 9.3 54 208-261 9-62 (64)
22 1nhl_A Synaptosomal-associated 96.1 0.056 1.9E-06 34.3 8.4 44 218-261 9-52 (54)
23 3b5n_C Protein transport prote 95.5 0.14 4.9E-06 34.2 8.9 37 231-267 34-70 (70)
24 1n7s_C SNAP-25A; neuronal snar 95.3 0.38 1.3E-05 32.9 10.8 53 210-262 24-76 (79)
25 1l4a_C S-SNAP25 fusion protein 93.5 0.41 1.4E-05 33.1 7.6 37 224-260 42-78 (83)
26 1n7s_B Syntaxin 1A; neuronal s 79.1 11 0.00037 24.6 10.3 62 210-271 6-67 (68)
27 1n7s_A Vesicle-associated memb 76.5 12 0.00042 23.9 7.9 43 209-251 4-46 (63)
28 1gl2_C VTI1B, vesicle transpor 76.3 13 0.00045 24.0 8.9 47 215-261 15-61 (65)
29 3b5n_B Protein SSO1; snare com 75.1 15 0.0005 24.0 9.5 52 206-257 14-65 (69)
30 3hd7_A Vesicle-associated memb 73.4 20 0.00069 24.8 7.7 43 209-251 5-47 (91)
31 1gl2_B Syntaxin 7; membrane pr 72.6 16 0.00056 23.5 8.9 59 213-271 6-64 (65)
32 3n27_A Fusion glycoprotein F0, 72.4 14 0.00049 24.9 6.3 62 203-266 14-75 (80)
33 1gl2_A Endobrevin; membrane pr 70.0 19 0.00066 23.2 7.9 41 209-249 9-49 (65)
34 2nps_B Syntaxin 13, vesicle-as 69.4 21 0.00071 23.4 8.7 64 202-265 6-69 (71)
35 3b5n_A Synaptobrevin homolog 1 66.0 22 0.00077 22.5 7.7 41 210-250 3-43 (61)
36 2beq_A E2 glycoprotein; viral 62.5 17 0.00059 20.9 4.4 33 211-243 1-33 (38)
37 1sfc_B Protein (syntaxin 1A), 61.8 34 0.0012 23.1 9.6 63 198-260 17-79 (83)
38 4dnd_A Syntaxin-10, SYN10; str 61.4 47 0.0016 24.6 12.3 101 32-138 23-124 (130)
39 3hd7_B Syntaxin-1A; membrane p 61.3 42 0.0014 24.0 12.3 70 197-266 16-85 (109)
40 3ghg_A Fibrinogen alpha chain; 60.4 1.1E+02 0.0036 28.3 13.8 28 36-63 60-87 (562)
41 2c5k_T Syntaxin TLG1, T-snare 59.0 43 0.0015 23.4 10.2 87 36-143 6-92 (95)
42 2pjx_C Syntaxin-4; membrane tr 58.9 2.9 9.9E-05 21.7 0.6 13 8-20 1-13 (29)
43 1jth_B Syntaxin 1A; coiled-coi 55.0 43 0.0015 22.2 10.5 66 200-265 8-73 (77)
44 3c98_B Syntaxin-1A; protein co 50.9 2.8 9.6E-05 34.8 -0.4 69 198-266 208-276 (279)
45 3efg_A Protein SLYX homolog; x 50.2 55 0.0019 21.9 6.4 47 210-256 15-61 (78)
46 1mqs_B SED5P, integral membran 49.0 5.1 0.00017 24.7 0.7 15 6-20 6-20 (50)
47 3ghg_A Fibrinogen alpha chain; 44.8 1.9E+02 0.0065 26.7 13.1 30 75-104 50-79 (562)
48 2v71_A Nuclear distribution pr 43.6 1.2E+02 0.0041 24.0 12.2 102 35-155 12-113 (189)
49 3ajm_A Programmed cell death p 42.0 1.3E+02 0.0046 24.1 10.2 52 86-149 123-174 (213)
50 3t98_B Nucleoporin NUP58/NUP45 41.6 86 0.0029 21.8 8.1 32 34-65 6-37 (93)
51 1deq_A Fibrinogen (alpha chain 38.9 2E+02 0.007 25.3 10.3 24 42-65 62-85 (390)
52 4dnd_A Syntaxin-10, SYN10; str 37.8 1.1E+02 0.0036 22.7 6.6 21 125-145 73-93 (130)
53 2a1d_D Staphylocoagulase; prot 34.7 2.2E+02 0.0074 24.4 11.0 104 34-142 115-226 (329)
54 1l4a_A Synaptobrevin; snare, s 34.5 1E+02 0.0035 20.5 6.2 39 210-248 16-54 (80)
55 3swy_A Cyclic nucleotide-gated 33.3 79 0.0027 18.9 5.0 29 125-153 11-39 (46)
56 2l5g_A GPS2 protein, G protein 32.7 67 0.0023 18.2 3.5 23 206-228 12-38 (38)
57 3swf_A CGMP-gated cation chann 31.2 1.1E+02 0.0037 20.3 5.0 31 125-155 13-43 (74)
58 1wdg_A E2 glycoprotein; MHV, c 28.7 1.4E+02 0.0047 20.3 5.8 37 208-244 10-46 (94)
59 1urq_A M-tomosyn isoform; tran 28.1 1.2E+02 0.0041 19.3 6.8 40 211-250 6-45 (63)
60 2xhe_B Syntaxin1; exocytosis, 25.2 2.9E+02 0.0099 22.8 8.9 217 45-272 46-273 (279)
61 3kdq_A Uncharacterized conserv 24.9 1E+02 0.0036 23.4 4.8 53 9-64 17-69 (154)
62 3zcc_A HAMP, osmolarity sensor 24.2 1.5E+02 0.0051 19.6 5.3 20 35-54 36-55 (114)
63 2bez_C E2 glycoprotein; coiled 23.7 1.7E+02 0.0057 19.5 10.4 63 34-106 10-72 (77)
64 3f6n_A Virion-associated prote 21.8 1.7E+02 0.0059 21.3 5.0 8 78-85 40-47 (129)
65 2xze_Q Charged multivesicular 21.8 31 0.0011 20.1 0.9 13 4-17 28-40 (40)
66 2ieq_A S glycoprotein, spike g 20.9 2.3E+02 0.0079 20.1 5.8 33 209-241 15-47 (109)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=2.6e-55 Score=382.06 Aligned_cols=262 Identities=42% Similarity=0.634 Sum_probs=207.3
Q ss_pred hhhhHHHHHhcCcC--CCcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHH
Q psy15387 8 YHQRIKALRVSCVM--DQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTE 85 (273)
Q Consensus 8 ~~DRl~el~~~~~~--~~~~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~ 85 (273)
|||||++|++.... ++++++.++++.+||.|+..|++|+..|..|..++.+|.++|+.++++|.+++.++.+|+.++.
T Consensus 1 m~drl~~~~~~~~~~~~~~~~~~~~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~ 80 (267)
T 1dn1_B 1 MKDRTQELRTAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMS 80 (267)
T ss_dssp --------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHH
T ss_pred CCchHHHHhcccCCCCccceecccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 79999999987553 4557788899999999999999999999999999999999999988888887899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15387 86 TVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIAR 165 (273)
Q Consensus 86 ~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i~~ 165 (273)
+|+.+++.|+..|+.|...+...+ +++.++++.|++++|+..|+++|+++|..|+.+|..|+++++.++.|++.|+|
T Consensus 81 ~i~~~~~~i~~~Lk~l~~~~~~~~---~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~ 157 (267)
T 1dn1_B 81 DIKKTANKVRSKLKSIEQSIEQEE---GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITG 157 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccC
Confidence 999999999999999998765322 22333778899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15387 166 AEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHH 245 (273)
Q Consensus 166 ~~~~dee~~~~~~~g~~~~~f~~~~~~~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~N 245 (273)
|++++++++.++++|++ ++|+++++.++..++.++.+|++||++|.+||++|.|||+||.|||+||++||++||+||+|
T Consensus 158 ~~~tdeeie~~ie~g~~-~~f~q~~l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~n 236 (267)
T 1dn1_B 158 RTTTSEELEDMLESGNP-AIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 236 (267)
T ss_dssp CCCCHHHHHHHHHTCSS-CTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHH
T ss_pred CCCCHHHHHHHHhCCcH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999987 78988865566678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15387 246 VMEAGEAVETARVQTKKAIVYQKKARMS 273 (273)
Q Consensus 246 v~~a~~~v~~a~~~L~kA~~~qkk~rkk 273 (273)
|+.|..||+.|..+|.+|.+|||++|||
T Consensus 237 v~~a~~~v~~~~~~l~kA~~~q~~~rkk 264 (267)
T 1dn1_B 237 VEHAVDYVERAVSDTKKAVKYQSKARRK 264 (267)
T ss_dssp HHTCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999997
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=5.4e-48 Score=338.84 Aligned_cols=259 Identities=25% Similarity=0.431 Sum_probs=193.6
Q ss_pred hhhHHHHHhcCcC-------------C---CcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q psy15387 9 HQRIKALRVSCVM-------------D---QCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQ 72 (273)
Q Consensus 9 ~DRl~el~~~~~~-------------~---~~~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~ 72 (273)
||||+||++.+.. + +++++.++++.++++|+..++.|+..|..|..++..|.++|.+.+++|.+
T Consensus 1 ~drl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~ 80 (279)
T 2xhe_B 1 MDRLSRLRQMAAENQPAEASDAAGGAEAQIEETSLSAQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSK 80 (279)
T ss_dssp -CTTHHHHHTTSSCCC-----------------------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTH
T ss_pred CccHHHHHHHhhcccccccCCCcccccccccchhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 7999999996321 1 12556677888999999999999999999999999999999988898887
Q ss_pred ch--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCC-cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 73 DE--NMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHI-PA-SLRIRKTQQSTTLHLLVEAITEFNQEQLD 148 (273)
Q Consensus 73 ~~--~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~-~~-e~ri~~~~~~~L~~~f~~~~~~f~~~q~~ 148 (273)
++ .++.+|+.++..|+.+++.|+..|+.|...+......++++.+ +. +.|++++++.+|.++|++++..|+.+|..
T Consensus 81 ~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~ 160 (279)
T 2xhe_B 81 EDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAE 160 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 8999999999999999999999999999876544322222221 22 67999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHhCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 149 YKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEM 228 (273)
Q Consensus 149 y~~~~k~~~~r~~~i~~~~~~dee~~~~~~~g~~~~~f~~~~~~~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dl 228 (273)
|+++++.++.|++.+++|.+++++++.++++|++ ..|++. ....+...+.+|++|+++|.+||++|.|||+||.||
T Consensus 161 y~e~~k~~~~R~~~i~~~~~~~ee~~~~~e~g~~-~~f~q~---~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dl 236 (279)
T 2xhe_B 161 NKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTE-GIFSGM---RLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDM 236 (279)
T ss_dssp HHHHHHHTTTTSCCSSCCCCSSTTHHHHHHHC---------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCch-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998899999999999999988876 677651 223456678899999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15387 229 ALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKAR 271 (273)
Q Consensus 229 a~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~r 271 (273)
|+||.+||++||+||+||+.|..||+.|..+|.+|.+|||++|
T Consensus 237 a~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 237 STLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp HTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 9999999999999999999999999999999999999999987
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=100.00 E-value=4.7e-35 Score=244.05 Aligned_cols=190 Identities=26% Similarity=0.391 Sum_probs=170.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcch--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q psy15387 34 YHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDE--NMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDE 111 (273)
Q Consensus 34 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~--~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 111 (273)
.||.|++.|++|+..|..|..++..|.++|..++++|.+++ .++.+|+.++.+|+.+++.|+..|+.|....
T Consensus 3 ~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~------ 76 (196)
T 1fio_A 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG------ 76 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 58999999999999999999999999999998888887553 7999999999999999999999999998642
Q ss_pred hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHhCCCchhhhhHHHH
Q psy15387 112 IEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIV 191 (273)
Q Consensus 112 ~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i~~~~~~dee~~~~~~~g~~~~~f~~~~~ 191 (273)
.+.|++++++.+|+++|++++..|+.+|..|.+++|.++.|++.+++|++++++++.++++|+..++|+++++
T Consensus 77 -------~~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~~e~~~~~~~~~~~~~f~~~~~ 149 (196)
T 1fio_A 77 -------IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALL 149 (196)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHHHHTC
T ss_pred -------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHcCCchhHHHHHHH
Confidence 1247899999999999999999999999999999999999999999999999999888764333378998877
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15387 192 TE--TLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQG 236 (273)
Q Consensus 192 ~~--~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QG 236 (273)
.+ .+.+...+.+|++||++|.+||++|.|||+||.|||+||++||
T Consensus 150 ~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 150 NANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 52 3456788999999999999999999999999999999999998
No 4
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.97 E-value=6.1e-32 Score=235.77 Aligned_cols=267 Identities=41% Similarity=0.609 Sum_probs=197.1
Q ss_pred chhhhhhhhhHHHHHhcCcC--CCcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHH
Q psy15387 2 GVIHWYYHQRIKALRVSCVM--DQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLE 79 (273)
Q Consensus 2 ~~~~~m~~DRl~el~~~~~~--~~~~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~ 79 (273)
+++.. |||||.||++.... ....++..+.+.++++|+..|++|...|..|...+.+|..++...+.++.+.......
T Consensus 8 ~~~g~-mkDr~~el~~~~~~~~~~~~~~~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~ 86 (279)
T 3c98_B 8 HHHGS-MKDRTQELRTAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEE 86 (279)
T ss_dssp -------CCCCTTTC-----------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHH
T ss_pred cccCc-hHHHHHHHHHhhhcccccchhhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44555 89999999998653 3345566777899999999999999999999999999999999888888877788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 80 LDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQR 159 (273)
Q Consensus 80 i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r 159 (273)
++.++..++.++..+...+..+........ ..+....+.+.+.+|...|...|..+...|...+..|...++..+++
T Consensus 87 ~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~---~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~ 163 (279)
T 3c98_B 87 LEELMSDIKKTANKVRSKLKSIEQSIEQEE---GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR 163 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654433 12334778899999999999999999999999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHhCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy15387 160 VVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDII 239 (273)
Q Consensus 160 ~~~i~~~~~~dee~~~~~~~g~~~~~f~~~~~~~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~l 239 (273)
....+++..++.+.......+.. ..+...+..........+..+.+|+.+|..|+.+|.+|+++|.+|+.+|.+||+++
T Consensus 164 la~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~ 242 (279)
T 3c98_B 164 QLEITGRTTTSEELEDMLESGNP-AIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMI 242 (279)
T ss_dssp HHHHHTCCCCHHHHHHHHHSCCT-TSSTTTSCSCSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGG
T ss_pred HHHhhccCccchHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887665444444433 22322222122234556788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15387 240 DSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS 273 (273)
Q Consensus 240 D~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~rkk 273 (273)
|+|++||+.+.++|+.|..+|.+|.+||+++|||
T Consensus 243 ~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkk 276 (279)
T 3c98_B 243 DRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 276 (279)
T ss_dssp GCHHHHHHTCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999997
No 5
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.96 E-value=2.5e-29 Score=206.53 Aligned_cols=170 Identities=35% Similarity=0.614 Sum_probs=104.2
Q ss_pred hhhhHHHHHhcCcCC---Cccccccc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHH
Q psy15387 8 YHQRIKALRVSCVMD---QCLQLTIT-YSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDAR 83 (273)
Q Consensus 8 ~~DRl~el~~~~~~~---~~~~~~~~-~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l 83 (273)
|||||+||++..+.+ +++++.++ ++.+++.||+.|+.|+..|..|..++..|..+|..+|+++.+++.++.+|+.+
T Consensus 7 mkDRl~eL~~~~~~~~~~~~~~~~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l 86 (180)
T 1s94_A 7 TKDRLAALKAAVSDEEDVEEVAVQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEEL 86 (180)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHH
T ss_pred hhHHHHHHhccccCCCccccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 699999999986533 34777788 88999999999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387 84 TETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSI 163 (273)
Q Consensus 84 ~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i 163 (273)
+.+|+.+++.|+..|+.|...+.... +++.++++.|++++|+.+|.++|.++|..|+.+|..|++++|.++.|||.|
T Consensus 87 ~~~i~~~a~~ik~~Lk~l~~~~~~~~---~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~~I 163 (180)
T 1s94_A 87 MTDIKRTANKVRGKLKTIELNIEQEE---HSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQMEI 163 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765432 223347788999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhCC
Q psy15387 164 ARAEISDEKLEELLEQG 180 (273)
Q Consensus 164 ~~~~~~dee~~~~~~~g 180 (273)
+||++|+++++.++++|
T Consensus 164 ~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 164 TGRTTTNEELEDMLESG 180 (180)
T ss_dssp -----------------
T ss_pred hCCCCCHHHHHHHHhCc
Confidence 99999999999999865
No 6
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.93 E-value=3.4e-26 Score=161.38 Aligned_cols=73 Identities=52% Similarity=0.768 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15387 201 LEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS 273 (273)
Q Consensus 201 l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~rkk 273 (273)
|.++++|+++|.+||++|.|||+||.|||.||.+||++||+||+||+.|..||++|..+|.+|.+||+++|||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk 74 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999987
No 7
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.93 E-value=6.4e-26 Score=157.33 Aligned_cols=69 Identities=36% Similarity=0.584 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15387 205 QIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS 273 (273)
Q Consensus 205 ~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~rkk 273 (273)
++|+++|.+||++|.|||+||.|||.||.+||++||+||+||+.|..||++|..+|.+|.+||+++|||
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~ 70 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKK 70 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 479999999999999999999999999999999999999999999999999999999999999999997
No 8
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.93 E-value=3.7e-26 Score=163.29 Aligned_cols=79 Identities=49% Similarity=0.747 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15387 193 ETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKAR 271 (273)
Q Consensus 193 ~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~r 271 (273)
+++.++..+.++++|+++|.+||++|.|||+||.|||.||.+||++||+||+||+.|..||++|..+|.+|.+||+++|
T Consensus 5 ~~~~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 5 DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 4456677889999999999999999999999999999999999999999999999999999999999999999999986
No 9
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.93 E-value=7.6e-26 Score=169.87 Aligned_cols=81 Identities=48% Similarity=0.722 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy15387 193 ETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKARM 272 (273)
Q Consensus 193 ~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~rk 272 (273)
+++.++..++++++|+++|.+||++|.|||+||.|||+||.+||++||+||+||+.|.+||++|..+|.+|.+|||++||
T Consensus 5 ~~~~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk 84 (109)
T 3hd7_B 5 DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 84 (109)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy15387 273 S 273 (273)
Q Consensus 273 k 273 (273)
|
T Consensus 85 k 85 (109)
T 3hd7_B 85 K 85 (109)
T ss_dssp H
T ss_pred c
Confidence 6
No 10
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.91 E-value=2.9e-24 Score=148.08 Aligned_cols=68 Identities=46% Similarity=0.572 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 201 LEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQK 268 (273)
Q Consensus 201 l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qk 268 (273)
|.++++|+++|.+||++|.|||+||.|||.||.+||++||+||+||+.|..||++|..+|.+|.+|||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999996
No 11
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.88 E-value=2e-22 Score=138.51 Aligned_cols=65 Identities=52% Similarity=0.785 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 200 ALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAI 264 (273)
Q Consensus 200 ~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~ 264 (273)
++.++++|+++|.+||++|.|||+||.|||.||.+||++||+||+||+.|..||++|..+|.+|.
T Consensus 3 ~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999995
No 12
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.87 E-value=2.1e-22 Score=136.98 Aligned_cols=64 Identities=30% Similarity=0.515 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 202 EDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIV 265 (273)
Q Consensus 202 ~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~ 265 (273)
.++++|+++|.+|+++|.|||+||.|||.||.+||++||+||+||+.|..||++|..+|.+|.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999999999999999999999999999999999999999964
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.83 E-value=3.1e-19 Score=138.14 Aligned_cols=125 Identities=42% Similarity=0.632 Sum_probs=113.7
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy15387 30 TYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEE 109 (273)
Q Consensus 30 ~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~ 109 (273)
+++.+|+.||+.|++|+..|..|...+..|..+|..+|.+|..++.++.+|+.++.+|+.++..|+..|+.|...+...+
T Consensus 2 ~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~ 81 (127)
T 1ez3_A 2 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE 81 (127)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678999999999999999999999999999999999999888899999999999999999999999999998766432
Q ss_pred hhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 110 DEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERI 157 (273)
Q Consensus 110 ~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~ 157 (273)
+++.++++.|+|++|+..|.+.|.++|.+|+.+|..|++.++.++
T Consensus 82 ---~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ri 126 (127)
T 1ez3_A 82 ---GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 126 (127)
T ss_dssp ---TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ---ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334457889999999999999999999999999999999998764
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.5e-13 Score=103.42 Aligned_cols=117 Identities=19% Similarity=0.216 Sum_probs=105.4
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy15387 31 YSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEED 110 (273)
Q Consensus 31 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~ 110 (273)
++..+|+|...++.|...|+.|+.+|..|+++.. .||++.|.+.++++|+.+...++.+++.+...|++|....
T Consensus 5 ~~~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~-~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~----- 78 (130)
T 2dnx_A 5 SSGQLRDFSSIIQTCSGNIQRISQATAQIKNLMS-QLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLP----- 78 (130)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-----
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 4556899999999999999999999999999997 7999999999999999999999999999999999998642
Q ss_pred hhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 111 EIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEER 156 (273)
Q Consensus 111 ~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~ 156 (273)
++....+.|.++.+..+|.++|+.+++.|+.+|..|.++.|..
T Consensus 79 ---~~~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~ 121 (130)
T 2dnx_A 79 ---LPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKES 121 (130)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1223566789999999999999999999999999999998764
No 15
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=98.48 E-value=2.6e-06 Score=61.39 Aligned_cols=87 Identities=11% Similarity=0.191 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHHH
Q psy15387 43 EDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELD-ARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASL 121 (273)
Q Consensus 43 ~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~-~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e~ 121 (273)
.+....|..+..+|..|+++.. .+|+..|+..+|..|+ .++..++.+.+.|. .+.. .
T Consensus 6 ~d~~~li~t~s~niq~l~k~~~-qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~----~l~~---------------l-- 63 (97)
T 1hs7_A 6 KELSNLIETFAEQSRVLEKECT-KIGSKRDSKELRYKIETELIPNCTSVRDKIE----SNIL---------------I-- 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH----HSTH---------------H--
T ss_pred ccHHHHHHHHHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHHHHHHHHHHHHHH----Hhcc---------------c--
Confidence 3445556777777779999987 6899999999999999 99999999998887 1111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 122 RIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEE 155 (273)
Q Consensus 122 ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~ 155 (273)
.+..+|.++|..+++.|+.+|..|.++.+.
T Consensus 64 ----~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 64 ----HQNGKLSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp ----HHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----chhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 157889999999999999999999998875
No 16
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.98 E-value=0.01 Score=39.44 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 208 HQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262 (273)
Q Consensus 208 ~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~k 262 (273)
.+.+..|..+|..|+.|-.+|+.=|..|..+||.|+..++.+...+..+...+.+
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999887764
No 17
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.86 E-value=0.0054 Score=42.73 Aligned_cols=63 Identities=13% Similarity=0.195 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 204 VQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVY 266 (273)
Q Consensus 204 i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~ 266 (273)
+++-.+.+..|..+|..|+.|-.+|+.-|..|..+||.|+..++.+...+..+...+.+-.+.
T Consensus 14 ~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566889999999999999999999999999999999999999999999999988876654
No 18
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.79 E-value=0.0066 Score=40.28 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 205 QIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262 (273)
Q Consensus 205 ~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~k 262 (273)
++-.+.+..|..+|..|+.|-.+|+.=|..|..+||.|+..++.+...+..+...+.+
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999999999999999999999999988877643
No 19
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.74 E-value=0.021 Score=40.14 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 207 RHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262 (273)
Q Consensus 207 R~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~k 262 (273)
-.+.+..|...|..|+.|-.+|+.=|..|..+||+|+..++.+...+..+...+.+
T Consensus 27 qD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 27 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999887754
No 20
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.15 E-value=0.026 Score=39.71 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 208 HQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262 (273)
Q Consensus 208 ~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~k 262 (273)
.+.+..|...|..|+.|=.+|+.=|..|.++||+|+..++.+...+..++..+.+
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999999999999999998877754
No 21
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.073 Score=35.07 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 208 HQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTK 261 (273)
Q Consensus 208 ~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~ 261 (273)
.+.+.+|...+.-|+.|=.+|+.=|..|-++||+|+..++.+...+..+..-|.
T Consensus 9 D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~ 62 (64)
T 3b5n_D 9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999999999999999999999998887765
No 22
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.09 E-value=0.056 Score=34.32 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 218 IQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTK 261 (273)
Q Consensus 218 I~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~ 261 (273)
+.|-.++=..-...+..|||.|++|+.+++....++..|...|.
T Consensus 9 ~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 9 AIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 34444555556667889999999999999999999999998875
No 23
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.49 E-value=0.14 Score=34.24 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=32.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 231 LVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQ 267 (273)
Q Consensus 231 LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~q 267 (273)
++..|||.|++||.|++.+..+...|..+|..=..||
T Consensus 34 ~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~~ 70 (70)
T 3b5n_C 34 MLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKLQ 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 6679999999999999999999999999998766654
No 24
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.30 E-value=0.38 Score=32.94 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 210 ELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262 (273)
Q Consensus 210 eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~k 262 (273)
-+++..+-+.|-.++=.........|||.|++|+.++..+..++..|...|..
T Consensus 24 s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 24 STRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 34444444555556666677788899999999999999999999999988864
No 25
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=93.52 E-value=0.41 Score=33.12 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 224 LFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQT 260 (273)
Q Consensus 224 iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L 260 (273)
.=..=..++..|||.|++||.+++........|...|
T Consensus 42 ~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 42 AGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455777999999999999999998888776655
No 26
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=79.11 E-value=11 Score=24.58 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15387 210 ELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKAR 271 (273)
Q Consensus 210 eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~r 271 (273)
+|..=+..|..|..=..+|+.|..+=+.++..=..-|+....||+.+...+.+|...=+++.
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666666666666666666666666666666666666666666655554
No 27
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=76.55 E-value=12 Score=23.89 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGE 251 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~ 251 (273)
+.|..+...|.|+..|+.+==.-|.+.|+-||.++.-.+.-..
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~ 46 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4578888999999999999999999999999988776555443
No 28
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=76.31 E-value=13 Score=24.04 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 215 EKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTK 261 (273)
Q Consensus 215 e~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~ 261 (273)
..-+.|--++=.+...-+..|+|.|.+....+..+..++.+|...|.
T Consensus 15 ~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 15 HRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 33444445555566667789999999999999999999999988775
No 29
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=75.14 E-value=15 Score=24.03 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy15387 206 IRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETAR 257 (273)
Q Consensus 206 eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~ 257 (273)
.=...|.+|-.-..+|..|..+=+.+|..=..-++.-..||+.+...+.+|.
T Consensus 14 ~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 14 KLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555554444444445555555555444443
No 30
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=73.36 E-value=20 Score=24.83 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGE 251 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~ 251 (273)
+.+.++...+.|+..+..+==.-|-+.||-||.++.-.+.-..
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 4677888889999999988888889999999888876665544
No 31
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=72.63 E-value=16 Score=23.48 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15387 213 KLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKAR 271 (273)
Q Consensus 213 ~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~r 271 (273)
+=+..|..|..-..+|+.|..+=+.++..=..-|+....|++.+...+.+|...=+++.
T Consensus 6 eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 6 ERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445555555556666666666666666666666666666666666666655555443
No 32
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=72.42 E-value=14 Score=24.86 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 203 DVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVY 266 (273)
Q Consensus 203 ~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~ 266 (273)
-|+..++.|.+|-.+...+--...-+..-|..+|.+ .|--|+..|....+.....|.+|+..
T Consensus 14 SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 14 SIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 366777788888888888777777777778888876 46667888999999999999988753
No 33
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=69.98 E-value=19 Score=23.18 Aligned_cols=41 Identities=7% Similarity=0.305 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEA 249 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a 249 (273)
+.|..|...|.|+..|+.+==.-|.+.|+-||.+..-.+.-
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L 49 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDL 49 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35777888888888888888888888998888877655443
No 34
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=69.42 E-value=21 Score=23.37 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 202 EDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIV 265 (273)
Q Consensus 202 ~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~ 265 (273)
.+|..=+..|.+|-.-..+|..|..+=+.+|..=..-++....||+.+...+.+|...-+++++
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk 69 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRK 69 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455556678888888999999999999999988888999999999999999999876655543
No 35
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=66.04 E-value=22 Score=22.49 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy15387 210 ELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAG 250 (273)
Q Consensus 210 eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~ 250 (273)
.|.+|...|.|+..|+.+==.-|-+.|+-||.+..-.+.-.
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~ 43 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLA 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46788888999999998888888999999988877655433
No 36
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=62.47 E-value=17 Score=20.86 Aligned_cols=33 Identities=9% Similarity=0.233 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy15387 211 LLKLEKSIQELRDLFVEMALLVEQQGDIIDSIE 243 (273)
Q Consensus 211 I~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie 243 (273)
|..+..++..++.-+..+...|.+||..|...-
T Consensus 1 i~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~Lt 33 (38)
T 2beq_A 1 XSQIQESLTTTSTALGKLQDVVNQNAQALNTLV 33 (38)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346778899999999999999999999887653
No 37
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=61.76 E-value=34 Score=23.09 Aligned_cols=63 Identities=8% Similarity=0.042 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 198 RKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQT 260 (273)
Q Consensus 198 ~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L 260 (273)
+.-..++..=...|.+|-.-..+|..|..+=+.+|..=..-++....||+.+...+.+|...-
T Consensus 17 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666667788888888888888888888888888888888888888888888887643
No 38
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=61.42 E-value=47 Score=24.62 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q psy15387 32 SEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDE 111 (273)
Q Consensus 32 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 111 (273)
.+..+-|+...++|...|..+.+....-..+... -+++ ...++..+..++...+..|...|..|.+.+.-.+..
T Consensus 23 ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~-~~~~-----s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n 96 (130)
T 4dnd_A 23 MSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQE-SAAV-----GREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN 96 (130)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456779999999999998888887765554431 1111 123455566666666666777777776655432211
Q ss_pred hc-cCCCcHHHHHHHHHHHHHHHHHHHH
Q psy15387 112 IE-DGHIPASLRIRKTQQSTTLHLLVEA 138 (273)
Q Consensus 112 ~~-~~~~~~e~ri~~~~~~~L~~~f~~~ 138 (273)
+. -+-+..+..-|+..+..+...+..+
T Consensus 97 p~kF~l~~~Ei~~Rr~fV~~~r~~I~~m 124 (130)
T 4dnd_A 97 PGKFKLPAGDLQERKVFVERMREAVQEM 124 (130)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0122555666766666666665544
No 39
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=61.32 E-value=42 Score=23.97 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 197 ARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVY 266 (273)
Q Consensus 197 ~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~ 266 (273)
.+....++..=+..|.+|..-..+|..|..+=+.+|..=..-++....||+.+...+.+|...=+++++.
T Consensus 16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk 85 (109)
T 3hd7_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 85 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3445566777778899999999999999999999999999999999999999999999999887766654
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.42 E-value=1.1e+02 Score=28.35 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 36 DCFMDTVEDSRALIANIQEHVKAMRNLH 63 (273)
Q Consensus 36 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~ 63 (273)
.+|...+++|+..++.++.+-.....+.
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~ 87 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLT 87 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 3444444444444444444444444443
No 41
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=58.97 E-value=43 Score=23.37 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccC
Q psy15387 36 DCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDG 115 (273)
Q Consensus 36 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~ 115 (273)
.-|+.-.+++...|..+...+.. + .++ ..+..+.++.....++...+..+...|.-++..
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~----~----~~~-~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~----------- 65 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITR----H----NTA-GDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD----------- 65 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH----T----CCC---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH----c----cCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence 45888889999888888887543 1 111 123455556665555555556665555554432
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 116 HIPASLRIRKTQQSTTLHLLVEAITEFN 143 (273)
Q Consensus 116 ~~~~e~ri~~~~~~~L~~~f~~~~~~f~ 143 (273)
.+.+..-|+..+..+..++..+-..|+
T Consensus 66 -~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 66 -ENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp -TTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 144455678888888887777666553
No 42
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=58.89 E-value=2.9 Score=21.66 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=11.4
Q ss_pred hhhhHHHHHhcCc
Q psy15387 8 YHQRIKALRVSCV 20 (273)
Q Consensus 8 ~~DRl~el~~~~~ 20 (273)
||||.-|||+...
T Consensus 1 mrdrthelrqgdn 13 (29)
T 2pjx_C 1 MRDRTHELRQGDN 13 (29)
T ss_pred CccchhhhhcCCC
Confidence 7899999999955
No 43
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=55.01 E-value=43 Score=22.15 Aligned_cols=66 Identities=11% Similarity=0.044 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 200 ALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIV 265 (273)
Q Consensus 200 ~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~ 265 (273)
-..+|..=+..|.+|-.-..+|..|..+=+.+|..=..-++....||+.+...+.+|...-+++++
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 8 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345566666778888888888888888888888888888888888999999988888887666554
No 44
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=50.88 E-value=2.8 Score=34.84 Aligned_cols=69 Identities=10% Similarity=0.034 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 198 RKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVY 266 (273)
Q Consensus 198 ~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~ 266 (273)
......+..=...|.+|...+.+|..+..+-+..+.+=..-++.|-.+|+.+...+.+|...-.++++.
T Consensus 208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkk 276 (279)
T 3c98_B 208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 276 (279)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344445556667788888888888888888888888777778888888999999999988877776654
No 45
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=50.24 E-value=55 Score=21.94 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy15387 210 ELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETA 256 (273)
Q Consensus 210 eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a 256 (273)
.|..||-.+.-.-....+|+..|..|...||+....+..-...+...
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777778888888888888899999999999988887776665543
No 46
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=48.98 E-value=5.1 Score=24.67 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=12.2
Q ss_pred hhhhhhHHHHHhcCc
Q psy15387 6 WYYHQRIKALRVSCV 20 (273)
Q Consensus 6 ~m~~DRl~el~~~~~ 20 (273)
.+++||..|+++.+.
T Consensus 6 ~SiqDRT~EF~siv~ 20 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVL 20 (50)
T ss_dssp HHHHBCHHHHHHHHH
T ss_pred ccccccCHHHHHHHH
Confidence 456999999999864
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.83 E-value=1.9e+02 Score=26.68 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387 75 NMKLELDARTETVKKIAKKVSNSLKKLERS 104 (273)
Q Consensus 75 ~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 104 (273)
.++.-|+..-.+++..+..+++.+.++.+.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKn 79 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhh
Confidence 466667766677777777777777777543
No 48
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=43.64 E-value=1.2e+02 Score=24.00 Aligned_cols=102 Identities=8% Similarity=0.154 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcc
Q psy15387 35 HDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIED 114 (273)
Q Consensus 35 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~ 114 (273)
...|-..+......+..+.....++..... .+...++.-.....+..+.++..+..+...+...+
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSr----------ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k----- 76 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSR----------ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK----- 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 444555555555555555555555444433 35555555555555556666666666666554322
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 115 GHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEE 155 (273)
Q Consensus 115 ~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~ 155 (273)
.......+...+....+..-+..++.....+..+++.
T Consensus 77 ----~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 77 ----EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112234444455566666666666666655555543
No 49
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=41.95 E-value=1.3e+02 Score=24.11 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 86 TVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDY 149 (273)
Q Consensus 86 ~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y 149 (273)
.|+.++..|+..|..++.-... .+. . .+-.+....+.|..-+++|...-..|
T Consensus 123 tIKeIAsaIKklLDAvn~v~~~------~~~-~-----~k~~le~~KreFVkySKrFS~TLKeY 174 (213)
T 3ajm_A 123 TIKDIASAIKELLDTVNNVFKK------YQY-Q-----NRRALEHQKKEFVKYSKSFSDTLKTY 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------SCC-S-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh------cch-h-----HHHHHHHHHHHHHHHhhHhhHHHHHH
Confidence 3555566666666666554321 121 1 23444555566666666666554443
No 50
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=41.56 E-value=86 Score=21.75 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387 34 YHDCFMDTVEDSRALIANIQEHVKAMRNLHSD 65 (273)
Q Consensus 34 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~ 65 (273)
+.+=|...+.+....|......|+.|++....
T Consensus 6 P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 6 PADYFRVLVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556788999999999999999999988653
No 51
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.88 E-value=2e+02 Score=25.29 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387 42 VEDSRALIANIQEHVKAMRNLHSD 65 (273)
Q Consensus 42 ~~~i~~~i~~i~~~i~~L~~l~~~ 65 (273)
-..+...|..|...+..+.+.++.
T Consensus 62 er~~~~rIe~L~~~L~~~s~s~~~ 85 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNYQKNSKD 85 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhH
Confidence 355666666666666666666654
No 52
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=37.75 E-value=1.1e+02 Score=22.66 Aligned_cols=21 Identities=5% Similarity=-0.124 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15387 125 KTQQSTTLHLLVEAITEFNQE 145 (273)
Q Consensus 125 ~~~~~~L~~~f~~~~~~f~~~ 145 (273)
++.+..+.-.+.++-..-.-+
T Consensus 73 ~~~l~sie~dLeDLe~sI~iv 93 (130)
T 4dnd_A 73 RNGLRSIEWDLEDLEETIGIV 93 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554444444
No 53
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus aureus}
Probab=34.66 E-value=2.2e+02 Score=24.38 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc--hHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHhh
Q psy15387 34 YHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQD--ENMKLELDARTETVKKIAKKVS------NSLKKLERSI 105 (273)
Q Consensus 34 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~--~~~~~~i~~l~~~i~~~~~~i~------~~l~~l~~~~ 105 (273)
.+.++....+.|..+...+...|..|...+.. |-..... .....+|..|.++|..++...- .....|...+
T Consensus 115 T~~rYn~I~~sLK~a~~eF~keV~~I~~kn~D-LK~f~~~~e~ka~~elndL~nei~~Lg~tf~~~~~~~~~a~eL~aKL 193 (329)
T 2a1d_D 115 TMREYNELTESLKSAVKDFEKDVEKIENQHHD-LKPFTDEMEEKATSRVDDLANKAYSVYFAFVRDTQHKTEALELKAKV 193 (329)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGG-GSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 58899999999999999999999999999986 3333222 2456788888888887776652 2244444433
Q ss_pred HhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 106 KKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEF 142 (273)
Q Consensus 106 ~~~~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f 142 (273)
+-.-+...++......||++... .+|..++.+|
T Consensus 194 DlIlG~~~~~~ritNeRi~ke~i----eDLeSIIDdF 226 (329)
T 2a1d_D 194 DLVLGDEDKPHRISNERIEKEMI----KDLESIIEDF 226 (329)
T ss_dssp HHHHCCSSSCCCCCSHHHHHHHH----HHHHHHHHHH
T ss_pred HHHhccccCccccchHHHHHHHH----HHHHHHHHHH
Confidence 32222222333455567776553 4445555555
No 54
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=34.48 E-value=1e+02 Score=20.52 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy15387 210 ELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVME 248 (273)
Q Consensus 210 eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~ 248 (273)
.|..|...|.|+..|+.+==.-|.+.|+-||.++.-.+.
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456667777777777777777788888888877766554
No 55
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.28 E-value=79 Score=18.91 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 125 KTQQSTTLHLLVEAITEFNQEQLDYKEKC 153 (273)
Q Consensus 125 ~~~~~~L~~~f~~~~~~f~~~q~~y~~~~ 153 (273)
.+.+..|..+|..++.+|...|...+.++
T Consensus 11 e~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 11 GSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888899999999999888665554
No 56
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.73 E-value=67 Score=18.22 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHH
Q psy15387 206 IRHQELLKLEKSIQEL----RDLFVEM 228 (273)
Q Consensus 206 eR~~eI~~Ie~sI~eL----~~iF~dl 228 (273)
+..+.|.+++..+..| |+||.+|
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555555555444 6777653
No 57
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=31.25 E-value=1.1e+02 Score=20.33 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 125 KTQQSTTLHLLVEAITEFNQEQLDYKEKCEE 155 (273)
Q Consensus 125 ~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~ 155 (273)
.+.+..|..+|..++.+|...|...+.++-.
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~KLKqRit~ 43 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQKLKQRLTK 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888899999999999999877766643
No 58
>1wdg_A E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion core, viral entry, V protein; 2.06A {Murine hepatitis virus} SCOP: h.3.3.1 PDB: 1wdf_A
Probab=28.70 E-value=1.4e+02 Score=20.29 Aligned_cols=37 Identities=5% Similarity=0.208 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy15387 208 HQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEH 244 (273)
Q Consensus 208 ~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~ 244 (273)
+..|-.|..+...++.-+..+...|.+||..|...-.
T Consensus 10 NkAignIq~aF~avn~AL~KIQdVVN~Qg~AL~~Lt~ 46 (94)
T 1wdg_A 10 NNALGAIQDGFDATNSALGKIQSVVNANAEALNNLLN 46 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888889999999999998876543
No 59
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.08 E-value=1.2e+02 Score=19.31 Aligned_cols=40 Identities=8% Similarity=0.177 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy15387 211 LLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAG 250 (273)
Q Consensus 211 I~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~ 250 (273)
|..+...+.++..++.+=-.-|.+-|+-|+.++.-.+.-.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~ 45 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMM 45 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888888888888888888877655533
No 60
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=25.19 E-value=2.9e+02 Score=22.78 Aligned_cols=217 Identities=14% Similarity=0.114 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--c-cCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHH-
Q psy15387 45 SRALIANIQEHVKAMRNLHSDL--L-SSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPAS- 120 (273)
Q Consensus 45 i~~~i~~i~~~i~~L~~l~~~~--l-~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e- 120 (273)
.-.....|...+..|......+ + ......+.. .....+..+|..+...|...++.+...+...... .......
T Consensus 46 F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~-~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~--~~~~~~~~ 122 (279)
T 2xhe_B 46 FFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSK-EDRDRLNEKLQDTMARISALGNKIRADLKQIEKE--NKRAQQEG 122 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhcc
Confidence 4455666667776666665542 1 111111222 2223566777778888888888877766654310 0000000
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCHHHHHHHHhCCCchhhhhHHHHHH-H
Q psy15387 121 ---LRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAE--ISDEKLEELLEQGNYASIFNADIVTE-T 194 (273)
Q Consensus 121 ---~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i~~~~--~~dee~~~~~~~g~~~~~f~~~~~~~-~ 194 (273)
..............+..+..+|+.+-..|.........+.-.-.... .+.. .... ......+-.+ .
T Consensus 123 ~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~-------~~~~-ee~~~~~e~g~~ 194 (279)
T 2xhe_B 123 TFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEP-------SLSD-DAIQKVIEHGTE 194 (279)
T ss_dssp CCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCC-------CCSS-TTHHHHHHHC--
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCH-HHHHHHHhCCch
Confidence 00000012334556677888899988888887765544322111111 1110 0011 1111111101 0
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy15387 195 LE-ARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKARM 272 (273)
Q Consensus 195 ~~-~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~rk 272 (273)
.. .+......+.-..+|.+=+..|..|..=..+|+.|..+=+.+|..=..-|+....||+.+...+.+|...=+++.+
T Consensus 195 ~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~ 273 (279)
T 2xhe_B 195 GIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARH 273 (279)
T ss_dssp ---------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111122233334666778888888888889999988888888777777888888888888888888776555543
No 61
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=24.94 E-value=1e+02 Score=23.45 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=34.0
Q ss_pred hhhHHHHHhcCcCCCcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387 9 HQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHS 64 (273)
Q Consensus 9 ~DRl~el~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~ 64 (273)
.-|+.+|++.....-.+.-+-.|+..|.+.+...+.+ +..+...+-.+.....
T Consensus 17 ~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~El~~~---~~~L~~Li~~IN~TN~ 69 (154)
T 3kdq_A 17 QRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEEL---TTRINDLVRRINRTNS 69 (154)
T ss_dssp HHHHHHHHHHHHHTTEEETTCCCSSCHHHHHHHHHHH---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCeecCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHhcc
Confidence 4578888888654444555556677788888766666 5555556666655543
No 62
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=24.17 E-value=1.5e+02 Score=19.58 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15387 35 HDCFMDTVEDSRALIANIQE 54 (273)
Q Consensus 35 ~~~f~~~~~~i~~~i~~i~~ 54 (273)
.++|-..+..+...+..+..
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~ 55 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQ 55 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 44554444444444444433
No 63
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=23.67 E-value=1.7e+02 Score=19.48 Aligned_cols=63 Identities=6% Similarity=0.147 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy15387 34 YHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIK 106 (273)
Q Consensus 34 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~ 106 (273)
....|......|...+......+.+++.-.+. --..+..++......|..|...|+.+-..++
T Consensus 10 iA~sFN~A~~~i~~g~~tts~AL~kiQdVVN~----------q~~aL~~L~~qL~~NFgAISssi~dIy~RLd 72 (77)
T 2bez_C 10 IANQFNKAISQIQESLTTTSTALGKLQDVVNQ----------NAQALNTLVKQLSSNFGAISSVLNDILSRLD 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 35678888888888888877777777766653 2334666677777777777777777665544
No 64
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=21.82 E-value=1.7e+02 Score=21.26 Aligned_cols=8 Identities=13% Similarity=0.140 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy15387 78 LELDARTE 85 (273)
Q Consensus 78 ~~i~~l~~ 85 (273)
..++.+..
T Consensus 40 ~~lEsiAA 47 (129)
T 3f6n_A 40 ESLETVAA 47 (129)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 33444433
No 65
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=21.77 E-value=31 Score=20.07 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=9.8
Q ss_pred hhhhhhhhHHHHHh
Q psy15387 4 IHWYYHQRIKALRV 17 (273)
Q Consensus 4 ~~~m~~DRl~el~~ 17 (273)
|.. |.-||+.||+
T Consensus 28 i~~-MqsRLaALRS 40 (40)
T 2xze_Q 28 LEA-MQSRLATLRS 40 (40)
T ss_dssp HHH-HHHHHHHHTC
T ss_pred HHH-HHHHHHHhcC
Confidence 444 7789999985
No 66
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=20.89 E-value=2.3e+02 Score=20.12 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy15387 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDS 241 (273)
Q Consensus 209 ~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~ 241 (273)
+.|..+..++.-++.-+..+...|.+||..|..
T Consensus 15 ~Ai~~~~~gf~tv~~Al~kiQdVVN~q~~aLs~ 47 (109)
T 2ieq_A 15 DAITQTAEAIHTVTIALNKIQDVVNQQGSALNH 47 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777777765543
Done!