RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15388
(217 letters)
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens} PDB:
2nup_C 3egd_C 3egx_C 1ifq_A
Length = 196
Score = 128 bits (323), Expect = 1e-37
Identities = 89/156 (57%), Positives = 118/156 (75%)
Query: 1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
M LLTMIARV DGL L+ASMQ+DE S R +YQ+QAKQLFRKLN SP + ++E G
Sbjct: 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 61
Query: 61 FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
FHY+I++GVC+L LCE F K+A++YLE L EF Q+G + +RPY+F+EFD+ I+
Sbjct: 62 FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 121
Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct: 122 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 157
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding,
cytoplasmic vesicle, ER-GOLG transport, golgi apparatus,
lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Length = 199
Score = 82.2 bits (202), Expect = 1e-19
Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 11/164 (6%)
Query: 1 MFLLTMIARVRDGL----ILSASMQDDEYS--ERSTL-EYQNQAKQLFRKLNLNSPAKLS 53
+ L ++ G +L A+ +S +RS++ E+ QL + + + S
Sbjct: 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGS-RAS 59
Query: 54 IETGNYFFHY-LIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAF 112
++ Y H + + + + + + ++VA++ LE + EF Q P
Sbjct: 60 VKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPAT- 118
Query: 113 VEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
+++ + + R ++ + EL + + I+ ++ +
Sbjct: 119 -IHYTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESL 161
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein
7; endocytosis,exocytosis, endocytosis, exocytosis,
acetylation, coiled coil; 2.2A {Homo sapiens} PDB:
2dmw_A
Length = 169
Score = 80.3 bits (197), Expect = 3e-19
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 2 FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFF 61
L ++AR L A + + +Q+ K+ + KL+ GNY F
Sbjct: 46 ILFAVVARGTTILAKHAWCGGN---------FLEVTEQILAKIP-SENNKLTYSHGNYLF 95
Query: 62 HYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFV-EFDSSIK 120
HY+ + +L + + F A+S+L + F YG + + PYA EF S +
Sbjct: 96 HYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTA-LPYAMNSEFSSVLA 154
Query: 121 KLRKSFTDTR 130
K ++
Sbjct: 155 AQLKHHSENH 164
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7;
endocytosis, exocytosis, clathrin adaptor, chimera,
fusion P; 2.80A {Homo sapiens}
Length = 173
Score = 77.9 bits (191), Expect = 3e-18
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 10 VRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGV 69
R IL+ +++ + +Q+ K+ + KL+ GNY FHY+ +
Sbjct: 62 ARGTTILA------KHAWCGG-NFLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDRI 113
Query: 70 CFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFV-EFDSSIKKLRKSFTD 128
+L + + F A+S+L + F YG + + PYA EF S + K ++
Sbjct: 114 VYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTA-LPYAMNSEFSSVLAAQLKHHSE 172
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion,
snare, coiled coil, lipoprotein, membrane,
phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB:
1h8m_A 1iou_A
Length = 144
Score = 50.0 bits (119), Expect = 3e-08
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 37 AKQLFRKLNLNSPAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEF 95
A+ + + + SIE GNY H Y G+C + + +K + + AY+ L + E+
Sbjct: 48 AETVASRTGAGQ--RQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEY 105
Query: 96 HGQYGGQ----FEQCTRPYAFVEFDSSIKK 121
+ + + + D+ I K
Sbjct: 106 LVAHPKEEWADVTETNDALKMKQLDTYISK 135
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 8e-07
Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 40/158 (25%)
Query: 71 FLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDS------------S 118
F K A + L + + + Y + P + +E DS S
Sbjct: 292 FFVSVRK------AITVLFFIGVRCYEAYP----NTSLPPSILE-DSLENNEGVPSPMLS 340
Query: 119 IKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQ 178
I L + V + N+ L +++ I +N NLV+ G L G+
Sbjct: 341 ISNLTQEQVQDYVNK----TNSHLPAGKQV---EISLVNGAKNLVVS-GPPQSLYGLNLT 392
Query: 179 VRLLGLPDKHTLSGIPDQVR--------LFIGLPDEHT 208
+R P S IP R L + P H+
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-FHS 429
Score = 29.2 bits (65), Expect = 1.3
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 17/124 (13%)
Query: 42 RKLNLNSPAKLSIETG-----NYFFHY--LIDRGVCFLA-LCEKTFSTKVAYSYLESLSL 93
R L L+ S+E FF L ++ F L E T A +
Sbjct: 7 RPLTLSHG---SLEHVLLVPTASFFIASQLQEQ---FNKILPEPT--EGFAADDEPTTPA 58
Query: 94 EFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRN-LNTLNTELQDVQRIMVQN 152
E G++ G P +FD + F + + N ++ L +L +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 153 IDDI 156
++
Sbjct: 119 TKEL 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 3e-04
Identities = 21/183 (11%), Positives = 62/183 (33%), Gaps = 43/183 (23%)
Query: 13 GLILSASMQDDEYSE--RSTLE-YQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGV 69
+ L ++ + RS ++ Y + + + + ++ YF+ ++
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYN-----IPKTFDSDDLIPPYLD--QYFYSHI----- 477
Query: 70 CFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDT 129
+ +L+++ H + F + F+E +K+R T
Sbjct: 478 --------------GH-HLKNIE---HPERMTLFRMVFLDFRFLE-----QKIRHDSTAW 514
Query: 130 RVRRNLNTLNTELQDVQRIMVQNIDD----INATMNLVLGLGNQIDLTGIPDQVRLLGLP 185
++ +L+ + + N +NA ++ + + + + D +R + L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALM 573
Query: 186 DKH 188
+
Sbjct: 574 AED 576
Score = 34.1 bits (77), Expect = 0.031
Identities = 48/276 (17%), Positives = 88/276 (31%), Gaps = 82/276 (29%)
Query: 2 FLLTMIA-RVRDGLILSASMQDDEY-SERSTLEYQNQAKQLFRKLNLNSPAK-------- 51
FL++ I R SM Y +R L NQ +F K N++
Sbjct: 93 FLMSPIKTEQRQ-----PSMMTRMYIEQRDRLYNDNQ---VFAKYNVSRLQPYLKLRQAL 144
Query: 52 LSIETGNY-FFHYLIDRGVCFLAL--C-----EKTFSTKVAY-------------SYLES 90
L + ++ G ++AL C + K+ + L+
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 91 LSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQ---- 146
L + + + + + + S +LR+ L L +VQ
Sbjct: 205 LLYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRLLKSKPYENCLLVLL----NVQNAKA 258
Query: 147 --------RIMV-----QNIDDINATMNLVLGLGNQID-LTGIPDQVR-LLG-------- 183
+I++ Q D ++A + L + LT PD+V+ LL
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQ 316
Query: 184 -LPDKHTLSGIPDQVRLFIG--LPDEHTLSGRPDRY 216
LP + L+ P ++ + I + D D +
Sbjct: 317 DLP-REVLTTNPRRLSI-IAESIRDGLA---TWDNW 347
Score = 33.7 bits (76), Expect = 0.050
Identities = 41/245 (16%), Positives = 74/245 (30%), Gaps = 69/245 (28%)
Query: 1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRK-LNLN-----------S 48
+ L T +V D L + + TL ++ K L K L+ +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 49 PAKLSI---------ETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQY 99
P +LSI T + + H D+ +T + S L L + +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDK-----------LTTIIESS-LNVLEPAEYRKM 374
Query: 100 GGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTL--NTELQDVQRIMVQNIDDIN 157
F++ + F + I T + L+ + + DV ++ N
Sbjct: 375 ---FDRLS---VFPP-SAHIP--------TIL---LSLIWFDVIKSDVMVVV-------N 409
Query: 158 ATMNLVLGLGNQIDLT-GIPD-----QVRLLGLPDKHTLSGIPDQVRLFIGLPDEHTLSG 211
L + T IP +V+L H I D + + +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS--IVDHYNIPKTFDSDDLIPP 467
Query: 212 RPDRY 216
D+Y
Sbjct: 468 YLDQY 472
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC
micelle, snare, coiled coil, membrane fusion,
transmembrane; NMR {Rattus norvegicus}
Length = 119
Score = 33.2 bits (75), Expect = 0.021
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 128 DTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQID 171
+ R L ++ +V IM N+D + + L ++ D
Sbjct: 28 NLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRAD 71
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion,
neurotransmission, endocytosis/exocytosis complex; 2.95A
{Loligo pealei} SCOP: h.1.15.1
Length = 80
Score = 31.8 bits (72), Expect = 0.027
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 128 DTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
+ + L ++++V IM N+D +
Sbjct: 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKV 38
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex,
transport protein; 2.40A {Rattus norvegicus} SCOP:
h.1.15.1
Length = 96
Score = 32.0 bits (72), Expect = 0.033
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 128 DTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
+ R L ++ +V IM N+D +
Sbjct: 25 NLTSNRRLQQTQAQVDEVVDIMRVNVDKV 53
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex,
coiled coil, transmembrane; 1.9A {Rattus norvegicus}
SCOP: h.1.15.1
Length = 65
Score = 30.9 bits (70), Expect = 0.042
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 133 RNLNTLNTELQDVQRIMVQNIDDI 156
+ L +E++ V+ IM QN++ I
Sbjct: 9 DRVRNLQSEVEGVKNIMTQNVERI 32
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein
complex, four helix bundle, transport protein; 1.45A
{Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A
3rk3_A 3rl0_A 3fii_B 3g94_B
Length = 63
Score = 30.5 bits (69), Expect = 0.063
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 133 RNLNTLNTELQDVQRIMVQNIDDI 156
R L ++ +V IM N+D +
Sbjct: 4 RRLQQTQAQVDEVVDIMRVNVDKV 27
>3hd7_A Vesicle-associated membrane protein 2; membrane protein,
coiled-coil, 4-helical bundle, cell juncti cytoplasmic
vesicle, membrane, phosphoprotein; HET: GGG; 3.40A
{Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Length = 91
Score = 31.0 bits (70), Expect = 0.065
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 133 RNLNTLNTELQDVQRIMVQNIDDI 156
R L ++ +V IM N+D +
Sbjct: 5 RRLQQTQAQVDEVVDIMRVNVDKV 28
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin,
SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil;
1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Length = 61
Score = 30.1 bits (68), Expect = 0.087
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 134 NLNTLNTELQDVQRIMVQNIDDI 156
L E+ D IM NI+ +
Sbjct: 3 RTAELQAEIDDTVGIMRDNINKV 25
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion,
snare complex, early endosomal snare complex, VTI1A,
VAMP4, transport protein; 2.50A {Mus musculus}
Length = 74
Score = 30.2 bits (68), Expect = 0.093
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 133 RNLNTLNTELQDVQRIMVQNIDDI 156
+ + ++ +V +M +NI +
Sbjct: 8 DKIKHVQNQVDEVIDVMQENITKV 31
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.099
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 32 EYQNQAKQLFRKLNL----NSPA---KLSIE 55
E Q K+L L L ++PA K ++E
Sbjct: 18 EKQ-ALKKLQASLKLYADDSAPALAIKATME 47
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A
{Streptococcus mutans}
Length = 255
Score = 31.4 bits (71), Expect = 0.20
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 19/86 (22%)
Query: 85 YSYLESLSLEFHGQYGGQFEQCTRPYAFVE-----FDSSIKKLRKSFTDTRVRRNLNTLN 139
+ +F Q P FV +S +K+ L
Sbjct: 52 KIKFRGIRKQFRKQKRHS------PIEFVTGRVKPIESIKEKMV------LRGIKKENLT 99
Query: 140 TELQDVQ--RIMVQNIDDINATMNLV 163
++QD+ RIMVQ +DD+N + L+
Sbjct: 100 QDMQDIAGLRIMVQFVDDVNDVLELL 125
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure
initiative, midwest center structural genomics, MCSG,
transferase; HET: PG4; 2.40A {Streptococcus pneumoniae}
SCOP: d.218.1.8
Length = 226
Score = 30.9 bits (70), Expect = 0.21
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 23/86 (26%)
Query: 87 YLESLSLEFHGQYGGQFEQCTRPYAFVE-----FDSSIKKLRKSFTDTRVRRNL--NTLN 139
L + ++ Q P FV +S +K+ RR + TL
Sbjct: 25 KLRGIRKQYRKQNKHS------PIEFVTGRVKPIESIKEKMA--------RRGITYATLE 70
Query: 140 TELQDVQ--RIMVQNIDDINATMNLV 163
+LQD+ R+MVQ +DD+ ++++
Sbjct: 71 HDLQDIAGLRVMVQFVDDVKEVVDIL 96
>3cdd_A Prophage MUSO2, 43 kDa tail protein; shewanella oneidensis MR-1,
structural genomics, PSI- protein structure initiative;
HET: MSE; 2.10A {Shewanella oneidensis} SCOP: b.106.1.1
b.106.1.1
Length = 361
Score = 29.4 bits (65), Expect = 0.90
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 8/75 (10%)
Query: 125 SFTDTRVRRNLN--------TLNTELQDVQRIMVQNIDDINATMNLVLGLGNQIDLTGIP 176
+T + R+L + + I+ I + +G + +TG
Sbjct: 18 GWTKIGITRSLEAMSGAFDLEMTYKFLGNDAQYKAFIEPIKQGQACTVDIGGERVITGYV 77
Query: 177 DQVRLLGLPDKHTLS 191
D T+S
Sbjct: 78 DDWVPSYDESTITIS 92
>1wru_A 43 kDa tail protein; bacteriophage MU, baseplate, gene product 44,
structural Pro; 2.10A {Enterobacteria phage MU} SCOP:
b.106.1.1 b.106.1.1
Length = 379
Score = 29.5 bits (65), Expect = 0.98
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 121 KLRKSFTDTRVRRNLNTLNTELQ-DVQRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQV 179
+L +T V R++ ++ + V ++ + L +G QI TG D
Sbjct: 12 RLFTGWTSVSVTRSIESVAGYFELGVNVPPGTDLSGLAPGKKFTLEIGGQIVCTGYIDSR 71
Query: 180 RLLGLPDKHTLS 191
R D ++
Sbjct: 72 RRQMTADSMKIT 83
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase,
glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A
{Carica papaya} PDB: 2faw_A*
Length = 266
Score = 28.7 bits (63), Expect = 1.4
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 148 IMVQNIDDINATMNLVLGLGNQIDLTGIPDQVRLLGLPDKHTLSGI---PDQVRLFI 201
I I+A +LG I L + ++ G D L+GI + R+F+
Sbjct: 169 WQTDCIARISAKDGTLLG---WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV 222
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex,
Y-family DNA polym translesion synthesis, nucleoside
triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens}
PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A*
2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A*
3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A*
...
Length = 420
Score = 27.7 bits (62), Expect = 2.7
Identities = 9/64 (14%), Positives = 26/64 (40%)
Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQVR 180
+R+ ++ R +Q++ N D + +++++ L + +P +
Sbjct: 345 IIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLT 404
Query: 181 LLGL 184
LL +
Sbjct: 405 LLSV 408
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain,
RNA polymerase II binding protein, phosphoprotein; NMR
{Saccharomyces cerevisiae} PDB: 2l0i_A*
Length = 142
Score = 26.1 bits (57), Expect = 6.4
Identities = 9/60 (15%), Positives = 20/60 (33%)
Query: 125 SFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQVRLLGL 184
+F+ + LNTL + + + + + + + +LLGL
Sbjct: 2 AFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGL 61
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 26.8 bits (60), Expect = 6.7
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 18 ASMQDDEYSERSTLEYQNQAKQL---FRKLNLNSP--------AKLSIETGNYFFHYLID 66
A+M DDE++E++ +Q + +K N+ + L+
Sbjct: 268 AAMDDDEFTEKTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLK 327
Query: 67 RGV 69
+G+
Sbjct: 328 KGI 330
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.398
Gapped
Lambda K H
0.267 0.0570 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,187,646
Number of extensions: 181209
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 36
Length of query: 217
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,188,903
Effective search space: 531990681
Effective search space used: 531990681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)