Query psy15388
Match_columns 217
No_of_seqs 117 out of 857
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 19:42:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nut_C Vesicle-trafficking pro 100.0 9.4E-55 3.2E-59 357.1 6.4 193 1-194 2-196 (196)
2 4b93_A Vesicle-associated memb 100.0 6.4E-53 2.2E-57 344.4 1.3 184 2-196 4-189 (189)
3 3kyq_A YKT6, synaptobrevin hom 100.0 6.6E-39 2.2E-43 263.1 0.4 172 13-192 17-196 (199)
4 4afi_A AP-3 complex subunit de 99.9 8.5E-28 2.9E-32 192.8 5.8 116 2-128 56-172 (173)
5 3bw6_A Synaptobrevin homolog Y 99.9 7.2E-25 2.4E-29 171.2 8.4 128 1-134 5-144 (144)
6 2vx8_A Nucleoporin-like protei 99.9 5.6E-25 1.9E-29 175.9 3.4 117 2-129 46-163 (169)
7 2nps_A VAMP-4, vesicle-associa 99.9 2.8E-24 9.5E-29 149.5 -4.8 70 128-197 3-73 (74)
8 1l4a_A Synaptobrevin; snare, s 99.9 1.2E-23 4.1E-28 148.4 -1.8 69 129-197 11-80 (80)
9 3hd7_A Vesicle-associated memb 99.8 1.1E-24 3.8E-29 157.2 -9.6 73 131-203 3-76 (91)
10 2kog_A Vesicle-associated memb 99.8 6.1E-24 2.1E-28 160.3 -6.8 74 130-203 30-104 (119)
11 1sfc_A VAMP 2, protein (synapt 99.8 7.5E-23 2.6E-27 148.9 -7.1 68 130-197 27-95 (96)
12 1n7s_A Vesicle-associated memb 99.8 6.3E-22 2.2E-26 133.5 -5.3 62 130-191 1-63 (63)
13 3b5n_A Synaptobrevin homolog 1 99.8 9.7E-22 3.3E-26 131.6 -5.2 60 132-191 1-61 (61)
14 1gl2_A Endobrevin; membrane pr 99.7 4.1E-20 1.4E-24 125.2 -2.5 61 128-188 4-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.6 3.6E-17 1.2E-21 109.5 -4.4 58 133-190 4-62 (63)
16 3fie_C Fragment of vesicle-ass 98.6 5E-10 1.7E-14 67.2 -3.7 32 130-161 6-37 (38)
17 3zym_A Phosphatidylinositol-bi 98.3 8.3E-08 2.8E-12 83.2 1.2 51 113-163 245-310 (310)
18 2fz0_A R-snare NYV1P, V-snare 96.3 0.0027 9.4E-08 47.7 3.5 59 35-93 49-114 (149)
19 2fh5_A Signal recognition part 95.9 0.0083 2.8E-07 47.9 4.8 90 5-102 15-106 (185)
20 2vgl_S AP-2 complex subunit si 92.8 0.47 1.6E-05 35.6 7.9 95 1-100 1-96 (142)
21 1w63_Q Adapter-related protein 92.0 0.63 2.2E-05 35.7 7.7 94 1-100 1-96 (158)
22 2j3t_C Trafficking protein par 88.3 0.93 3.2E-05 34.3 5.8 87 38-126 46-137 (145)
23 3tjz_C Coatomer subunit zeta-1 87.9 1.8 6.2E-05 33.0 7.2 61 37-99 45-105 (153)
24 2j3w_A Sedlin, trafficking pro 86.5 2 6.8E-05 32.2 6.7 87 40-127 50-140 (142)
25 2j3t_D Trafficking protein par 83.6 3.3 0.00011 33.6 7.0 91 37-129 118-212 (219)
26 3cue_C Transport protein parti 83.3 2.1 7.3E-05 32.8 5.6 59 37-97 51-113 (159)
27 1w63_M Adaptor-related protein 78.9 4.6 0.00016 35.7 6.9 48 53-100 49-96 (423)
28 3cue_A Transport protein parti 76.3 6.6 0.00023 31.8 6.5 77 50-126 118-218 (219)
29 2vgl_M AP-2 complex subunit MU 75.8 5.3 0.00018 35.4 6.4 91 1-100 1-94 (435)
30 1txp_A HnRNP C, heterogeneous 54.7 6 0.0002 21.2 1.4 24 137-164 3-26 (28)
31 3leq_A Uncharacterized protein 34.9 1.2E+02 0.004 21.7 6.5 80 11-90 27-111 (126)
32 1j3w_A Giding PROTEIN-MGLB; gl 31.2 1.7E+02 0.0057 22.0 8.5 86 11-97 37-131 (163)
33 2ygg_A Sodium/hydrogen exchang 21.3 60 0.0021 21.3 2.3 23 138-160 5-27 (70)
34 2hz5_A Dynein light chain 2A, 20.1 1.6E+02 0.0056 20.6 4.7 65 11-77 35-104 (106)
No 1
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=9.4e-55 Score=357.09 Aligned_cols=193 Identities=47% Similarity=0.744 Sum_probs=125.7
Q ss_pred ChhhhhHHHhhcCceeeeeeccccc-cccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeecccc
Q psy15388 1 MFLLTMIARVRDGLILSASMQDDEY-SERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTF 79 (217)
Q Consensus 1 mI~~~~IaR~~D~l~L~~~~~~~~~-~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~ 79 (217)
||+|++|||++|++|||++++.... ++ +.++|+++++.++++++++.++|+|++.++|.|||+.++|++|+|||+++|
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~-~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGR-DLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC------CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccc-cHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 9999999999999999999853212 22 467899999999999997668999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhhccCccceeccceeEEeechHHHHHHHHhhhhhhhcccccchhhhhHHHHHHhhchhhHHHh
Q psy15388 80 STKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINAT 159 (217)
Q Consensus 80 p~~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~l~~~yn~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~R 159 (217)
|+++||.||++|+++|...|+..+.+..+|+++.+|++.|+++|++|++++.+|+|.+++.+|+||++||.+||+++|+|
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~R 160 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQR 160 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHTTTSCCC-----------------CCEEEHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHhccchhccccCCCchHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999876655557899899999999999999999899999999999999999999999999999
Q ss_pred hhHhhhcCccc-cccCCCcceeecCCCCCccCCCCC
Q psy15388 160 MNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIP 194 (217)
Q Consensus 160 gekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~ 194 (217)
||+||.|++|| +|+.+|..|+++|++++|+|||+.
T Consensus 161 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 161 GEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp ------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999 999999999999999999999974
No 2
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=6.4e-53 Score=344.37 Aligned_cols=184 Identities=21% Similarity=0.350 Sum_probs=141.1
Q ss_pred hhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccch
Q psy15388 2 FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFST 81 (217)
Q Consensus 2 I~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p~ 81 (217)
|+|++|||+ ++|||+|+.. .++|..+++.+|+++|+ .++|+|+++|+|.|||+.++|++|+||||.+||+
T Consensus 4 ilYa~VArg--~~iLae~t~~-------~gnf~~ia~~iL~kip~-~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~ 73 (189)
T 4b93_A 4 ILFAVVARG--TTILAKHAWC-------GGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFER 73 (189)
T ss_dssp EEEEEEEET--TEEEEEEESS-------EECHHHHHHHHHTTCCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred eEEEEEEeC--CEEEEeCCCC-------CCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCH
Confidence 799999996 7899999842 25899999999999997 6899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccCccceeccceeE-EeechHHHHHHHHhhhhhhhcccccchhhhhHHHHHHhhchhhHHHhh
Q psy15388 82 KVAYSYLESLSLEFHGQYGGQFEQCTRPYAF-VEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATM 160 (217)
Q Consensus 82 ~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~-~~F~~~l~~l~~~yn~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~Rg 160 (217)
++||.||++|+++|.+.|+..+.++. |+.+ .+|++.|+++|++|++++.+|++.+++++|+||++||.+||+++|+||
T Consensus 74 r~af~fL~~i~~eF~~~~~~~~~~~~-~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rg 152 (189)
T 4b93_A 74 SRAFSFLNEVKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRG 152 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGTCC-TTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCBCTTS
T ss_pred HHHHHHHHHHHHHHHhhccccccccC-CccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987666654 5555 789999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcc
Q psy15388 161 NLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQ 196 (217)
Q Consensus 161 ekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~ 196 (217)
|+||.|++|| +|+.+|..|+++|++|+|+|||++.+
T Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 153 ERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp SBCCCCEETTCC-------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999 99999999999999999999999864
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=6.6e-39 Score=263.10 Aligned_cols=172 Identities=12% Similarity=0.213 Sum_probs=144.9
Q ss_pred Cceeeeeeccccc---cccchhhhhhHH-HHHHHHhCCCCCCceeeeccceeee-eeeecceEEEEeeccccchhHHHHH
Q psy15388 13 GLILSASMQDDEY---SERSTLEYQNQA-KQLFRKLNLNSPAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSY 87 (217)
Q Consensus 13 ~l~L~~~~~~~~~---~~~~~~~f~~~a-~~il~~i~~~~~~k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~f 87 (217)
.++|++..+-... .-.+.++|...+ +.|+++++| ++|+|+++++|.|| |+.++|++|+||||.+||+++||.|
T Consensus 17 ~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~f 94 (199)
T 3kyq_A 17 AVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTL 94 (199)
T ss_dssp EEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEEEEEETTSCHHHHHHH
T ss_pred ceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEEEEECCCCCHHHHHHH
Confidence 3567777743111 123356666655 589999886 68999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhhccCccc--eeccceeEEeechHHHHHHHHhhhhhhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhh
Q psy15388 88 LESLSLEFHGQYGGQFE--QCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLG 165 (217)
Q Consensus 88 L~ei~~~F~~~~~~~~~--~~~~~~~~~~F~~~l~~l~~~yn~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~ 165 (217)
|++|+++|.+.|+...+ ...+++. | +.++++|.+|++++.+|++.+++++|+||++||.+||+++|+|||+||.
T Consensus 95 L~ei~~eF~~~~~~~~~~~~~~~~~~---f-~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~ 170 (199)
T 3kyq_A 95 LEKVLDEFSKQVDRIDWPVGSPATIH---Y-TALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDD 170 (199)
T ss_dssp HHHHHHHHHHHSCGGGSTTCCTTTCC---C-CTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHH
T ss_pred HHHHHHHHHHhccchhhhcccccccc---c-HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 99999999999974322 2234553 6 6799999999999889999999999999999999999999999999999
Q ss_pred cCccc-cccCCCcceeecCCCCCccCCC
Q psy15388 166 LGNQI-DLTGIPDQVRLLGLPDKHTLSG 192 (217)
Q Consensus 166 L~~kt-~L~~~S~~F~~~a~klkr~m~~ 192 (217)
|++|| +|+.+|..|+++|+++++ ||
T Consensus 171 L~~ks~~L~~~s~~F~k~a~~lns--Cc 196 (199)
T 3kyq_A 171 LVSKSEVLGTQSKAFYKTARKQNS--CC 196 (199)
T ss_dssp HHHHCSSSCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence 99999 999999999999999987 65
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=99.94 E-value=8.5e-28 Score=192.83 Aligned_cols=116 Identities=26% Similarity=0.501 Sum_probs=106.3
Q ss_pred hhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccch
Q psy15388 2 FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFST 81 (217)
Q Consensus 2 I~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p~ 81 (217)
|+|++|||+ .+|||+++.. .++|..+++.+|+++++ .++|++++.++|.|||++++|++|+||||.+||+
T Consensus 56 I~Ya~VArg--~tiLAE~t~~-------~gnf~~va~~iL~kip~-~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~r 125 (173)
T 4afi_A 56 ILFAVVARG--TTILAKHAWC-------GGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFER 125 (173)
T ss_dssp EEEEEEEET--TEEEEEEESS-------CCCHHHHHHHHHTTSCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred EEEEEEECC--CEEEEEccCC-------CCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEECCEEEEEEECCccCh
Confidence 899999997 5999999842 25899999999999997 5789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccCccceeccceeEE-eechHHHHHHHHhhh
Q psy15388 82 KVAYSYLESLSLEFHGQYGGQFEQCTRPYAFV-EFDSSIKKLRKSFTD 128 (217)
Q Consensus 82 ~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~~-~F~~~l~~l~~~yn~ 128 (217)
++||+||++|+++|.+.|+..+.++ +||++. +|++.|+++|++||+
T Consensus 126 r~aF~FLedI~~eF~~~yg~~~~ta-~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 126 SRAFSFLNEVKKRFQTTYGSRAQTA-LPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGTC-CTTTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhchhhhhc-cCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999999999998766554 799995 999999999999986
No 5
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.91 E-value=7.2e-25 Score=171.19 Aligned_cols=128 Identities=18% Similarity=0.286 Sum_probs=101.9
Q ss_pred Chhhhh-HHHhhc--Cceeeeeeccccc---cccchhhh-hhHHHHHHHHhCCCCCCceeeeccceeeeee-eecceEEE
Q psy15388 1 MFLLTM-IARVRD--GLILSASMQDDEY---SERSTLEY-QNQAKQLFRKLNLNSPAKLSIETGNYFFHYL-IDRGVCFL 72 (217)
Q Consensus 1 mI~~~~-IaR~~D--~l~L~~~~~~~~~---~~~~~~~f-~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l-~~~~i~~~ 72 (217)
|.+|++ |+|+.| +++|+++++-... +-.+.++| ..+++.|++|+++ ++|+|++.++|.|||+ .++|++|+
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~--~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA--GQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT--TEEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC--CceEEEEeCCEEEEEEEecCCEEEE
Confidence 556666 999877 8999999853111 11122666 8899999999997 5899999999999999 78999999
Q ss_pred EeeccccchhHHHHHHHHHHHHHhhhccCc-cceecc---ceeEEeechHHHHHHHHhhhhhhhcc
Q psy15388 73 ALCEKTFSTKVAYSYLESLSLEFHGQYGGQ-FEQCTR---PYAFVEFDSSIKKLRKSFTDTRVRRN 134 (217)
Q Consensus 73 ~it~~~~p~~~af~fL~ei~~~F~~~~~~~-~~~~~~---~~~~~~F~~~l~~l~~~yn~~~~~dk 134 (217)
||||.+||+|+||.||++|+++|.++|+.. +.++.+ ++. | +.|++.|++|++|+++|+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~---f-~~l~~~i~kYqdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALK---M-KQLDTYISKYQDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGC---C-THHHHHHHHTSCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcc---h-HHHHHHHHHhCchhhcCC
Confidence 999999999999999999999999999866 655555 554 4 789999999999887775
No 6
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.90 E-value=5.6e-25 Score=175.87 Aligned_cols=117 Identities=26% Similarity=0.498 Sum_probs=100.6
Q ss_pred hhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccch
Q psy15388 2 FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFST 81 (217)
Q Consensus 2 I~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p~ 81 (217)
|+|++|+|+ ++||++++.. .++|+.+++.+++++++ .++|++++.++|.|||+.++|++|+||||++||+
T Consensus 46 ilYa~VaRG--~~VLae~t~~-------~gnf~~iak~ll~kl~~-~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~ 115 (169)
T 2vx8_A 46 ILFAVVARG--TTILAKHAWC-------GGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFER 115 (169)
T ss_dssp CCEEEEEET--TEEEEEEESS-------CBSHHHHHHHHHTTSCS-SCEEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred eEEEEEEcC--CEEEEEeccC-------CCCHHHHHHHHHhhCCC-CCCceEEEECCEEEEEEEECCEEEEEEEccccch
Confidence 899999996 7999999842 25899999999999998 5789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccCccceeccceeEE-eechHHHHHHHHhhhh
Q psy15388 82 KVAYSYLESLSLEFHGQYGGQFEQCTRPYAFV-EFDSSIKKLRKSFTDT 129 (217)
Q Consensus 82 ~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~~-~F~~~l~~l~~~yn~~ 129 (217)
++||.||++|+++|.+.|+..+..+ +++++. +|++.|++.|++|+++
T Consensus 116 r~AF~fLedI~~eF~~~y~~~~~~a-~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 116 SRAFSFLNEVKKRFQTTYGSRAQTA-LPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGTC-CTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcc-CCcchhHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998766555 689996 9999999999999764
No 7
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.86 E-value=2.8e-24 Score=149.50 Aligned_cols=70 Identities=9% Similarity=0.049 Sum_probs=61.6
Q ss_pred hhhhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcce
Q psy15388 128 DTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQV 197 (217)
Q Consensus 128 ~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~ 197 (217)
+|+..|+|.+++.+|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++++|+|||++.++
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~ 73 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKI 73 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678899999999999999999999999999999999999999 999999999999999999999999876
No 8
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.86 E-value=1.2e-23 Score=148.35 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=61.5
Q ss_pred hhhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcce
Q psy15388 129 TRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQV 197 (217)
Q Consensus 129 ~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~ 197 (217)
++..|+|.+++.+|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++++|+|||++.++
T Consensus 11 ~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 11 VQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999999999999999999999 999999999999999999999998864
No 9
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.84 E-value=1.1e-24 Score=157.21 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=70.0
Q ss_pred hhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcceeeeecC
Q psy15388 131 VRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGL 203 (217)
Q Consensus 131 ~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~~~~~~~ 203 (217)
++|++.+++++|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++++|+|||++.++.+++|+
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~ 76 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGV 76 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999 999999999999999999999999999888764
No 10
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.84 E-value=6.1e-24 Score=160.28 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=70.8
Q ss_pred hhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcceeeeecC
Q psy15388 130 RVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGL 203 (217)
Q Consensus 130 ~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~~~~~~~ 203 (217)
+..|++.+++++|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++++|+|||++.++.+++|+
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~ 104 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGV 104 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999 999999999999999999999999998887764
No 11
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.81 E-value=7.5e-23 Score=148.85 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=64.5
Q ss_pred hhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcce
Q psy15388 130 RVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQV 197 (217)
Q Consensus 130 ~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~ 197 (217)
+..|+|.+++.+|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++|+|+|||++.++
T Consensus 27 ~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~ 95 (96)
T 1sfc_A 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM 95 (96)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46899999999999999999999999999999999999999 999999999999999999999999875
No 12
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.79 E-value=6.3e-22 Score=133.45 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=60.2
Q ss_pred hhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCC
Q psy15388 130 RVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLS 191 (217)
Q Consensus 130 ~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~ 191 (217)
|.+|++.+++.+|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++++|+||
T Consensus 1 ~~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 1 GSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35789999999999999999999999999999999999999 999999999999999999999
No 13
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.78 E-value=9.7e-22 Score=131.65 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=58.5
Q ss_pred hcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCC
Q psy15388 132 RRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLS 191 (217)
Q Consensus 132 ~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~ 191 (217)
.|++.+++.+|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++|+|+||
T Consensus 1 gd~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 1 GSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 378999999999999999999999999999999999999 999999999999999999999
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.74 E-value=4.1e-20 Score=125.22 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=51.9
Q ss_pred hhhhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCc
Q psy15388 128 DTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKH 188 (217)
Q Consensus 128 ~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr 188 (217)
+|+.+|+|.+++.+|+||+.||.+||+++|+|||+||.|++|| +|+.+|..|+++|++|+|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4568899999999999999999999999999999999999999 999999999999999986
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.56 E-value=3.6e-17 Score=109.54 Aligned_cols=58 Identities=5% Similarity=-0.018 Sum_probs=54.7
Q ss_pred cccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccC
Q psy15388 133 RNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTL 190 (217)
Q Consensus 133 dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m 190 (217)
.++.+++.++++|++||.+||+++++|||+|+.|++|| +|..+|..|.+.|++|+++|
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999999999 99999999999999998876
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.63 E-value=5e-10 Score=67.22 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=30.2
Q ss_pred hhhcccccchhhhhHHHHHHhhchhhHHHhhh
Q psy15388 130 RVRRNLNTLNTELQDVQRIMVQNIDDINATMN 161 (217)
Q Consensus 130 ~~~dkl~~i~~~l~evk~iM~~NIdkiL~Rge 161 (217)
+..|++.+++.+|+||++||.+||+++|+||+
T Consensus 6 ~~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 6 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 45799999999999999999999999999996
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.35 E-value=8.3e-08 Score=83.18 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=33.6
Q ss_pred EeechHHHHHHHHhhh---------------hhhhcccccchhhhhHHHHHHhhchhhHHHhhhHh
Q psy15388 113 VEFDSSIKKLRKSFTD---------------TRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLV 163 (217)
Q Consensus 113 ~~F~~~l~~l~~~yn~---------------~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekL 163 (217)
..|.....++.+.|.. .+..|++.++|+||+||++||.+|||++|+|||+|
T Consensus 245 krf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 245 KKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 4556666666666654 23468999999999999999999999999999986
No 18
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0027 Score=47.75 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=47.2
Q ss_pred hHHHHHHHHhCCC---CCCceeee-ccceeeeeeee---cceEEEEeeccccchhHHHHHHHHHHH
Q psy15388 35 NQAKQLFRKLNLN---SPAKLSIE-TGNYFFHYLID---RGVCFLALCEKTFSTKVAYSYLESLSL 93 (217)
Q Consensus 35 ~~a~~il~~i~~~---~~~k~s~~-~~~~~~h~l~~---~~i~~~~it~~~~p~~~af~fL~ei~~ 93 (217)
.+...+++++-|- +-.|+|.. .+||.++|.+. ++.+++|.|..+.|+-++...|.++++
T Consensus 49 Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 49 LIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 3455677887764 34466666 58999999883 578999999999999999999999986
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=95.94 E-value=0.0083 Score=47.86 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=56.5
Q ss_pred hhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeec--ceEEEEeeccccchh
Q psy15388 5 TMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDR--GVCFLALCEKTFSTK 82 (217)
Q Consensus 5 ~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~--~i~~~~it~~~~p~~ 82 (217)
+++-|+ |+||-+++.. .... ......+++.++=.=+ .+..++.+++|.+.|..++ +++||+|=..-.+-.
T Consensus 15 ~IfTkG--GvVLWs~~~~-~~~~--~~~IN~LIr~VlLEER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~ 86 (185)
T 2fh5_A 15 TIFSKG--GLVLWCFQGV-SDSC--TGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLT 86 (185)
T ss_dssp EEEETT--SBEEEEEBTT-TBSC--CCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGHH
T ss_pred EEEeCC--eEEEEeecCC-cccc--cchHHHHHHHhhhccc---cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccch
Confidence 444554 9999876421 1110 1234444444443222 2334688999999998875 699999977777777
Q ss_pred HHHHHHHHHHHHHhhhccCc
Q psy15388 83 VAYSYLESLSLEFHGQYGGQ 102 (217)
Q Consensus 83 ~af~fL~ei~~~F~~~~~~~ 102 (217)
-.=.||+.|+..|...|...
T Consensus 87 YiD~LL~~v~~~Fv~~Y~~~ 106 (185)
T 2fh5_A 87 YVDKLIDDVHRLFRDKYRTE 106 (185)
T ss_dssp HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77799999999999999644
No 20
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=92.84 E-value=0.47 Score=35.64 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=59.0
Q ss_pred ChhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCC-CceeeeccceeeeeeeecceEEEEeecccc
Q psy15388 1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSP-AKLSIETGNYFFHYLIDRGVCFLALCEKTF 79 (217)
Q Consensus 1 mI~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~-~k~s~~~~~~~~h~l~~~~i~~~~it~~~~ 79 (217)
||.+.+|.= +.|-++.+-.-. .. +...-+.+.+.+.+.+....+ .--.++.+++.+-|...+++.|+|+++.+.
T Consensus 1 MI~~i~i~~-~~Gk~~l~k~y~-~~---~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~ 75 (142)
T 2vgl_S 1 MIRFILIQN-RAGKTRLAKWYM-QF---DDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVND 75 (142)
T ss_dssp CEEEEEEEE-TTSCEEEEEECS-CC---CHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred CeEEEEEEc-CCCCEEEEEeCC-CC---ChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCC
Confidence 666666653 345555443311 01 111233344444444433211 222455678888888889999999999999
Q ss_pred chhHHHHHHHHHHHHHhhhcc
Q psy15388 80 STKVAYSYLESLSLEFHGQYG 100 (217)
Q Consensus 80 p~~~af~fL~ei~~~F~~~~~ 100 (217)
+.-..+.||..+.+-+..-++
T Consensus 76 N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 76 NNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHc
Confidence 999999999988887776554
No 21
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.96 E-value=0.63 Score=35.68 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=58.7
Q ss_pred ChhhhhHHHhhcCceeee-eeccccccccchhhhhhHHHHHHHHhCCCCCC-ceeeeccceeeeeeeecceEEEEeeccc
Q psy15388 1 MFLLTMIARVRDGLILSA-SMQDDEYSERSTLEYQNQAKQLFRKLNLNSPA-KLSIETGNYFFHYLIDRGVCFLALCEKT 78 (217)
Q Consensus 1 mI~~~~IaR~~D~l~L~~-~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~-k~s~~~~~~~~h~l~~~~i~~~~it~~~ 78 (217)
||.+.+|.= +.|-++.+ +... .+ ...-..+.+.+.+.+....+. --.++.+++.|.|...+++.|+|+++.+
T Consensus 1 MI~~i~Il~-~~Gk~~lsk~y~~--~~---~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~ 74 (158)
T 1w63_Q 1 MMRFMLLFS-RQGKLRLQKWYLA--TS---DKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQ 74 (158)
T ss_dssp CEEEEEEEC-SSSCEEEEEESSC--CC---HHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSS
T ss_pred CeEEEEEEC-CCCCEEEEEeCCC--CC---HHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCC
Confidence 666666653 34555544 3321 11 111123344444444432112 2245567888888888999999999999
Q ss_pred cchhHHHHHHHHHHHHHhhhcc
Q psy15388 79 FSTKVAYSYLESLSLEFHGQYG 100 (217)
Q Consensus 79 ~p~~~af~fL~ei~~~F~~~~~ 100 (217)
.+.-..+.||..+.+-+..-++
T Consensus 75 ~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 75 DNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999988877766554
No 22
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=88.31 E-value=0.93 Score=34.32 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=56.3
Q ss_pred HHHHHHhCCC--CCCceeeeccceeee-eeeecceEEEEeeccccchhHHHHHHHHHH-HHHhhhcc-CccceeccceeE
Q psy15388 38 KQLFRKLNLN--SPAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLS-LEFHGQYG-GQFEQCTRPYAF 112 (217)
Q Consensus 38 ~~il~~i~~~--~~~k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~fL~ei~-~~F~~~~~-~~~~~~~~~~~~ 112 (217)
..+.+++.|. ...-.+++.++|.+| |.+-.|+=|+++||+..+. .-.||.+|. +.|..-.- ++.-....|-..
T Consensus 46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s 123 (145)
T 2j3t_C 46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGP--IRDVLHHIYSALYVEFVVKNPLCPLGQTVQS 123 (145)
T ss_dssp HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCCC--CHHHHHHHHHTTHHHHTTTCTTSCTTSCCCC
T ss_pred HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcch--HHHHHHHHHHHHHHHHHhcCCCCCCCCceec
Confidence 4467788873 234577888899777 6667899999999987554 557888888 56654211 222111122222
Q ss_pred EeechHHHHHHHHh
Q psy15388 113 VEFDSSIKKLRKSF 126 (217)
Q Consensus 113 ~~F~~~l~~l~~~y 126 (217)
..|+..++++++++
T Consensus 124 ~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 124 ELFRSRLDSYVRSL 137 (145)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhC
Confidence 46888888887655
No 23
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=87.92 E-value=1.8 Score=33.01 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccchhHHHHHHHHHHHHHhhhc
Q psy15388 37 AKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQY 99 (217)
Q Consensus 37 a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~ 99 (217)
.+.+..++.. .+ .-.+..+++.+.|....++.|+|+++.+...-..+.||..+-+.+..-+
T Consensus 45 e~~i~~~~~r-~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 45 EKNIFNKTHR-TD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHSS-CC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHHHHHHHHHHHHHHHHh
Confidence 4445555543 22 2356678999999988999999999999999999999999888887766
No 24
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=86.49 E-value=2 Score=32.25 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=53.4
Q ss_pred HHHHhCCCCCC---ceeeeccceeee-eeeecceEEEEeeccccchhHHHHHHHHHHHHHhhhccCccceeccceeEEee
Q psy15388 40 LFRKLNLNSPA---KLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEF 115 (217)
Q Consensus 40 il~~i~~~~~~---k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~~~F 115 (217)
+++++.+..++ ..+...++|.+| |.+-.|+=|+.++++. .....-.||.+|.+.|....-++.-....|-....|
T Consensus 50 iv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~F 128 (142)
T 2j3w_A 50 LVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAF 128 (142)
T ss_dssp HHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHH
T ss_pred HHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHH
Confidence 55555432223 355556677666 6777899999999973 234456888898887776322322111112222468
Q ss_pred chHHHHHHHHhh
Q psy15388 116 DSSIKKLRKSFT 127 (217)
Q Consensus 116 ~~~l~~l~~~yn 127 (217)
+..+++++++|-
T Consensus 129 d~~v~~~~~~~l 140 (142)
T 2j3w_A 129 DRKVQFLGKKHL 140 (142)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 888888887763
No 25
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=83.61 E-value=3.3 Score=33.61 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=60.4
Q ss_pred HHHHHHHhCCC--CCCceeeeccceeee-eeeecceEEEEeeccccchhHHHHHHHHHHHHHhhhcc-CccceeccceeE
Q psy15388 37 AKQLFRKLNLN--SPAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYG-GQFEQCTRPYAF 112 (217)
Q Consensus 37 a~~il~~i~~~--~~~k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~~-~~~~~~~~~~~~ 112 (217)
.+.+..++.|. ...-.+++.+.|.+| |.+-.|+-|+++|++.. .-.-.||.+|.+.|....- +..-....|-..
T Consensus 118 Ld~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~--~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s 195 (219)
T 2j3t_D 118 LFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQ--AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRC 195 (219)
T ss_dssp HHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTC--CCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCC
T ss_pred HHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCc--hHHHHHHHHHHHHHHHHhccCCCCCCCCccch
Confidence 45567788873 124467778899777 66678999999999863 3356888898877765312 322211122223
Q ss_pred EeechHHHHHHHHhhhh
Q psy15388 113 VEFDSSIKKLRKSFTDT 129 (217)
Q Consensus 113 ~~F~~~l~~l~~~yn~~ 129 (217)
..|+..++++++.++..
T Consensus 196 ~~Fd~~v~~l~~~~~~~ 212 (219)
T 2j3t_D 196 ELFDQNLKLALEVAEKA 212 (219)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 46899999999888653
No 26
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=83.32 E-value=2.1 Score=32.84 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCC--CCceeeeccceeee-eeeecceEEEEeeccccchhHHHHHHHHHHH-HHhh
Q psy15388 37 AKQLFRKLNLNS--PAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSL-EFHG 97 (217)
Q Consensus 37 a~~il~~i~~~~--~~k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~fL~ei~~-~F~~ 97 (217)
++.+.+++.|.. +.-.+++.+.|.+| |.+-.|+-||++||...+. .-.+|.+|.. .|..
T Consensus 51 L~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 51 LRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQS--YTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSSC--THHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcch--HHHHHHHHHHHHHHH
Confidence 344677888742 45667778899887 5666899999999987543 4577888886 6654
No 27
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=78.91 E-value=4.6 Score=35.65 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=40.8
Q ss_pred eeeccceeeeeeeecceEEEEeeccccchhHHHHHHHHHHHHHhhhcc
Q psy15388 53 SIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYG 100 (217)
Q Consensus 53 s~~~~~~~~h~l~~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~~ 100 (217)
.++.+++.|.|...+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 49 ILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESSCCCTHHHHHHHHHHHHHHHHHSS
T ss_pred EEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888889999999999999999999999998877766443
No 28
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=76.28 E-value=6.6 Score=31.81 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=48.1
Q ss_pred Cceeeeccceeee-eeeecceEEEEeeccccch----------------------hHHHHHHHHHHHHHhhhcc-Cccce
Q psy15388 50 AKLSIETGNYFFH-YLIDRGVCFLALCEKTFST----------------------KVAYSYLESLSLEFHGQYG-GQFEQ 105 (217)
Q Consensus 50 ~k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~----------------------~~af~fL~ei~~~F~~~~~-~~~~~ 105 (217)
+-..+..+.|.+| |.+-.|+=||+++++..+. ...-.||.+|.+.|.+..- +..-.
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~ 197 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYS 197 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4556777888776 6777899999999987743 4467889999977776221 22111
Q ss_pred eccceeEEeechHHHHHHHHh
Q psy15388 106 CTRPYAFVEFDSSIKKLRKSF 126 (217)
Q Consensus 106 ~~~~~~~~~F~~~l~~l~~~y 126 (217)
..-+-.-..|+.-++.+++.+
T Consensus 198 ~~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 198 MEMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp TTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHhc
Confidence 111111135777777776654
No 29
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=75.79 E-value=5.3 Score=35.38 Aligned_cols=91 Identities=11% Similarity=0.137 Sum_probs=58.1
Q ss_pred ChhhhhHHHhhcCceeee-eeccccccccchhhhhhHHHHHHHHhCCCC--CCceeeeccceeeeeeeecceEEEEeecc
Q psy15388 1 MFLLTMIARVRDGLILSA-SMQDDEYSERSTLEYQNQAKQLFRKLNLNS--PAKLSIETGNYFFHYLIDRGVCFLALCEK 77 (217)
Q Consensus 1 mI~~~~IaR~~D~l~L~~-~~~~~~~~~~~~~~f~~~a~~il~~i~~~~--~~k~s~~~~~~~~h~l~~~~i~~~~it~~ 77 (217)
||.+.+|.= ..|-++.+ +... ... +..++.+.+.+.... ..--.++.+++.|.|...+++.|+|+++.
T Consensus 1 MI~~i~I~~-~~Gk~~l~k~y~~--~~~------~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~ 71 (435)
T 2vgl_M 1 MIGGLFIYN-HKGEVLISRVYRD--DIG------RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQ 71 (435)
T ss_dssp CCCEEEEEC-TTCCEEEEEECSS--SCC------HHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESS
T ss_pred CeEEEEEEC-CCCCEEEEEecCC--CCC------hhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecC
Confidence 676666653 34544444 4321 111 223334444444211 12234567888888888899999999999
Q ss_pred ccchhHHHHHHHHHHHHHhhhcc
Q psy15388 78 TFSTKVAYSYLESLSLEFHGQYG 100 (217)
Q Consensus 78 ~~p~~~af~fL~ei~~~F~~~~~ 100 (217)
+...-..+.||..+.+-+..-++
T Consensus 72 ~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 72 NVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988877766554
No 30
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=54.70 E-value=6 Score=21.21 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=16.6
Q ss_pred cchhhhhHHHHHHhhchhhHHHhhhHhh
Q psy15388 137 TLNTELQDVQRIMVQNIDDINATMNLVL 164 (217)
Q Consensus 137 ~i~~~l~evk~iM~~NIdkiL~RgekLd 164 (217)
.++.++.+++ +|||.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 4556665554 57899998877765
No 31
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=34.89 E-value=1.2e+02 Score=21.74 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=37.6
Q ss_pred hcCceeeeeeccccccccch----hhhhhHHHHHHHHhCCCCCCceeeecc-ceeeeeeeecceEEEEeeccccchhHHH
Q psy15388 11 RDGLILSASMQDDEYSERST----LEYQNQAKQLFRKLNLNSPAKLSIETG-NYFFHYLIDRGVCFLALCEKTFSTKVAY 85 (217)
Q Consensus 11 ~D~l~L~~~~~~~~~~~~~~----~~f~~~a~~il~~i~~~~~~k~s~~~~-~~~~h~l~~~~i~~~~it~~~~p~~~af 85 (217)
.||++++++...+...-... ..+...++.+...+..+.-....++.+ +|.|-+-..++.+.+++++++..--...
T Consensus 27 ~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~vla~~~a~lG~v~ 106 (126)
T 3leq_A 27 EDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMGKGYLILTAAGPGAHLVVLTRQGADVGVVA 106 (126)
T ss_dssp TTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECSSCEEEEEESSTTEEEEEEECTTCCHHHHH
T ss_pred CCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCEEEEEEeCCCcEEEEEeCCCCCHHHHH
Confidence 48999988652111000001 112222233333443333345566665 6676677677888888888888765544
Q ss_pred HHHHH
Q psy15388 86 SYLES 90 (217)
Q Consensus 86 ~fL~e 90 (217)
.-+..
T Consensus 107 ~em~~ 111 (126)
T 3leq_A 107 YQMNM 111 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 32
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=31.21 E-value=1.7e+02 Score=22.04 Aligned_cols=86 Identities=8% Similarity=-0.035 Sum_probs=49.2
Q ss_pred hcCceeee-----eecccccccc---chhhhhhHHHHHHHHhCCCCCCceeeecc-ceeeeeeeecceEEEEeeccccch
Q psy15388 11 RDGLILSA-----SMQDDEYSER---STLEYQNQAKQLFRKLNLNSPAKLSIETG-NYFFHYLIDRGVCFLALCEKTFST 81 (217)
Q Consensus 11 ~D~l~L~~-----~~~~~~~~~~---~~~~f~~~a~~il~~i~~~~~~k~s~~~~-~~~~h~l~~~~i~~~~it~~~~p~ 81 (217)
.||+++++ +...+ ..+. -....-..++.+.+.+..+.-....++.+ +|.|-....++.+.+++++++.+-
T Consensus 37 ~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~Vla~~~a~l 115 (163)
T 1j3w_A 37 RKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPL 115 (163)
T ss_dssp TTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEEEEECTTSCH
T ss_pred CCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEEEEeCCCCCh
Confidence 48999988 44221 1000 01112344455556666544445566665 556656667888889999999877
Q ss_pred hHHHHHHHHHHHHHhh
Q psy15388 82 KVAYSYLESLSLEFHG 97 (217)
Q Consensus 82 ~~af~fL~ei~~~F~~ 97 (217)
-...-.+.....+..+
T Consensus 116 G~v~~~m~~~v~~l~~ 131 (163)
T 1j3w_A 116 GKVKLHGKRASEALAR 131 (163)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655555544444433
No 33
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=21.34 E-value=60 Score=21.29 Aligned_cols=23 Identities=9% Similarity=0.355 Sum_probs=19.9
Q ss_pred chhhhhHHHHHHhhchhhHHHhh
Q psy15388 138 LNTELQDVQRIMVQNIDDINATM 160 (217)
Q Consensus 138 i~~~l~evk~iM~~NIdkiL~Rg 160 (217)
..++++++++|+..|+.++=+|.
T Consensus 5 s~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 5 SKDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999998775
No 34
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=20.12 E-value=1.6e+02 Score=20.60 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=39.0
Q ss_pred hcCceeeeeeccccccc---cchhhhhhHHHHHHHHhCCCCCC--ceeeeccceeeeeeeecceEEEEeecc
Q psy15388 11 RDGLILSASMQDDEYSE---RSTLEYQNQAKQLFRKLNLNSPA--KLSIETGNYFFHYLIDRGVCFLALCEK 77 (217)
Q Consensus 11 ~D~l~L~~~~~~~~~~~---~~~~~f~~~a~~il~~i~~~~~~--k~s~~~~~~~~h~l~~~~i~~~~it~~ 77 (217)
.||.|+-+..+. ..+. .-..++...|+.++..+.|. ++ .+.+....+-+....++++++++|-++
T Consensus 35 ~~G~pIrSt~d~-~~~~~yA~li~~L~~~A~~~vr~lDp~-deL~fLRiRTkkhEimIapd~~~~LiVvQ~~ 104 (106)
T 2hz5_A 35 TEGIPIKSTMDN-PTTTQYASLMHSFILKARSTVRDIDPQ-NDLTFLRIRSKKNEIMVAPDKDYFLIVIQNP 104 (106)
T ss_dssp TTCCEEEESSCH-HHHHHHHHHHHHHHHHHHHHHHHHCTT-CCEEEEEEEESSCEEEEEC---CEEEEEECC
T ss_pred CCCCeEEEecCc-hHHHHHHHHHHHHHHHHHHHHHccCCC-CCeEEEEEEeCCcEEEEEecCCEEEEEEecC
Confidence 478888776542 1111 11345667778888888873 33 234446677777777888998888765
Done!