RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15387
(273 letters)
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 84.9 bits (210), Expect = 2e-21
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 33 EYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAK 92
+ D F + VE+ R I I E+V+ ++ HS +L+SP DE K EL+ +KK A
Sbjct: 3 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTAN 62
Query: 93 KVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEK 152
KV + LK +E+SI++EE A LRIRKTQ ST VE ++E+N Q DY+E+
Sbjct: 63 KVRSKLKSIEQSIEQEEGLNRS---SADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRER 119
Query: 153 CEERI 157
C+ RI
Sbjct: 120 CKGRI 124
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 196
Score = 81.3 bits (200), Expect = 2e-19
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 13/200 (6%)
Query: 38 FMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNS 97
FM+ + + + + +LH LL+ +++ L + A +
Sbjct: 7 FMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLR--HSLDNFVAQATDLQFK 64
Query: 98 LKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERI 157
LK +S +++ ++ Q + ++ I ++ +YKE+ +E+
Sbjct: 65 LKNEIKSAQRDGIHD---------TNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQA 115
Query: 158 QRVVSIARAEISDEKLEELLEQGNYASIFNADIVTET--LEARKALEDVQIRHQELLKLE 215
+R I + E +++++E + IF+ ++ EA+ AL +VQ RHQELLKLE
Sbjct: 116 KRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLE 175
Query: 216 KSIQELRDLFVEMALLVEQQ 235
KS+ EL LF +M LV +Q
Sbjct: 176 KSMAELTQLFNDMEELVIEQ 195
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
typhimurium [TaxId: 90371]}
Length = 417
Score = 30.7 bits (69), Expect = 0.18
Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 21/124 (16%)
Query: 69 SPRQDENMKLELDARTETVKKI----AKKVSNSLKKLERSIKKEEDEIEDGH------IP 118
+P E + + A +K+ V +L +I EI D P
Sbjct: 1 TPFTHETLPADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQGQPVWP 60
Query: 119 ASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLE 178
+ + + K + I+ +A D+ + + L+
Sbjct: 61 -IIPFSELAMGNISDATRAEV----------KRRGCAVIKGHFPREQALAWDQSMLDYLD 109
Query: 179 QGNY 182
+ ++
Sbjct: 110 KNHF 113
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
olivochromogenes [TaxId: 1963]}
Length = 386
Score = 30.7 bits (69), Expect = 0.18
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 158 QRVVSIARAEISDEKLEELLEQGNYASI---FNADIVTETLEARKALEDVQI-------R 207
+ A A +D +++E L + AD V E L R A ED +
Sbjct: 310 LILKERAAAFRADPEVQEALRASRLDELAQPTAADGVQELLADRTAFEDFDVDAAAARGM 369
Query: 208 HQELLK 213
E L
Sbjct: 370 AFERLD 375
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 27.9 bits (61), Expect = 1.4
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 33 EYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAK 92
++HD + +E R + I + AM N + + + E+M+ D + I +
Sbjct: 25 KHHDAAHEIIETIRWVCEEIPDLKLAMEN-YVLIDYDTKSFESMQRLCDKYNRAIDSIHQ 83
Query: 93 KVSNSLKKLERSIK 106
+ + ++ + +
Sbjct: 84 LWKGTTQPMKLNTR 97
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 27.6 bits (60), Expect = 1.6
Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 6/165 (3%)
Query: 21 MDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLEL 80
+ Q F + + + + L +SS ++ + L L
Sbjct: 174 LKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDL-L 232
Query: 81 DARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGH--IPASLRIRKTQQSTTLHLLVEA 138
D + + KK+ K + + LR K + T V+
Sbjct: 233 DRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDL 292
Query: 139 ITEFNQEQL---DYKEKCEERIQRVVSIARAEISDEKLEELLEQG 180
+F E + D K E + +++ R + + L++L
Sbjct: 293 EKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAA 337
>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
1542]}
Length = 540
Score = 27.2 bits (60), Expect = 2.2
Identities = 13/125 (10%), Positives = 44/125 (35%), Gaps = 9/125 (7%)
Query: 67 LSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKT 126
L + E+ K+ ++ + + + I + + E++ + +++ +
Sbjct: 142 LKTAIIQESSKVIIEQNQSNILDGTYGHNKFYSDRMKLIYRYKRELKMLYE--NMKQNNS 199
Query: 127 QQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVV-------SIARAEISDEKLEELLEQ 179
++ L + + KE ++ + +I ++ +EL++
Sbjct: 200 VDDIIINFLSNYFKYDIGKLNNQKENNNNKMIAIGATDINTENILTNKLKSYYYQELIQT 259
Query: 180 GNYAS 184
N A+
Sbjct: 260 NNLAA 264
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
[TaxId: 1396]}
Length = 417
Score = 26.8 bits (59), Expect = 3.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 30 TYSEYHDCFMDTVEDSRALIANIQ 53
Y E + F ++ + +IA I
Sbjct: 141 EYGELYTAFAAAMKPYKDVIAKIY 164
>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus
[TaxId: 63363]}
Length = 106
Score = 25.5 bits (56), Expect = 3.4
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 55 HVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIED 114
H K +R + P E E +KK ++V +K+ I EED
Sbjct: 1 HYKTLRYYETVFAVKPTLSE----------EEMKKKFEQVKEFIKQKGGEILYEEDW--- 47
Query: 115 GHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEK 172
G + I+K + + + +LD++ K +E + R ++I E +K
Sbjct: 48 GMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQLKIDEDVIRWLNIQIKESEVKK 105
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 471
Score = 25.8 bits (56), Expect = 6.8
Identities = 8/55 (14%), Positives = 25/55 (45%)
Query: 36 DCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKI 90
+C ++ + + ++ E + ++++ D + + +EL A +K+I
Sbjct: 292 NCHRESEQKLKDIVKQKFERKEFLQDIAFDNIGKAHLETGKAMELGATDAELKEI 346
>d2pd1a1 d.58.4.11 (A:1-100) Hypothetical protein NE2512
{Nitrosomonas europaea [TaxId: 915]}
Length = 100
Score = 24.3 bits (52), Expect = 9.7
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 13 KALRVSCVMDQCLQLTITYSEYHD-CFMDTVEDSRALIANIQ-EHVKAMRNLHSDLLSSP 70
AL ++ D D A++ + A+ + LLSSP
Sbjct: 26 SALPLANAESGTTAWFALKFGPSTFGVFDAFADEAGRQAHLNGQIAAALMANAATLLSSP 85
Query: 71 RQDENMKL 78
E ++L
Sbjct: 86 PNIEKVEL 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.346
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 970,240
Number of extensions: 44956
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 40
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)