RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15387
(273 letters)
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1
PDB: 3c98_B
Length = 267
Score = 144 bits (365), Expect = 3e-42
Identities = 103/234 (44%), Positives = 153/234 (65%), Gaps = 4/234 (1%)
Query: 38 FMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNS 97
F + VE+ R I I E+V+ ++ HS +L+SP DE K EL+ +KK A KV +
Sbjct: 33 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSK 92
Query: 98 LKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERI 157
LK +E+SI++EE A LRIRKTQ ST VE ++E+N Q DY+E+C+ RI
Sbjct: 93 LKSIEQSIEQEEGLNRS---SADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 149
Query: 158 QRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKS 217
QR + I + E+LE++LE GN +IF + I+ ++ +++AL +++ RH E++KLE S
Sbjct: 150 QRQLEITGRTTTSEELEDMLESGN-PAIFASGIIMDSSISKQALSEIETRHSEIIKLENS 208
Query: 218 IQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKAR 271
I+EL D+F++MA+LVE QG++ID IE++V A + VE A TKKA+ YQ KAR
Sbjct: 209 IRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 262
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 134 bits (337), Expect = 5e-38
Identities = 64/238 (26%), Positives = 127/238 (53%), Gaps = 8/238 (3%)
Query: 38 FMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKL--ELDARTETVKKIAKKVS 95
F + V+ R I +I++ ++ + LH++ L + +++ +L +L + + K+
Sbjct: 46 FFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIR 105
Query: 96 NSLKKLERSIKKEEDE--IEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKC 153
LK++E+ K+ + E EDG + LRIR++Q S+ V+ +T +N Q + K +
Sbjct: 106 ADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRY 165
Query: 154 EERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLK 213
E + R + +SD+ +++++E G + A L +++ RH+++ +
Sbjct: 166 GENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRL----EGAEAKLNEIRDRHKDIQQ 221
Query: 214 LEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKAR 271
LE+S+ EL ++F +M+ LV QG++ID IE V ++ V+ A Q +A YQ+ AR
Sbjct: 222 LERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein;
2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Length = 196
Score = 103 bits (259), Expect = 2e-27
Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 17/202 (8%)
Query: 38 FMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLE--LDARTETVKKIAKKVS 95
FM+ + + + + +LH LL+ +++ L LD + K+
Sbjct: 7 FMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLK 66
Query: 96 NSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEE 155
N +K +R ++ Q + ++ I ++ +YKE+ +E
Sbjct: 67 NEIKSAQRD-------------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKE 113
Query: 156 RIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTET--LEARKALEDVQIRHQELLK 213
+ +R I + E +++++E + IF+ ++ EA+ AL +VQ RHQELLK
Sbjct: 114 QAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLK 173
Query: 214 LEKSIQELRDLFVEMALLVEQQ 235
LEKS+ EL LF +M LV +Q
Sbjct: 174 LEKSMAELTQLFNDMEELVIEQ 195
>1s94_A S-syntaxin; three helix bundle, structural plasticity,
endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP:
a.47.2.1
Length = 180
Score = 90.1 bits (223), Expect = 3e-22
Identities = 57/143 (39%), Positives = 91/143 (63%), Gaps = 3/143 (2%)
Query: 38 FMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNS 97
F + VE+ RA+I I ++V A++ HSD+LS+P+ D+ MK EL+ +K+ A KV
Sbjct: 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGK 100
Query: 98 LKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERI 157
LK +E +I++EE A LRIRKTQ ST VE ++++N Q+DY+++C+ RI
Sbjct: 101 LKTIELNIEQEEHS---NKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARI 157
Query: 158 QRVVSIARAEISDEKLEELLEQG 180
+R + I ++E+LE++LE G
Sbjct: 158 KRQMEITGRTTTNEELEDMLESG 180
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis
complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB:
1hvv_A* 1urq_B
Length = 77
Score = 84.7 bits (210), Expect = 2e-21
Identities = 39/72 (54%), Positives = 55/72 (76%)
Query: 200 ALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQ 259
AL +++ RH E++KLE SI+EL D+F++MA+LVE QG++ID IE++V A + VE A
Sbjct: 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 60
Query: 260 TKKAIVYQKKAR 271
TKKA+ YQ KAR
Sbjct: 61 TKKAVKYQSKAR 72
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Length = 83
Score = 84.8 bits (210), Expect = 2e-21
Identities = 40/82 (48%), Positives = 62/82 (75%)
Query: 190 IVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEA 249
I+ ++ +++AL +++ RH E++KLE SI+EL D+F++MA+LVE QG++ID IE++V A
Sbjct: 2 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA 61
Query: 250 GEAVETARVQTKKAIVYQKKAR 271
+ VE A TKKA+ YQ KAR
Sbjct: 62 VDYVERAVSDTKKAVKYQSKAR 83
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
juncti cytoplasmic vesicle, membrane, phosphoprotein;
HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Length = 109
Score = 84.8 bits (210), Expect = 4e-21
Identities = 39/80 (48%), Positives = 60/80 (75%)
Query: 193 ETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEA 252
++ +++AL +++ RH E++KLE SI+EL D+F++MA+LVE QG++ID IE++V A +
Sbjct: 5 DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64
Query: 253 VETARVQTKKAIVYQKKARM 272
VE A TKKA+ YQ KAR
Sbjct: 65 VERAVSDTKKAVKYQSKARR 84
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex;
1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A
3lg7_A*
Length = 127
Score = 84.3 bits (208), Expect = 1e-20
Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 38 FMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNS 97
F + VE+ R I I E+V+ ++ HS +L+SP DE K EL+ +KK A KV +
Sbjct: 10 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSK 69
Query: 98 LKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERI 157
LK +E+SI++EE A LRIRKTQ ST VE ++E+N Q DY+E+C+ RI
Sbjct: 70 LKSIEQSIEQEEGL---NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 126
Query: 158 Q 158
Q
Sbjct: 127 Q 127
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25,
SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A
{Saccharomyces cerevisiae} SCOP: h.1.15.1
Length = 69
Score = 81.2 bits (201), Expect = 3e-20
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 200 ALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQ 259
AL +VQ RHQELLKLEKS+ EL LF +M LV +Q + +D I+ +V +A VE
Sbjct: 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGH 60
Query: 260 TKKAIVYQK 268
T KA+ +
Sbjct: 61 TDKAVKSAR 69
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion,
snare complex, early endosomal snare complex, VTI1A,
VAMP4, transport protein; 2.50A {Rattus norvegicus}
Length = 71
Score = 79.6 bits (197), Expect = 1e-19
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 207 RHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVY 266
R + +LE I ++ +F ++A+++ QGD+IDSIE +V + VE A Q ++A Y
Sbjct: 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63
Query: 267 QKKAR 271
QKK+R
Sbjct: 64 QKKSR 68
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Length = 68
Score = 75.4 bits (186), Expect = 4e-18
Identities = 34/65 (52%), Positives = 50/65 (76%)
Query: 200 ALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQ 259
AL +++ RH E++KLE SI+EL D+F++MA+LVE QG++ID IE++V A + VE A
Sbjct: 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 62
Query: 260 TKKAI 264
TKKA+
Sbjct: 63 TKKAV 67
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex,
coiled coil, transmembrane; 1.9A {Mus musculus} SCOP:
h.1.15.1
Length = 65
Score = 68.0 bits (167), Expect = 2e-15
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 203 DVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262
+ R + +LE I ++ ++F ++ +++ +QGD+IDSIE +V A V+ A Q +
Sbjct: 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62
Query: 263 A 263
A
Sbjct: 63 A 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 1e-08
Identities = 50/287 (17%), Positives = 91/287 (31%), Gaps = 92/287 (32%)
Query: 25 LQLTITYSEYHDCF--MDTVEDSRALIA-NIQEHVKAM---RNLH-SDLLSSPRQ----- 72
L+ + Y +C + V++++A A N+ K + R +D LS+
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTRFKQVTDFLSAATTTHISL 291
Query: 73 -DENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGH------IPASLRIRK 125
+M L D E + K + + L R E+ + I S+R
Sbjct: 292 DHHSMTLTPD---EVKSLLLKYLDCRPQDLPR-------EVLTTNPRRLSIIAESIRDGL 341
Query: 126 TQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASI 185
H+ + +T + L+ E E R + + L S+
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--------------KMFDRL-------SV 380
Query: 186 F--NADIVTETLE---ARKALEDVQIRHQELLK---LEKSIQELR----DLFVEMALLVE 233
F +A I T L DV + +L K +EK +E +++E+ + +E
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 234 QQGD----IIDS------------------------IEHHVMEAGEA 252
+ I+D I HH+
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Score = 53.3 bits (127), Expect = 4e-08
Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 46/265 (17%)
Query: 2 GVIHWYYHQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTV---EDSRALIANIQEHVKA 58
G+ W + + +++ +++ L + +EY F A+I + +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPS-----AHIPTILLS 393
Query: 59 MRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGH-- 116
+ + D+ + D + + + V+K K+ + S+ + +K + + H
Sbjct: 394 L--IWFDV---IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 117 IPASLRIRKTQQSTTL---------------HL----LVEAITEFNQEQLDYKEKCEERI 157
I I KT S L HL E +T F LD++ E++I
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKI 507
Query: 158 QRVVSIARAEISDEKLEELLEQGNYAS-IFNADIVTETLEARKALEDVQIRHQELLKLEK 216
R S A L L + Y I + D E L A+ D + +E L K
Sbjct: 508 -RHDSTAWNASGS-ILNTLQQLKFYKPYICDNDPKYERLV--NAILDFLPKIEENLICSK 563
Query: 217 SIQELRDLFVEMALLVEQQGDIIDS 241
DL + +AL+ E + ++
Sbjct: 564 Y----TDL-LRIALMAEDEAIFEEA 583
Score = 44.5 bits (104), Expect = 3e-05
Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 43/203 (21%)
Query: 63 HSDLLSSPRQDENMKLELDARTETVKKI-AKKVSNSLKKLERSIKKEE-DEI--EDGHIP 118
H D + Q + + V K V + K + + KEE D I +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI---LSKEEIDHIIMSKDAVS 62
Query: 119 ASLR---IRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEE 175
+LR ++Q + VE + N + L I + + ++ +E+
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL------MSPI-KTEQRQPSMMTRMYIEQ 115
Query: 176 LLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRD---LFVE----- 227
N +F V+ R Q LKL +++ ELR + ++
Sbjct: 116 RDRLYNDNQVFAKYNVS--------------RLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 228 ----MALLVEQQGDIIDSIEHHV 246
+AL V + ++ +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKI 184
Score = 44.1 bits (103), Expect = 4e-05
Identities = 27/191 (14%), Positives = 65/191 (34%), Gaps = 44/191 (23%)
Query: 20 VMDQCLQLTI--------TYSEYHDCFMD---TVEDSRALIANIQEHVKAMRNLHSDLLS 68
V+++ + ++ T S +++ +E+ AL +I +H + SD L
Sbjct: 407 VVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 69 SPRQDE--------NMK-LELDARTETVKK-------IAKKVSNSLKKLERSIKKEEDEI 112
P D+ ++K +E R + + +K+ + + + +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTL 524
Query: 113 ED-----GHIPASLRIRKTQQSTTLHLLVEAITEF--NQEQLDYKEKCEERIQRVVSIAR 165
+ +I LV AI +F E+ K + ++ +
Sbjct: 525 QQLKFYKPYI--------CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 166 AEISDEKLEEL 176
I +E +++
Sbjct: 577 EAIFEEAHKQV 587
Score = 43.3 bits (101), Expect = 6e-05
Identities = 43/317 (13%), Positives = 84/317 (26%), Gaps = 103/317 (32%)
Query: 17 VSCVMDQCLQ---LTITYSEYHDCFMDTVED------SRA-LIANIQEHVKAMRN----- 61
+S + + Q +T Y E D + + SR +++ + +R
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 62 LH-------SDLLSSPRQDENMKLELD--------ARTETVKKIAKKVSNSLKKLERSIK 106
+ + + ++ ++D + + + + L+KL I
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQID 210
Query: 107 KEEDEIEDGHIPASLRIR--KTQQSTTLH-------LLV-------EAITEFNQEQLDYK 150
D LRI + + L LLV +A FN
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL------ 264
Query: 151 EKCEERI----------QRVVSIARAEISDEKLEELLEQGNYASIF--NADIVTETL--E 196
C +I + + IS + L S+ D + L E
Sbjct: 265 -SC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 197 ARK-----------ALEDVQIR-----HQELLKLEKSIQ---------ELRDLFVEMALL 231
++ D H KL I+ E R +F +++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 232 VEQQGDIIDSIEHHVME 248
I ++
Sbjct: 382 PP---SA--HIPTILLS 393
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 4e-06
Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 37/172 (21%)
Query: 108 EEDEIED---------GHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQ 158
+DE G++ +SL + ++ +L +TEF L+ + I
Sbjct: 50 ADDEPTTPAELVGKFLGYV-SSL-VEPSKVGQFDQVLNLCLTEFENCYLEGND-----IH 102
Query: 159 RVVS--IARAEISDEKLEELLEQGNYASIFNADIVTETLEARKA----LEDVQIRHQELL 212
+ + + + + K +EL++ NY A I+ + +K+ V + +L+
Sbjct: 103 ALAAKLLQENDTTLVKTKELIK--NY---ITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 213 KL-------EKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETAR 257
+ + +ELRDL+ +LV D+I + E A
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVG---DLIKFSAETLSELIRTTLDAE 206
Score = 39.6 bits (92), Expect = 8e-04
Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 67/235 (28%)
Query: 72 QDENMKLELDARTETVKKIAKKVSNSLK-KLERSIKKEEDEIEDGHIPASL--------- 121
Q++ M ++L ++ + + + N K SI D + + P +L
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSIL---DIVINN--PVNLTIHFGGEKG 1681
Query: 122 -RIRKTQQSTTLHLLVEA-------ITEFNQEQLDY-----KEKCE--ERIQR---VVSI 163
RIR+ + +V+ E N+ Y K + Q ++
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 164 ARAEISDEKLEELLEQGN--------------Y------ASIFN-ADIVTETLEAR-KAL 201
A E+L +G Y A + + +V E + R +
Sbjct: 1742 AA-------FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV-EVVFYRGMTM 1793
Query: 202 EDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETA 256
+ R EL + + + V + E +++ + G VE
Sbjct: 1794 QVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK---RTGWLVEIV 1844
Score = 31.9 bits (72), Expect = 0.28
Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 39/146 (26%)
Query: 63 HSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEI-----EDGHI 117
HS LL A + ++ L K S ++ +I DG
Sbjct: 428 HSHLLV------------PA--------SDLINKDLVKNNVSFNAKDIQIPVYDTFDGS- 466
Query: 118 PASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISD-EKLEEL 176
LR + +V+ I + ++ + + ++ S L
Sbjct: 467 --DLR---VLSGSISERIVDCIIR---LPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 177 LEQGNYASIFNADIVTETLEARKALE 202
+ G + IV TL+ +
Sbjct: 519 NKDGTGVRV----IVAGTLDINPDDD 540
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 43.4 bits (101), Expect = 1e-05
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 96 NSLKKLERSIKKEEDEIEDGHIPASLRIRKT 126
+LKKL+ S+K D+ PA L I+ T
Sbjct: 20 QALKKLQASLKLYADD----SAPA-LAIKAT 45
Score = 29.1 bits (64), Expect = 0.80
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 13/38 (34%)
Query: 209 QELLKLEKSIQELRDLFVE---MALLVEQQGDIIDSIE 243
Q L KL+ S++ L+ + AL ++ ++E
Sbjct: 20 QALKKLQASLK----LYADDSAPALAIKA------TME 47
Score = 27.6 bits (60), Expect = 3.0
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 22/47 (46%)
Query: 10 QRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSR---ALIANIQ 53
Q +K L+ S L+L Y+ +DS A+ A ++
Sbjct: 20 QALKKLQAS------LKL---YA----------DDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 43.2 bits (101), Expect = 2e-05
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 33/103 (32%)
Query: 137 EAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLE 196
E+I ++ +EQ +R+Q S +E E+
Sbjct: 85 ESIRKWREEQ-------RKRLQE-----LDAASKVMEQEWREK----------------- 115
Query: 197 ARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDII 239
A+K LE+ R E ++EK+ R + A + DII
Sbjct: 116 AKKDLEEWNQRQSE--QVEKNKINNRI--ADKAFYQQPDADII 154
Score = 33.2 bits (75), Expect = 0.054
Identities = 8/48 (16%), Positives = 23/48 (47%)
Query: 83 RTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQST 130
R E K++ + + S + +K + ++E+ + S ++ K + +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 38.2 bits (89), Expect = 0.003
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 4/142 (2%)
Query: 72 QDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIED-GHIPASLRIRKTQQST 130
+ L + ++ + L+ ++ E+E ++ + SL+ +
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998
Query: 131 TLHLLVEAITEFNQEQLDYKEKCEERIQRVVS-IARAEISDEKLEELLEQ--GNYASIFN 187
LH + YK + E+ + + + E+L +
Sbjct: 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058
Query: 188 ADIVTETLEARKALEDVQIRHQ 209
+V ET + L D ++R+Q
Sbjct: 1059 KKLVEETKQLELDLNDERLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 35.2 bits (81), Expect = 0.020
Identities = 28/186 (15%), Positives = 65/186 (34%), Gaps = 9/186 (4%)
Query: 40 DTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLK 99
D ++E V + ++ + +K + ++ ++ KK S +
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Query: 100 KLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQR 159
+LE+ +K E E D L + + + L + + +E + E+
Sbjct: 1057 ELEKIKRKLEGESSD------LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE-TS 1109
Query: 160 VVSIARAEISD--EKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKS 217
+ A +I + + +L E + + + LE ++ ++ L +
Sbjct: 1110 QKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTAT 1169
Query: 218 IQELRD 223
QELR
Sbjct: 1170 QQELRG 1175
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle,
LEFT-handed twist, membrane fusion, vesicle transport,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 32.0 bits (72), Expect = 0.069
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 38 FMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNS 97
F ++ I I + ++NL L + + ++ L + ++AK+ +
Sbjct: 12 FSSIIQTCSGNIQRISQATAQIKNL-MSQLGTKQDSSKLQENLQQLQHSTNQLAKETNEL 70
Query: 98 LKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERI 157
LK+L + + R ++ Q+ ++ A+ F Q EK +E I
Sbjct: 71 LKEL--------GSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESI 122
Query: 158 QRV 160
R
Sbjct: 123 ARS 125
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane
protein, membrane fusion protein complex, coiled coil,
transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Length = 65
Score = 27.0 bits (60), Expect = 1.2
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262
L L I + + E+ +++Q +IID + + V E + T +
Sbjct: 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 29.1 bits (64), Expect = 1.7
Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 8/183 (4%)
Query: 79 ELDARTETVKKIAKKVSNSLKKLE-----RSIKKEEDEIEDGHIPASLRIRKTQQSTTLH 133
ELD++ VK + + +K LE K + + + + + Q+ L
Sbjct: 6 ELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLK 65
Query: 134 LLVEAITEFNQEQLDYKEKCEERIQRVVS-IARAEISDEKLEELLEQGNYASIFNADIVT 192
+ + +E + + + + + E+ + K + D +
Sbjct: 66 KMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQ 125
Query: 193 ETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEA 252
E +Q Q+L KLE+ Q+ + + D S+ ++++
Sbjct: 126 NWFT--IVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSSFV 183
Query: 253 VET 255
VE
Sbjct: 184 VER 186
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 28.5 bits (63), Expect = 2.1
Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
Query: 78 LELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVE 137
+ D + ++ K +N + + ++ ++ + + + E
Sbjct: 135 IGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHE 194
Query: 138 AITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEA 197
+F EE +R++ + ++++ K EELL + N +F VT+T
Sbjct: 195 VGYDF----------LEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKTAPE 244
Query: 198 RKAL 201
++ L
Sbjct: 245 KEEL 248
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.8 bits (64), Expect = 2.1
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 24/90 (26%)
Query: 174 EELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLE------------------ 215
L+ +G + +F + + E A K E I ++L+K +
Sbjct: 11 SGLVPRG--SHMFKREEIIE--MANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 216 --KSIQELRDLFVEMALLVEQQGDIIDSIE 243
+I+ LR ++ M I+D +
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERD 96
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl
ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A
{Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Length = 460
Score = 28.4 bits (64), Expect = 2.8
Identities = 20/129 (15%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 23 QCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDA 82
Q + + + + +D +Q+ ++ D+ P D + ++LD
Sbjct: 347 QAVIIPVN--TKNVQQLDMCTA-------LQKKLRN-ELEADDMEPVPLNDWHFNVDLDI 396
Query: 83 RTETVKKIAKKVSN-SLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITE 141
R E + ++ + LK I ++E++ ++R R ++S + + +
Sbjct: 397 RNE---PVGYRIKSAILKNYSYLIIVGDEEVQLQKY--NIRERDNRKSFEKLTMSQIWEK 451
Query: 142 FNQEQLDYK 150
F + + +YK
Sbjct: 452 FIELEKNYK 460
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1
Length = 87
Score = 26.3 bits (58), Expect = 3.6
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262
+ L ++ I LR + ++M ++ Q ID I ++ A + K
Sbjct: 29 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.0 bits (62), Expect = 3.8
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 25/103 (24%)
Query: 175 ELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLE------------------- 215
L+ +G + +F + + E A K E I ++L+K +
Sbjct: 12 GLVPRG--SHMFKREEIIE--MANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPV 67
Query: 216 -KSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETAR 257
+I+ LR ++ M E +I + G
Sbjct: 68 NDTIENLRQAYLRMG-FEEYINPVIVDERDIYKQFGPEAMAVL 109
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D
3ipd_D 1urq_D 1xtg_B
Length = 66
Score = 25.4 bits (56), Expect = 5.8
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262
+ L ++ I LR + ++M ++ Q ID I ++ A + K
Sbjct: 10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 27.6 bits (61), Expect = 6.0
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 24/90 (26%)
Query: 174 EELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLE------------------ 215
L+ +G + +F + + E A K E I ++L+K +
Sbjct: 11 SGLVPRG--SHMFKREEIIE--MANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 216 --KSIQELRDLFVEMALLVEQQGDIIDSIE 243
+I+ LR ++ M I+D +
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERD 96
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Length = 315
Score = 27.1 bits (59), Expect = 6.8
Identities = 23/220 (10%), Positives = 57/220 (25%), Gaps = 5/220 (2%)
Query: 9 HQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLS 68
H + + C+++ E F D I + + S
Sbjct: 98 HTWPHIVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYES 157
Query: 69 SPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQ 128
++ +K + + L+ LE + ++I +
Sbjct: 158 FMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIAR--LEQERSTANKAN 215
Query: 129 STTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNA 188
+ L L ++ + K + + + E N A +
Sbjct: 216 AERLKRLQKSADLYKDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEARDYE- 274
Query: 189 DIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEM 228
V+++ + L + Q ++ + +R F
Sbjct: 275 --VSDSAPHLEGLAEFQENVRKTNNFSAFLANVRKAFTAT 312
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 27.3 bits (61), Expect = 7.3
Identities = 14/128 (10%), Positives = 44/128 (34%), Gaps = 6/128 (4%)
Query: 52 IQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDE 111
+Q++ + ++ L + +++ L + +++ + K+ +L+ + + E +
Sbjct: 888 LQKYNRILKKLENW-----ATTKSVYLGSNETGDSITAVQAKLK-NLEAFDGECQSLEGQ 941
Query: 112 IEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDE 171
+ ++ + + L T F Q+ K E +++ E
Sbjct: 942 SNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 1001
Query: 172 KLEELLEQ 179
L
Sbjct: 1002 DLHHHHHH 1009
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 26.7 bits (60), Expect = 8.4
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 159 RVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDV 204
V++ R + E +E+ + G A AD + + A E++
Sbjct: 57 HVLAWGRTDGVKEVADEIADGGGSAEAVVAD-LADLEGAANVAEEL 101
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 26.9 bits (59), Expect = 8.5
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 24/90 (26%)
Query: 174 EELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLE------------------ 215
L+ +G + +F + + E A K E I ++L+K +
Sbjct: 11 SGLVPRG--SHMFKREEIIE--MANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 216 --KSIQELRDLFVEMALLVEQQGDIIDSIE 243
+I+ LR ++ M I+D +
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERD 96
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle,
structural genomics, BSGC structure funded by NIH,
protein structure initiative; 2.90A {Aquifex aeolicus}
SCOP: a.7.12.1 PDB: 1t8b_A
Length = 227
Score = 26.4 bits (59), Expect = 8.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 213 KLEKSIQELRDLFVEMALLVEQQ 235
KL K ++E ++ ++MA LV++
Sbjct: 8 KLFKELEETKEQVIKMAKLVQEA 30
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare
complex, VTI1A, VAMP4, transport protein; 2.50A {Homo
sapiens}
Length = 82
Score = 25.2 bits (55), Expect = 9.4
Identities = 8/54 (14%), Positives = 24/54 (44%)
Query: 209 QELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262
++L + SI L+++ + +E+Q +++ H + ++ + K
Sbjct: 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAK 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.346
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,109,034
Number of extensions: 250568
Number of successful extensions: 911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 882
Number of HSP's successfully gapped: 131
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)